F378107

General Info

Members Datasets Scaffolds Average Seq Length
272 160 253 311

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10009036|Ga0070658_100090366
Length 309
Sequence MRKKVTIVGSGNVGATTAHWIAAKELADVVLLDVVEGVPQGKGLDLLEAMPIEKRDVSILGTNDYADTKDSDVVVITAGIARKPGMSRDDLLNTNFKIMSDVVSKVVAASPNTILIIVSNPLDAMAQTAFKQAGLPRERVIGMAGVLDSARFRTFIAQELKVSVENVTAFVLGGHGDTMVPLSRYSTVAGIPITELIAPERLAELVQRTRDGGAEIVKYLKTGSAFYAPSAAATEMVEAILKDKKKILPCAAYLQGEYGISGLYIGVPCKLGAKGLEEIIQIKLTAEEQAGLQKSADSVKELCSVIGMA

Samples

Sample ID Description Type Environment
1 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
6 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
7 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
8 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
9 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
10 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
11 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
12 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
13 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
14 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
15 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
16 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
17 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
18 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
19 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
20 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
21 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
22 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
23 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
24 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
25 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
26 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
27 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
28 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
29 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
30 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
31 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
32 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
35 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
36 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
37 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
38 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
39 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
40 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
41 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
42 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
43 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
44 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
45 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
46 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
59 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
60 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
62 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
63 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
69 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
71 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
81 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
84 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
85 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
86 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
87 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
88 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
89 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
90 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
91 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
92 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
93 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
94 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
95 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
96 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
97 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
98 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
101 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
102 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
103 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
104 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
105 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
106 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
107 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
108 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
109 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
110 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
111 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
112 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
113 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
114 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
115 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
116 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
117 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
118 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
119 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
120 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
121 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
122 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
123 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
134 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
135 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
136 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
137 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
138 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
139 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
140 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
141 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049850 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control Metagenome Rhizosphere
145 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
146 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
147 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
148 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
149 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
150 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
151 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
152 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
153 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
154 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
155 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
156 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
157 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
158 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
159 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
160 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.28
Metatranscriptomes 0.37
Isolates 7.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.75
Nodule 0
Rhizoplane 0.37
Rhizosphere 65.81
Stem 0
Stem Tuber 0
Unclassified 15.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10004628 3300001979 Bacteria 5902
2 JGI24739J22299_10000434 3300001989 Bacteria 14521
3 JGI25154J39366_1000001 3300002738 Bacteria 483450
4 JGI25158J39367_1003260 3300002739 Bacteria 2526
5 JGI25159J45721_1023577 3300002987 Bacteria 1112
6 JGI25153J46596_10000424 3300003215 Bacteria 27513
7 JGI25153J46596_10017571 3300003215 Bacteria 2812
8 rootH1_10077808 3300003316 Bacteria 6347
9 rootH1_10100871 3300003316 Bacteria 1429
10 rootH2_10018303 3300003320 Bacteria 45831
11 rootH2_10139880 3300003320 Bacteria 9868
12 rootH2_10157825 3300003320 Bacteria 3344
13 rootL2_10001691 3300003322 Bacteria 13417
14 rootL2_10021871 3300003322 Bacteria 6153
15 rootL2_10026937 3300003322 Bacteria 6453
16 rootL2_10062795 3300003322 Bacteria 6617
17 rootL2_10096362 3300003322 Bacteria 2984
18 rootH1_10012383 3300003323 Bacteria 70816
19 rootH1_10021036 3300003323 Bacteria 13777
20 rootH1_10028871 3300003323 Bacteria 24607
21 rootH1_10054898 3300003323 Bacteria 9717
22 rootH1_10054899 3300003316 Bacteria 4989
23 rootH1_10054899 3300003323 Bacteria 12941
24 rootH1_10157183 3300003323 Bacteria 1339
25 rootH1_10220983 3300003323 Bacteria 1826
26 JGI25160J50197_1006162 3300003354 Bacteria 4884
27 JGI25160J50197_1021878 3300003354 Bacteria 1887
28 JGI25160J50197_1034923 3300003354 Bacteria 1242
29 Ga0055535_1004219 3300003761 Bacteria 3604
30 Ga0055530_10000331 3300003791 Bacteria 42800
31 Ga0055531_10000133 3300003794 Bacteria 84995
32 Ga0055531_10000143 3300003794 Bacteria 82284
33 Ga0055531_10000166 3300003794 Bacteria 74728
34 Ga0055531_10047984 3300003794 Bacteria 1156
35 Ga0065165_1000105 3300005262 Bacteria 140409
36 Ga0065165_1003630 3300005262 Bacteria 10568
37 Ga0065165_1028560 3300005262 Bacteria 1799
38 Ga0065704_10075115 3300005289 Bacteria 5781
39 Ga0065715_10001291 3300005293 Bacteria 8619
40 Ga0070658_10009036 3300005327 Bacteria 8015
41 Ga0070670_100404147 3300005331 Bacteria 1206
42 Ga0070670_100445321 3300005331 Unclassified 1147
43 Ga0068868_100190507 3300005338 Bacteria 1705
44 Ga0070669_100116996 3300005353 Bacteria 2029
45 Ga0070659_100053245 3300005366 Bacteria 3185
46 Ga0070678_100218138 3300005456 Bacteria 1584
47 Ga0070693_100299512 3300005547 Bacteria 1083
48 Ga0068855_100023567 3300005563 Bacteria 7370
49 Ga0068855_100070860 3300005563 Bacteria 4055
50 Ga0068856_100036568 3300005614 Bacteria 4814
51 Ga0068856_100078685 3300005614 Bacteria 3269
52 Ga0068851_10000645 3300005834 Bacteria 14843
53 Ga0068860_100290641 3300005843 Bacteria 1599
54 Ga0075428_100005184 3300006844 Bacteria 14473
55 Ga0075428_100276907 3300006844 Bacteria 1805
56 Ga0105240_10133839 3300009093 Bacteria 2970
57 Ga0111539_10007466 3300009094 Bacteria 14002
58 Ga0111539_10071846 3300009094 Bacteria 4082
59 Ga0105245_10021405 3300009098 Bacteria 5672
60 Ga0157371_10107794 3300013102 Bacteria 1977
61 Ga0157372_10088464 3300013307 Bacteria 3517
62 Ga0157375_10110323 3300013308 Bacteria 2848
63 Ga0163163_10344897 3300014325 Bacteria 1545
64 Ga0157380_10024406 3300014326 Bacteria 4577
65 Ga0157380_10035119 3300014326 Bacteria 3871
66 Ga0157379_10158756 3300014968 Unclassified 2041
67 Ga0182005_1000076 3300015265 Bacteria 79167
68 Ga0209436_103188 3300025208 Bacteria 4477
69 Ga0209258_100041 3300025242 Bacteria 381381
70 Ga0209646_1000002 3300025246 Bacteria 1425781
71 Ga0209646_1009055 3300025246 Bacteria 1586
72 Ga0209026_1000299 3300025250 Bacteria 54147
73 Ga0209148_1000090 3300025254 Bacteria 250982
74 Ga0209455_1004635 3300025272 Bacteria 4437
75 Ga0209673_1000096 3300025273 Bacteria 194819
76 Ga0209130_1002410 3300025284 Bacteria 9434
77 Ga0209564_1007195 3300025295 Bacteria 5797
78 Ga0209564_1025065 3300025295 Bacteria 2019
79 Ga0209758_1001095 3300025297 Bacteria 35071
80 Ga0209050_1000207 3300025298 Bacteria 131328
81 Ga0209050_1001899 3300025298 Bacteria 20012
82 Ga0207426_1001233 3300025302 Bacteria 22503
83 Ga0207426_1002349 3300025302 Bacteria 12343
84 Ga0207426_1005766 3300025302 Bacteria 5565
85 Ga0209257_1000001 3300025304 Bacteria 2274655
86 Ga0209257_1000005 3300025304 Bacteria 1592528
87 Ga0209257_1008122 3300025304 Bacteria 6094
88 Ga0207656_10000386 3300025321 Bacteria 14844
89 Ga0207687_10471037 3300025927 Bacteria 1044
90 Ga0207690_10035798 3300025932 Bacteria 3210
91 Ga0207677_10179270 3300026023 Bacteria 1665
92 Ga0207702_10081784 3300026078 Bacteria 2806
93 Ga0207702_10156468 3300026078 Bacteria 2078
94 Ga0207683_10243013 3300026121 Bacteria 1642
95 Ga0207428_10022300 3300027907 Bacteria 5347
96 Ga0207428_10244056 3300027907 Bacteria 1341
97 Ga0268264_10257514 3300028381 Bacteria 1624
98 Ga0265334_10022224 3300028573 Bacteria 2587
99 Ga0265318_10011421 3300028577 Bacteria 3822
100 Ga0265318_10041007 3300028577 Bacteria 1761
101 Ga0307515_10000007 3300028794 Bacteria 719669
102 Ga0307515_10193736 3300028794 Bacteria 1933
103 Ga0265332_10008456 3300031238 Bacteria 4625
104 Ga0265329_10022719 3300031242 Bacteria 2096
105 Ga0265339_10036992 3300031249 Bacteria 2729
106 Ga0265331_10011427 3300031250 Bacteria 4862
107 Ga0265327_10057369 3300031251 Bacteria 2003
108 Ga0265316_10041012 3300031344 Bacteria 3708
109 Ga0307408_100036185 3300031548 Unclassified 3469
110 Ga0307514_10129045 3300031649 Bacteria 1745
111 Ga0316579_10005409 3300031691 Bacteria 5153
112 Ga0265314_10028406 3300031711 Unclassified 4171
113 Ga0265342_10004396 3300031712 Bacteria 11124
114 Ga0316576_10008539 3300031727 Bacteria 6545
115 Ga0316576_10020796 3300031727 Unclassified 4527
116 Ga0316576_10022084 3300031727 Bacteria 4415
117 Ga0316576_10078328 3300031727 Bacteria 2449
118 Ga0316578_10003689 3300031728 Bacteria 7066
119 Ga0316578_10016438 3300031728 Bacteria 4005
120 Ga0316578_10034220 3300031728 Bacteria 2917
121 Ga0307413_10024782 3300031824 Bacteria 3277
122 Ga0307416_100000457 3300032002 Bacteria 20948
123 Ga0307414_10000118 3300032004 Bacteria 56182
124 Ga0307414_10094205 3300032004 Bacteria 2234
125 Ga0307411_10002227 3300032005 Bacteria 8449
126 Ga0307415_100012448 3300032126 Bacteria 4920
127 Ga0307415_100338488 3300032126 Bacteria 1262
128 Ga0316585_10002926 3300032137 Bacteria 4666
129 Ga0316580_10005923 3300032139 Bacteria 3587
130 Ga0316574_0037973 3300035398 Bacteria 2956
131 Ga0316582_0027612 3300036647 Unclassified 3430
132 Ga0316582_0047744 3300036647 Unclassified 2704
133 Ga0316584_0115221 3300036712 Unclassified 2010
134 Ga0316584_0246373 3300036712 Bacteria 1306
135 Ga0395901_0081791 3300038443 Bacteria 3374
136 Ga0400489_02144 3300039093 Unclassified 1191
137 Ga0400489_44297 3300039093 Bacteria 12101
138 Ga0451793_1690276 3300041452 Bacteria 1804
139 Ga0439431_0002249 3300041997 Bacteria 4260
140 Ga0439431_0006917 3300041997 Bacteria 2522
141 Ga0439449_0026408 3300042007 Bacteria 2168
142 Ga0439449_0064049 3300042007 Bacteria 1356
143 Ga0451577_0000156 3300042876 Bacteria 151954
144 Ga0451577_0000393 3300042876 Bacteria 80362
145 Ga0451577_0000703 3300042876 Bacteria 52315
146 Ga0451577_0002268 3300042876 Bacteria 23273
147 Ga0451577_0002271 3300042876 Bacteria 23248
148 Ga0451577_0006063 3300042876 Bacteria 12160
149 Ga0451577_0011014 3300042876 Bacteria 8589
150 Ga0451577_0051718 3300042876 Bacteria 3668
151 Ga0451577_0058315 3300042876 Bacteria 3442
152 Ga0451577_0115693 3300042876 Bacteria 2401
153 Ga0451577_0165410 3300042876 Bacteria 1992
154 Ga0451577_0249843 3300042876 Bacteria 1605
155 Ga0451577_0351608 3300042876 Bacteria 1337
156 Ga0466982_0063155 3300044672 Bacteria 2281
157 Ga0453683_0000045 3300044673 Bacteria 211088
158 Ga0453683_0000759 3300044673 Bacteria 32471
159 Ga0453683_0001172 3300044673 Bacteria 23669
160 Ga0453683_0035982 3300044673 Bacteria 3117
161 Ga0453683_0066421 3300044673 Bacteria 2254
162 Ga0453683_0165636 3300044673 Unclassified 1399
163 Ga0453683_0176149 3300044673 Bacteria 1355
164 Ga0453683_0243718 3300044673 Bacteria 1145
165 Ga0453684_0000051 3300044712 Bacteria 551033
166 Ga0453684_0000226 3300044712 Bacteria 244912
167 Ga0453684_0000626 3300044712 Bacteria 128697
168 Ga0453684_0000771 3300044712 Bacteria 110664
169 Ga0453684_0000846 3300044712 Bacteria 103225
170 Ga0453684_0001191 3300044712 Bacteria 80362
171 Ga0453684_0001542 3300044712 Bacteria 64357
172 Ga0453684_0001990 3300044712 Bacteria 52425
173 Ga0453684_0003727 3300044712 Bacteria 33740
174 Ga0453684_0004833 3300044712 Bacteria 27664
175 Ga0453684_0005166 3300044712 Bacteria 26255
176 Ga0453684_0013824 3300044712 Bacteria 13040
177 Ga0453684_0016572 3300044712 Bacteria 11504
178 Ga0453684_0030322 3300044712 Bacteria 7645
179 Ga0453684_0088214 3300044712 Bacteria 3841
180 Ga0453684_0218723 3300044712 Bacteria 2208
181 Ga0453684_0227605 3300044712 Bacteria 2155
182 Ga0453684_0227910 3300044712 Bacteria 2153
183 Ga0453684_0244410 3300044712 Bacteria 2064
184 Ga0453684_0489186 3300044712 Unclassified 1364
185 Ga0466959_0043773 3300045049 Bacteria 3299
186 Ga0451576_0000003 3300045051 Bacteria 1550573
187 Ga0451576_0000175 3300045051 Bacteria 161976
188 Ga0451576_0000352 3300045051 Bacteria 110468
189 Ga0451576_0000551 3300045051 Bacteria 80362
190 Ga0451576_0011699 3300045051 Bacteria 9942
191 Ga0451576_0012085 3300045051 Bacteria 9744
192 Ga0451576_0015051 3300045051 Bacteria 8591
193 Ga0451576_0021716 3300045051 Bacteria 6970
194 Ga0451576_0023212 3300045051 Bacteria 6720
195 Ga0451576_0024745 3300045051 Bacteria 6480
196 Ga0451576_0075997 3300045051 Bacteria 3495
197 Ga0451576_0088865 3300045051 Bacteria 3214
198 Ga0451576_0105549 3300045051 Bacteria 2931
199 Ga0451576_0697596 3300045051 Bacteria 1067
200 Ga0495627_001939 3300046453 Bacteria 10779
201 Ga0495638_0000025 3300046460 Bacteria 353356
202 Ga0495639_0148779 3300046475 Bacteria 1129
203 Ga0495633_0000049 3300046558 Bacteria 156684
204 Ga0495634_0020034 3300046642 Bacteria 4746
205 Ga0496121_0000030 3300048924 Bacteria 412079
206 Ga0501031_0004080 3300049568 Bacteria 9428
207 Ga0501032_0001458 3300049569 Bacteria 18797
208 Ga0501032_0002893 3300049569 Bacteria 13349
209 Ga0501033_0000065 3300049570 Bacteria 100338
210 Ga0501034_0000172 3300049571 Bacteria 120544
211 Ga0501034_0030311 3300049571 Bacteria 5498
212 Ga0501037_0200306 3300049573 Bacteria 1411
213 Ga0501038_0033788 3300049574 Bacteria 4501
214 Ga0501038_0036697 3300049574 Bacteria 4301
215 Ga0501039_0001413 3300049575 Bacteria 17674
216 Ga0501043_0003285 3300049579 Bacteria 13325
217 Ga0501047_0074255 3300049581 Bacteria 3274
218 Ga0501047_0448895 3300049581 Bacteria 1119
219 Ga0501048_0130927 3300049582 Bacteria 1773
220 Ga0501202_007423 3300049652 Bacteria 1982
221 Ga0501222_007537 3300049662 Bacteria 1453
222 Ga0501236_001041 3300049670 Bacteria 3153
223 Ga0501238_011118 3300049671 Bacteria 1207
224 Ga0501242_000691 3300049674 Bacteria 3106
225 Ga0501257_000687 3300049686 Bacteria 6736
226 Ga0501257_012655 3300049686 Bacteria 1931
227 Ga0501241_001472 3300049758 Bacteria 4777
228 Ga0501241_001619 3300049758 Bacteria 4515
229 Ga0501264_000167 3300049761 Bacteria 10626
230 Ga0501035_0019556 3300049822 Bacteria 6222
231 Ga0501044_0004255 3300049823 Bacteria 16061
232 Ga0501045_0000101 3300049824 Bacteria 42188
233 Ga0501204_002760 3300049850 Bacteria 1804
234 nmdc:mga0k408_43587_c1 3300050493 Bacteria 2586
235 nmdc:mga08y16_5956_c1 3300050511 Bacteria 12783
236 Ga0500644_0000693 3300053088 Bacteria 12093
237 Ga0500644_0064539 3300053088 Bacteria 1301
238 Ga0500583_0043476 3300053092 Bacteria 2053
239 Ga0500651_0044000 3300053093 Bacteria 2812
240 Ga0500562_006968 3300053108 Bacteria 2850
241 Ga0500618_014050 3300053125 Bacteria 2057
242 Ga0500652_019257 3300053131 Bacteria 2532
243 Ga0500559_0015743 3300053136 Bacteria 3194
244 Ga0500577_0016746 3300053142 Bacteria 2319
245 Ga0500616_0000024 3300053153 Bacteria 455811
246 Ga0500616_0013311 3300053153 Bacteria 4782
247 Ga0500622_0000012 3300053156 Bacteria 383183
248 Ga0500622_0000050 3300053156 Bacteria 145556
249 Ga0500622_0001608 3300053156 Bacteria 17744
250 Ga0500622_0002494 3300053156 Bacteria 13241
251 Ga0500627_0011372 3300053158 Bacteria 3285
252 Ga0500633_0042593 3300053160 Bacteria 1532
253 Ga0587070_021259 3300059491 Bacteria 1094

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0115693 Ga0451577_0115693_18_899 293
2 3300053125 Ga0500618_014050 Ga0500618_014050_808_1695 295
3 3300053153 Ga0500616_0013311 Ga0500616_0013311_23_910 295
4 3300044712 Ga0453684_0001542 Ga0453684_0001542_3278_4213 299
5 3300045051 Ga0451576_0015051 Ga0451576_0015051_6465_7370 299
6 3300044712 Ga0453684_0489186 Ga0453684_0489186_224_1165 303
7 3300045051 Ga0451576_0000003 Ga0451576_0000003_796832_797773 305
8 3300005327 Ga0070658_10009036 Ga0070658_100090366 306
9 3300005563 Ga0068855_100023567 Ga0068855_1000235675 306
10 3300009093 Ga0105240_10133839 Ga0105240_101338392 306
11 iso_pu_bacteria 2890804823 2890805496 306
12 iso_pu_bacteria 2884634485 2884637341 307
13 iso_pu_bacteria 2910245624 2910246487 307
14 iso_pu_bacteria 2919692658 2919694368 307
15 3300042876 Ga0451577_0058315 Ga0451577_0058315_208_1134 308
16 3300045051 Ga0451576_0024745 Ga0451576_0024745_1972_2898 308
17 iso_pu_bacteria 2739367866 2740033771 308
18 iso_pu_bacteria 2818991442 2819573370 308
19 iso_pu_bacteria 2818991460 2819681030 308
20 iso_pu_bacteria 2821136567 2821136783 308
21 iso_pu_bacteria 2839989709 2839991882 308
22 iso_pu_bacteria 2883068021 2883072487 308
23 iso_pu_bacteria 2884791551 2884795806 308
24 iso_pu_bacteria 2896085136 2896087619 308
25 iso_pu_bacteria 2896109856 2896112658 308
26 iso_pu_bacteria 2904467357 2904468472 308
27 iso_pu_bacteria 2929177148 2929178629 308
28 iso_pu_bacteria 2929239360 2929241005 308
29 iso_pu_bacteria 2929921140 2929923030 308
30 iso_pu_bacteria 2945977869 2945981038 308
31 iso_pu_bacteria 2946013367 2946019560 308
32 iso_pu_bacteria 8003151029 8003152367 308
33 3300003320 rootH2_10018303 rootH2_1001830310 309
34 3300003320 rootH2_10139880 rootH2_1013988011 309
35 3300003322 rootL2_10001691 rootL2_1000169113 309
36 3300003322 rootL2_10026937 rootL2_100269373 309
37 3300003322 rootL2_10062795 rootL2_100627954 309
38 3300003322 rootL2_10096362 rootL2_100963621 309
39 3300003323 rootH1_10012383 rootH1_1001238318 309
40 3300003323 rootH1_10028871 rootH1_1002887114 309
41 3300003323 rootH1_10054898 rootH1_100548987 309
42 3300003323 rootH1_10054899 rootH1_100548992 309
43 3300003323 rootH1_10157183 rootH1_101571831 309
44 3300003794 Ga0055531_10000143 Ga0055531_100001439 309
45 3300005262 Ga0065165_1003630 Ga0065165_100363010 309
46 3300005331 Ga0070670_100445321 Ga0070670_1004453212 309
47 3300005614 Ga0068856_100036568 Ga0068856_1000365684 309
48 3300006844 Ga0075428_100005184 Ga0075428_10000518414 309
49 3300006844 Ga0075428_100276907 Ga0075428_1002769072 309
50 3300009094 Ga0111539_10007466 Ga0111539_100074666 309
51 3300009094 Ga0111539_10071846 Ga0111539_100718463 309
52 3300014326 Ga0157380_10035119 Ga0157380_100351194 309
53 3300025298 Ga0209050_1001899 Ga0209050_10018992 309
54 3300025304 Ga0209257_1000005 Ga0209257_1000005977 309
55 3300026078 Ga0207702_10156468 Ga0207702_101564683 309
56 3300027907 Ga0207428_10022300 Ga0207428_100223002 309
57 3300027907 Ga0207428_10244056 Ga0207428_102440561 309
58 3300031548 Ga0307408_100036185 Ga0307408_1000361853 309
59 3300031824 Ga0307413_10024782 Ga0307413_100247824 309
60 3300032002 Ga0307416_100000457 Ga0307416_10000045720 309
61 3300032126 Ga0307415_100012448 Ga0307415_1000124483 309
62 3300042007 Ga0439449_0064049 Ga0439449_0064049_171_1100 309
63 3300042876 Ga0451577_0006063 Ga0451577_0006063_8810_9739 309
64 3300044672 Ga0466982_0063155 Ga0466982_0063155_90_1019 309
65 3300044673 Ga0453683_0165636 Ga0453683_0165636_278_1207 309
66 3300044712 Ga0453684_0000626 Ga0453684_0000626_121567_122496 309
67 3300044712 Ga0453684_0218723 Ga0453684_0218723_626_1555 309
68 3300045051 Ga0451576_0012085 Ga0451576_0012085_2697_3626 309
69 3300045051 Ga0451576_0023212 Ga0451576_0023212_256_1185 309
70 3300046460 Ga0495638_0000025 Ga0495638_0000025_333377_334306 309
71 3300049581 Ga0501047_0448895 Ga0501047_0448895_69_1001 309
72 3300049652 Ga0501202_007423 Ga0501202_007423_428_1357 309
73 3300049662 Ga0501222_007537 Ga0501222_007537_313_1242 309
74 3300049670 Ga0501236_001041 Ga0501236_001041_1584_2513 309
75 3300049674 Ga0501242_000691 Ga0501242_000691_556_1485 309
76 3300049686 Ga0501257_000687 Ga0501257_000687_4840_5769 309
77 3300049686 Ga0501257_012655 Ga0501257_012655_137_1066 309
78 3300049761 Ga0501264_000167 Ga0501264_000167_2807_3736 309
79 3300050511 nmdc:mga08y16_5956_c1 nmdc:mga08y16_5956_c1_914_1843 309
80 3300053108 Ga0500562_006968 Ga0500562_006968_1191_2120 309
81 3300053153 Ga0500616_0000024 Ga0500616_0000024_331787_332716 309
82 3300053156 Ga0500622_0000012 Ga0500622_0000012_260885_261814 309
83 3300053156 Ga0500622_0000050 Ga0500622_0000050_26846_27775 309
84 3300053158 Ga0500627_0011372 Ga0500627_0011372_2304_3233 309
85 3300003323 rootH1_10021036 rootH1_100210368 310
86 3300005547 Ga0070693_100299512 Ga0070693_1002995121 310
87 3300005834 Ga0068851_10000645 Ga0068851_100006459 310
88 3300025321 Ga0207656_10000386 Ga0207656_100003866 310
89 3300028577 Ga0265318_10011421 Ga0265318_100114212 310
90 3300028794 Ga0307515_10000007 Ga0307515_1000000789 310
91 3300028794 Ga0307515_10193736 Ga0307515_101937361 310
92 3300031238 Ga0265332_10008456 Ga0265332_100084563 310
93 3300031242 Ga0265329_10022719 Ga0265329_100227191 310
94 3300031249 Ga0265339_10036992 Ga0265339_100369923 310
95 3300031250 Ga0265331_10011427 Ga0265331_100114273 310
96 3300031344 Ga0265316_10041012 Ga0265316_100410125 310
97 3300031649 Ga0307514_10129045 Ga0307514_101290452 310
98 3300031711 Ga0265314_10028406 Ga0265314_100284065 310
99 3300031712 Ga0265342_10004396 Ga0265342_100043968 310
100 3300032004 Ga0307414_10000118 Ga0307414_1000011838 310
101 3300032004 Ga0307414_10094205 Ga0307414_100942053 310
102 3300042876 Ga0451577_0000703 Ga0451577_0000703_16413_17345 310
103 3300042876 Ga0451577_0051718 Ga0451577_0051718_1202_2164 310
104 3300042876 Ga0451577_0351608 Ga0451577_0351608_106_1038 310
105 3300044673 Ga0453683_0066421 Ga0453683_0066421_1121_2053 310
106 3300044712 Ga0453684_0001990 Ga0453684_0001990_16523_17455 310
107 3300044712 Ga0453684_0244410 Ga0453684_0244410_227_1159 310
108 3300045051 Ga0451576_0000352 Ga0451576_0000352_34965_35897 310
109 3300045051 Ga0451576_0697596 Ga0451576_0697596_84_1022 310
110 3300053088 Ga0500644_0064539 Ga0500644_0064539_119_1051 310
111 3300053156 Ga0500622_0002494 Ga0500622_0002494_12258_13190 310
112 3300005331 Ga0070670_100404147 Ga0070670_1004041471 311
113 3300014968 Ga0157379_10158756 Ga0157379_101587562 311
114 3300031251 Ga0265327_10057369 Ga0265327_100573692 311
115 3300031691 Ga0316579_10005409 Ga0316579_100054093 311
116 3300031727 Ga0316576_10008539 Ga0316576_100085392 311
117 3300031727 Ga0316576_10020796 Ga0316576_100207963 311
118 3300031727 Ga0316576_10022084 Ga0316576_100220843 311
119 3300031727 Ga0316576_10078328 Ga0316576_100783282 311
120 3300031728 Ga0316578_10003689 Ga0316578_100036895 311
121 3300031728 Ga0316578_10016438 Ga0316578_100164382 311
122 3300031728 Ga0316578_10034220 Ga0316578_100342202 311
123 3300032005 Ga0307411_10002227 Ga0307411_100022275 311
124 3300032126 Ga0307415_100338488 Ga0307415_1003384881 311
125 3300032137 Ga0316585_10002926 Ga0316585_100029263 311
126 3300032139 Ga0316580_10005923 Ga0316580_100059231 311
127 3300035398 Ga0316574_0037973 Ga0316574_0037973_1234_2172 311
128 3300036647 Ga0316582_0027612 Ga0316582_0027612_1313_2251 311
129 3300036647 Ga0316582_0047744 Ga0316582_0047744_138_1076 311
130 3300036712 Ga0316584_0115221 Ga0316584_0115221_86_1024 311
131 3300036712 Ga0316584_0246373 Ga0316584_0246373_241_1179 311
132 3300038443 Ga0395901_0081791 Ga0395901_0081791_2370_3311 311
133 3300039093 Ga0400489_02144 Ga0400489_02144_177_1115 311
134 3300039093 Ga0400489_44297 Ga0400489_44297_7577_8515 311
135 3300042876 Ga0451577_0000393 Ga0451577_0000393_56054_56989 311
136 3300042876 Ga0451577_0002268 Ga0451577_0002268_2145_3083 311
137 3300042876 Ga0451577_0002271 Ga0451577_0002271_14204_15139 311
138 3300042876 Ga0451577_0011014 Ga0451577_0011014_5864_6799 311
139 3300042876 Ga0451577_0165410 Ga0451577_0165410_144_1106 311
140 3300042876 Ga0451577_0249843 Ga0451577_0249843_100_1041 311
141 3300044673 Ga0453683_0000045 Ga0453683_0000045_108029_108964 311
142 3300044673 Ga0453683_0000759 Ga0453683_0000759_14401_15336 311
143 3300044673 Ga0453683_0001172 Ga0453683_0001172_20993_21928 311
144 3300044673 Ga0453683_0035982 Ga0453683_0035982_1314_2249 311
145 3300044673 Ga0453683_0176149 Ga0453683_0176149_139_1074 311
146 3300044673 Ga0453683_0243718 Ga0453683_0243718_95_1093 311
147 3300044712 Ga0453684_0000051 Ga0453684_0000051_289519_290454 311
148 3300044712 Ga0453684_0000226 Ga0453684_0000226_150417_151352 311
149 3300044712 Ga0453684_0000771 Ga0453684_0000771_13238_14179 311
150 3300044712 Ga0453684_0000846 Ga0453684_0000846_19711_20646 311
151 3300044712 Ga0453684_0001191 Ga0453684_0001191_23374_24309 311
152 3300044712 Ga0453684_0003727 Ga0453684_0003727_17590_18636 311
153 3300044712 Ga0453684_0004833 Ga0453684_0004833_3189_4127 311
154 3300044712 Ga0453684_0005166 Ga0453684_0005166_14810_15814 311
155 3300044712 Ga0453684_0013824 Ga0453684_0013824_11207_12142 311
156 3300044712 Ga0453684_0016572 Ga0453684_0016572_9225_10160 311
157 3300044712 Ga0453684_0030322 Ga0453684_0030322_2343_3278 311
158 3300044712 Ga0453684_0088214 Ga0453684_0088214_883_1845 311
159 3300044712 Ga0453684_0227605 Ga0453684_0227605_186_1121 311
160 3300044712 Ga0453684_0227910 Ga0453684_0227910_916_1851 311
161 3300045051 Ga0451576_0000175 Ga0451576_0000175_78462_79397 311
162 3300045051 Ga0451576_0000551 Ga0451576_0000551_56054_56989 311
163 3300045051 Ga0451576_0011699 Ga0451576_0011699_5767_6702 311
164 3300045051 Ga0451576_0021716 Ga0451576_0021716_5415_6350 311
165 3300045051 Ga0451576_0075997 Ga0451576_0075997_2296_3231 311
166 3300045051 Ga0451576_0088865 Ga0451576_0088865_1944_2879 311
167 3300045051 Ga0451576_0105549 Ga0451576_0105549_187_1149 311
168 3300001979 JGI24740J21852_10004628 JGI24740J21852_100046284 312
169 3300001989 JGI24739J22299_10000434 JGI24739J22299_100004343 312
170 3300002738 JGI25154J39366_1000001 JGI25154J39366_1000001322 312
171 3300002739 JGI25158J39367_1003260 JGI25158J39367_10032603 312
172 3300002987 JGI25159J45721_1023577 JGI25159J45721_10235771 312
173 3300003215 JGI25153J46596_10000424 JGI25153J46596_1000042412 312
174 3300003215 JGI25153J46596_10017571 JGI25153J46596_100175714 312
175 3300003316 rootH1_10077808 rootH1_100778082 312
176 3300003316 rootH1_10100871 rootH1_101008712 312
177 3300003320 rootH2_10157825 rootH2_101578255 312
178 3300003322 rootL2_10021871 rootL2_100218712 312
179 3300003323 rootH1_10220983 rootH1_102209832 312
180 3300003354 JGI25160J50197_1006162 JGI25160J50197_10061623 312
181 3300003354 JGI25160J50197_1021878 JGI25160J50197_10218782 312
182 3300003354 JGI25160J50197_1034923 JGI25160J50197_10349231 312
183 3300003761 Ga0055535_1004219 Ga0055535_10042193 312
184 3300003791 Ga0055530_10000331 Ga0055530_1000033148 312
185 3300003794 Ga0055531_10000133 Ga0055531_1000013351 312
186 3300003794 Ga0055531_10000166 Ga0055531_1000016644 312
187 3300003794 Ga0055531_10047984 Ga0055531_100479841 312
188 3300005262 Ga0065165_1000105 Ga0065165_1000105104 312
189 3300005262 Ga0065165_1028560 Ga0065165_10285601 312
190 3300005289 Ga0065704_10075115 Ga0065704_100751154 312
191 3300005293 Ga0065715_10001291 Ga0065715_100012912 312
192 3300005338 Ga0068868_100190507 Ga0068868_1001905072 312
193 3300005353 Ga0070669_100116996 Ga0070669_1001169962 312
194 3300005366 Ga0070659_100053245 Ga0070659_1000532451 312
195 3300005456 Ga0070678_100218138 Ga0070678_1002181381 312
196 3300005563 Ga0068855_100070860 Ga0068855_1000708602 312
197 3300005614 Ga0068856_100078685 Ga0068856_1000786852 312
198 3300005843 Ga0068860_100290641 Ga0068860_1002906412 312
199 3300009098 Ga0105245_10021405 Ga0105245_100214058 312
200 3300013102 Ga0157371_10107794 Ga0157371_101077942 312
201 3300013307 Ga0157372_10088464 Ga0157372_100884643 312
202 3300013308 Ga0157375_10110323 Ga0157375_101103232 312
203 3300014325 Ga0163163_10344897 Ga0163163_103448972 312
204 3300014326 Ga0157380_10024406 Ga0157380_100244062 312
205 3300015265 Ga0182005_1000076 Ga0182005_10000766 312
206 3300025208 Ga0209436_103188 Ga0209436_1031885 312
207 3300025242 Ga0209258_100041 Ga0209258_100041209 312
208 3300025246 Ga0209646_1000002 Ga0209646_1000002321 312
209 3300025246 Ga0209646_1009055 Ga0209646_10090552 312
210 3300025250 Ga0209026_1000299 Ga0209026_100029913 312
211 3300025254 Ga0209148_1000090 Ga0209148_100009026 312
212 3300025272 Ga0209455_1004635 Ga0209455_10046355 312
213 3300025273 Ga0209673_1000096 Ga0209673_1000096159 312
214 3300025284 Ga0209130_1002410 Ga0209130_10024106 312
215 3300025295 Ga0209564_1007195 Ga0209564_10071952 312
216 3300025295 Ga0209564_1025065 Ga0209564_10250652 312
217 3300025297 Ga0209758_1001095 Ga0209758_100109519 312
218 3300025298 Ga0209050_1000207 Ga0209050_100020750 312
219 3300025302 Ga0207426_1001233 Ga0207426_10012339 312
220 3300025302 Ga0207426_1002349 Ga0207426_10023497 312
221 3300025302 Ga0207426_1005766 Ga0207426_10057665 312
222 3300025304 Ga0209257_1000001 Ga0209257_10000011629 312
223 3300025304 Ga0209257_1008122 Ga0209257_10081224 312
224 3300025927 Ga0207687_10471037 Ga0207687_104710371 312
225 3300025932 Ga0207690_10035798 Ga0207690_100357984 312
226 3300026023 Ga0207677_10179270 Ga0207677_101792701 312
227 3300026078 Ga0207702_10081784 Ga0207702_100817842 312
228 3300026121 Ga0207683_10243013 Ga0207683_102430131 312
229 3300028381 Ga0268264_10257514 Ga0268264_102575142 312
230 3300028573 Ga0265334_10022224 Ga0265334_100222242 312
231 3300028577 Ga0265318_10041007 Ga0265318_100410072 312
232 3300041452 Ga0451793_1690276 Ga0451793_1690276_596_1534 312
233 3300041997 Ga0439431_0002249 Ga0439431_0002249_882_1820 312
234 3300041997 Ga0439431_0006917 Ga0439431_0006917_1014_1952 312
235 3300042007 Ga0439449_0026408 Ga0439449_0026408_400_1338 312
236 3300042876 Ga0451577_0000156 Ga0451577_0000156_113667_114611 312
237 3300045049 Ga0466959_0043773 Ga0466959_0043773_338_1279 312
238 3300046453 Ga0495627_001939 Ga0495627_001939_8687_9625 312
239 3300046475 Ga0495639_0148779 Ga0495639_0148779_159_1100 312
240 3300046558 Ga0495633_0000049 Ga0495633_0000049_58467_59405 312
241 3300046642 Ga0495634_0020034 Ga0495634_0020034_336_1277 312
242 3300048924 Ga0496121_0000030 Ga0496121_0000030_187914_188852 312
243 3300049568 Ga0501031_0004080 Ga0501031_0004080_6828_7766 312
244 3300049569 Ga0501032_0001458 Ga0501032_0001458_7741_8679 312
245 3300049569 Ga0501032_0002893 Ga0501032_0002893_4630_5568 312
246 3300049570 Ga0501033_0000065 Ga0501033_0000065_90939_91877 312
247 3300049571 Ga0501034_0000172 Ga0501034_0000172_47611_48549 312
248 3300049571 Ga0501034_0030311 Ga0501034_0030311_1869_2807 312
249 3300049573 Ga0501037_0200306 Ga0501037_0200306_296_1234 312
250 3300049574 Ga0501038_0033788 Ga0501038_0033788_3190_4128 312
251 3300049574 Ga0501038_0036697 Ga0501038_0036697_2463_3401 312
252 3300049575 Ga0501039_0001413 Ga0501039_0001413_14946_15884 312
253 3300049579 Ga0501043_0003285 Ga0501043_0003285_3625_4563 312
254 3300049581 Ga0501047_0074255 Ga0501047_0074255_1052_1990 312
255 3300049582 Ga0501048_0130927 Ga0501048_0130927_683_1621 312
256 3300049671 Ga0501238_011118 Ga0501238_011118_22_963 312
257 3300049758 Ga0501241_001472 Ga0501241_001472_3383_4321 312
258 3300049758 Ga0501241_001619 Ga0501241_001619_2092_3030 312
259 3300049822 Ga0501035_0019556 Ga0501035_0019556_1349_2287 312
260 3300049823 Ga0501044_0004255 Ga0501044_0004255_8472_9410 312
261 3300049824 Ga0501045_0000101 Ga0501045_0000101_40887_41825 312
262 3300049850 Ga0501204_002760 Ga0501204_002760_766_1704 312
263 3300050493 nmdc:mga0k408_43587_c1 nmdc:mga0k408_43587_c1_438_1376 312
264 3300053088 Ga0500644_0000693 Ga0500644_0000693_7547_8485 312
265 3300053092 Ga0500583_0043476 Ga0500583_0043476_1054_1992 312
266 3300053093 Ga0500651_0044000 Ga0500651_0044000_1283_2221 312
267 3300053131 Ga0500652_019257 Ga0500652_019257_991_1929 312
268 3300053136 Ga0500559_0015743 Ga0500559_0015743_31_969 312
269 3300053142 Ga0500577_0016746 Ga0500577_0016746_859_1797 312
270 3300053156 Ga0500622_0001608 Ga0500622_0001608_8143_9081 312
271 3300053160 Ga0500633_0042593 Ga0500633_0042593_356_1294 312
272 3300059491 Ga0587070_021259 Ga0587070_021259_124_1062 312

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00056

Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

3

142

0.98

PF02866

Ldh_1_C

lactate/malate dehydrogenase, alpha/beta C-terminal domain

145

306

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nep-assembly1.cif.gz_X 1.55a resolution structure of malate dehydrogenase from salinibacter ruber 0.9895 1 309
1uxj-assembly1.cif.gz_C-2 large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface 0.9843 2 307
1uxj-assembly1.cif.gz_A-2 large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface 0.9828 2 305
1uxk-assembly1.cif.gz_A-2 large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface 0.9825 2 303
7aob-assembly1.cif.gz_C crystal structure of thermaerobacter marianensis malate dehydrogenase 0.9816 2 303
ID Description Score Start End Superfamily
2d4aA02 Alpha Beta;Alpha-Beta Complex;L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2;Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.9864 145 303 3.90.110.10
4plhC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9809 2 144 3.40.50.720
1guyA02 Alpha Beta;Alpha-Beta Complex;L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2;Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.9804 145 303 3.90.110.10
2hjrJ02 Alpha Beta;Alpha-Beta Complex;L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2;Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.9771 145 307 3.90.110.10
2d4aA02 Alpha Beta;Alpha-Beta Complex;L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2;Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.9743 145 303 3.90.110.10
ID Description Score Start End GO Terms
AF-A0A357JJB3-F1-model_v4 Malate dehydrogenase 0.9969 1 62 GO:0016616
GO:0019752
AF-A0A7V4YUW6-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 0.9967 91 310 GO:0004459
GO:0006089
GO:0006090
GO:0030060
AF-H6L2X2-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 0.9958 2 312 GO:0004459
GO:0006089
GO:0006090
GO:0006099
GO:0030060
AF-A0A832DR98-F1-model_v4 Malate dehydrogenase 0.9954 187 303 GO:0004459
GO:0006089
GO:0006090
AF-A0A538DG05-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 0.9915 27 304 GO:0000287
GO:0004449
GO:0006099
GO:0006102
GO:0030060
GO:0051287

Feature Viewer

pLDDT pTM Quality
94.67 0.93 High
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Predicted Structure (AlphaFold2)

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