F376321

General Info

Members Datasets Scaffolds Average Seq Length
269 151 234 592

Family's Representative Sequence

Representative Sequence 3300031911|Ga0307412_10033393|Ga0307412_100333932
Length 620
Sequence METASRTIRSLTCRPRARTAETVKRLRHAFATLAACLLVFVAVVHAAPENAGNPSSAEAILARADTIKATDFVAFGHLIDDLTRFEAKLAPAERWKLRFLQGWRATWIGDYEAGRKALEDVADNANDNVLRLRATATLINLLGIGHRYQDAFMRLNQLQELMPSIRDRKARFQGLGEASQLLSSAGQFEQAEAYAREMMENPPPGETICKGAQHLLRARREANRLETLDPMYLRAIETCDAAGDDVFADSMRSDIAAFHLAHGRPAEAVKILAETRDRARSLNYPALLAEYDATLAQAYLKLGDLANARRFGLSAVAGSIRDEFTDPRRVGYGVLYQVEQQLGNAAAALAYHEKFMVADKAYLDDVGARSLAFQIVDQQLLARKAEVEALNKQNEILRLTGALDRKEVETGRLYIFVLLAGLAAIAWLVLWLRRSQLRFMKLARRDGLTGICNREHFVEQAERVLAYGARSDRGACLILFDLDHFKNVNDTYGHAVGDEVLKRAVDVCRRALHACDVFGRLGGEEFAVLLPDCSPAQARARAEQLRLSIAATSATQIRPNMVVTASFGIGGTMQCGFELHRLLVVADAALYRAKRAGRNCVFMGDTGDIPDSPYLSEARG

Samples

Sample ID Description Type Environment
1 2593339238 Luteibacter sp. UNCMF366Tsu5.1 Isolate Unclassified
2 2593339239 Luteibacter sp. UNCMF331Sha3.1 Isolate Unclassified
3 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
4 2718218334 Luteibacter rhizovicinus LJ96 Isolate Rhizosphere
5 2734482264 Dyella sp. AD052 Isolate Unclassified
6 2738543009 Luteibacter sp. OK325 Isolate Unclassified
7 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
8 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
9 2842918807 Luteibacter sp. R-73110 Isolate Unclassified
10 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
11 2895395659 Rhodanobacter sp. T12-5 Isolate Unclassified
12 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
13 2919085039 Luteibacter sp. 1214 Isolate Unclassified
14 2919404418 Luteibacter sp. 3190 Isolate Unclassified
15 2939611941 Rhodanobacter soli 1757 Isolate Rhizosphere
16 2941471342 Luteibacter sp. 621 Isolate Unclassified
17 2953994433 Luteibacter sp. W1I16 Isolate Rhizosphere
18 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
19 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
20 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
21 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
22 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
23 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
24 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
25 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
26 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
27 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
28 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
29 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
30 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
31 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
32 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
33 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
34 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
35 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
36 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
37 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
38 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
39 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
40 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
41 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
42 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
43 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
44 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
45 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
46 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
56 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
57 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
58 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
59 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
60 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
64 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
70 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
71 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
72 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
76 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
98 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
99 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
100 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
101 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
102 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
103 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
104 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
105 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
106 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
107 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
108 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
109 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
110 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
111 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
112 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
113 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
114 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
115 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
116 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
117 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
118 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
119 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
120 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
121 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
122 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
123 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
124 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
125 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
126 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
127 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
128 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
129 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
130 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
131 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
132 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
133 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
134 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
135 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
136 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
137 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
138 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
139 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
140 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
141 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
142 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
143 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
144 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
149 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
150 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
151 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.08
Metatranscriptomes 0.74
Isolates 8.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.47
Nodule 0
Rhizoplane 0.74
Rhizosphere 66.91
Stem 0
Stem Tuber 0
Unclassified 14.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25156J39149_1002859 3300002705 Bacteria 5920
2 JGI25156J39149_1006185 3300002705 Bacteria 3311
3 JGI25162J39368_1001014 3300002737 Bacteria 17524
4 JGI25154J39366_1003681 3300002738 Bacteria 3091
5 JGI25157J39369_1000478 3300002741 Bacteria 25153
6 JGI25157J39369_1002680 3300002741 Bacteria 4148
7 JGI25164J39214_1000217 3300002772 Bacteria 46995
8 JGI25165J46597_1000453 3300003214 Bacteria 41271
9 Ga0006562J51391_1105724 3300003578 Bacteria 4450
10 Ga0006562J51391_1105726 3300003578 Bacteria 3610
11 Ga0055527_1000061 3300003760 Bacteria 91171
12 Ga0055527_1000484 3300003760 Bacteria 14407
13 Ga0055535_1000102 3300003761 Bacteria 92203
14 Ga0055535_1000668 3300003761 Bacteria 27099
15 Ga0055535_1001259 3300003761 Bacteria 13960
16 Ga0055535_1001680 3300003761 Bacteria 10150
17 Ga0055542_1000097 3300003762 Bacteria 118227
18 Ga0055542_1000147 3300003762 Bacteria 88503
19 Ga0055542_1000619 3300003762 Bacteria 30088
20 Ga0055529_1000116 3300003763 Bacteria 117929
21 Ga0055529_1000157 3300003763 Bacteria 93119
22 Ga0065165_1000096 3300005262 Bacteria 144938
23 Ga0065165_1000199 3300005262 Bacteria 104204
24 Ga0070658_10002519 3300005327 Bacteria 15291
25 Ga0070666_10000001 3300005335 Bacteria 543080
26 Ga0070682_100002409 3300005337 Bacteria 10357
27 Ga0070682_100009809 3300005337 Bacteria 5421
28 Ga0070660_100007096 3300005339 Bacteria 7787
29 Ga0070660_100033056 3300005339 Bacteria 3896
30 Ga0070661_100013455 3300005344 Bacteria 5742
31 Ga0070661_100014532 3300005344 Bacteria 5548
32 Ga0070692_10029031 3300005345 Bacteria 2755
33 Ga0070668_100022392 3300005347 Bacteria 4776
34 Ga0070659_100000764 3300005366 Bacteria 23367
35 Ga0070659_100005091 3300005366 Bacteria 9428
36 Ga0070659_100006279 3300005366 Bacteria 8589
37 Ga0070667_100055265 3300005367 Bacteria 3353
38 Ga0070714_100000079 3300005435 Bacteria 82899
39 Ga0070714_100003909 3300005435 Bacteria 11196
40 Ga0070694_100073115 3300005444 Bacteria 2367
41 Ga0070681_10008749 3300005458 Bacteria 9933
42 Ga0068853_100010584 3300005539 Bacteria 7460
43 Ga0070696_100071397 3300005546 Bacteria 2443
44 Ga0070665_100048217 3300005548 Bacteria 4277
45 Ga0068855_100016866 3300005563 Bacteria 8783
46 Ga0068856_100003577 3300005614 Bacteria 15633
47 Ga0068860_100047921 3300005843 Bacteria 4073
48 Ga0105241_10010719 3300009174 Bacteria 6727
49 Ga0105238_10002466 3300009551 Bacteria 18519
50 Ga0105238_10003056 3300009551 Bacteria 16687
51 Ga0105238_10017231 3300009551 Bacteria 7340
52 Ga0105238_10038430 3300009551 Bacteria 4861
53 Ga0157373_10001190 3300013100 Bacteria 19903
54 Ga0157373_10052918 3300013100 Bacteria 2887
55 Ga0157371_10007374 3300013102 Bacteria 8910
56 Ga0157370_10000793 3300013104 Bacteria 39742
57 Ga0157370_10001148 3300013104 Bacteria 33003
58 Ga0157370_10026186 3300013104 Bacteria 5762
59 Ga0157370_10042565 3300013104 Bacteria 4375
60 Ga0157370_10059293 3300013104 Bacteria 3637
61 Ga0157369_10000824 3300013105 Bacteria 39586
62 Ga0157372_10003322 3300013307 Bacteria 17379
63 Ga0182008_10008051 3300014497 Bacteria 5776
64 Ga0182008_10011926 3300014497 Bacteria 4606
65 Ga0182006_1000098 3300015261 Bacteria 101707
66 Ga0182006_1000201 3300015261 Bacteria 61463
67 Ga0182006_1001412 3300015261 Bacteria 14522
68 Ga0182006_1012058 3300015261 Bacteria 3786
69 Ga0182007_10008512 3300015262 Bacteria 4207
70 Ga0182007_10026637 3300015262 Bacteria 2001
71 Ga0182005_1001488 3300015265 Bacteria 9360
72 Ga0182005_1001684 3300015265 Bacteria 8551
73 Ga0182005_1001753 3300015265 Bacteria 8352
74 Ga0163161_10022772 3300017792 Bacteria 4414
75 Ga0209674_100086 3300025226 Bacteria 187776
76 Ga0209674_100689 3300025226 Bacteria 11835
77 Ga0209674_101165 3300025226 Bacteria 7609
78 Ga0209672_100029 3300025228 Bacteria 339298
79 Ga0209672_100045 3300025228 Bacteria 264926
80 Ga0209672_100207 3300025228 Bacteria 46534
81 Ga0207427_100228 3300025231 Bacteria 47076
82 Ga0209437_100370 3300025233 Bacteria 47076
83 Ga0209437_100860 3300025233 Bacteria 12844
84 Ga0209437_101260 3300025233 Bacteria 6951
85 Ga0209258_100053 3300025242 Bacteria 339233
86 Ga0209258_100111 3300025242 Bacteria 197019
87 Ga0209258_100200 3300025242 Bacteria 123379
88 Ga0209646_1001241 3300025246 Bacteria 7259
89 Ga0209026_1000589 3300025250 Bacteria 23701
90 Ga0209677_102353 3300025253 Bacteria 7236
91 Ga0209148_1000009 3300025254 Bacteria 1395625
92 Ga0209148_1000045 3300025254 Bacteria 448076
93 Ga0209148_1000099 3300025254 Bacteria 227713
94 Ga0209148_1001138 3300025254 Bacteria 15537
95 Ga0209759_1000247 3300025256 Bacteria 80850
96 Ga0209129_1000792 3300025258 Bacteria 19956
97 Ga0209129_1001353 3300025258 Bacteria 13844
98 Ga0209233_1000336 3300025261 Bacteria 47076
99 Ga0209455_1000035 3300025272 Bacteria 479071
100 Ga0209455_1000060 3300025272 Bacteria 339298
101 Ga0209455_1008320 3300025272 Bacteria 2829
102 Ga0209758_1014810 3300025297 Bacteria 4107
103 Ga0209256_1011958 3300025299 Bacteria 3397
104 Ga0207426_1007555 3300025302 Bacteria 4531
105 Ga0209051_1001657 3300025303 Bacteria 17977
106 Ga0207680_10000003 3300025903 Bacteria 925264
107 Ga0207647_10000414 3300025904 Bacteria 35116
108 Ga0207705_10002526 3300025909 Bacteria 14100
109 Ga0207657_10010199 3300025919 Bacteria 9386
110 Ga0207657_10018290 3300025919 Bacteria 6699
111 Ga0207649_10024419 3300025920 Bacteria 3513
112 Ga0207652_10081871 3300025921 Bacteria 2824
113 Ga0207694_10000068 3300025924 Bacteria 126377
114 Ga0207694_10006875 3300025924 Bacteria 8642
115 Ga0207694_10015518 3300025924 Bacteria 5744
116 Ga0207694_10021817 3300025924 Bacteria 4854
117 Ga0207664_10000036 3300025929 Bacteria 173396
118 Ga0207690_10002850 3300025932 Bacteria 10427
119 Ga0207690_10003209 3300025932 Bacteria 9815
120 Ga0207690_10032655 3300025932 Bacteria 3342
121 Ga0207667_10001689 3300025949 Bacteria 27781
122 Ga0207639_10028835 3300026041 Bacteria 4057
123 Ga0207639_10042286 3300026041 Bacteria 3414
124 Ga0207702_10003538 3300026078 Bacteria 14221
125 Ga0268266_10000011 3300028379 Bacteria 757403
126 Ga0268264_10037793 3300028381 Bacteria 3982
127 Ga0307412_10000221 3300031911 Bacteria 38318
128 Ga0307412_10033393 3300031911 Bacteria 3270
129 Ga0395899_0000068 3300037312 Bacteria 202264
130 Ga0395899_0057281 3300037312 Bacteria 2877
131 Ga0395899_0064233 3300037312 Bacteria 2699
132 Ga0395899_0104103 3300037312 Bacteria 2046
133 Ga0395900_0000012 3300037418 Bacteria 401198
134 Ga0395900_0131230 3300037418 Bacteria 2567
135 Ga0395900_0139341 3300037418 Bacteria 2484
136 Ga0395898_0000278 3300037466 Bacteria 124490
137 Ga0395898_0001228 3300037466 Bacteria 38500
138 Ga0395898_0004800 3300037466 Bacteria 14713
139 Ga0395905_0055313 3300037471 Bacteria 3714
140 Ga0395901_0007529 3300038443 Bacteria 10995
141 Ga0395901_0008721 3300038443 Bacteria 10247
142 Ga0395901_0013541 3300038443 Bacteria 8293
143 Ga0395901_0036872 3300038443 Bacteria 5055
144 Ga0395901_0077069 3300038443 Bacteria 3479
145 Ga0439436_0000003 3300041404 Bacteria 186684
146 Ga0439436_0000008 3300041404 Bacteria 112977
147 Ga0439465_0000156 3300041413 Bacteria 16975
148 Ga0450908_000002 3300042184 Bacteria 94473
149 Ga0450908_000114 3300042184 Bacteria 16529
150 Ga0466982_0000093 3300044672 Bacteria 21924
151 Ga0466982_0000525 3300044672 Bacteria 11383
152 Ga0466961_0002534 3300044693 Bacteria 11327
153 Ga0466961_0006590 3300044693 Bacteria 7380
154 Ga0466961_0020340 3300044693 Bacteria 4269
155 Ga0466961_0021821 3300044693 Bacteria 4119
156 Ga0466971_0007964 3300044719 Bacteria 4618
157 Ga0466971_0012108 3300044719 Bacteria 3780
158 Ga0466968_0000647 3300044735 Bacteria 11914
159 Ga0466970_0003481 3300044765 Bacteria 7674
160 Ga0466957_0003046 3300044842 Bacteria 9110
161 Ga0466959_0004515 3300045049 Bacteria 9332
162 Ga0466959_0004950 3300045049 Bacteria 9025
163 Ga0466959_0006151 3300045049 Bacteria 8294
164 Ga0466959_0052610 3300045049 Bacteria 2981
165 Ga0466958_0016743 3300045836 Bacteria 4226
166 Ga0495617_000073 3300046452 Bacteria 80606
167 Ga0495617_005404 3300046452 Bacteria 4533
168 Ga0495638_0000122 3300046460 Bacteria 125872
169 Ga0495650_0000473 3300046471 Bacteria 61706
170 Ga0495650_0008049 3300046471 Bacteria 6223
171 Ga0495584_0004599 3300046491 Bacteria 7394
172 Ga0495585_0000423 3300046492 Bacteria 40748
173 Ga0495585_0002365 3300046492 Bacteria 13537
174 Ga0495607_0001395 3300046501 Bacteria 21511
175 Ga0495607_0001986 3300046501 Bacteria 17209
176 Ga0495607_0012783 3300046501 Bacteria 5524
177 Ga0495606_0001107 3300046507 Bacteria 38560
178 Ga0495606_0004177 3300046507 Bacteria 14638
179 Ga0495606_0007961 3300046507 Bacteria 9328
180 Ga0495610_0000312 3300046512 Bacteria 51562
181 Ga0495616_0000067 3300046513 Bacteria 89610
182 Ga0495620_0001584 3300046515 Bacteria 13468
183 Ga0495631_0000672 3300046518 Bacteria 22044
184 Ga0495631_0001947 3300046518 Bacteria 12111
185 Ga0495632_0000046 3300046519 Bacteria 139365
186 Ga0495632_0022594 3300046519 Bacteria 3369
187 Ga0495648_0021357 3300046524 Bacteria 4484
188 Ga0495668_0044507 3300046616 Bacteria 2467
189 Ga0495611_0000001 3300046648 Bacteria 2628469
190 Ga0495611_0001052 3300046648 Bacteria 14586
191 Ga0495625_0000001 3300046660 Bacteria 1641829
192 Ga0495625_0011167 3300046660 Bacteria 7346
193 Ga0495661_0006909 3300046665 Bacteria 7937
194 Ga0495670_0000461 3300046691 Bacteria 19441
195 Ga0495670_0001933 3300046691 Bacteria 10213
196 Ga0495670_0002000 3300046691 Bacteria 10022
197 Ga0495670_0002750 3300046691 Bacteria 8697
198 Ga0495671_0000075 3300046692 Bacteria 96084
199 Ga0495649_0019952 3300046694 Bacteria 3762
200 Ga0495589_0000186 3300046794 Bacteria 55044
201 Ga0495660_0000411 3300046810 Bacteria 36503
202 Ga0495660_0000801 3300046810 Bacteria 23607
203 Ga0495683_0002211 3300047323 Bacteria 11902
204 Ga0495679_000029 3300047446 Bacteria 190883
205 Ga0495673_0000001 3300047469 Bacteria 1630730
206 Ga0495673_0000018 3300047469 Bacteria 569190
207 Ga0495673_0001995 3300047469 Bacteria 15038
208 Ga0495686_0000043 3300047472 Bacteria 291565
209 Ga0495686_0003675 3300047472 Bacteria 13116
210 Ga0495686_0020041 3300047472 Bacteria 4462
211 Ga0496101_0020592 3300048904 Bacteria 4518
212 Ga0496106_0001198 3300048909 Bacteria 19339
213 Ga0496117_0075546 3300048920 Bacteria 2238
214 Ga0496118_0001385 3300048921 Bacteria 36545
215 Ga0496118_0007674 3300048921 Bacteria 11347
216 Ga0496119_0012998 3300048922 Bacteria 6688
217 Ga0496121_0000045 3300048924 Bacteria 336130
218 Ga0496121_0007078 3300048924 Bacteria 13619
219 Ga0496121_0008780 3300048924 Bacteria 11786
220 Ga0496123_0020685 3300048926 Bacteria 5141
221 Ga0496123_0069141 3300048926 Bacteria 2219
222 Ga0496125_0003442 3300048928 Bacteria 19172
223 Ga0496126_0030640 3300048929 Bacteria 5093
224 Ga0495678_000090 3300049459 Bacteria 114550
225 Ga0501031_0050493 3300049568 Bacteria 2710
226 Ga0501047_0035521 3300049581 Bacteria 4815
227 Ga0501035_0016810 3300049822 Bacteria 6745
228 Ga0501044_0024793 3300049823 Bacteria 6363
229 Ga0501044_0226712 3300049823 Bacteria 1818
230 Ga0500643_000002 3300053087 Bacteria 1277657
231 Ga0500555_000582 3300053103 Bacteria 14406
232 Ga0500645_000306 3300053730 Bacteria 34960
233 Ga0466962_0002226 3300061719 Bacteria 9174
234 Ga0466962_0002744 3300061719 Bacteria 8367

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300025924 Ga0207694_10021817 Ga0207694_100218172 527
2 3300009551 Ga0105238_10038430 Ga0105238_100384302 534
3 3300037466 Ga0395898_0004800 Ga0395898_0004800_2294_3955 539
4 3300038443 Ga0395901_0013541 Ga0395901_0013541_5419_7080 539
5 3300044735 Ga0466968_0000647 Ga0466968_0000647_9590_11398 540
6 3300049823 Ga0501044_0226712 Ga0501044_0226712_153_1781 541
7 3300047472 Ga0495686_0003675 Ga0495686_0003675_11118_12890 551
8 3300046452 Ga0495617_000073 Ga0495617_000073_8647_10401 556
9 3300046491 Ga0495584_0004599 Ga0495584_0004599_2870_4693 556
10 3300046492 Ga0495585_0002365 Ga0495585_0002365_3706_5529 556
11 3300046507 Ga0495606_0001107 Ga0495606_0001107_17583_19406 556
12 3300046515 Ga0495620_0001584 Ga0495620_0001584_11413_13167 556
13 3300047323 Ga0495683_0002211 Ga0495683_0002211_2371_4194 556
14 3300047472 Ga0495686_0020041 Ga0495686_0020041_848_2671 556
15 3300048924 Ga0496121_0008780 Ga0496121_0008780_9023_10846 556
16 3300025924 Ga0207694_10015518 Ga0207694_100155184 560
17 3300037312 Ga0395899_0057281 Ga0395899_0057281_434_2200 560
18 3300037418 Ga0395900_0139341 Ga0395900_0139341_678_2444 560
19 3300037471 Ga0395905_0055313 Ga0395905_0055313_1514_3280 560
20 3300038443 Ga0395901_0008721 Ga0395901_0008721_3061_4827 560
21 3300047472 Ga0495686_0000043 Ga0495686_0000043_151456_153222 560
22 3300048920 Ga0496117_0075546 Ga0496117_0075546_53_1819 560
23 3300048921 Ga0496118_0001385 Ga0496118_0001385_4089_5855 560
24 3300046507 Ga0495606_0004177 Ga0495606_0004177_991_2760 561
25 3300048926 Ga0496123_0069141 Ga0496123_0069141_428_2170 562
26 3300015261 Ga0182006_1012058 Ga0182006_10120582 563
27 3300015262 Ga0182007_10008512 Ga0182007_100085124 563
28 3300005435 Ga0070714_100003909 Ga0070714_1000039092 564
29 3300013104 Ga0157370_10000793 Ga0157370_1000079330 564
30 3300015262 Ga0182007_10026637 Ga0182007_100266371 564
31 3300017792 Ga0163161_10022772 Ga0163161_100227724 564
32 3300025226 Ga0209674_101165 Ga0209674_1011654 564
33 3300025233 Ga0209437_101260 Ga0209437_1012602 564
34 3300025303 Ga0209051_1001657 Ga0209051_10016571 564
35 iso_pu_bacteria 2718218334 2721026905 564
36 3300025254 Ga0209148_1001138 Ga0209148_100113813 565
37 3300046512 Ga0495610_0000312 Ga0495610_0000312_7562_9274 565
38 3300013100 Ga0157373_10052918 Ga0157373_100529184 566
39 3300009174 Ga0105241_10010719 Ga0105241_100107192 567
40 3300009551 Ga0105238_10002466 Ga0105238_1000246611 567
41 3300013100 Ga0157373_10001190 Ga0157373_1000119011 567
42 3300013104 Ga0157370_10026186 Ga0157370_100261861 567
43 3300013307 Ga0157372_10003322 Ga0157372_100033228 567
44 3300037312 Ga0395899_0104103 Ga0395899_0104103_300_2006 567
45 3300037418 Ga0395900_0131230 Ga0395900_0131230_94_1800 567
46 3300038443 Ga0395901_0007529 Ga0395901_0007529_8044_9750 567
47 3300046452 Ga0495617_005404 Ga0495617_005404_218_2041 567
48 3300046460 Ga0495638_0000122 Ga0495638_0000122_4695_6518 567
49 3300046501 Ga0495607_0001395 Ga0495607_0001395_6122_7945 567
50 3300046648 Ga0495611_0000001 Ga0495611_0000001_1740012_1741835 567
51 3300046660 Ga0495625_0000001 Ga0495625_0000001_174216_176039 567
52 3300046691 Ga0495670_0002000 Ga0495670_0002000_7878_9701 567
53 3300046692 Ga0495671_0000075 Ga0495671_0000075_80265_82088 567
54 3300046794 Ga0495589_0000186 Ga0495589_0000186_34751_36574 567
55 3300046810 Ga0495660_0000411 Ga0495660_0000411_13743_15566 567
56 3300047446 Ga0495679_000029 Ga0495679_000029_35137_36960 567
57 3300047469 Ga0495673_0001995 Ga0495673_0001995_11765_13588 567
58 3300049459 Ga0495678_000090 Ga0495678_000090_97749_99572 567
59 3300053087 Ga0500643_000002 Ga0500643_000002_78561_80384 567
60 3300053103 Ga0500555_000582 Ga0500555_000582_1608_3431 567
61 3300005435 Ga0070714_100000079 Ga0070714_10000007949 568
62 3300025929 Ga0207664_10000036 Ga0207664_10000036116 568
63 3300005337 Ga0070682_100009809 Ga0070682_1000098094 570
64 3300005339 Ga0070660_100033056 Ga0070660_1000330562 570
65 3300005366 Ga0070659_100000764 Ga0070659_10000076415 570
66 3300005458 Ga0070681_10008749 Ga0070681_100087497 570
67 3300025919 Ga0207657_10018290 Ga0207657_100182903 570
68 3300025932 Ga0207690_10002850 Ga0207690_100028502 570
69 3300025921 Ga0207652_10081871 Ga0207652_100818712 572
70 3300037312 Ga0395899_0064233 Ga0395899_0064233_206_1969 572
71 3300046471 Ga0495650_0008049 Ga0495650_0008049_1968_3791 572
72 3300046513 Ga0495616_0000067 Ga0495616_0000067_62334_64157 572
73 3300046518 Ga0495631_0000672 Ga0495631_0000672_1783_3606 572
74 3300046519 Ga0495632_0022594 Ga0495632_0022594_682_2505 572
75 3300046648 Ga0495611_0001052 Ga0495611_0001052_2031_3854 572
76 3300046691 Ga0495670_0002750 Ga0495670_0002750_1830_3653 572
77 3300047469 Ga0495673_0000018 Ga0495673_0000018_432442_434265 572
78 3300009551 Ga0105238_10017231 Ga0105238_100172313 573
79 3300013104 Ga0157370_10001148 Ga0157370_1000114810 573
80 3300015261 Ga0182006_1000201 Ga0182006_10002014 574
81 3300046492 Ga0495585_0000423 Ga0495585_0000423_25323_27146 574
82 3300046518 Ga0495631_0001947 Ga0495631_0001947_9035_10858 574
83 3300046524 Ga0495648_0021357 Ga0495648_0021357_1353_3176 574
84 3300046616 Ga0495668_0044507 Ga0495668_0044507_628_2451 574
85 3300046665 Ga0495661_0006909 Ga0495661_0006909_3370_5193 574
86 3300046810 Ga0495660_0000801 Ga0495660_0000801_19434_21257 574
87 3300047469 Ga0495673_0000001 Ga0495673_0000001_120984_122807 574
88 3300048909 Ga0496106_0001198 Ga0496106_0001198_10450_12288 574
89 3300048924 Ga0496121_0007078 Ga0496121_0007078_10595_12418 574
90 3300053730 Ga0500645_000306 Ga0500645_000306_17388_19211 574
91 iso_pu_bacteria 2895395659 2895396773 574
92 3300005339 Ga0070660_100007096 Ga0070660_1000070962 575
93 3300005366 Ga0070659_100005091 Ga0070659_1000050913 575
94 3300025919 Ga0207657_10010199 Ga0207657_100101993 575
95 3300025932 Ga0207690_10003209 Ga0207690_100032093 575
96 3300005344 Ga0070661_100013455 Ga0070661_1000134554 576
97 3300013104 Ga0157370_10042565 Ga0157370_100425653 576
98 3300013105 Ga0157369_10000824 Ga0157369_1000082416 576
99 3300025904 Ga0207647_10000414 Ga0207647_100004149 576
100 3300048921 Ga0496118_0007674 Ga0496118_0007674_8265_10061 576
101 3300048924 Ga0496121_0000045 Ga0496121_0000045_10477_12273 576
102 3300048928 Ga0496125_0003442 Ga0496125_0003442_8765_10561 576
103 3300049568 Ga0501031_0050493 Ga0501031_0050493_305_2092 577
104 3300049581 Ga0501047_0035521 Ga0501047_0035521_1431_3206 577
105 3300049822 Ga0501035_0016810 Ga0501035_0016810_804_2579 577
106 3300042184 Ga0450908_000002 Ga0450908_000002_89517_91340 578
107 3300009551 Ga0105238_10017231 Ga0105238_100172316 579
108 3300005262 Ga0065165_1000096 Ga0065165_100009680 580
109 3300013104 Ga0157370_10001148 Ga0157370_1000114813 581
110 iso_pu_bacteria 2593339238 2595446467 581
111 iso_pu_bacteria 2818991440 2819565258 583
112 iso_pu_bacteria 2904463128 2904466927 583
113 iso_pu_bacteria 2939611941 2939614440 583
114 iso_pu_bacteria 2643221562 2643830760 584
115 3300046660 Ga0495625_0011167 Ga0495625_0011167_873_2645 585
116 iso_pu_bacteria 2842918807 2842919457 585
117 iso_pu_bacteria 2919404418 2919405113 585
118 3300025258 Ga0209129_1000792 Ga0209129_100079215 586
119 3300025297 Ga0209758_1014810 Ga0209758_10148103 586
120 3300025302 Ga0207426_1007555 Ga0207426_10075555 586
121 iso_pu_bacteria 2919085039 2919088996 586
122 3300046501 Ga0495607_0012783 Ga0495607_0012783_1254_3059 587
123 3300046507 Ga0495606_0007961 Ga0495606_0007961_6516_8321 587
124 iso_pu_bacteria 2884338543 2884341144 587
125 iso_pu_bacteria 2941471342 2941472594 587
126 3300005337 Ga0070682_100002409 Ga0070682_1000024099 588
127 3300005345 Ga0070692_10029031 Ga0070692_100290312 588
128 3300005366 Ga0070659_100006279 Ga0070659_1000062798 588
129 3300005539 Ga0068853_100010584 Ga0068853_1000105842 588
130 3300005563 Ga0068855_100016866 Ga0068855_1000168662 588
131 3300013104 Ga0157370_10059293 Ga0157370_100592931 588
132 3300014497 Ga0182008_10011926 Ga0182008_100119262 588
133 3300015261 Ga0182006_1001412 Ga0182006_100141214 588
134 3300015265 Ga0182005_1001488 Ga0182005_10014881 588
135 3300015265 Ga0182005_1001684 Ga0182005_10016843 588
136 3300025924 Ga0207694_10006875 Ga0207694_100068752 588
137 3300025932 Ga0207690_10032655 Ga0207690_100326551 588
138 3300025949 Ga0207667_10001689 Ga0207667_100016899 588
139 3300026041 Ga0207639_10028835 Ga0207639_100288354 588
140 3300041404 Ga0439436_0000008 Ga0439436_0000008_66897_68693 588
141 3300042184 Ga0450908_000114 Ga0450908_000114_9342_11141 588
142 3300044672 Ga0466982_0000525 Ga0466982_0000525_9320_11119 588
143 3300046691 Ga0495670_0000461 Ga0495670_0000461_3068_4864 588
144 3300046694 Ga0495649_0019952 Ga0495649_0019952_1372_3168 588
145 3300048904 Ga0496101_0020592 Ga0496101_0020592_2047_3852 588
146 3300048922 Ga0496119_0012998 Ga0496119_0012998_1176_2972 588
147 3300048926 Ga0496123_0020685 Ga0496123_0020685_1383_3188 588
148 iso_pu_bacteria 2734482264 2735837546 588
149 iso_pu_bacteria 2738543009 2739228151 588
150 iso_pu_bacteria 2842914999 2842917440 588
151 3300046519 Ga0495632_0000046 Ga0495632_0000046_114525_116345 589
152 3300005337 Ga0070682_100002409 Ga0070682_1000024096 591
153 3300005366 Ga0070659_100006279 Ga0070659_1000062795 591
154 3300005444 Ga0070694_100073115 Ga0070694_1000731152 591
155 3300005539 Ga0068853_100010584 Ga0068853_1000105845 591
156 3300005546 Ga0070696_100071397 Ga0070696_1000713972 591
157 3300005563 Ga0068855_100016866 Ga0068855_1000168664 591
158 3300009174 Ga0105241_10010719 Ga0105241_100107195 591
159 3300009551 Ga0105238_10002466 Ga0105238_1000246614 591
160 3300013100 Ga0157373_10001190 Ga0157373_1000119014 591
161 3300013102 Ga0157371_10007374 Ga0157371_100073744 591
162 3300013104 Ga0157370_10026186 Ga0157370_100261864 591
163 3300013307 Ga0157372_10003322 Ga0157372_100033225 591
164 3300025924 Ga0207694_10006875 Ga0207694_100068754 591
165 3300025949 Ga0207667_10001689 Ga0207667_100016897 591
166 3300026041 Ga0207639_10042286 Ga0207639_100422864 591
167 3300038443 Ga0395901_0036872 Ga0395901_0036872_2111_3889 591
168 3300046501 Ga0495607_0001986 Ga0495607_0001986_13448_15289 591
169 3300049823 Ga0501044_0024793 Ga0501044_0024793_4415_6193 591
170 3300003760 Ga0055527_1000061 Ga0055527_10000618 593
171 3300003760 Ga0055527_1000484 Ga0055527_10004849 593
172 3300003761 Ga0055535_1000668 Ga0055535_10006688 593
173 3300003761 Ga0055535_1001259 Ga0055535_10012599 593
174 3300003762 Ga0055542_1000097 Ga0055542_10000979 593
175 3300003763 Ga0055529_1000157 Ga0055529_10001579 593
176 3300005614 Ga0068856_100003577 Ga0068856_10000357711 593
177 3300025228 Ga0209672_100029 Ga0209672_100029175 593
178 3300025242 Ga0209258_100053 Ga0209258_100053155 593
179 3300025254 Ga0209148_1000009 Ga0209148_1000009175 593
180 3300025272 Ga0209455_1000060 Ga0209455_1000060175 593
181 3300026078 Ga0207702_10003538 Ga0207702_100035385 593
182 3300031911 Ga0307412_10033393 Ga0307412_100333932 593
183 iso_pu_bacteria 2593339239 2595452004 593
184 iso_pu_bacteria 2953994433 2953998075 593
185 3300003578 Ga0006562J51391_1105724 Ga0006562J51391_11057244 594
186 3300003578 Ga0006562J51391_1105726 Ga0006562J51391_11057262 594
187 3300037312 Ga0395899_0000068 Ga0395899_0000068_35795_37654 594
188 3300037466 Ga0395898_0000278 Ga0395898_0000278_111800_113659 594
189 3300038443 Ga0395901_0077069 Ga0395901_0077069_179_2038 594
190 3300045049 Ga0466959_0052610 Ga0466959_0052610_500_2299 594
191 iso_pu_bacteria 2842918807 2842922327 594
192 iso_pu_bacteria 2953994433 2953996788 594
193 iso_pu_bacteria 2593339239 2595450490 597
194 3300014497 Ga0182008_10008051 Ga0182008_100080513 598
195 3300015261 Ga0182006_1000098 Ga0182006_100009855 598
196 3300015265 Ga0182005_1001753 Ga0182005_10017532 598
197 3300031911 Ga0307412_10000221 Ga0307412_1000022118 598
198 3300041404 Ga0439436_0000003 Ga0439436_0000003_140398_142212 598
199 3300041413 Ga0439465_0000156 Ga0439465_0000156_7950_9770 598
200 3300046691 Ga0495670_0001933 Ga0495670_0001933_499_2313 598
201 iso_pu_bacteria 2919404418 2919407582 599
202 3300005327 Ga0070658_10002519 Ga0070658_100025198 600
203 3300005335 Ga0070666_10000001 Ga0070666_10000001309 600
204 3300005344 Ga0070661_100014532 Ga0070661_1000145322 600
205 3300005347 Ga0070668_100022392 Ga0070668_1000223923 600
206 3300005367 Ga0070667_100055265 Ga0070667_1000552652 600
207 3300005548 Ga0070665_100048217 Ga0070665_1000482174 600
208 3300005843 Ga0068860_100047921 Ga0068860_1000479212 600
209 3300009551 Ga0105238_10003056 Ga0105238_100030567 600
210 3300025903 Ga0207680_10000003 Ga0207680_10000003354 600
211 3300025909 Ga0207705_10002526 Ga0207705_100025263 600
212 3300025920 Ga0207649_10024419 Ga0207649_100244193 600
213 3300025924 Ga0207694_10000068 Ga0207694_1000006818 600
214 3300028379 Ga0268266_10000011 Ga0268266_10000011300 600
215 3300028381 Ga0268264_10037793 Ga0268264_100377934 600
216 3300044672 Ga0466982_0000093 Ga0466982_0000093_6646_8475 600
217 3300046471 Ga0495650_0000473 Ga0495650_0000473_24001_25818 600
218 3300048929 Ga0496126_0030640 Ga0496126_0030640_1704_3521 600
219 3300025258 Ga0209129_1001353 Ga0209129_10013532 601
220 3300025299 Ga0209256_1011958 Ga0209256_10119583 601
221 iso_pu_bacteria 2593339238 2595449204 601
222 3300025226 Ga0209674_100086 Ga0209674_10008663 602
223 3300025226 Ga0209674_100689 Ga0209674_1006893 602
224 3300025233 Ga0209437_100860 Ga0209437_1008603 602
225 3300025253 Ga0209677_102353 Ga0209677_1023536 602
226 3300044693 Ga0466961_0002534 Ga0466961_0002534_4081_5940 602
227 3300045049 Ga0466959_0006151 Ga0466959_0006151_1743_3602 602
228 3300005262 Ga0065165_1000199 Ga0065165_100019951 603
229 3300002705 JGI25156J39149_1006185 JGI25156J39149_10061853 606
230 3300002737 JGI25162J39368_1001014 JGI25162J39368_100101413 606
231 3300002738 JGI25154J39366_1003681 JGI25154J39366_10036812 606
232 3300002741 JGI25157J39369_1002680 JGI25157J39369_10026802 606
233 3300002772 JGI25164J39214_1000217 JGI25164J39214_10002176 606
234 3300003214 JGI25165J46597_1000453 JGI25165J46597_100045339 606
235 3300003761 Ga0055535_1001680 Ga0055535_100168011 606
236 3300003762 Ga0055542_1000619 Ga0055542_10006196 606
237 3300003763 Ga0055529_1000116 Ga0055529_10001166 606
238 3300025228 Ga0209672_100045 Ga0209672_1000456 606
239 3300025231 Ga0207427_100228 Ga0207427_1002286 606
240 3300025233 Ga0209437_100370 Ga0209437_10037045 606
241 3300025242 Ga0209258_100200 Ga0209258_100200116 606
242 3300025246 Ga0209646_1001241 Ga0209646_10012415 606
243 3300025250 Ga0209026_1000589 Ga0209026_10005896 606
244 3300025254 Ga0209148_1000045 Ga0209148_1000045399 606
245 3300025256 Ga0209759_1000247 Ga0209759_10002476 606
246 3300025261 Ga0209233_1000336 Ga0209233_10003366 606
247 3300025272 Ga0209455_1000035 Ga0209455_1000035400 606
248 3300044765 Ga0466970_0003481 Ga0466970_0003481_2154_4013 606
249 3300044842 Ga0466957_0003046 Ga0466957_0003046_3591_5450 606
250 3300003761 Ga0055535_1000102 Ga0055535_100010271 607
251 3300003762 Ga0055542_1000147 Ga0055542_100014747 607
252 3300025228 Ga0209672_100207 Ga0209672_10020724 607
253 3300025242 Ga0209258_100111 Ga0209258_10011146 607
254 3300025254 Ga0209148_1000099 Ga0209148_1000099167 607
255 3300025272 Ga0209455_1008320 Ga0209455_10083202 607
256 3300037466 Ga0395898_0001228 Ga0395898_0001228_9941_11764 607
257 3300044693 Ga0466961_0006590 Ga0466961_0006590_2511_4340 608
258 3300044693 Ga0466961_0021821 Ga0466961_0021821_2133_3962 609
259 3300044719 Ga0466971_0007964 Ga0466971_0007964_1810_3639 609
260 3300045049 Ga0466959_0004950 Ga0466959_0004950_4416_6245 609
261 3300045836 Ga0466958_0016743 Ga0466958_0016743_1268_3097 609
262 3300061719 Ga0466962_0002744 Ga0466962_0002744_6526_8355 609
263 3300044693 Ga0466961_0020340 Ga0466961_0020340_2261_4093 610
264 3300044719 Ga0466971_0012108 Ga0466971_0012108_1020_2852 610
265 3300045049 Ga0466959_0004515 Ga0466959_0004515_3093_4925 610
266 3300061719 Ga0466962_0002226 Ga0466962_0002226_2201_4033 610
267 3300002705 JGI25156J39149_1002859 JGI25156J39149_10028592 614
268 3300002741 JGI25157J39369_1000478 JGI25157J39369_100047820 614
269 3300037418 Ga0395900_0000012 Ga0395900_0000012_224613_226472 614

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

443

600

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5euh-assembly2.cif.gz_B crystal structure of the c-di-gmp-bound ggdef domain of p. fluorescens gcbc 0.9422 425 584
7a7e-assembly1.cif.gz_A structure of a delta-n mutant - e232start - of pa1120 (tpbb or yfin) from pseudomonas aeruginosa (pao1) comprising only the ggdef domain 0.9419 425 584
6eib-assembly4.cif.gz_D structure of the active ggeef domain of a diguanylate cyclase from vibrio cholerae. 0.9373 433 585
5m3c-assembly1.cif.gz_B structure of the hybrid domain (ggdef-eal) of pa0575 from pseudomonas aeruginosa pao1 at 2.8 ang. with gtp and ca2+ bound to the active site of the ggdef domain 0.9352 425 586
4iob-assembly1.cif.gz_A crystal structure of the ggdef domain of pa1120 (yfin or tpbb) from pseudomonas aeruginosa at 2.7 ang. 0.9347 429 586
ID Description Score Start End Superfamily
af_P77334_235_407_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9427 422 584 3.30.70.270
5euhB00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9422 425 584 3.30.70.270
4iobA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9347 429 586 3.30.70.270
6eibC00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9338 433 585 3.30.70.270
4ursA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.933 425 578 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A3M1DA69-F1-model_v4 GGDEF domain-containing protein 0.9526 453 582 GO:0052621
AF-A0A1Z4PSJ7-F1-model_v4 deleted 0.9466 414 584
AF-A0A534YLU6-F1-model_v4 GGDEF domain-containing protein 0.9466 453 590 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-A0A7V4SPN0-F1-model_v4 Sensor domain-containing diguanylate cyclase 0.9452 414 581 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-A0A4Q6D9T6-F1-model_v4 deleted 0.9437 415 582

Feature Viewer

pLDDT pTM Quality
81.67 0.56 Medium
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Predicted Structure (AlphaFold2)

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