F375880

General Info

Members Datasets Scaffolds Average Seq Length
268 210 536 292

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2862507626|2862514263
Length 336
Sequence NGTTGKPAAESTTGGAGTFPGTLPDTLAAATAAAGKEQAVTGPRALAWRRRRDSAARFWRQYRTHRAGVFGLAALLLFALLALAAPLLVGSDVDNVTDAPGSPMESPSTEFPFGTDQFGRNLLGLVIWGARVSLMVGLLAAVLSVAIGTLIGVTAGHFRGWYATVMMRVTDWFLVMPTLVLAIALATVMSRSLVTIVVAIGVTTWPTTARLVRAQTLAVETRPYIERARALGGGHWHVMSRHVLPNVMPLVLAQTTLIISAAILAEATLAFLGLGDPTVVSWGGLLQDAREAGAVSAGRWWYLVPPGIAIAVVALAFTLCGRAVESVLNPRLGVSR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009986 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
36 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
48 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
49 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
50 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
51 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
52 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
55 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
56 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
57 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
58 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
59 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
60 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
61 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
62 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
63 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
64 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
65 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
66 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
67 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
68 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
69 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
70 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
71 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
72 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
73 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
74 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
77 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
78 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
79 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
80 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
81 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
82 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
83 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
84 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
85 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
86 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
87 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
90 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
91 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
92 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
93 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
94 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
95 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
96 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
97 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
98 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
99 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
100 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
101 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
102 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
103 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
104 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
105 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
106 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
107 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
108 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
116 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
128 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
129 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
130 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
131 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
132 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
133 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
134 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
135 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
136 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
139 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
140 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
141 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
142 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
143 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
144 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
145 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
146 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
147 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
148 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
149 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
150 2558860280 Kutzneria sp. 744 Isolate Unclassified
151 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
152 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
153 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
154 2643221548 Streptomyces sp. Root55 Isolate Unclassified
155 2643221578 Streptomyces sp. Root63 Isolate Unclassified
156 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
157 2643221670 Streptomyces sp. Root431 Isolate Unclassified
158 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
159 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
160 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
161 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
162 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
163 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
164 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
165 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
166 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
167 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
168 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
169 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
170 2808606448 Streptomyces sp. 193411 Isolate Unclassified
171 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
172 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
173 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
174 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
175 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
176 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
177 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
178 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
179 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
180 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
181 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
182 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
183 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
184 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
185 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
186 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
187 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
188 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
189 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
190 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
191 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
192 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
193 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
194 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
195 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
196 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
197 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
198 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
199 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
200 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
201 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
202 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
203 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
204 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
205 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
206 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
207 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
208 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
209 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
210 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.75
Metatranscriptomes 0.75
Isolates 23.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.73
Rhizosphere 78.73
Stem 0
Stem Tuber 0.37
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10002962 3300003203 Bacteria 8010
2 rootH2_10031723 3300003320 Bacteria 1428
3 rootH1_10118898 3300003323 Bacteria 1252
4 JGI25407J50210_10000872 3300003373 Bacteria 6495
5 Ga0006562J51391_1181537 3300003578 Bacteria 1470
6 Ga0070690_100140802 3300005330 Bacteria 1637
7 Ga0068868_100317541 3300005338 Bacteria 1326
8 Ga0070660_100381950 3300005339 Bacteria 1163
9 Ga0070674_100132856 3300005356 Bacteria 1858
10 Ga0070667_100162433 3300005367 Bacteria 1968
11 Ga0070681_10301086 3300005458 Bacteria 1513
12 Ga0070706_100149086 3300005467 Bacteria 2184
13 Ga0070698_100630654 3300005471 Bacteria 1013
14 Ga0070679_100073587 3300005530 Bacteria 3408
15 Ga0070684_100232579 3300005535 Bacteria 1683
16 Ga0068853_100062108 3300005539 Bacteria 3232
17 Ga0068852_100045304 3300005616 Bacteria 3740
18 Ga0068864_100097188 3300005618 Bacteria 2607
19 Ga0068864_100288702 3300005618 Bacteria 1533
20 Ga0068863_100098566 3300005841 Bacteria 2776
21 Ga0081538_10000005 3300005981 Bacteria 187304
22 Ga0081538_10000104 3300005981 Bacteria 83555
23 Ga0081539_10000146 3300005985 Bacteria 164571
24 Ga0075428_100052770 3300006844 Bacteria 4455
25 Ga0075430_100002105 3300006846 Bacteria 16448
26 Ga0075431_100002955 3300006847 Bacteria 16457
27 Ga0075429_100002907 3300006880 Bacteria 14524
28 Ga0075436_100024738 3300006914 Bacteria 4129
29 Ga0105245_10068226 3300009098 Bacteria 3222
30 Ga0114129_10040075 3300009147 Bacteria 6604
31 Ga0105248_10111898 3300009177 Bacteria 3080
32 Ga0105033_101934 3300009986 Bacteria 1710
33 Ga0163162_10020257 3300013306 Bacteria 6531
34 Ga0163162_10034941 3300013306 Bacteria 5005
35 Ga0157375_10051222 3300013308 Bacteria 4053
36 Ga0163163_10011764 3300014325 Bacteria 7952
37 Ga0163163_10023557 3300014325 Bacteria 5845
38 Ga0163163_10149927 3300014325 Bacteria 2376
39 Ga0206353_12038063 3300020082 Bacteria 1666
40 Ga0213875_10002019 3300021388 Bacteria 12520
41 Ga0207647_10011513 3300025904 Bacteria 6202
42 Ga0207684_10010356 3300025910 Bacteria 8206
43 Ga0207657_10343004 3300025919 Bacteria 1179
44 Ga0207669_10164404 3300025937 Bacteria 1572
45 Ga0207711_10350397 3300025941 Bacteria 1367
46 Ga0207661_10334073 3300025944 Bacteria 1365
47 Ga0207661_10642892 3300025944 Bacteria 975
48 Ga0207677_10277920 3300026023 Bacteria 1373
49 Ga0207639_10053318 3300026041 Bacteria 3085
50 Ga0207639_10570029 3300026041 Bacteria 1041
51 Ga0207678_10000091 3300026067 Bacteria 75052
52 Ga0207641_10010421 3300026088 Bacteria 7639
53 Ga0207698_10019179 3300026142 Bacteria 4677
54 Ga0307515_10123014 3300028794 Bacteria 2921
55 Ga0307511_10001458 3300030521 Bacteria 24986
56 Ga0307512_10009389 3300030522 Bacteria 9431
57 Ga0316177_1131982 3300030731 Bacteria 1141
58 Ga0316181_1266870 3300030744 Bacteria 1228
59 Ga0307513_10000049 3300031456 Bacteria 153747
60 Ga0307416_100066596 3300032002 Bacteria 2966
61 Ga0307507_10008222 3300033179 Bacteria 14587
62 Ga0307507_10067879 3300033179 Bacteria 3258
63 Ga0307507_10133873 3300033179 Bacteria 1928
64 Ga0307510_10044465 3300033180 Bacteria 4809
65 Ga0373926_0047537 3300035083 Bacteria 1541
66 Ga0373955_0101867 3300035172 Bacteria 1649
67 Ga0436364_0237542 3300037853 Bacteria 47348
68 Ga0439438_023092 3300041405 Bacteria 1719
69 Ga0439438_045026 3300041405 Bacteria 1136
70 Ga0451837_0254910 3300041494 Bacteria 3146
71 Ga0439449_0033072 3300042007 Bacteria 1927
72 Ga0439449_0074495 3300042007 Bacteria 1251
73 Ga0466972_0015864 3300044658 Bacteria 3766
74 Ga0466961_0009487 3300044693 Bacteria 6197
75 Ga0466971_0026579 3300044719 Bacteria 2588
76 Ga0466960_0021860 3300044901 Bacteria 2853
77 Ga0466960_0022985 3300044901 Bacteria 2794
78 Ga0466959_0003920 3300045049 Bacteria 9882
79 Ga0466959_0046075 3300045049 Bacteria 3209
80 Ga0466958_0056298 3300045836 Bacteria 2388
81 Ga0495627_043580 3300046453 Bacteria 1372
82 Ga0495592_0023128 3300046454 Bacteria 4727
83 Ga0495592_0080220 3300046454 Bacteria 2361
84 Ga0495603_0002766 3300046455 Bacteria 10337
85 Ga0495603_0009271 3300046455 Bacteria 5952
86 Ga0495603_0025021 3300046455 Bacteria 3610
87 Ga0495603_0028497 3300046455 Bacteria 3368
88 Ga0495629_0000534 3300046459 Bacteria 31412
89 Ga0495629_0007383 3300046459 Bacteria 8104
90 Ga0495629_0036483 3300046459 Bacteria 3469
91 Ga0495651_0000689 3300046462 Bacteria 26293
92 Ga0495651_0041233 3300046462 Bacteria 3586
93 Ga0495653_0005906 3300046463 Bacteria 10021
94 Ga0495580_0181937 3300046472 Bacteria 1451
95 Ga0495662_0001527 3300046476 Bacteria 11498
96 Ga0495585_0018220 3300046492 Bacteria 4052
97 Ga0495585_0052981 3300046492 Bacteria 2246
98 Ga0495594_0000594 3300046499 Bacteria 18633
99 Ga0495594_0000942 3300046499 Bacteria 15084
100 Ga0495594_0084869 3300046499 Bacteria 1771
101 Ga0495608_0049427 3300046511 Bacteria 2792
102 Ga0495618_0017641 3300046514 Bacteria 4379
103 Ga0495620_0015267 3300046515 Bacteria 3881
104 Ga0495628_0053731 3300046516 Bacteria 3177
105 Ga0495628_0068320 3300046516 Bacteria 2773
106 Ga0495652_0062965 3300046529 Bacteria 3125
107 Ga0495652_0165093 3300046529 Bacteria 1714
108 Ga0495640_0004706 3300046533 Bacteria 10874
109 Ga0495640_0150325 3300046533 Bacteria 1496
110 Ga0495587_0021601 3300046536 Bacteria 3970
111 Ga0495645_0156339 3300046543 Bacteria 1579
112 Ga0495622_0014591 3300046557 Bacteria 3649
113 Ga0495667_0002871 3300046559 Bacteria 11541
114 Ga0495667_0236668 3300046559 Bacteria 1164
115 Ga0495634_0019900 3300046642 Bacteria 4763
116 Ga0495634_0098148 3300046642 Bacteria 1895
117 Ga0495635_0069654 3300046663 Bacteria 2411
118 Ga0495635_0126674 3300046663 Bacteria 1741
119 Ga0495588_0006835 3300046674 Bacteria 5167
120 Ga0495588_0110926 3300046674 Bacteria 1445
121 Ga0495657_0002534 3300046675 Bacteria 15314
122 Ga0495657_0095278 3300046675 Bacteria 1902
123 Ga0495599_0014066 3300046678 Bacteria 4954
124 Ga0495623_0048005 3300046679 Bacteria 2709
125 Ga0495613_0002087 3300046689 Bacteria 15209
126 Ga0495613_0027217 3300046689 Bacteria 4254
127 Ga0495613_0352427 3300046689 Bacteria 1011
128 Ga0495589_0010994 3300046794 Bacteria 4699
129 Ga0495589_0061115 3300046794 Bacteria 1850
130 Ga0495581_0038981 3300047315 Bacteria 2751
131 Ga0495604_0018361 3300047317 Bacteria 5601
132 Ga0495636_0002926 3300047318 Bacteria 6606
133 Ga0495636_0009106 3300047318 Bacteria 3904
134 Ga0495674_0089488 3300047319 Bacteria 2631
135 Ga0495672_0067225 3300047320 Bacteria 2042
136 Ga0495676_0001711 3300047321 Bacteria 19146
137 Ga0495676_0003058 3300047321 Bacteria 15133
138 Ga0495676_0007021 3300047321 Bacteria 10335
139 Ga0495680_0022670 3300047322 Bacteria 5231
140 Ga0495680_0093880 3300047322 Bacteria 2245
141 Ga0495683_0023165 3300047323 Bacteria 3193
142 Ga0495687_005117 3300047443 Bacteria 8493
143 Ga0495685_006389 3300047447 Bacteria 3855
144 Ga0495684_0048970 3300047471 Bacteria 3230
145 Ga0495593_0075805 3300047673 Bacteria 1743
146 Ga0495593_0102616 3300047673 Bacteria 1466
147 Ga0495614_0004107 3300048089 Bacteria 6551
148 Ga0496102_0111965 3300048905 Bacteria 2545
149 Ga0496105_0072766 3300048908 Bacteria 2840
150 Ga0496106_0461866 3300048909 Bacteria 1020
151 Ga0496108_0206777 3300048911 Bacteria 1703
152 Ga0496109_0061381 3300048912 Bacteria 3436
153 Ga0496109_0358775 3300048912 Bacteria 1377
154 Ga0496109_0550986 3300048912 Bacteria 1088
155 Ga0496112_0022955 3300048915 Bacteria 5953
156 Ga0496112_0798345 3300048915 Bacteria 869
157 Ga0496115_0186984 3300048918 Bacteria 1712
158 Ga0501033_0002638 3300049570 Bacteria 15088
159 Ga0501033_0310962 3300049570 Bacteria 1108
160 Ga0501036_0006107 3300049572 Bacteria 9777
161 Ga0501036_0016785 3300049572 Bacteria 6116
162 Ga0501036_0155257 3300049572 Bacteria 1930
163 Ga0501037_0012594 3300049573 Bacteria 6232
164 Ga0501037_0088511 3300049573 Bacteria 2241
165 Ga0501038_0026483 3300049574 Bacteria 5164
166 Ga0501038_0059824 3300049574 Bacteria 3262
167 Ga0501039_0110430 3300049575 Bacteria 2149
168 Ga0501039_0168622 3300049575 Bacteria 1721
169 Ga0501039_0170400 3300049575 Bacteria 1712
170 Ga0501040_0148970 3300049576 Bacteria 1650
171 Ga0501041_0012271 3300049577 Bacteria 5076
172 Ga0501042_0046409 3300049578 Bacteria 3097
173 Ga0501042_0068257 3300049578 Bacteria 2542
174 Ga0501043_0004174 3300049579 Bacteria 11809
175 Ga0501047_0000116 3300049581 Bacteria 96774
176 Ga0501047_0025563 3300049581 Bacteria 5677
177 Ga0501048_0067567 3300049582 Bacteria 2526
178 Ga0501070_0007414 3300049586 Bacteria 9317
179 Ga0501071_0004707 3300049587 Bacteria 8672
180 Ga0501071_0020367 3300049587 Bacteria 4608
181 Ga0501072_0087774 3300049588 Bacteria 2468
182 Ga0501074_0011742 3300049590 Bacteria 6366
183 Ga0501074_0038879 3300049590 Bacteria 3446
184 Ga0501075_0063402 3300049591 Bacteria 2786
185 Ga0501075_0105813 3300049591 Bacteria 2138
186 Ga0501076_0012455 3300049592 Bacteria 6359
187 Ga0501079_0169178 3300049741 Bacteria 1704
188 Ga0501080_0040021 3300049742 Bacteria 4374
189 Ga0501081_0029687 3300049743 Bacteria 3697
190 Ga0501035_0005885 3300049822 Bacteria 11551
191 Ga0501044_0196689 3300049823 Bacteria 1976
192 Ga0501044_0247764 3300049823 Bacteria 1724
193 Ga0501044_0286712 3300049823 Bacteria 1579
194 Ga0501045_0030924 3300049824 Bacteria 3876
195 Ga0501045_0138951 3300049824 Bacteria 1807
196 nmdc:mga05p37_19626_c1 3300050507 Bacteria 8175
197 nmdc:mga09592_1717_c1 3300050508 Bacteria 17644
198 nmdc:mga0qj67_35776_c1 3300050509 Bacteria 3884
199 nmdc:mga06r32_280988_c1 3300050510 Bacteria 1652
200 nmdc:mga08x19_249383_c1 3300050514 Bacteria 1225
201 Ga0495655_0042411 3300053083 Bacteria 1168
202 Ga0495595_0045445 3300053084 Bacteria 2020
203 Ga0495619_0146435 3300053085 Bacteria 1628
204 Ga0466962_0018059 3300061719 Bacteria 3393
205 Ga0466962_0128914 3300061719 Bacteria 1222
206 2862514263 2862507626 Bacteria 9425308
207 2515853010 2515154155 Bacteria 7985436
208 2559422586 2558860280 Bacteria 11429938
209 2585302116 2582581312 Bacteria 7308206
210 2616700125 2616644814 Bacteria 11555299
211 2616906160 2616644941 Bacteria 8510691
212 2643762753 2643221548 Bacteria 8053412
213 2643899303 2643221578 Bacteria 9213798
214 2643943738 2643221587 Bacteria 7586415
215 2644387220 2643221670 Bacteria 6497041
216 2644406962 2643221673 Bacteria 9196637
217 2644434003 2643221677 Bacteria 7584031
218 2644459392 2643221682 Bacteria 6743283
219 2645721679 2643221961 Bacteria 3919167
220 2645724363 2643221962 Bacteria 3874254
221 2676489717 2675903060 Bacteria 10051191
222 2776376735 2775506925 Bacteria 7237746
223 2784590706 2784132148 Bacteria 8627943
224 2791914730 2791354901 Bacteria 8322202
225 2795793135 2795385472 Bacteria 6627535
226 2804848243 2802429296 Bacteria 7227771
227 2808913318 2808606375 Bacteria 9466072
228 2809234398 2808606448 Bacteria 8656184
229 2812355607 2811994879 Bacteria 9313447
230 2812478449 2811994917 Bacteria 7761064
231 2816423880 2816332119 Bacteria 8120218
232 2816507960 2816332139 Bacteria 9138787
233 2819698881 2818991463 Bacteria 7948711
234 2827631397 2827628540 Bacteria 6858585
235 2837272991 2837268691 Bacteria 7850704
236 2852639796 2852635781 Bacteria 8251373
237 2862183502 2862178590 Bacteria 8583590
238 2862294768 2862290372 Bacteria 7471434
239 2863068139 2863067949 Bacteria 8541735
240 2866556757 2866552031 Bacteria 5824618
241 2866614935 2866612099 Bacteria 7543886
242 2868091176 2868088558 Bacteria 7609351
243 2870723795 2870721527 Bacteria 9689237
244 2873153756 2873151551 Bacteria 8625867
245 2875397053 2875391855 Bacteria 7600475
246 2884694559 2884693830 Bacteria 11273186
247 2887481706 2887478801 Bacteria 8972725
248 2895433035 2895427314 Bacteria 13147766
249 2895444464 2895442618 Bacteria 11027144
250 2899366623 2899359706 Bacteria 10940472
251 2899372066 2899370129 Bacteria 6781179
252 2912763111 2912757875 Bacteria 7940295
253 2915769716 2915768154 Bacteria 8424322
254 2918506847 2918501144 Bacteria 8668083
255 2946047500 2946045630 Bacteria 8527308
256 2946070183 2946064051 Bacteria 8957905
257 2947226612 2947224130 Bacteria 9938529
258 2954005175 2954002825 Bacteria 9173742
259 2966600540 2966598605 Bacteria 7676064
260 2995464285 2995463766 Bacteria 8577691
261 3006397692 3006393351 Bacteria 6615579
262 8003319998 8003314358 Bacteria 10575343
263 8023630572 8023623736 Bacteria 8593882
264 8025414279 8025413630 Bacteria 7014048
265 8025536392 8025530807 Bacteria 8495698
266 8047714980 8047710418 Bacteria 11023148
267 8056062310 8056060235 Bacteria 7259403
268 8056208704 8056207758 Bacteria 8639239
269 JGI25406J46586_10002962
270 rootH2_10031723
271 rootH1_10118898
272 JGI25407J50210_10000872
273 Ga0006562J51391_1181537
274 Ga0070690_100140802
275 Ga0068868_100317541
276 Ga0070660_100381950
277 Ga0070674_100132856
278 Ga0070667_100162433
279 Ga0070681_10301086
280 Ga0070706_100149086
281 Ga0070698_100630654
282 Ga0070679_100073587
283 Ga0070684_100232579
284 Ga0068853_100062108
285 Ga0068852_100045304
286 Ga0068864_100097188
287 Ga0068864_100288702
288 Ga0068863_100098566
289 Ga0081538_10000005
290 Ga0081538_10000104
291 Ga0081539_10000146
292 Ga0075428_100052770
293 Ga0075430_100002105
294 Ga0075431_100002955
295 Ga0075429_100002907
296 Ga0075436_100024738
297 Ga0105245_10068226
298 Ga0114129_10040075
299 Ga0105248_10111898
300 Ga0105033_101934
301 Ga0163162_10020257
302 Ga0163162_10034941
303 Ga0157375_10051222
304 Ga0163163_10011764
305 Ga0163163_10023557
306 Ga0163163_10149927
307 Ga0206353_12038063
308 Ga0213875_10002019
309 Ga0207647_10011513
310 Ga0207684_10010356
311 Ga0207657_10343004
312 Ga0207669_10164404
313 Ga0207711_10350397
314 Ga0207661_10334073
315 Ga0207661_10642892
316 Ga0207677_10277920
317 Ga0207639_10053318
318 Ga0207639_10570029
319 Ga0207678_10000091
320 Ga0207641_10010421
321 Ga0207698_10019179
322 Ga0307515_10123014
323 Ga0307511_10001458
324 Ga0307512_10009389
325 Ga0316177_1131982
326 Ga0316181_1266870
327 Ga0307513_10000049
328 Ga0307416_100066596
329 Ga0307507_10008222
330 Ga0307507_10067879
331 Ga0307507_10133873
332 Ga0307510_10044465
333 Ga0373926_0047537
334 Ga0373955_0101867
335 Ga0436364_0237542
336 Ga0439438_023092
337 Ga0439438_045026
338 Ga0451837_0254910
339 Ga0439449_0033072
340 Ga0439449_0074495
341 Ga0466972_0015864
342 Ga0466961_0009487
343 Ga0466971_0026579
344 Ga0466960_0021860
345 Ga0466960_0022985
346 Ga0466959_0003920
347 Ga0466959_0046075
348 Ga0466958_0056298
349 Ga0495627_043580
350 Ga0495592_0023128
351 Ga0495592_0080220
352 Ga0495603_0002766
353 Ga0495603_0009271
354 Ga0495603_0025021
355 Ga0495603_0028497
356 Ga0495629_0000534
357 Ga0495629_0007383
358 Ga0495629_0036483
359 Ga0495651_0000689
360 Ga0495651_0041233
361 Ga0495653_0005906
362 Ga0495580_0181937
363 Ga0495662_0001527
364 Ga0495585_0018220
365 Ga0495585_0052981
366 Ga0495594_0000594
367 Ga0495594_0000942
368 Ga0495594_0084869
369 Ga0495608_0049427
370 Ga0495618_0017641
371 Ga0495620_0015267
372 Ga0495628_0053731
373 Ga0495628_0068320
374 Ga0495652_0062965
375 Ga0495652_0165093
376 Ga0495640_0004706
377 Ga0495640_0150325
378 Ga0495587_0021601
379 Ga0495645_0156339
380 Ga0495622_0014591
381 Ga0495667_0002871
382 Ga0495667_0236668
383 Ga0495634_0019900
384 Ga0495634_0098148
385 Ga0495635_0069654
386 Ga0495635_0126674
387 Ga0495588_0006835
388 Ga0495588_0110926
389 Ga0495657_0002534
390 Ga0495657_0095278
391 Ga0495599_0014066
392 Ga0495623_0048005
393 Ga0495613_0002087
394 Ga0495613_0027217
395 Ga0495613_0352427
396 Ga0495589_0010994
397 Ga0495589_0061115
398 Ga0495581_0038981
399 Ga0495604_0018361
400 Ga0495636_0002926
401 Ga0495636_0009106
402 Ga0495674_0089488
403 Ga0495672_0067225
404 Ga0495676_0001711
405 Ga0495676_0003058
406 Ga0495676_0007021
407 Ga0495680_0022670
408 Ga0495680_0093880
409 Ga0495683_0023165
410 Ga0495687_005117
411 Ga0495685_006389
412 Ga0495684_0048970
413 Ga0495593_0075805
414 Ga0495593_0102616
415 Ga0495614_0004107
416 Ga0496102_0111965
417 Ga0496105_0072766
418 Ga0496106_0461866
419 Ga0496108_0206777
420 Ga0496109_0061381
421 Ga0496109_0358775
422 Ga0496109_0550986
423 Ga0496112_0022955
424 Ga0496112_0798345
425 Ga0496115_0186984
426 Ga0501033_0002638
427 Ga0501033_0310962
428 Ga0501036_0006107
429 Ga0501036_0016785
430 Ga0501036_0155257
431 Ga0501037_0012594
432 Ga0501037_0088511
433 Ga0501038_0026483
434 Ga0501038_0059824
435 Ga0501039_0110430
436 Ga0501039_0168622
437 Ga0501039_0170400
438 Ga0501040_0148970
439 Ga0501041_0012271
440 Ga0501042_0046409
441 Ga0501042_0068257
442 Ga0501043_0004174
443 Ga0501047_0000116
444 Ga0501047_0025563
445 Ga0501048_0067567
446 Ga0501070_0007414
447 Ga0501071_0004707
448 Ga0501071_0020367
449 Ga0501072_0087774
450 Ga0501074_0011742
451 Ga0501074_0038879
452 Ga0501075_0063402
453 Ga0501075_0105813
454 Ga0501076_0012455
455 Ga0501079_0169178
456 Ga0501080_0040021
457 Ga0501081_0029687
458 Ga0501035_0005885
459 Ga0501044_0196689
460 Ga0501044_0247764
461 Ga0501044_0286712
462 Ga0501045_0030924
463 Ga0501045_0138951
464 nmdc:mga05p37_19626_c1
465 nmdc:mga09592_1717_c1
466 nmdc:mga0qj67_35776_c1
467 nmdc:mga06r32_280988_c1
468 nmdc:mga08x19_249383_c1
469 Ga0495655_0042411
470 Ga0495595_0045445
471 Ga0495619_0146435
472 Ga0466962_0018059
473 Ga0466962_0128914
474 2862514263
475 2515853010
476 2559422586
477 2585302116
478 2616700125
479 2616906160
480 2643762753
481 2643899303
482 2643943738
483 2644387220
484 2644406962
485 2644434003
486 2644459392
487 2645721679
488 2645724363
489 2676489717
490 2776376735
491 2784590706
492 2791914730
493 2795793135
494 2804848243
495 2808913318
496 2809234398
497 2812355607
498 2812478449
499 2816423880
500 2816507960
501 2819698881
502 2827631397
503 2837272991
504 2852639796
505 2862183502
506 2862294768
507 2863068139
508 2866556757
509 2866614935
510 2868091176
511 2870723795
512 2873153756
513 2875397053
514 2884694559
515 2887481706
516 2895433035
517 2895444464
518 2899366623
519 2899372066
520 2912763111
521 2915769716
522 2918506847
523 2946047500
524 2946070183
525 2947226612
526 2954005175
527 2966600540
528 2995464285
529 3006397692
530 8003319998
531 8023630572
532 8025414279
533 8025536392
534 8047714980
535 8056062310
536 8056208704

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

148

334

0.9

PF12911

OppC_N

N-terminal TM domain of oligopeptide transport permease C

55

104

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tuz-assembly2.cif.gz_F inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form 0.7765 84 291
3tuz-assembly2.cif.gz_F inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form 0.7479 84 291
3tui-assembly2.cif.gz_E inward facing conformations of the metni methionine abc transporter: cy5 native crystal form 0.7322 85 291
3rlf-assembly1.cif.gz_F crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to mgamppnp 0.7298 84 278
3tui-assembly2.cif.gz_E inward facing conformations of the metni methionine abc transporter: cy5 native crystal form 0.7025 85 291
ID Description Score Start End Superfamily
af_P0AEG1_88_295_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9709 82 293 1.10.3720.10
af_P75799_92_298_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9706 84 293 1.10.3720.10
af_P0AEG1_88_295_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9663 82 293 1.10.3720.10
af_P77463_85_288_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9654 85 289 1.10.3720.10
af_P75799_92_298_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9614 84 293 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A388SXP9-F1-model_v4 ABC transporter permease 0.991 33 297 GO:0005886
GO:0055085
AF-A0A5N8VYI0-F1-model_v4 ABC transporter permease 0.9898 2 297 GO:0005886
GO:0055085
AF-A0A1G7W7N9-F1-model_v4 Peptide/nickel transport system permease protein 0.9888 28 295 GO:0005886
GO:0055085
AF-A0A5N8XG71-F1-model_v4 ABC transporter permease 0.9879 2 296 GO:0005886
GO:0055085
AF-A0A7Y2SGP0-F1-model_v4 deleted 0.9879 2 296

Map