F375307

General Info

Members Datasets Scaffolds Average Seq Length
268 190 536 416

Family's Representative Sequence

Representative Sequence 3300005355|Ga0070671_100061756|Ga0070671_1000617562
Length 437
Sequence LPPLPIGMQRKNREPSGMNRRRLLQIAAASAGAALVRPALAQGAAGRVVVIGGGFAGATCAGVVKTLDPRIDIILVEPHAMYTACPFSNGVIAVLRELRDQEFGYDNFARRGITVARQSATGVNPQAKSVTLAGGDRLSYDRLVVAPGIDFRWNALPGYDEAAVERMPHAWKAGAQTLLLRRQLEAMDDGGLVVIAVPANPYRCPPGPYERASLIAWYLKTKKPKSKLIVLDAKDTFSKQRLFQQGWQTLYPGLLEWVSLSAGGKVTEVDSNAMTVTTDFETYRPALANIIPPQKAGGIAELAGVADQTGWSPIDPMTFESTLQPNIHVIGDAAIAEAMPKSAFAANAQAKVCAAAMAALLAGAAPPTPKLINTCYSLVAPDYGISVAGVYRPAGGKLVDVEGAGGVSSLDAPPAIRAAEANIADGWFRTITTEVFG

Samples

Sample ID Description Type Environment
1 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
2 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
23 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
78 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
79 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
83 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
84 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
85 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
86 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
87 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
93 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
94 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
95 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
96 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
97 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
98 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
99 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
100 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
101 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
102 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
103 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
104 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
105 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
106 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
107 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
108 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
109 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
110 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
111 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
112 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
113 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
114 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
115 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
116 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
117 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
118 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
119 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
120 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
123 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
124 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
125 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
126 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
127 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
128 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
129 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
130 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
131 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
132 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
133 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
141 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
142 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
143 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
144 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
145 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
146 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
147 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
150 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
151 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
152 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
153 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
154 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
155 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
156 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
157 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
158 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
159 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
160 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
161 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
162 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
163 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
164 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
165 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
166 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
167 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
168 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
169 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
170 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
171 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
172 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
173 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
174 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
175 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
176 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
177 2513237101 Bradyrhizobium murdochi WSM1741 Isolate Nodule
178 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
179 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
180 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
181 2874604998 Bradyrhizobium sp. LMTR 3 Isolate Nodule
182 2876808645 Bradyrhizobium algeriense RST89 Isolate Unclassified
183 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
184 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
185 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
186 641522639 Methylobacterium sp. 4-46 Isolate Nodule
187 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
188 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
189 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule
190 8056673599 Bradyrhizobium hereditatis WSM 1738 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.78
Metatranscriptomes 0
Isolates 5.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.7
Nodule 2.99
Rhizoplane 1.49
Rhizosphere 78.73
Stem 0
Stem Tuber 0
Unclassified 1.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070671_100061756 3300005355 Bacteria 3121
2 JGI24742J22300_10009967 3300002244 Bacteria 1570
3 JGI25404J52841_10000288 3300003659 Bacteria 6507
4 Ga0070676_10062530 3300005328 Bacteria 2215
5 Ga0070690_100039569 3300005330 Bacteria 2978
6 Ga0068869_100029055 3300005334 Bacteria 3869
7 Ga0070680_100139813 3300005336 Bacteria 2030
8 Ga0070668_100027260 3300005347 Bacteria 4337
9 Ga0070669_100004697 3300005353 Bacteria 9855
10 Ga0070674_100046227 3300005356 Bacteria 2977
11 Ga0070673_100194411 3300005364 Bacteria 1744
12 Ga0070705_100023002 3300005440 Bacteria 3339
13 Ga0070700_100137840 3300005441 Bacteria 1654
14 Ga0070708_100083142 3300005445 Bacteria 2901
15 Ga0070662_100056074 3300005457 Bacteria 2860
16 Ga0070662_100110394 3300005457 Bacteria 2094
17 Ga0068867_100009231 3300005459 Bacteria 6961
18 Ga0070707_100096828 3300005468 Bacteria 2858
19 Ga0070698_100094448 3300005471 Bacteria 2969
20 Ga0070698_100150663 3300005471 Bacteria 2274
21 Ga0070699_100106689 3300005518 Bacteria 2457
22 Ga0070679_100020114 3300005530 Bacteria 6505
23 Ga0070697_100223368 3300005536 Bacteria 1605
24 Ga0070686_100107358 3300005544 Bacteria 1896
25 Ga0070695_100139979 3300005545 Bacteria 1677
26 Ga0070665_100102304 3300005548 Bacteria 2868
27 Ga0070702_100068958 3300005615 Bacteria 2082
28 Ga0068859_100056517 3300005617 Bacteria 3950
29 Ga0068864_100317944 3300005618 Bacteria 1461
30 Ga0068863_100239649 3300005841 Bacteria 1751
31 Ga0068860_100025523 3300005843 Bacteria 5701
32 Ga0068860_100068353 3300005843 Bacteria 3375
33 Ga0068860_100152253 3300005843 Bacteria 2227
34 Ga0068862_100034594 3300005844 Bacteria 4276
35 Ga0068862_100036767 3300005844 Bacteria 4150
36 Ga0068862_100053723 3300005844 Bacteria 3449
37 Ga0068862_100131799 3300005844 Bacteria 2211
38 Ga0081455_10002982 3300005937 Bacteria 19755
39 Ga0081455_10030485 3300005937 Bacteria 4897
40 Ga0081455_10045444 3300005937 Bacteria 3821
41 Ga0081455_10098015 3300005937 Bacteria 2361
42 Ga0081455_10147847 3300005937 Bacteria 1815
43 Ga0081540_1003851 3300005983 Bacteria 11718
44 Ga0081540_1014330 3300005983 Bacteria 5086
45 Ga0081540_1039687 3300005983 Bacteria 2465
46 Ga0081540_1065797 3300005983 Bacteria 1702
47 Ga0081539_10000180 3300005985 Bacteria 148269
48 Ga0075365_10018590 3300006038 Bacteria 4275
49 Ga0075365_10024652 3300006038 Bacteria 3798
50 Ga0075369_10012874 3300006186 Bacteria 3309
51 Ga0075428_100001776 3300006844 Bacteria 23025
52 Ga0075428_100028376 3300006844 Bacteria 6191
53 Ga0075428_100030120 3300006844 Bacteria 6002
54 Ga0075431_100002664 3300006847 Bacteria 17292
55 Ga0075431_100056458 3300006847 Bacteria 4050
56 Ga0075433_10043141 3300006852 Bacteria 3915
57 Ga0075433_10283165 3300006852 Bacteria 1468
58 Ga0075434_100122530 3300006871 Bacteria 2616
59 Ga0075429_100078175 3300006880 Bacteria 2883
60 Ga0075436_100036593 3300006914 Bacteria 3388
61 Ga0097620_100056516 3300006931 Bacteria 3950
62 Ga0111539_10004747 3300009094 Bacteria 17744
63 Ga0111539_10006184 3300009094 Bacteria 15445
64 Ga0111539_10008515 3300009094 Bacteria 13033
65 Ga0111539_10010769 3300009094 Bacteria 11512
66 Ga0111539_10367302 3300009094 Bacteria 1675
67 Ga0105245_10215090 3300009098 Bacteria 1852
68 Ga0114129_10002963 3300009147 Bacteria 23761
69 Ga0114129_10037688 3300009147 Bacteria 6824
70 Ga0114129_10073085 3300009147 Bacteria 4778
71 Ga0114129_10100131 3300009147 Bacteria 4010
72 Ga0114129_10106466 3300009147 Bacteria 3874
73 Ga0114129_10196495 3300009147 Bacteria 2735
74 Ga0105243_10038028 3300009148 Bacteria 3746
75 Ga0105248_10258581 3300009177 Bacteria 1960
76 Ga0105249_10035557 3300009553 Bacteria 4518
77 Ga0105249_10074396 3300009553 Bacteria 3144
78 Ga0105239_10113021 3300010375 Bacteria 3011
79 Ga0105239_10582314 3300010375 Bacteria 1276
80 Ga0157378_10056442 3300013297 Bacteria 3499
81 Ga0157378_10135379 3300013297 Bacteria 2284
82 Ga0157375_10108399 3300013308 Bacteria 2872
83 Ga0228598_1003083 3300024227 Bacteria 3613
84 Ga0228598_1005900 3300024227 Bacteria 2545
85 Ga0209758_1002526 3300025297 Bacteria 18502
86 Ga0207684_10014305 3300025910 Bacteria 6845
87 Ga0207684_10138148 3300025910 Bacteria 2094
88 Ga0207684_10184043 3300025910 Bacteria 1802
89 Ga0207646_10116985 3300025922 Bacteria 2394
90 Ga0207700_10117355 3300025928 Bacteria 2152
91 Ga0207690_10014466 3300025932 Bacteria 4767
92 Ga0207706_10061836 3300025933 Bacteria 3298
93 Ga0207706_10130520 3300025933 Bacteria 2210
94 Ga0207709_10172725 3300025935 Bacteria 1518
95 Ga0207669_10030587 3300025937 Bacteria 2993
96 Ga0207669_10143756 3300025937 Bacteria 1660
97 Ga0207665_10166023 3300025939 Bacteria 1591
98 Ga0207691_10020088 3300025940 Bacteria 6318
99 Ga0207711_10203111 3300025941 Bacteria 1809
100 Ga0207712_10033952 3300025961 Bacteria 3453
101 Ga0207658_10046897 3300025986 Bacteria 3159
102 Ga0207677_10058807 3300026023 Bacteria 2649
103 Ga0207678_10049851 3300026067 Bacteria 3618
104 Ga0207678_10138830 3300026067 Bacteria 2074
105 Ga0207708_10095190 3300026075 Bacteria 2300
106 Ga0207648_10032340 3300026089 Bacteria 4619
107 Ga0207676_10169473 3300026095 Bacteria 1901
108 Ga0207674_10247548 3300026116 Bacteria 1729
109 Ga0207675_100071143 3300026118 Bacteria 3252
110 Ga0207428_10000288 3300027907 Bacteria 67876
111 Ga0207428_10082984 3300027907 Bacteria 2500
112 Ga0268266_10043720 3300028379 Bacteria 3829
113 Ga0268266_10210266 3300028379 Bacteria 1784
114 Ga0268265_10054843 3300028380 Bacteria 3026
115 Ga0268265_10064802 3300028380 Bacteria 2816
116 Ga0268265_10244477 3300028380 Bacteria 1585
117 Ga0268264_10066270 3300028381 Bacteria 3045
118 Ga0268264_10252134 3300028381 Bacteria 1640
119 Ga0265325_10043568 3300031241 Bacteria 2341
120 Ga0265331_10036686 3300031250 Bacteria 2405
121 Ga0307516_10107272 3300031730 Bacteria 2602
122 Ga0307409_100244884 3300031995 Bacteria 1635
123 Ga0307411_10013472 3300032005 Bacteria 4513
124 Ga0307411_10132491 3300032005 Bacteria 1824
125 Ga0307510_10006305 3300033180 Bacteria 14151
126 Ga0373955_0143470 3300035172 Bacteria 1402
127 Ga0373935_0110976 3300035692 Bacteria 1820
128 Ga0373927_0115841 3300035695 Bacteria 1747
129 Ga0373947_0256153 3300035725 Unclassified 1158
130 Ga0373937_0004754 3300036401 Bacteria 11552
131 Ga0373937_0092525 3300036401 Bacteria 2803
132 Ga0373925_0199221 3300037068 Unclassified 1592
133 Ga0395905_0096735 3300037471 Bacteria 2772
134 Ga0395901_0088394 3300038443 Bacteria 3241
135 Ga0436365_1782987 3300039437 Bacteria 1966
136 Ga0436363_1603992 3300039450 Bacteria 1809
137 Ga0451576_0002188 3300045051 Bacteria 30183
138 Ga0495603_0002778 3300046455 Bacteria 10319
139 Ga0495603_0040136 3300046455 Bacteria 2802
140 Ga0495641_0029184 3300046461 Bacteria 2659
141 Ga0495653_0170744 3300046463 Unclassified 1501
142 Ga0495580_0002475 3300046472 Bacteria 16114
143 Ga0495585_0038793 3300046492 Bacteria 2680
144 Ga0495594_0027115 3300046499 Bacteria 3086
145 Ga0495594_0119342 3300046499 Bacteria 1490
146 Ga0495608_0075881 3300046511 Bacteria 2191
147 Ga0495616_0059071 3300046513 Bacteria 1887
148 Ga0495620_0070890 3300046515 Bacteria 1427
149 Ga0495628_0084616 3300046516 Bacteria 2461
150 Ga0495628_0176673 3300046516 Bacteria 1617
151 Ga0495644_0070294 3300046523 Bacteria 1315
152 Ga0495648_0023584 3300046524 Bacteria 4209
153 Ga0495652_0023016 3300046529 Bacteria 5526
154 Ga0495652_0083870 3300046529 Bacteria 2622
155 Ga0495640_0007124 3300046533 Bacteria 8801
156 Ga0495640_0114306 3300046533 Bacteria 1760
157 Ga0495586_0052433 3300046535 Bacteria 2209
158 Ga0495598_0045934 3300046537 Bacteria 1296
159 Ga0495622_0016349 3300046557 Bacteria 3454
160 Ga0495667_0105952 3300046559 Bacteria 1817
161 Ga0495656_0057814 3300046615 Bacteria 1680
162 Ga0495634_0062259 3300046642 Bacteria 2478
163 Ga0495635_0015268 3300046663 Bacteria 5373
164 Ga0495635_0113722 3300046663 Bacteria 1848
165 Ga0495588_0041387 3300046674 Bacteria 2352
166 Ga0495599_0021343 3300046678 Bacteria 4039
167 Ga0495623_0006268 3300046679 Bacteria 7733
168 Ga0495669_0001990 3300046684 Bacteria 8393
169 Ga0495604_0010497 3300047317 Bacteria 7342
170 Ga0495604_0106619 3300047317 Bacteria 2049
171 Ga0495604_0204584 3300047317 Unclassified 1367
172 Ga0495674_0135984 3300047319 Bacteria 2068
173 Ga0495674_0216149 3300047319 Bacteria 1586
174 Ga0495680_0107845 3300047322 Bacteria 2068
175 Ga0496100_0057335 3300048903 Bacteria 2551
176 Ga0496102_0132699 3300048905 Bacteria 2332
177 Ga0496102_0222338 3300048905 Bacteria 1780
178 Ga0496110_0112731 3300048913 Bacteria 2445
179 Ga0496118_0033891 3300048921 Bacteria 4179
180 Ga0496118_0069009 3300048921 Bacteria 2563
181 Ga0496119_0001286 3300048922 Bacteria 31059
182 Ga0496121_0022241 3300048924 Bacteria 6166
183 Ga0496122_0003797 3300048925 Bacteria 19441
184 Ga0496122_0018275 3300048925 Bacteria 6489
185 Ga0496123_0008256 3300048926 Bacteria 9601
186 Ga0496125_0004827 3300048928 Bacteria 15320
187 Ga0496126_0167936 3300048929 Bacteria 1871
188 Ga0495682_0054568 3300049460 Bacteria 1450
189 Ga0501033_0089638 3300049570 Bacteria 2250
190 Ga0501039_0150112 3300049575 Bacteria 1831
191 Ga0501040_0002193 3300049576 Bacteria 12584
192 Ga0501042_0077252 3300049578 Bacteria 2384
193 Ga0501043_0214401 3300049579 Bacteria 1492
194 Ga0501046_0125872 3300049580 Bacteria 1947
195 Ga0501048_0148988 3300049582 Bacteria 1655
196 Ga0501067_0007038 3300049583 Bacteria 6248
197 Ga0501069_0037745 3300049585 Bacteria 2666
198 Ga0501072_0138257 3300049588 Bacteria 1942
199 Ga0501075_0028674 3300049591 Bacteria 4110
200 Ga0501075_0053786 3300049591 Bacteria 3028
201 Ga0501076_0055705 3300049592 Bacteria 3136
202 Ga0501081_0007636 3300049743 Bacteria 7015
203 nmdc:mga00v17_4146_c1 3300050491 Bacteria 7505
204 nmdc:mga0yw44_5233_c1 3300050492 Bacteria 6085
205 nmdc:mga05p37_233856_c1 3300050507 Bacteria 2213
206 nmdc:mga05p37_24531_c1 3300050507 Bacteria 7331
207 nmdc:mga05p37_24544_c1 3300050507 Bacteria 7328
208 nmdc:mga05p37_29685_c1 3300050507 Bacteria 6672
209 nmdc:mga05p37_40049_c1 3300050507 Bacteria 5754
210 nmdc:mga05p37_517_c1 3300050507 Bacteria 42690
211 nmdc:mga05p37_5801_c1 3300050507 Bacteria 14514
212 nmdc:mga05p37_6051_c1 3300050507 Bacteria 14242
213 nmdc:mga05p37_66268_c1 3300050507 Bacteria 4442
214 nmdc:mga06r32_316454_c1 3300050510 Bacteria 1546
215 nmdc:mga06r32_85142_c1 3300050510 Bacteria 3082
216 nmdc:mga08y16_12280_c1 3300050511 Bacteria 9004
217 nmdc:mga08y16_189822_c1 3300050511 Bacteria 2132
218 nmdc:mga08y16_2033_c1 3300050511 Bacteria 20720
219 nmdc:mga0n895_144636_c1 3300050512 Bacteria 2407
220 nmdc:mga0n895_67283_c1 3300050512 Bacteria 3548
221 nmdc:mga0rr50_64489_c1 3300050513 Bacteria 2771
222 nmdc:mga0rr50_78499_c1 3300050513 Bacteria 2541
223 nmdc:mga0a205_112950_c1 3300050515 Bacteria 2616
224 nmdc:mga0a205_164428_c1 3300050515 Bacteria 2115
225 nmdc:mga0a205_49050_c1 3300050515 Bacteria 4074
226 Ga0495601_0005208 3300053077 Bacteria 7562
227 Ga0495601_0060978 3300053077 Bacteria 2394
228 Ga0495601_0127094 3300053077 Bacteria 1658
229 Ga0495612_0004352 3300053078 Bacteria 5876
230 Ga0495595_0009899 3300053084 Bacteria 3952
231 Ga0495619_0001789 3300053085 Bacteria 14292
232 Ga0495619_0119682 3300053085 Bacteria 1805
233 Ga0500643_034731 3300053087 Bacteria 1517
234 Ga0500646_0010891 3300053090 Bacteria 2335
235 Ga0500651_0037709 3300053093 Bacteria 3046
236 Ga0500566_0001917 3300053094 Bacteria 12244
237 Ga0500641_0007243 3300053096 Bacteria 3954
238 Ga0500650_0000747 3300053098 Bacteria 8809
239 Ga0500554_016313 3300053102 Bacteria 1961
240 Ga0500556_0000003 3300053104 Bacteria 679379
241 Ga0500556_0000073 3300053104 Bacteria 99145
242 Ga0500592_005562 3300053116 Bacteria 2006
243 Ga0500642_0000006 3300053130 Bacteria 350064
244 Ga0500642_0106194 3300053130 Bacteria 1309
245 Ga0500652_002025 3300053131 Bacteria 6100
246 Ga0500559_0000308 3300053136 Bacteria 37080
247 Ga0500568_0000856 3300053139 Bacteria 21406
248 Ga0500577_0000070 3300053142 Bacteria 23258
249 Ga0500616_0000033 3300053153 Bacteria 398830
250 Ga0500616_0051766 3300053153 Bacteria 2162
251 Ga0500622_0003132 3300053156 Bacteria 11352
252 Ga0500636_0005812 3300053177 Bacteria 7062
253 Ga0501084_0023516 3300054114 Bacteria 5141
254 Ga0501082_0016215 3300060353 Bacteria 6414
255 2513693724 2513237101 Bacteria 7952346
256 2545678383 2545555834 Bacteria 8130841
257 2842339062 2842333319 Bacteria 8899485
258 2857525126 2857524615 Bacteria 6615449
259 2874611588 2874604998 Bacteria 7834745
260 2876813626 2876808645 Bacteria 8824342
261 2889037811 2889033259 Bacteria 9099371
262 2893069709 2893066018 Bacteria 6158120
263 2919079014 2919073203 Bacteria 6531949
264 641643240 641522639 Bacteria 7737025
265 8006966872 8006964411 Bacteria 8966052
266 8006984620 8006984368 Bacteria 9651211
267 8006994620 8006994254 Bacteria 8309700
268 8056680913 8056673599 Bacteria 7871253
269 Ga0070671_100061756
270 JGI24742J22300_10009967
271 JGI25404J52841_10000288
272 Ga0070676_10062530
273 Ga0070690_100039569
274 Ga0068869_100029055
275 Ga0070680_100139813
276 Ga0070668_100027260
277 Ga0070669_100004697
278 Ga0070674_100046227
279 Ga0070673_100194411
280 Ga0070705_100023002
281 Ga0070700_100137840
282 Ga0070708_100083142
283 Ga0070662_100056074
284 Ga0070662_100110394
285 Ga0068867_100009231
286 Ga0070707_100096828
287 Ga0070698_100094448
288 Ga0070698_100150663
289 Ga0070699_100106689
290 Ga0070679_100020114
291 Ga0070697_100223368
292 Ga0070686_100107358
293 Ga0070695_100139979
294 Ga0070665_100102304
295 Ga0070702_100068958
296 Ga0068859_100056517
297 Ga0068864_100317944
298 Ga0068863_100239649
299 Ga0068860_100025523
300 Ga0068860_100068353
301 Ga0068860_100152253
302 Ga0068862_100034594
303 Ga0068862_100036767
304 Ga0068862_100053723
305 Ga0068862_100131799
306 Ga0081455_10002982
307 Ga0081455_10030485
308 Ga0081455_10045444
309 Ga0081455_10098015
310 Ga0081455_10147847
311 Ga0081540_1003851
312 Ga0081540_1014330
313 Ga0081540_1039687
314 Ga0081540_1065797
315 Ga0081539_10000180
316 Ga0075365_10018590
317 Ga0075365_10024652
318 Ga0075369_10012874
319 Ga0075428_100001776
320 Ga0075428_100028376
321 Ga0075428_100030120
322 Ga0075431_100002664
323 Ga0075431_100056458
324 Ga0075433_10043141
325 Ga0075433_10283165
326 Ga0075434_100122530
327 Ga0075429_100078175
328 Ga0075436_100036593
329 Ga0097620_100056516
330 Ga0111539_10004747
331 Ga0111539_10006184
332 Ga0111539_10008515
333 Ga0111539_10010769
334 Ga0111539_10367302
335 Ga0105245_10215090
336 Ga0114129_10002963
337 Ga0114129_10037688
338 Ga0114129_10073085
339 Ga0114129_10100131
340 Ga0114129_10106466
341 Ga0114129_10196495
342 Ga0105243_10038028
343 Ga0105248_10258581
344 Ga0105249_10035557
345 Ga0105249_10074396
346 Ga0105239_10113021
347 Ga0105239_10582314
348 Ga0157378_10056442
349 Ga0157378_10135379
350 Ga0157375_10108399
351 Ga0228598_1003083
352 Ga0228598_1005900
353 Ga0209758_1002526
354 Ga0207684_10014305
355 Ga0207684_10138148
356 Ga0207684_10184043
357 Ga0207646_10116985
358 Ga0207700_10117355
359 Ga0207690_10014466
360 Ga0207706_10061836
361 Ga0207706_10130520
362 Ga0207709_10172725
363 Ga0207669_10030587
364 Ga0207669_10143756
365 Ga0207665_10166023
366 Ga0207691_10020088
367 Ga0207711_10203111
368 Ga0207712_10033952
369 Ga0207658_10046897
370 Ga0207677_10058807
371 Ga0207678_10049851
372 Ga0207678_10138830
373 Ga0207708_10095190
374 Ga0207648_10032340
375 Ga0207676_10169473
376 Ga0207674_10247548
377 Ga0207675_100071143
378 Ga0207428_10000288
379 Ga0207428_10082984
380 Ga0268266_10043720
381 Ga0268266_10210266
382 Ga0268265_10054843
383 Ga0268265_10064802
384 Ga0268265_10244477
385 Ga0268264_10066270
386 Ga0268264_10252134
387 Ga0265325_10043568
388 Ga0265331_10036686
389 Ga0307516_10107272
390 Ga0307409_100244884
391 Ga0307411_10013472
392 Ga0307411_10132491
393 Ga0307510_10006305
394 Ga0373955_0143470
395 Ga0373935_0110976
396 Ga0373927_0115841
397 Ga0373947_0256153
398 Ga0373937_0004754
399 Ga0373937_0092525
400 Ga0373925_0199221
401 Ga0395905_0096735
402 Ga0395901_0088394
403 Ga0436365_1782987
404 Ga0436363_1603992
405 Ga0451576_0002188
406 Ga0495603_0002778
407 Ga0495603_0040136
408 Ga0495641_0029184
409 Ga0495653_0170744
410 Ga0495580_0002475
411 Ga0495585_0038793
412 Ga0495594_0027115
413 Ga0495594_0119342
414 Ga0495608_0075881
415 Ga0495616_0059071
416 Ga0495620_0070890
417 Ga0495628_0084616
418 Ga0495628_0176673
419 Ga0495644_0070294
420 Ga0495648_0023584
421 Ga0495652_0023016
422 Ga0495652_0083870
423 Ga0495640_0007124
424 Ga0495640_0114306
425 Ga0495586_0052433
426 Ga0495598_0045934
427 Ga0495622_0016349
428 Ga0495667_0105952
429 Ga0495656_0057814
430 Ga0495634_0062259
431 Ga0495635_0015268
432 Ga0495635_0113722
433 Ga0495588_0041387
434 Ga0495599_0021343
435 Ga0495623_0006268
436 Ga0495669_0001990
437 Ga0495604_0010497
438 Ga0495604_0106619
439 Ga0495604_0204584
440 Ga0495674_0135984
441 Ga0495674_0216149
442 Ga0495680_0107845
443 Ga0496100_0057335
444 Ga0496102_0132699
445 Ga0496102_0222338
446 Ga0496110_0112731
447 Ga0496118_0033891
448 Ga0496118_0069009
449 Ga0496119_0001286
450 Ga0496121_0022241
451 Ga0496122_0003797
452 Ga0496122_0018275
453 Ga0496123_0008256
454 Ga0496125_0004827
455 Ga0496126_0167936
456 Ga0495682_0054568
457 Ga0501033_0089638
458 Ga0501039_0150112
459 Ga0501040_0002193
460 Ga0501042_0077252
461 Ga0501043_0214401
462 Ga0501046_0125872
463 Ga0501048_0148988
464 Ga0501067_0007038
465 Ga0501069_0037745
466 Ga0501072_0138257
467 Ga0501075_0028674
468 Ga0501075_0053786
469 Ga0501076_0055705
470 Ga0501081_0007636
471 nmdc:mga00v17_4146_c1
472 nmdc:mga0yw44_5233_c1
473 nmdc:mga05p37_233856_c1
474 nmdc:mga05p37_24531_c1
475 nmdc:mga05p37_24544_c1
476 nmdc:mga05p37_29685_c1
477 nmdc:mga05p37_40049_c1
478 nmdc:mga05p37_517_c1
479 nmdc:mga05p37_5801_c1
480 nmdc:mga05p37_6051_c1
481 nmdc:mga05p37_66268_c1
482 nmdc:mga06r32_316454_c1
483 nmdc:mga06r32_85142_c1
484 nmdc:mga08y16_12280_c1
485 nmdc:mga08y16_189822_c1
486 nmdc:mga08y16_2033_c1
487 nmdc:mga0n895_144636_c1
488 nmdc:mga0n895_67283_c1
489 nmdc:mga0rr50_64489_c1
490 nmdc:mga0rr50_78499_c1
491 nmdc:mga0a205_112950_c1
492 nmdc:mga0a205_164428_c1
493 nmdc:mga0a205_49050_c1
494 Ga0495601_0005208
495 Ga0495601_0060978
496 Ga0495601_0127094
497 Ga0495612_0004352
498 Ga0495595_0009899
499 Ga0495619_0001789
500 Ga0495619_0119682
501 Ga0500643_034731
502 Ga0500646_0010891
503 Ga0500651_0037709
504 Ga0500566_0001917
505 Ga0500641_0007243
506 Ga0500650_0000747
507 Ga0500554_016313
508 Ga0500556_0000003
509 Ga0500556_0000073
510 Ga0500592_005562
511 Ga0500642_0000006
512 Ga0500642_0106194
513 Ga0500652_002025
514 Ga0500559_0000308
515 Ga0500568_0000856
516 Ga0500577_0000070
517 Ga0500616_0000033
518 Ga0500616_0051766
519 Ga0500622_0003132
520 Ga0500636_0005812
521 Ga0501084_0023516
522 Ga0501082_0016215
523 2513693724
524 2545678383
525 2842339062
526 2857525126
527 2874611588
528 2876813626
529 2889037811
530 2893069709
531 2919079014
532 641643240
533 8006966872
534 8006984620
535 8006994620
536 8056680913

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09242

FCSD-flav_bind

Flavocytochrome c sulphide dehydrogenase, flavin-binding

367

436

0.98

PF21706

FCSD_central

Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain, central

177

292

0.97

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

46

183

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5n1t-assembly1.cif.gz_A crystal structure of complex between flavocytochrome c and copper chaperone copc from t. paradoxus 0.9842 23 415
5n1t-assembly1.cif.gz_A crystal structure of complex between flavocytochrome c and copper chaperone copc from t. paradoxus 0.9817 23 415
1fcd-assembly2.cif.gz_B the structure of flavocytochrome c sulfide dehydrogenase from a purple phototrophic bacterium chromatium vinosum at 2.5 angstroms resolution 0.9703 23 415
3vrd-assembly1.cif.gz_B crystal structure of flavocytochrome c from thermochromatium tepidum 0.9697 23 415
3vrd-assembly1.cif.gz_B crystal structure of flavocytochrome c from thermochromatium tepidum 0.9553 23 415
ID Description Score Start End Superfamily
3vrdB01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9845 23 342 3.50.50.60
5n1tA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.982 138 271 3.50.50.60
5n1tA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9748 138 271 3.50.50.60
3vrdB01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9742 23 342 3.50.50.60
5n1tA03 Alpha Beta;Alpha-Beta Complex;Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3;Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.9418 344 415 3.90.760.10
ID Description Score Start End GO Terms
AF-A4U2J3-F1-model_v4 Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain 0.9859 90 415 GO:0016491
GO:0050660
AF-A0A5C7T8X0-F1-model_v4 Cytochrome C 0.9845 74 415 GO:0016491
GO:0050660
AF-A0A258UWS7-F1-model_v4 deleted 0.9802 262 415
AF-A0A1E4JM38-F1-model_v4 Flavocytochrome c sulphide dehydrogenase flavin-binding domain-containing protein 0.9791 278 415 GO:0016491
GO:0050660
AF-A0A345J164-F1-model_v4 deleted 0.9777 21 415

Map