F373959

General Info

Members Datasets Scaffolds Average Seq Length
266 191 198 503

Family's Representative Sequence

Representative Sequence 3300005842|Ga0068858_100005146|Ga0068858_10000514610
Length 518
Sequence MTDKIASARRRGIGTTMTATAPEGFEPEPTPEAVAEQKQVRLDKRDSLIASGAQAYPVSVPITTTIPAVRAKYGELVADDTTGDIVGVAGRVVFFRNTGKLCFATLQSGDGERIQAMVSLAEVGEESLERWKEFVDLGDHVFVNGEVISSRRGELSILVKDWQIAAKAILPLPNLYTELSDETRVRQRYLDLITREQARITVRARAAAVASLRATFASHDYLEVETPMLQTIHGGASARPFATHSNAFDTELFLRIAPELFLKRAVVGGIERVFEINRNFRNEGADSTHSPEFAMLEAYQAYGDYEQMADLTQQLIQDAAMAVSGSHTVTWADGTEYDLGGQWDRLSMYGSLSEASGVSVTPESTVAELKKLADANGLEVALATHGKYVEELWEHFVKKDLVRPTFVMDFPVDTSPLVRDHRSIAGVVEKWDLYIRGFELATGYSELVDPVIQRERFVEQAAQAARGDDEAMRLDEEFLRALEHGMPPTGGMGMGIDRLLMAITGLGIRETILFPLVK

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221553 Microbacterium sp. Root553 Isolate Unclassified
5 2643221566 Microbacterium sp. Root166 Isolate Unclassified
6 2643221572 Leifsonia sp. Root60 Isolate Unclassified
7 2643221575 Microbacterium sp. Root61 Isolate Unclassified
8 2643221597 Microbacterium sp. Root180 Isolate Unclassified
9 2643221630 Microbacterium sp. Root322 Isolate Unclassified
10 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
11 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
12 2643221649 Leifsonia sp. Root4 Isolate Unclassified
13 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
14 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
15 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
16 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
17 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
18 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
19 2773857759 Microbacterium sp. 1294 Isolate Unclassified
20 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
21 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
22 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
23 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
24 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
25 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
26 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
27 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
28 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
29 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
30 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
31 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
32 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
33 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
34 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
35 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
36 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
37 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
38 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
39 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
40 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
41 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
42 2919069694 Microbacterium sp. 1154 Isolate Unclassified
43 2919395869 Microbacterium resistens 2980 Isolate Unclassified
44 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
45 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
46 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
47 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
48 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
49 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
50 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
51 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
52 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
53 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
54 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
55 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
56 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
57 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
58 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
59 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
60 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
61 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
62 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
63 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
64 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
65 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
66 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
67 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
68 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
69 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
70 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
71 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
72 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
73 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
74 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
75 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
76 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
77 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
78 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
79 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
80 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
81 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
82 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
83 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
84 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
85 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
86 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
87 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
88 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
89 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
90 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
91 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
95 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
115 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
116 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
117 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
118 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
119 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
120 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
121 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
122 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
123 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
124 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
125 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
126 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
127 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
128 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
129 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
130 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
131 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
132 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
133 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
134 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
135 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
136 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
137 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
138 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
139 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
140 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
141 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
142 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
143 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
144 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
147 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
148 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
149 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
150 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
151 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
162 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
163 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
164 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
165 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
166 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
167 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
169 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
170 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
171 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
172 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
173 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
174 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
175 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
176 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
177 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
178 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
179 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
180 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
181 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
182 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
183 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
184 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
185 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
186 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
187 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
188 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
189 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
190 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
191 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.06
Metatranscriptomes 0.38
Isolates 25.56

Biome Distribution

Category Percentage (%)
Aerial Root 0.75
Bulb 0
Endosphere 16.17
Nodule 0
Rhizoplane 3.38
Rhizosphere 43.98
Stem 0
Stem Tuber 0
Unclassified 35.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001535 3300002738 Bacteria 8020
2 Ga0006562J51391_1146641 3300003578 Bacteria 6290
3 Ga0055539_1000019 3300003752 Bacteria 341727
4 Ga0055533_1000023 3300003756 Bacteria 341727
5 Ga0055525_1000125 3300003759 Bacteria 115822
6 Ga0055541_1006493 3300003841 Bacteria 1978
7 Ga0070658_10000392 3300005327 Bacteria 38060
8 Ga0068868_100014181 3300005338 Bacteria 5868
9 Ga0070659_100028390 3300005366 Bacteria 4320
10 Ga0070659_100153480 3300005366 Bacteria 1880
11 Ga0070667_100093376 3300005367 Bacteria 2591
12 Ga0070672_100016086 3300005543 Bacteria 5350
13 Ga0068855_100003178 3300005563 Bacteria 20111
14 Ga0068855_100022489 3300005563 Bacteria 7555
15 Ga0068855_100075143 3300005563 Bacteria 3924
16 Ga0068858_100005146 3300005842 Bacteria 12814
17 Ga0075365_10002752 3300006038 Bacteria 8778
18 Ga0075365_10005703 3300006038 Bacteria 6751
19 Ga0075365_10019030 3300006038 Bacteria 4231
20 Ga0075363_100006583 3300006048 Bacteria 5291
21 Ga0075364_10033139 3300006051 Bacteria 3323
22 Ga0075367_10000845 3300006178 Bacteria 12182
23 Ga0105244_10020833 3300009036 Bacteria 3634
24 Ga0105243_10001512 3300009148 Bacteria 20307
25 Ga0105241_10190904 3300009174 Bacteria 1705
26 Ga0105248_10005514 3300009177 Bacteria 13895
27 Ga0105248_10057404 3300009177 Bacteria 4369
28 Ga0105237_10138760 3300009545 Bacteria 2426
29 Ga0157371_10046364 3300013102 Bacteria 3091
30 Ga0157369_10007938 3300013105 Bacteria 12205
31 Ga0157374_10063560 3300013296 Bacteria 3462
32 Ga0163162_10126457 3300013306 Bacteria 2663
33 Ga0157372_10195704 3300013307 Bacteria 2342
34 Ga0157380_10235410 3300014326 Bacteria 1647
35 Ga0157379_10011998 3300014968 Bacteria 7570
36 Ga0209566_100031 3300025225 Bacteria 341555
37 Ga0209674_100001 3300025226 Bacteria 4013750
38 Ga0209563_100001 3300025230 Bacteria 4013775
39 Ga0209563_100609 3300025230 Bacteria 11639
40 Ga0209646_1000041 3300025246 Bacteria 346024
41 Ga0209677_100001 3300025253 Bacteria 4013787
42 Ga0209148_1003347 3300025254 Bacteria 4503
43 Ga0209455_1003210 3300025272 Bacteria 5911
44 Ga0207655_1002108 3300025728 Bacteria 16634
45 Ga0207655_1024536 3300025728 Bacteria 2952
46 Ga0207647_10007091 3300025904 Bacteria 8129
47 Ga0207705_10000001 3300025909 Bacteria 2061880
48 Ga0207654_10000001 3300025911 Bacteria 1816198
49 Ga0207695_10007866 3300025913 Bacteria 13459
50 Ga0207695_10014110 3300025913 Bacteria 9486
51 Ga0207694_10000127 3300025924 Bacteria 79064
52 Ga0207687_10017317 3300025927 Bacteria 4742
53 Ga0207690_10001773 3300025932 Bacteria 13270
54 Ga0207709_10002516 3300025935 Bacteria 11433
55 Ga0207691_10047196 3300025940 Bacteria 3954
56 Ga0207711_10000546 3300025941 Bacteria 38381
57 Ga0207711_10033147 3300025941 Bacteria 4369
58 Ga0207667_10003203 3300025949 Bacteria 20230
59 Ga0207667_10008830 3300025949 Bacteria 11929
60 Ga0207667_10077946 3300025949 Bacteria 3435
61 Ga0207658_10125339 3300025986 Bacteria 2054
62 Ga0207677_10036545 3300026023 Bacteria 3203
63 Ga0207703_10000607 3300026035 Bacteria 36369
64 Ga0207639_10050590 3300026041 Bacteria 3156
65 Ga0307515_10038228 3300028794 Bacteria 7685
66 Ga0307405_10032893 3300031731 Bacteria 3070
67 Ga0307518_10040384 3300031838 Bacteria 3394
68 Ga0307406_10000016 3300031901 Bacteria 106175
69 Ga0307406_10001063 3300031901 Bacteria 15283
70 Ga0307412_10012600 3300031911 Bacteria 4934
71 Ga0307414_10028360 3300032004 Bacteria 3631
72 Ga0307414_10131224 3300032004 Bacteria 1945
73 Ga0316574_0058177 3300035398 Bacteria 2421
74 Ga0395901_0077135 3300038443 Bacteria 3478
75 Ga0466972_0021625 3300044658 Bacteria 3206
76 Ga0466965_0000003 3300044683 Bacteria 265985
77 Ga0466966_0080177 3300044684 Bacteria 2034
78 Ga0466963_0137117 3300044694 Bacteria 1694
79 Ga0466970_0000135 3300044765 Bacteria 33904
80 Ga0466970_0020164 3300044765 Bacteria 3461
81 Ga0466957_0030078 3300044842 Bacteria 3242
82 Ga0466959_0007690 3300045049 Bacteria 7577
83 Ga0495627_000238 3300046453 Bacteria 57919
84 Ga0495590_0000639 3300046457 Bacteria 16222
85 Ga0495650_0002011 3300046471 Bacteria 17838
86 Ga0496101_0019441 3300048904 Bacteria 4636
87 Ga0496105_0044943 3300048908 Bacteria 3643
88 Ga0496107_0013751 3300048910 Bacteria 5660
89 Ga0496109_0004774 3300048912 Bacteria 11320
90 Ga0496112_0059043 3300048915 Bacteria 3779
91 Ga0496113_0014519 3300048916 Bacteria 5376
92 Ga0496114_0104867 3300048917 Bacteria 2418
93 Ga0496115_0123614 3300048918 Bacteria 2130
94 Ga0496115_0126722 3300048918 Bacteria 2103
95 Ga0496116_0042423 3300048919 Bacteria 3110
96 Ga0496117_0000070 3300048920 Bacteria 245027
97 Ga0496117_0000178 3300048920 Bacteria 131062
98 Ga0496117_0000196 3300048920 Bacteria 119243
99 Ga0496117_0005093 3300048920 Bacteria 14054
100 Ga0496117_0011452 3300048920 Bacteria 7946
101 Ga0496117_0032596 3300048920 Bacteria 3955
102 Ga0496117_0107829 3300048920 Bacteria 1743
103 Ga0496118_0006045 3300048921 Bacteria 13483
104 Ga0496118_0012992 3300048921 Bacteria 7928
105 Ga0496119_0000888 3300048922 Bacteria 39161
106 Ga0496119_0004818 3300048922 Bacteria 13232
107 Ga0496119_0007300 3300048922 Bacteria 9999
108 Ga0496119_0010210 3300048922 Bacteria 7924
109 Ga0496119_0011045 3300048922 Bacteria 7530
110 Ga0496119_0031081 3300048922 Bacteria 3588
111 Ga0496119_0041187 3300048922 Bacteria 2945
112 Ga0496120_0000356 3300048923 Bacteria 75147
113 Ga0496120_0000462 3300048923 Bacteria 64059
114 Ga0496120_0002073 3300048923 Bacteria 21551
115 Ga0496120_0013290 3300048923 Bacteria 5552
116 Ga0496120_0022021 3300048923 Bacteria 4014
117 Ga0496120_0040482 3300048923 Bacteria 2738
118 Ga0496120_0057346 3300048923 Bacteria 2192
119 Ga0496121_0000046 3300048924 Bacteria 335942
120 Ga0496121_0018194 3300048924 Bacteria 7102
121 Ga0496122_0000105 3300048925 Bacteria 194509
122 Ga0496122_0000553 3300048925 Bacteria 77088
123 Ga0496122_0004299 3300048925 Bacteria 17852
124 Ga0496122_0014043 3300048925 Bacteria 7777
125 Ga0496122_0039571 3300048925 Bacteria 3758
126 Ga0496123_0000075 3300048926 Bacteria 194499
127 Ga0496123_0004911 3300048926 Bacteria 13723
128 Ga0496123_0019523 3300048926 Bacteria 5340
129 Ga0496123_0045193 3300048926 Bacteria 3003
130 Ga0496124_0007313 3300048927 Bacteria 11774
131 Ga0496124_0028271 3300048927 Bacteria 5019
132 Ga0496125_0000550 3300048928 Bacteria 64700
133 Ga0496125_0001667 3300048928 Bacteria 31185
134 Ga0496125_0012337 3300048928 Bacteria 8490
135 Ga0496125_0014913 3300048928 Bacteria 7547
136 Ga0496125_0029737 3300048928 Bacteria 4903
137 Ga0496126_0001551 3300048929 Bacteria 35294
138 Ga0496126_0019411 3300048929 Bacteria 6695
139 Ga0496126_0027873 3300048929 Bacteria 5388
140 Ga0496126_0041223 3300048929 Bacteria 4274
141 Ga0496126_0055779 3300048929 Bacteria 3573
142 Ga0496126_0059187 3300048929 Bacteria 3450
143 Ga0496126_0068582 3300048929 Bacteria 3166
144 Ga0496126_0168521 3300048929 Bacteria 1868
145 Ga0501031_0053238 3300049568 Bacteria 2637
146 Ga0501033_0026993 3300049570 Bacteria 4319
147 Ga0501034_0001530 3300049571 Bacteria 30359
148 Ga0501034_0010949 3300049571 Bacteria 9423
149 Ga0501034_0022565 3300049571 Bacteria 6412
150 Ga0501034_0097745 3300049571 Bacteria 2932
151 Ga0501036_0205979 3300049572 Bacteria 1654
152 Ga0501037_0011456 3300049573 Bacteria 6527
153 Ga0501037_0026190 3300049573 Bacteria 4310
154 Ga0501038_0024082 3300049574 Bacteria 5433
155 Ga0501039_0010895 3300049575 Bacteria 6929
156 Ga0501043_0035308 3300049579 Bacteria 3932
157 Ga0501046_0009697 3300049580 Bacteria 8306
158 Ga0501047_0005747 3300049581 Bacteria 11675
159 Ga0501047_0014026 3300049581 Bacteria 7615
160 Ga0501068_0042127 3300049584 Bacteria 2746
161 Ga0501068_0113972 3300049584 Bacteria 1683
162 Ga0501070_0004545 3300049586 Bacteria 11909
163 Ga0501070_0041529 3300049586 Bacteria 3832
164 Ga0501071_0000226 3300049587 Bacteria 25850
165 Ga0501072_0058467 3300049588 Bacteria 3039
166 Ga0501073_0000216 3300049589 Bacteria 37584
167 Ga0501073_0013187 3300049589 Bacteria 6024
168 Ga0501073_0040395 3300049589 Bacteria 3302
169 Ga0501080_0000040 3300049742 Bacteria 81733
170 Ga0501035_0002344 3300049822 Bacteria 18653
171 Ga0501035_0030938 3300049822 Bacteria 4875
172 Ga0501044_0004140 3300049823 Bacteria 16284
173 nmdc:mga03n38_22756_c1 3300050490 Bacteria 2541
174 nmdc:mga00v17_21557_c1 3300050491 Bacteria 3705
175 nmdc:mga00v17_45640_c1 3300050491 Bacteria 2648
176 nmdc:mga0yw44_3374_c1 3300050492 Bacteria 7085
177 nmdc:mga0yw44_66766_c1 3300050492 Bacteria 2221
178 nmdc:mga06z11_1302_c1 3300050494 Bacteria 9228
179 Ga0500635_0000002 3300053080 Bacteria 265613
180 Ga0500643_000347 3300053087 Bacteria 36823
181 Ga0500651_0000494 3300053093 Bacteria 20428
182 Ga0500650_0031946 3300053098 Bacteria 2396
183 Ga0500556_0000008 3300053104 Bacteria 304943
184 Ga0500556_0000145 3300053104 Bacteria 59342
185 Ga0500593_003485 3300053117 Bacteria 5956
186 Ga0500559_0000129 3300053136 Bacteria 58778
187 Ga0500559_0000303 3300053136 Bacteria 37519
188 Ga0500559_0000898 3300053136 Bacteria 18988
189 Ga0500559_0039389 3300053136 Bacteria 2055
190 Ga0500568_0000003 3300053139 Bacteria 863587
191 Ga0500568_0000107 3300053139 Bacteria 77492
192 Ga0500568_0000148 3300053139 Bacteria 60967
193 Ga0500568_0011294 3300053139 Bacteria 4155
194 Ga0500588_0003169 3300053146 Bacteria 3442
195 Ga0500590_000220 3300053148 Bacteria 17230
196 Ga0500616_0000126 3300053153 Bacteria 134967
197 Ga0500616_0003451 3300053153 Bacteria 12059
198 Ga0500620_000064 3300053155 Bacteria 20142

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053155 Ga0500620_000064 Ga0500620_000064_11516_13063 464
2 3300006038 Ga0075365_10005703 Ga0075365_100057034 467
3 3300006051 Ga0075364_10033139 Ga0075364_100331393 467
4 3300050491 nmdc:mga00v17_21557_c1 nmdc:mga00v17_21557_c1_1616_3166 467
5 3300046457 Ga0495590_0000639 Ga0495590_0000639_8365_9864 475
6 3300048922 Ga0496119_0004818 Ga0496119_0004818_2735_4243 482
7 3300048923 Ga0496120_0013290 Ga0496120_0013290_657_2165 482
8 3300053146 Ga0500588_0003169 Ga0500588_0003169_176_1666 483
9 3300009177 Ga0105248_10005514 Ga0105248_100055148 485
10 3300013296 Ga0157374_10063560 Ga0157374_100635605 485
11 3300025941 Ga0207711_10000546 Ga0207711_100005466 485
12 3300053104 Ga0500556_0000008 Ga0500556_0000008_69086_70576 485
13 3300053139 Ga0500568_0000003 Ga0500568_0000003_246748_248238 485
14 3300053139 Ga0500568_0000107 Ga0500568_0000107_71905_73416 486
15 3300031731 Ga0307405_10032893 Ga0307405_100328932 488
16 3300049588 Ga0501072_0058467 Ga0501072_0058467_885_2369 489
17 3300049589 Ga0501073_0040395 Ga0501073_0040395_1692_3176 489
18 3300053148 Ga0500590_000220 Ga0500590_000220_4847_6382 489
19 3300044684 Ga0466966_0080177 Ga0466966_0080177_167_1648 490
20 3300044694 Ga0466963_0137117 Ga0466963_0137117_176_1681 490
21 3300044765 Ga0466970_0020164 Ga0466970_0020164_1125_2606 490
22 3300049571 Ga0501034_0022565 Ga0501034_0022565_1297_2784 490
23 3300049572 Ga0501036_0205979 Ga0501036_0205979_15_1499 490
24 3300049573 Ga0501037_0026190 Ga0501037_0026190_2650_4137 490
25 3300049579 Ga0501043_0035308 Ga0501043_0035308_346_1833 490
26 3300049581 Ga0501047_0014026 Ga0501047_0014026_4552_6039 490
27 3300049586 Ga0501070_0004545 Ga0501070_0004545_6827_8314 490
28 3300049589 Ga0501073_0013187 Ga0501073_0013187_1291_2778 490
29 3300049742 Ga0501080_0000040 Ga0501080_0000040_25788_27275 490
30 3300053153 Ga0500616_0003451 Ga0500616_0003451_3814_5346 490
31 3300013105 Ga0157369_10007938 Ga0157369_100079383 491
32 3300038443 Ga0395901_0077135 Ga0395901_0077135_311_1822 491
33 3300005327 Ga0070658_10000392 Ga0070658_1000039234 492
34 3300025909 Ga0207705_10000001 Ga0207705_10000001774 492
35 3300048923 Ga0496120_0057346 Ga0496120_0057346_219_1760 492
36 3300005563 Ga0068855_100075143 Ga0068855_1000751432 493
37 3300009174 Ga0105241_10190904 Ga0105241_101909041 493
38 3300014968 Ga0157379_10011998 Ga0157379_100119986 493
39 3300025254 Ga0209148_1003347 Ga0209148_10033476 493
40 3300025911 Ga0207654_10000001 Ga0207654_10000001303 493
41 3300025913 Ga0207695_10007866 Ga0207695_1000786611 493
42 3300025924 Ga0207694_10000127 Ga0207694_1000012723 493
43 3300025949 Ga0207667_10003203 Ga0207667_1000320313 493
44 3300031838 Ga0307518_10040384 Ga0307518_100403845 493
45 iso_pu_bacteria 2852677369 2852678450 493
46 iso_pu_bacteria 2643221635 2644197393 494
47 iso_pu_bacteria 2857729791 2857733388 494
48 iso_pu_bacteria 2928121344 2928121593 494
49 iso_pu_bacteria 8057345674 8057347294 494
50 3300053139 Ga0500568_0011294 Ga0500568_0011294_382_1878 495
51 iso_pu_bacteria 2844852863 2844854226 495
52 iso_pu_bacteria 2857733635 2857734695 495
53 iso_pu_bacteria 2857737099 2857738854 495
54 3300005366 Ga0070659_100153480 Ga0070659_1001534801 496
55 3300044765 Ga0466970_0000135 Ga0466970_0000135_24257_25810 496
56 3300053136 Ga0500559_0000898 Ga0500559_0000898_3193_4695 496
57 iso_pu_bacteria 2833709550 2833713254 496
58 3300005563 Ga0068855_100003178 Ga0068855_10000317818 497
59 3300025949 Ga0207667_10008830 Ga0207667_100088308 497
60 3300028794 Ga0307515_10038228 Ga0307515_100382289 497
61 3300048924 Ga0496121_0018194 Ga0496121_0018194_2565_4067 497
62 3300049587 Ga0501071_0000226 Ga0501071_0000226_2519_4018 497
63 3300053098 Ga0500650_0031946 Ga0500650_0031946_525_2027 497
64 3300053153 Ga0500616_0000126 Ga0500616_0000126_94254_95771 497
65 iso_pu_bacteria 2643221572 2643876546 497
66 iso_pu_bacteria 2643221632 2644182232 497
67 iso_pu_bacteria 2643221669 2644383601 497
68 iso_pu_bacteria 2808606368 2808884606 497
69 iso_pu_bacteria 2811994872 2812325396 497
70 iso_pu_bacteria 2857720070 2857721913 497
71 iso_pu_bacteria 2895660088 2895660753 497
72 iso_pu_bacteria 2919523602 2919525630 497
73 iso_pu_bacteria 2928090899 2928093151 497
74 iso_pu_bacteria 2966921586 2966923511 497
75 iso_pu_bacteria 2984580707 2984583234 497
76 iso_pu_bacteria 8056037122 8056039467 497
77 3300035398 Ga0316574_0058177 Ga0316574_0058177_856_2370 498
78 3300053136 Ga0500559_0000129 Ga0500559_0000129_28185_29684 498
79 iso_pu_bacteria 2643221546 2643752124 498
80 iso_pu_bacteria 2643221649 2644278004 498
81 iso_pu_bacteria 2773857759 2774382704 498
82 iso_pu_bacteria 2808606306 2808629695 498
83 iso_pu_bacteria 2870628048 2870628270 498
84 iso_pu_bacteria 2897561785 2897564125 498
85 iso_pu_bacteria 2977251589 2977252891 498
86 3300006038 Ga0075365_10019030 Ga0075365_100190302 499
87 3300044683 Ga0466965_0000003 Ga0466965_0000003_254724_256235 499
88 3300046471 Ga0495650_0002011 Ga0495650_0002011_6528_8042 499
89 3300048924 Ga0496121_0000046 Ga0496121_0000046_12534_14042 499
90 3300048925 Ga0496122_0000553 Ga0496122_0000553_56936_58438 499
91 3300048926 Ga0496123_0004911 Ga0496123_0004911_2353_3855 499
92 3300049570 Ga0501033_0026993 Ga0501033_0026993_2600_4108 499
93 3300049571 Ga0501034_0001530 Ga0501034_0001530_8228_9820 499
94 3300049571 Ga0501034_0097745 Ga0501034_0097745_567_2099 499
95 3300049589 Ga0501073_0000216 Ga0501073_0000216_16711_18210 499
96 3300049822 Ga0501035_0002344 Ga0501035_0002344_10388_11896 499
97 3300049823 Ga0501044_0004140 Ga0501044_0004140_7595_9103 499
98 3300050492 nmdc:mga0yw44_66766_c1 nmdc:mga0yw44_66766_c1_78_1577 499
99 3300053087 Ga0500643_000347 Ga0500643_000347_31323_32828 499
100 3300053104 Ga0500556_0000145 Ga0500556_0000145_2560_4059 499
101 3300053117 Ga0500593_003485 Ga0500593_003485_1772_3271 499
102 3300053136 Ga0500559_0000303 Ga0500559_0000303_23294_24793 499
103 3300053139 Ga0500568_0000148 Ga0500568_0000148_41140_42642 499
104 iso_pu_bacteria 2585428157 2588107780 499
105 iso_pu_bacteria 2757320536 2758225001 499
106 iso_pu_bacteria 2773857758 2774379032 499
107 iso_pu_bacteria 2904509784 2904510496 499
108 iso_pu_bacteria 2908678064 2908678286 499
109 iso_pu_bacteria 2919069694 2919070611 499
110 iso_pu_bacteria 2966924647 2966926176 499
111 iso_pu_bacteria 2974294766 2974294990 499
112 iso_pu_bacteria 2974324384 2974325208 499
113 iso_pu_bacteria 2977228692 2977230164 499
114 iso_pu_bacteria 2977236895 2977238983 499
115 iso_pu_bacteria 2977264416 2977265370 499
116 iso_pu_bacteria 2984542743 2984543231 499
117 iso_pu_bacteria 8016254467 8016255336 499
118 iso_pu_bacteria 8046352972 8046353901 499
119 3300048917 Ga0496114_0104867 Ga0496114_0104867_70_1605 500
120 3300048925 Ga0496122_0014043 Ga0496122_0014043_5315_6853 500
121 3300048928 Ga0496125_0001667 Ga0496125_0001667_27746_29284 500
122 3300048929 Ga0496126_0001551 Ga0496126_0001551_3172_4683 500
123 3300048929 Ga0496126_0068582 Ga0496126_0068582_282_1820 500
124 3300049581 Ga0501047_0005747 Ga0501047_0005747_5211_6722 500
125 3300049586 Ga0501070_0041529 Ga0501070_0041529_2019_3530 500
126 iso_pu_bacteria 2773857763 2774400984 500
127 iso_pu_bacteria 2808606447 2809225563 500
128 iso_pu_bacteria 2821268502 2821268594 500
129 iso_pu_bacteria 8045830549 8045831142 500
130 3300003578 Ga0006562J51391_1146641 Ga0006562J51391_11466413 501
131 3300003752 Ga0055539_1000019 Ga0055539_1000019111 501
132 3300003756 Ga0055533_1000023 Ga0055533_1000023214 501
133 3300003759 Ga0055525_1000125 Ga0055525_100012511 501
134 3300003841 Ga0055541_1006493 Ga0055541_10064931 501
135 3300025225 Ga0209566_100031 Ga0209566_100031214 501
136 3300025226 Ga0209674_100001 Ga0209674_1000011939 501
137 3300025230 Ga0209563_100001 Ga0209563_1000011939 501
138 3300025230 Ga0209563_100609 Ga0209563_1006099 501
139 3300025253 Ga0209677_100001 Ga0209677_1000011939 501
140 3300025272 Ga0209455_1003210 Ga0209455_10032107 501
141 3300031901 Ga0307406_10000016 Ga0307406_1000001682 501
142 3300044658 Ga0466972_0021625 Ga0466972_0021625_208_1746 501
143 3300044842 Ga0466957_0030078 Ga0466957_0030078_983_2512 501
144 3300045049 Ga0466959_0007690 Ga0466959_0007690_2419_3948 501
145 3300048918 Ga0496115_0123614 Ga0496115_0123614_579_2099 501
146 3300048919 Ga0496116_0042423 Ga0496116_0042423_836_2350 501
147 3300048920 Ga0496117_0000178 Ga0496117_0000178_111607_113118 501
148 3300048920 Ga0496117_0032596 Ga0496117_0032596_1870_3387 501
149 3300048920 Ga0496117_0107829 Ga0496117_0107829_177_1691 501
150 3300048921 Ga0496118_0006045 Ga0496118_0006045_2064_3578 501
151 3300048925 Ga0496122_0039571 Ga0496122_0039571_1851_3368 501
152 3300048926 Ga0496123_0045193 Ga0496123_0045193_504_2021 501
153 3300048928 Ga0496125_0000550 Ga0496125_0000550_14454_15977 501
154 3300048929 Ga0496126_0041223 Ga0496126_0041223_1884_3425 501
155 3300048929 Ga0496126_0168521 Ga0496126_0168521_283_1803 501
156 3300053080 Ga0500635_0000002 Ga0500635_0000002_115368_116882 501
157 iso_pu_bacteria 2945968032 2945970362 501
158 iso_pu_bacteria 8004212874 8004215116 501
159 3300005338 Ga0068868_100014181 Ga0068868_1000141816 502
160 3300005366 Ga0070659_100028390 Ga0070659_1000283904 502
161 3300005367 Ga0070667_100093376 Ga0070667_1000933762 502
162 3300009177 Ga0105248_10057404 Ga0105248_100574043 502
163 3300009545 Ga0105237_10138760 Ga0105237_101387605 502
164 3300025904 Ga0207647_10007091 Ga0207647_100070912 502
165 3300025913 Ga0207695_10014110 Ga0207695_100141108 502
166 3300025927 Ga0207687_10017317 Ga0207687_100173172 502
167 3300025932 Ga0207690_10001773 Ga0207690_1000177313 502
168 3300025941 Ga0207711_10033147 Ga0207711_100331476 502
169 3300025986 Ga0207658_10125339 Ga0207658_101253392 502
170 3300026023 Ga0207677_10036545 Ga0207677_100365454 502
171 3300026041 Ga0207639_10050590 Ga0207639_100505902 502
172 3300048920 Ga0496117_0011452 Ga0496117_0011452_2899_4410 502
173 3300048921 Ga0496118_0012992 Ga0496118_0012992_692_2203 502
174 3300048922 Ga0496119_0010210 Ga0496119_0010210_5910_7421 502
175 3300048923 Ga0496120_0000356 Ga0496120_0000356_22137_23648 502
176 3300048923 Ga0496120_0040482 Ga0496120_0040482_83_1594 502
177 3300049568 Ga0501031_0053238 Ga0501031_0053238_53_1600 502
178 3300049571 Ga0501034_0010949 Ga0501034_0010949_2284_3831 502
179 3300049573 Ga0501037_0011456 Ga0501037_0011456_2469_4016 502
180 3300049574 Ga0501038_0024082 Ga0501038_0024082_2191_3738 502
181 3300049575 Ga0501039_0010895 Ga0501039_0010895_2865_4412 502
182 3300049580 Ga0501046_0009697 Ga0501046_0009697_5641_7188 502
183 3300049584 Ga0501068_0042127 Ga0501068_0042127_857_2404 502
184 3300049584 Ga0501068_0113972 Ga0501068_0113972_79_1599 502
185 3300049822 Ga0501035_0030938 Ga0501035_0030938_3061_4608 502
186 3300053136 Ga0500559_0039389 Ga0500559_0039389_157_1674 502
187 iso_pu_bacteria 2643221566 2643847552 502
188 iso_pu_bacteria 2643221575 2643887289 502
189 iso_pu_bacteria 2643221597 2643997575 502
190 3300009036 Ga0105244_10020833 Ga0105244_100208333 503
191 3300048920 Ga0496117_0000070 Ga0496117_0000070_60271_61788 503
192 3300048922 Ga0496119_0007300 Ga0496119_0007300_3287_4804 503
193 3300048922 Ga0496119_0011045 Ga0496119_0011045_5040_6557 503
194 3300048922 Ga0496119_0041187 Ga0496119_0041187_217_1758 503
195 3300048923 Ga0496120_0000462 Ga0496120_0000462_58574_60091 503
196 3300048923 Ga0496120_0002073 Ga0496120_0002073_14669_16186 503
197 3300048925 Ga0496122_0004299 Ga0496122_0004299_3548_5065 503
198 3300048926 Ga0496123_0019523 Ga0496123_0019523_669_2186 503
199 3300048927 Ga0496124_0007313 Ga0496124_0007313_5586_7103 503
200 3300048928 Ga0496125_0014913 Ga0496125_0014913_4317_5834 503
201 3300048929 Ga0496126_0019411 Ga0496126_0019411_1835_3352 503
202 iso_pu_bacteria 2852646457 2852648289 503
203 iso_pu_bacteria 2919395869 2919397038 503
204 iso_pu_bacteria 2946033335 2946035131 503
205 iso_pu_bacteria 2964326757 2964328250 503
206 3300005842 Ga0068858_100005146 Ga0068858_10000514610 504
207 3300006038 Ga0075365_10002752 Ga0075365_100027526 504
208 3300006048 Ga0075363_100006583 Ga0075363_1000065833 504
209 3300006178 Ga0075367_10000845 Ga0075367_1000084513 504
210 3300009148 Ga0105243_10001512 Ga0105243_1000151214 504
211 3300013306 Ga0163162_10126457 Ga0163162_101264572 504
212 3300025728 Ga0207655_1002108 Ga0207655_100210812 504
213 3300025728 Ga0207655_1024536 Ga0207655_10245362 504
214 3300025935 Ga0207709_10002516 Ga0207709_100025164 504
215 3300026035 Ga0207703_10000607 Ga0207703_1000060710 504
216 3300048904 Ga0496101_0019441 Ga0496101_0019441_1485_3014 504
217 3300048908 Ga0496105_0044943 Ga0496105_0044943_970_2499 504
218 3300048910 Ga0496107_0013751 Ga0496107_0013751_2510_4039 504
219 3300048912 Ga0496109_0004774 Ga0496109_0004774_4726_6255 504
220 3300048915 Ga0496112_0059043 Ga0496112_0059043_2108_3637 504
221 3300048916 Ga0496113_0014519 Ga0496113_0014519_272_1801 504
222 3300048918 Ga0496115_0126722 Ga0496115_0126722_220_1749 504
223 3300050490 nmdc:mga03n38_22756_c1 nmdc:mga03n38_22756_c1_914_2437 504
224 3300050491 nmdc:mga00v17_45640_c1 nmdc:mga00v17_45640_c1_570_2093 504
225 3300050492 nmdc:mga0yw44_3374_c1 nmdc:mga0yw44_3374_c1_3603_5126 504
226 3300050494 nmdc:mga06z11_1302_c1 nmdc:mga06z11_1302_c1_5595_7118 504
227 iso_pu_bacteria 2643221553 2643783862 504
228 iso_pu_bacteria 2643221724 2644678936 504
229 iso_pu_bacteria 2728369380 2730228448 504
230 iso_pu_bacteria 2747842429 2747954678 504
231 iso_pu_bacteria 2852632344 2852635586 504
232 3300014326 Ga0157380_10235410 Ga0157380_102354101 505
233 3300048920 Ga0496117_0005093 Ga0496117_0005093_6391_7911 505
234 3300048922 Ga0496119_0000888 Ga0496119_0000888_9277_10797 505
235 3300048923 Ga0496120_0022021 Ga0496120_0022021_2186_3706 505
236 3300048925 Ga0496122_0000105 Ga0496122_0000105_45032_46552 505
237 3300048926 Ga0496123_0000075 Ga0496123_0000075_147965_149485 505
238 3300048927 Ga0496124_0028271 Ga0496124_0028271_1668_3188 505
239 3300048929 Ga0496126_0059187 Ga0496126_0059187_726_2246 505
240 3300005543 Ga0070672_100016086 Ga0070672_1000160862 506
241 3300005563 Ga0068855_100022489 Ga0068855_1000224897 506
242 3300025940 Ga0207691_10047196 Ga0207691_100471965 506
243 3300025949 Ga0207667_10077946 Ga0207667_100779465 506
244 3300053093 Ga0500651_0000494 Ga0500651_0000494_6730_8253 506
245 iso_pu_bacteria 2643221542 2643734574 506
246 iso_pu_bacteria 2643221630 2644172700 506
247 iso_pu_bacteria 2852663356 2852667196 506
248 iso_pu_bacteria 2857723135 2857727043 506
249 iso_pu_bacteria 2946041624 2946042741 506
250 iso_pu_bacteria 2946080515 2946082318 506
251 iso_pu_bacteria 8004182704 8004183290 506
252 3300013102 Ga0157371_10046364 Ga0157371_100463642 507
253 3300013307 Ga0157372_10195704 Ga0157372_101957042 508
254 3300031911 Ga0307412_10012600 Ga0307412_100126002 508
255 3300032004 Ga0307414_10131224 Ga0307414_101312242 508
256 3300048929 Ga0496126_0055779 Ga0496126_0055779_1913_3439 508
257 3300048928 Ga0496125_0029737 Ga0496125_0029737_2924_4453 509
258 3300002738 JGI25154J39366_1001535 JGI25154J39366_10015358 510
259 3300025246 Ga0209646_1000041 Ga0209646_1000041116 510
260 3300031901 Ga0307406_10001063 Ga0307406_1000106310 510
261 3300032004 Ga0307414_10028360 Ga0307414_100283604 510
262 3300046453 Ga0495627_000238 Ga0495627_000238_21173_22705 510
263 3300048920 Ga0496117_0000196 Ga0496117_0000196_73811_75352 510
264 3300048922 Ga0496119_0031081 Ga0496119_0031081_589_2127 510
265 3300048928 Ga0496125_0012337 Ga0496125_0012337_6453_7994 510
266 3300048929 Ga0496126_0027873 Ga0496126_0027873_580_2121 510

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00152

tRNA-synt_2

tRNA synthetases class II (D, K and N)

180

518

0.97

PF01336

tRNA_anti-codon

OB-fold nucleic acid binding domain

86

165

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7qh8-assembly1.cif.gz_A-2 crystal structure of lysyl-trna synthetase from mycobacterium tuberculosis complexed with l-lysine 0.8875 23 507
6aqh-assembly2.cif.gz_B crystal structure of lysyl-trna synthetase from mycobacterium thermoresistibile complexed with l-lysine and cladosporin 0.8864 20 510
7qi8-assembly1.cif.gz_A-2 crystal structure of lysyl-trna synthetase from mycobacterium tuberculosis complexed with l-lysine and inhibitor 0.8846 24 507
6aqg-assembly3.cif.gz_C crystal structure of lysyl-trna synthetase from mycobacterium ulcerans complexed with l-lysine and cladosporin 0.8833 21 510
7qhn-assembly1.cif.gz_A-2 crystal structure of lysyl-trna synthetase from mycobacterium tuberculosis complexed with l-lysine and an inhibitor 0.8833 24 507
ID Description Score Start End Superfamily
6aqhD01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9826 23 164 2.40.50.140
6aqhD01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.942 23 164 2.40.50.140
af_Q9LJE2_81_222_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9263 22 164 2.40.50.140
4ex5B01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9194 22 164 2.40.50.140
af_Q9LJE2_81_222_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9138 22 164 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A2S9FML7-F1-model_v4 Lysine--tRNA ligase 0.9859 25 164 GO:0000049
GO:0000166
GO:0004824
GO:0005829
GO:0006430
AF-A0A2S8MXE8-F1-model_v4 deleted 0.9823 407 498
AF-A0A2K1KNA6-F1-model_v4 Aminoacyl-tRNA synthetase class II (D/K/N) domain-containing protein 0.9777 400 482 GO:0004812
GO:0005524
GO:0006418
AF-A0A3E2CIZ8-F1-model_v4 deleted 0.9738 23 162
AF-A0A2S8MXE8-F1-model_v4 deleted 0.9719 407 498

Feature Viewer

pLDDT pTM Quality
82.96 0.74 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map