F373093

General Info

Members Datasets Scaffolds Average Seq Length
265 152 265 129

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_100929200|Ga0068869_1009292001
Length 150
Sequence MRILLVGSPVERARLRAQIDGSMDVAGEFESLAAAQAVAGRVDAIVVAPDVFEADQDTIGASDGTRPVRTEQSGGLAWDDDDGPQEPLTPREIQVLELLAEGLPNKAIATRLRISDQTVKFHVSSISGKLGAANRTDAVRRAVRRGLITL

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
24 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
29 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
44 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
45 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
46 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
47 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
48 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
49 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
50 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
53 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
61 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
62 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
63 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
69 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
70 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
71 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
100 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
103 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
104 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
105 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
106 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
107 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
110 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
111 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
112 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
113 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
114 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
115 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
116 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
117 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
118 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
119 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
120 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
121 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
122 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
123 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
124 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
125 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
126 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
127 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
128 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
129 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
135 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
136 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
137 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
138 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
139 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
140 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
141 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
142 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
143 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
144 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
145 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
146 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
147 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
148 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
149 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
150 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
151 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
152 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.38
Nodule 0
Rhizoplane 4.15
Rhizosphere 95.47
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10110934 3300003203 Bacteria 812
2 Ga0065712_10069100 3300005290 Bacteria 8020
3 Ga0065712_10126128 3300005290 Bacteria 1605
4 Ga0070670_100020506 3300005331 Bacteria 5683
5 Ga0068869_100929200 3300005334 Bacteria 754
6 Ga0070668_102116821 3300005347 Bacteria 519
7 Ga0070669_100022001 3300005353 Bacteria 4560
8 Ga0070669_100236881 3300005353 Bacteria 1448
9 Ga0070669_101891138 3300005353 Unclassified 521
10 Ga0070675_100000204 3300005354 Bacteria 37628
11 Ga0070675_100102316 3300005354 Bacteria 2414
12 Ga0070675_101042110 3300005354 Bacteria 752
13 Ga0070673_100494802 3300005364 Bacteria 1105
14 Ga0070673_101091892 3300005364 Bacteria 745
15 Ga0070688_100528751 3300005365 Bacteria 893
16 Ga0070709_10176236 3300005434 Bacteria 1498
17 Ga0070714_100122068 3300005435 Bacteria 2318
18 Ga0070713_101831797 3300005436 Bacteria 589
19 Ga0070694_100573069 3300005444 Unclassified 906
20 Ga0070708_100184565 3300005445 Bacteria 1950
21 Ga0070708_101076519 3300005445 Bacteria 753
22 Ga0070708_101311474 3300005445 Bacteria 676
23 Ga0070681_10058717 3300005458 Bacteria 3827
24 Ga0070681_10658758 3300005458 Bacteria 962
25 Ga0068867_100064733 3300005459 Bacteria 2719
26 Ga0068867_100093665 3300005459 Bacteria 2283
27 Ga0070706_100379832 3300005467 Bacteria 1316
28 Ga0070706_100442299 3300005467 Bacteria 1210
29 Ga0070707_100320945 3300005468 Bacteria 1505
30 Ga0070707_100369706 3300005468 Unclassified 1393
31 Ga0070698_100298892 3300005471 Bacteria 1540
32 Ga0070698_100675907 3300005471 Unclassified 974
33 Ga0070699_100037950 3300005518 Bacteria 4171
34 Ga0070679_100178447 3300005530 Bacteria 2097
35 Ga0070679_100220809 3300005530 Bacteria 1856
36 Ga0070697_100587510 3300005536 Bacteria 978
37 Ga0070697_100818795 3300005536 Unclassified 824
38 Ga0070695_100006575 3300005545 Bacteria 6868
39 Ga0070696_100145236 3300005546 Bacteria 1737
40 Ga0070665_101100904 3300005548 Bacteria 806
41 Ga0070704_100191042 3300005549 Bacteria 1646
42 Ga0070704_100202793 3300005549 Unclassified 1602
43 Ga0070704_100373912 3300005549 Bacteria 1209
44 Ga0068855_101043683 3300005563 Bacteria 857
45 Ga0068855_101199192 3300005563 Bacteria 789
46 Ga0068857_101175297 3300005577 Bacteria 742
47 Ga0068854_100341552 3300005578 Bacteria 1223
48 Ga0068854_101188810 3300005578 Bacteria 683
49 Ga0068854_102121827 3300005578 Bacteria 519
50 Ga0068859_100152065 3300005617 Bacteria 2390
51 Ga0068864_102220904 3300005618 Bacteria 555
52 Ga0068866_10086760 3300005718 Bacteria 1694
53 Ga0068861_100358756 3300005719 Bacteria 1281
54 Ga0068861_100885137 3300005719 Bacteria 844
55 Ga0068863_101870698 3300005841 Bacteria 610
56 Ga0068858_100183518 3300005842 Bacteria 1976
57 Ga0068858_100624463 3300005842 Unclassified 1046
58 Ga0068860_100462122 3300005843 Bacteria 1263
59 Ga0068860_101068311 3300005843 Unclassified 826
60 Ga0068862_100264740 3300005844 Bacteria 1570
61 Ga0068862_100499374 3300005844 Bacteria 1154
62 Ga0068862_100748711 3300005844 Bacteria 950
63 Ga0081539_10072466 3300005985 Bacteria 1841
64 Ga0070715_10089704 3300006163 Bacteria 1412
65 Ga0075366_11027770 3300006195 Unclassified 514
66 Ga0097621_100107056 3300006237 Bacteria 2359
67 Ga0097621_100176801 3300006237 Bacteria 1843
68 Ga0068871_100020131 3300006358 Bacteria 5106
69 Ga0068871_101613086 3300006358 Bacteria 614
70 Ga0075428_100023681 3300006844 Bacteria 6796
71 Ga0075428_100098832 3300006844 Bacteria 3182
72 Ga0075430_100011171 3300006846 Bacteria 7611
73 Ga0075431_100295255 3300006847 Bacteria 1638
74 Ga0075433_10055303 3300006852 Bacteria 3464
75 Ga0075433_10090358 3300006852 Bacteria 2707
76 Ga0075433_11091987 3300006852 Unclassified 694
77 Ga0075434_100000026 3300006871 Bacteria 68165
78 Ga0075434_100327239 3300006871 Bacteria 1553
79 Ga0075434_100804495 3300006871 Unclassified 956
80 Ga0075434_100954968 3300006871 Unclassified 872
81 Ga0075434_101036866 3300006871 Bacteria 834
82 Ga0075429_100022685 3300006880 Bacteria 5442
83 Ga0075429_100958626 3300006880 Bacteria 748
84 Ga0068865_100933683 3300006881 Unclassified 756
85 Ga0075436_100000600 3300006914 Bacteria 23619
86 Ga0075436_100009299 3300006914 Bacteria 6724
87 Ga0075436_100609531 3300006914 Bacteria 805
88 Ga0075436_100811068 3300006914 Bacteria 697
89 Ga0097620_100152063 3300006931 Bacteria 2390
90 Ga0075435_100000017 3300007076 Bacteria 99666
91 Ga0075435_100006307 3300007076 Bacteria 8375
92 Ga0075435_100019935 3300007076 Bacteria 5128
93 Ga0075435_100039084 3300007076 Bacteria 3786
94 Ga0105240_10023991 3300009093 Bacteria 8057
95 Ga0105240_10096192 3300009093 Bacteria 3610
96 Ga0105240_10801967 3300009093 Bacteria 1020
97 Ga0111539_10018618 3300009094 Bacteria 8604
98 Ga0111539_10098840 3300009094 Bacteria 3427
99 Ga0111539_10213161 3300009094 Bacteria 2250
100 Ga0111539_10314980 3300009094 Unclassified 1821
101 Ga0111539_13426077 3300009094 Bacteria 510
102 Ga0105247_10284939 3300009101 Bacteria 1141
103 Ga0114129_10008732 3300009147 Bacteria 14448
104 Ga0114129_10063076 3300009147 Bacteria 5176
105 Ga0114129_10089032 3300009147 Bacteria 4279
106 Ga0114129_10105469 3300009147 Bacteria 3895
107 Ga0114129_10110262 3300009147 Bacteria 3799
108 Ga0114129_10224866 3300009147 Bacteria 2530
109 Ga0114129_11644200 3300009147 Bacteria 785
110 Ga0114129_11886685 3300009147 Bacteria 725
111 Ga0105243_11097633 3300009148 Bacteria 804
112 Ga0105243_12758633 3300009148 Unclassified 532
113 Ga0105248_10015692 3300009177 Bacteria 8349
114 Ga0105248_10072035 3300009177 Bacteria 3883
115 Ga0105248_10555591 3300009177 Bacteria 1295
116 Ga0105237_10492049 3300009545 Bacteria 1233
117 Ga0105249_10074497 3300009553 Bacteria 3142
118 Ga0105249_10178632 3300009553 Bacteria 2064
119 Ga0105249_11866824 3300009553 Unclassified 673
120 Ga0157370_11661627 3300013104 Unclassified 573
121 Ga0157369_10909007 3300013105 Bacteria 902
122 Ga0157374_12435435 3300013296 Bacteria 551
123 Ga0163162_11892848 3300013306 Unclassified 683
124 Ga0157375_10410344 3300013308 Bacteria 1521
125 Ga0163163_10106152 3300014325 Unclassified 2834
126 Ga0157380_10767363 3300014326 Bacteria 978
127 Ga0157377_10395124 3300014745 Bacteria 940
128 Ga0157379_10017929 3300014968 Bacteria 6237
129 Ga0157379_10334514 3300014968 Bacteria 1384
130 Ga0163161_11741861 3300017792 Bacteria 553
131 Ga0207682_10251122 3300025893 Unclassified 823
132 Ga0207642_10009984 3300025899 Bacteria 3326
133 Ga0207710_10147969 3300025900 Bacteria 1138
134 Ga0207699_10560866 3300025906 Bacteria 829
135 Ga0207684_10344190 3300025910 Bacteria 1284
136 Ga0207707_10048200 3300025912 Bacteria 3711
137 Ga0207707_10577906 3300025912 Bacteria 953
138 Ga0207695_10164542 3300025913 Bacteria 2147
139 Ga0207695_11176655 3300025913 Bacteria 647
140 Ga0207671_10592106 3300025914 Bacteria 884
141 Ga0207660_10308651 3300025917 Bacteria 1261
142 Ga0207652_10061614 3300025921 Bacteria 3240
143 Ga0207652_10160388 3300025921 Bacteria 2016
144 Ga0207646_10068402 3300025922 Bacteria 3171
145 Ga0207646_10074523 3300025922 Bacteria 3032
146 Ga0207646_10239663 3300025922 Bacteria 1638
147 Ga0207646_10749754 3300025922 Bacteria 871
148 Ga0207646_11846507 3300025922 Bacteria 516
149 Ga0207681_10142506 3300025923 Bacteria 1786
150 Ga0207681_10928477 3300025923 Bacteria 729
151 Ga0207659_10000201 3300025926 Bacteria 35674
152 Ga0207659_10336555 3300025926 Bacteria 1249
153 Ga0207700_10891804 3300025928 Bacteria 796
154 Ga0207709_10025070 3300025935 Bacteria 3412
155 Ga0207709_10192447 3300025935 Bacteria 1450
156 Ga0207709_11682625 3300025935 Unclassified 527
157 Ga0207669_10053151 3300025937 Bacteria 2438
158 Ga0207711_10454452 3300025941 Bacteria 1192
159 Ga0207651_11444503 3300025960 Bacteria 619
160 Ga0207712_11141100 3300025961 Bacteria 694
161 Ga0207668_10581999 3300025972 Bacteria 973
162 Ga0207640_10744632 3300025981 Bacteria 844
163 Ga0207640_11680735 3300025981 Bacteria 573
164 Ga0207658_10906606 3300025986 Bacteria 803
165 Ga0207703_10090877 3300026035 Bacteria 2566
166 Ga0207703_10283301 3300026035 Bacteria 1506
167 Ga0207703_10585635 3300026035 Unclassified 1054
168 Ga0207639_10337536 3300026041 Bacteria 1343
169 Ga0207641_11631422 3300026088 Bacteria 647
170 Ga0207648_10068934 3300026089 Bacteria 3082
171 Ga0207648_10156404 3300026089 Bacteria 2012
172 Ga0207676_12059614 3300026095 Bacteria 569
173 Ga0207675_100127202 3300026118 Bacteria 2414
174 Ga0207675_100535546 3300026118 Bacteria 1169
175 Ga0207675_100736795 3300026118 Bacteria 996
176 Ga0207675_101046236 3300026118 Bacteria 835
177 Ga0207675_101839846 3300026118 Bacteria 624
178 Ga0207428_10193878 3300027907 Unclassified 1531
179 Ga0207428_10319081 3300027907 Bacteria 1148
180 Ga0268265_10301085 3300028380 Bacteria 1444
181 Ga0268264_10987597 3300028381 Unclassified 848
182 Ga0268264_11091958 3300028381 Bacteria 806
183 Ga0268264_11564559 3300028381 Bacteria 670
184 Ga0268264_11613633 3300028381 Bacteria 659
185 Ga0307416_101087381 3300032002 Bacteria 904
186 Ga0307416_101234325 3300032002 Bacteria 853
187 Ga0373941_0473745 3300035115 Bacteria 529
188 Ga0373943_0010480 3300035170 Bacteria 4154
189 Ga0373946_0159470 3300035171 Bacteria 1058
190 Ga0373935_0932501 3300035692 Unclassified 644
191 Ga0373937_0488504 3300036401 Unclassified 1170
192 Ga0373937_0821782 3300036401 Bacteria 877
193 Ga0373937_1270271 3300036401 Unclassified 684
194 Ga0395901_1893130 3300038443 Unclassified 544
195 Ga0439433_0070116 3300041999 Bacteria 844
196 Ga0439446_0009337 3300042156 Bacteria 2625
197 Ga0439435_0083153 3300042436 Unclassified 963
198 Ga0439440_0103486 3300042993 Bacteria 777
199 Ga0466963_0115702 3300044694 Bacteria 1843
200 Ga0466967_0496338 3300045976 Bacteria 1197
201 Ga0466967_1288337 3300045976 Bacteria 728
202 Ga0495580_0960628 3300046472 Bacteria 546
203 Ga0495630_0433446 3300046517 Bacteria 1007
204 Ga0495640_0255688 3300046533 Bacteria 1096
205 Ga0495633_0520431 3300046558 Bacteria 536
206 Ga0496100_0004212 3300048903 Bacteria 7595
207 Ga0496101_0000478 3300048904 Bacteria 25246
208 Ga0496101_0234562 3300048904 Bacteria 1427
209 Ga0496102_0228046 3300048905 Bacteria 1756
210 Ga0496104_0026816 3300048907 Bacteria 5326
211 Ga0496105_0053821 3300048908 Bacteria 3324
212 Ga0496106_0122678 3300048909 Bacteria 2032
213 Ga0496107_0091990 3300048910 Bacteria 2217
214 Ga0496109_0088313 3300048912 Bacteria 2865
215 Ga0496114_0000432 3300048917 Bacteria 30922
216 Ga0496115_0577269 3300048918 Bacteria 896
217 Ga0501039_0065978 3300049575 Bacteria 2809
218 Ga0501040_0137238 3300049576 Unclassified 1722
219 Ga0501042_0015271 3300049578 Bacteria 5257
220 Ga0501043_0262280 3300049579 Bacteria 1328
221 Ga0501046_0013956 3300049580 Bacteria 6786
222 Ga0501067_0132075 3300049583 Bacteria 1390
223 Ga0501072_0008192 3300049588 Bacteria 7935
224 Ga0501075_0040476 3300049591 Bacteria 3490
225 Ga0501075_0584125 3300049591 Bacteria 852
226 Ga0501233_261186 3300049668 Bacteria 524
227 Ga0501079_0101750 3300049741 Unclassified 2228
228 Ga0501081_0122713 3300049743 Unclassified 1852
229 Ga0501044_1465780 3300049823 Bacteria 548
230 nmdc:mga05p37_1122498_c1 3300050507 Bacteria 821
231 nmdc:mga05p37_16284_c1 3300050507 Bacteria 8950
232 nmdc:mga05p37_171806_c1 3300050507 Bacteria 2643
233 nmdc:mga05p37_175513_c1 3300050507 Unclassified 2611
234 nmdc:mga05p37_444349_c1 3300050507 Bacteria 1503
235 nmdc:mga05p37_446811_c1 3300050507 Bacteria 1498
236 nmdc:mga09592_1199944_c1 3300050508 Unclassified 627
237 nmdc:mga09592_12423_c1 3300050508 Bacteria 6935
238 nmdc:mga0qj67_206945_c1 3300050509 Bacteria 1594
239 nmdc:mga06r32_314438_c1 3300050510 Bacteria 1552
240 nmdc:mga08y16_77706_c1 3300050511 Bacteria 3461
241 nmdc:mga0n895_157888_c1 3300050512 Bacteria 2299
242 nmdc:mga0n895_2064982_c1 3300050512 Bacteria 527
243 nmdc:mga0n895_234570_c1 3300050512 Bacteria 1862
244 nmdc:mga0n895_36632_c1 3300050512 Bacteria 4739
245 nmdc:mga0n895_37_c1 3300050512 Bacteria 77167
246 nmdc:mga0n895_79886_c1 3300050512 Bacteria 3258
247 nmdc:mga0n895_883798_c1 3300050512 Unclassified 880
248 nmdc:mga0rr50_1066174_c1 3300050513 Bacteria 688
249 nmdc:mga0rr50_14_c1 3300050513 Bacteria 196574
250 nmdc:mga0rr50_153037_c1 3300050513 Bacteria 1866
251 nmdc:mga0rr50_1724_c1 3300050513 Bacteria 12052
252 nmdc:mga0rr50_210485_c1 3300050513 Bacteria 1602
253 nmdc:mga0rr50_24164_c1 3300050513 Bacteria 4205
254 nmdc:mga08x19_1243985_c1 3300050514 Bacteria 527
255 nmdc:mga08x19_233406_c1 3300050514 Bacteria 1267
256 nmdc:mga08x19_275_c1 3300050514 Bacteria 38855
257 nmdc:mga08x19_54203_c1 3300050514 Bacteria 2581
258 nmdc:mga08x19_598371_c1 3300050514 Bacteria 781
259 nmdc:mga08x19_7678_c1 3300050514 Bacteria 6403
260 nmdc:mga0a205_238876_c1 3300050515 Bacteria 1698
261 nmdc:mga0a205_49331_c1 3300050515 Bacteria 4063
262 nmdc:mga0a205_72273_c2 3300050515 Unclassified 720
263 Ga0501084_0039861 3300054114 Bacteria 3928
264 Ga0466962_0639641 3300061719 Unclassified 544
265 Ga0530510_0002371 3300061734 Bacteria 12944

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026118 Ga0207675_100736795 Ga0207675_1007367952 109
2 3300006847 Ga0075431_100295255 Ga0075431_1002952552 111
3 3300027907 Ga0207428_10193878 Ga0207428_101938782 111
4 3300025917 Ga0207660_10308651 Ga0207660_103086512 113
5 3300036401 Ga0373937_1270271 Ga0373937_1270271_165_545 114
6 3300046517 Ga0495630_0433446 Ga0495630_0433446_401_781 114
7 3300046533 Ga0495640_0255688 Ga0495640_0255688_524_904 114
8 3300007076 Ga0075435_100006307 Ga0075435_1000063074 116
9 3300050512 nmdc:mga0n895_234570_c1 nmdc:mga0n895_234570_c1_1058_1456 116
10 3300050513 nmdc:mga0rr50_1724_c1 nmdc:mga0rr50_1724_c1_5945_6343 116
11 3300025893 Ga0207682_10251122 Ga0207682_102511222 117
12 3300005458 Ga0070681_10658758 Ga0070681_106587582 118
13 3300005530 Ga0070679_100178447 Ga0070679_1001784472 118
14 3300025912 Ga0207707_10577906 Ga0207707_105779062 118
15 3300025921 Ga0207652_10160388 Ga0207652_101603882 118
16 3300005290 Ga0065712_10069100 Ga0065712_100691003 120
17 3300005435 Ga0070714_100122068 Ga0070714_1001220681 120
18 3300005436 Ga0070713_101831797 Ga0070713_1018317971 120
19 3300005459 Ga0068867_100093665 Ga0068867_1000936652 120
20 3300005467 Ga0070706_100442299 Ga0070706_1004422992 120
21 3300005471 Ga0070698_100298892 Ga0070698_1002988922 120
22 3300005471 Ga0070698_100675907 Ga0070698_1006759071 120
23 3300005563 Ga0068855_101199192 Ga0068855_1011991922 120
24 3300005578 Ga0068854_102121827 Ga0068854_1021218271 120
25 3300005842 Ga0068858_100183518 Ga0068858_1001835183 120
26 3300006237 Ga0097621_100176801 Ga0097621_1001768012 120
27 3300006844 Ga0075428_100098832 Ga0075428_1000988322 120
28 3300006852 Ga0075433_10055303 Ga0075433_100553031 120
29 3300006871 Ga0075434_100000026 Ga0075434_10000002635 120
30 3300006871 Ga0075434_100804495 Ga0075434_1008044952 120
31 3300006914 Ga0075436_100000600 Ga0075436_10000060012 120
32 3300006914 Ga0075436_100609531 Ga0075436_1006095311 120
33 3300007076 Ga0075435_100000017 Ga0075435_10000001758 120
34 3300007076 Ga0075435_100019935 Ga0075435_1000199354 120
35 3300009093 Ga0105240_10023991 Ga0105240_100239916 120
36 3300009093 Ga0105240_10801967 Ga0105240_108019672 120
37 3300009094 Ga0111539_10018618 Ga0111539_100186188 120
38 3300009147 Ga0114129_11644200 Ga0114129_116442002 120
39 3300009177 Ga0105248_10015692 Ga0105248_100156923 120
40 3300009545 Ga0105237_10492049 Ga0105237_104920493 120
41 3300013308 Ga0157375_10410344 Ga0157375_104103442 120
42 3300014968 Ga0157379_10334514 Ga0157379_103345142 120
43 3300025910 Ga0207684_10344190 Ga0207684_103441902 120
44 3300025913 Ga0207695_11176655 Ga0207695_111766551 120
45 3300025914 Ga0207671_10592106 Ga0207671_105921062 120
46 3300025922 Ga0207646_11846507 Ga0207646_118465071 120
47 3300025923 Ga0207681_10928477 Ga0207681_109284771 120
48 3300025928 Ga0207700_10891804 Ga0207700_108918042 120
49 3300025941 Ga0207711_10454452 Ga0207711_104544522 120
50 3300025981 Ga0207640_11680735 Ga0207640_116807351 120
51 3300026035 Ga0207703_10283301 Ga0207703_102833012 120
52 3300026089 Ga0207648_10068934 Ga0207648_100689343 120
53 3300027907 Ga0207428_10319081 Ga0207428_103190811 120
54 3300028381 Ga0268264_11613633 Ga0268264_116136331 120
55 3300032002 Ga0307416_101234325 Ga0307416_1012343252 120
56 3300035115 Ga0373941_0473745 Ga0373941_0473745_123_500 120
57 3300035170 Ga0373943_0010480 Ga0373943_0010480_1591_1956 120
58 3300035171 Ga0373946_0159470 Ga0373946_0159470_207_572 120
59 3300035692 Ga0373935_0932501 Ga0373935_0932501_253_618 120
60 3300036401 Ga0373937_0488504 Ga0373937_0488504_610_984 120
61 3300045976 Ga0466967_0496338 Ga0466967_0496338_111_512 120
62 3300049668 Ga0501233_261186 Ga0501233_261186_84_470 120
63 3300049823 Ga0501044_1465780 Ga0501044_1465780_97_462 120
64 3300050511 nmdc:mga08y16_77706_c1 nmdc:mga08y16_77706_c1_43_516 120
65 3300050512 nmdc:mga0n895_36632_c1 nmdc:mga0n895_36632_c1_819_1223 120
66 3300050512 nmdc:mga0n895_37_c1 nmdc:mga0n895_37_c1_37254_37640 120
67 3300050512 nmdc:mga0n895_79886_c1 nmdc:mga0n895_79886_c1_104_499 120
68 3300050513 nmdc:mga0rr50_14_c1 nmdc:mga0rr50_14_c1_89847_90233 120
69 3300050513 nmdc:mga0rr50_153037_c1 nmdc:mga0rr50_153037_c1_54_458 120
70 3300050513 nmdc:mga0rr50_210485_c1 nmdc:mga0rr50_210485_c1_103_498 120
71 3300050514 nmdc:mga08x19_275_c1 nmdc:mga08x19_275_c1_11050_11436 120
72 3300050515 nmdc:mga0a205_238876_c1 nmdc:mga0a205_238876_c1_443_838 120
73 3300005290 Ga0065712_10126128 Ga0065712_101261282 121
74 3300005331 Ga0070670_100020506 Ga0070670_1000205067 121
75 3300005353 Ga0070669_101891138 Ga0070669_1018911381 121
76 3300005354 Ga0070675_101042110 Ga0070675_1010421101 121
77 3300005364 Ga0070673_101091892 Ga0070673_1010918922 121
78 3300005365 Ga0070688_100528751 Ga0070688_1005287512 121
79 3300005577 Ga0068857_101175297 Ga0068857_1011752971 121
80 3300005617 Ga0068859_100152065 Ga0068859_1001520652 121
81 3300005618 Ga0068864_102220904 Ga0068864_1022209041 121
82 3300005842 Ga0068858_100624463 Ga0068858_1006244632 121
83 3300005844 Ga0068862_100748711 Ga0068862_1007487112 121
84 3300006195 Ga0075366_11027770 Ga0075366_110277701 121
85 3300006931 Ga0097620_100152063 Ga0097620_1001520632 121
86 3300009094 Ga0111539_10213161 Ga0111539_102131612 121
87 3300009094 Ga0111539_10314980 Ga0111539_103149802 121
88 3300009094 Ga0111539_13426077 Ga0111539_134260771 121
89 3300009101 Ga0105247_10284939 Ga0105247_102849391 121
90 3300009148 Ga0105243_12758633 Ga0105243_127586331 121
91 3300009553 Ga0105249_10074497 Ga0105249_100744973 121
92 3300009553 Ga0105249_11866824 Ga0105249_118668242 121
93 3300014325 Ga0163163_10106152 Ga0163163_101061523 121
94 3300014326 Ga0157380_10767363 Ga0157380_107673631 121
95 3300014968 Ga0157379_10017929 Ga0157379_1001792910 121
96 3300025900 Ga0207710_10147969 Ga0207710_101479691 121
97 3300025935 Ga0207709_11682625 Ga0207709_116826251 121
98 3300025961 Ga0207712_11141100 Ga0207712_111411001 121
99 3300025986 Ga0207658_10906606 Ga0207658_109066062 121
100 3300026035 Ga0207703_10090877 Ga0207703_100908772 121
101 3300026035 Ga0207703_10585635 Ga0207703_105856352 121
102 3300026095 Ga0207676_12059614 Ga0207676_120596142 121
103 3300028380 Ga0268265_10301085 Ga0268265_103010852 121
104 3300045976 Ga0466967_1288337 Ga0466967_1288337_190_612 121
105 3300048904 Ga0496101_0234562 Ga0496101_0234562_97_474 121
106 3300048905 Ga0496102_0228046 Ga0496102_0228046_40_417 121
107 3300048912 Ga0496109_0088313 Ga0496109_0088313_1076_1453 121
108 3300041999 Ga0439433_0070116 Ga0439433_0070116_102_482 122
109 3300042156 Ga0439446_0009337 Ga0439446_0009337_1229_1609 122
110 3300005434 Ga0070709_10176236 Ga0070709_101762362 123
111 3300005467 Ga0070706_100379832 Ga0070706_1003798322 123
112 3300006871 Ga0075434_101036866 Ga0075434_1010368662 123
113 3300025906 Ga0207699_10560866 Ga0207699_105608661 123
114 3300049583 Ga0501067_0132075 Ga0501067_0132075_396_791 123
115 3300050514 nmdc:mga08x19_54203_c1 nmdc:mga08x19_54203_c1_450_842 123
116 3300061719 Ga0466962_0639641 Ga0466962_0639641_104_532 123
117 3300005444 Ga0070694_100573069 Ga0070694_1005730691 124
118 3300005536 Ga0070697_100587510 Ga0070697_1005875102 124
119 3300007076 Ga0075435_100039084 Ga0075435_1000390843 124
120 3300009147 Ga0114129_10224866 Ga0114129_102248663 124
121 3300050507 nmdc:mga05p37_171806_c1 nmdc:mga05p37_171806_c1_637_1014 124
122 3300050513 nmdc:mga0rr50_24164_c1 nmdc:mga0rr50_24164_c1_1113_1487 124
123 3300050514 nmdc:mga08x19_598371_c1 nmdc:mga08x19_598371_c1_16_390 124
124 3300005458 Ga0070681_10058717 Ga0070681_100587174 125
125 3300005530 Ga0070679_100220809 Ga0070679_1002208092 125
126 3300005563 Ga0068855_101043683 Ga0068855_1010436832 125
127 3300005841 Ga0068863_101870698 Ga0068863_1018706981 125
128 3300005843 Ga0068860_100462122 Ga0068860_1004621222 125
129 3300006163 Ga0070715_10089704 Ga0070715_100897042 125
130 3300006237 Ga0097621_100107056 Ga0097621_1001070563 125
131 3300006358 Ga0068871_100020131 Ga0068871_1000201312 125
132 3300006844 Ga0075428_100023681 Ga0075428_1000236813 125
133 3300006846 Ga0075430_100011171 Ga0075430_1000111717 125
134 3300006852 Ga0075433_11091987 Ga0075433_110919872 125
135 3300006871 Ga0075434_100327239 Ga0075434_1003272392 125
136 3300006880 Ga0075429_100022685 Ga0075429_1000226853 125
137 3300006881 Ga0068865_100933683 Ga0068865_1009336832 125
138 3300006914 Ga0075436_100009299 Ga0075436_1000092995 125
139 3300006914 Ga0075436_100811068 Ga0075436_1008110682 125
140 3300009094 Ga0111539_10098840 Ga0111539_100988403 125
141 3300009147 Ga0114129_10008732 Ga0114129_1000873211 125
142 3300009147 Ga0114129_10110262 Ga0114129_101102623 125
143 3300013104 Ga0157370_11661627 Ga0157370_116616271 125
144 3300025912 Ga0207707_10048200 Ga0207707_100482004 125
145 3300025921 Ga0207652_10061614 Ga0207652_100616144 125
146 3300026088 Ga0207641_11631422 Ga0207641_116314222 125
147 3300028381 Ga0268264_11091958 Ga0268264_110919582 125
148 3300038443 Ga0395901_1893130 Ga0395901_1893130_93_470 125
149 3300042436 Ga0439435_0083153 Ga0439435_0083153_268_693 125
150 3300042993 Ga0439440_0103486 Ga0439440_0103486_127_552 125
151 3300048903 Ga0496100_0004212 Ga0496100_0004212_4923_5303 125
152 3300048904 Ga0496101_0000478 Ga0496101_0000478_17390_17770 125
153 3300048907 Ga0496104_0026816 Ga0496104_0026816_4797_5177 125
154 3300048908 Ga0496105_0053821 Ga0496105_0053821_136_516 125
155 3300048909 Ga0496106_0122678 Ga0496106_0122678_52_432 125
156 3300048910 Ga0496107_0091990 Ga0496107_0091990_874_1254 125
157 3300048917 Ga0496114_0000432 Ga0496114_0000432_16371_16751 125
158 3300048918 Ga0496115_0577269 Ga0496115_0577269_376_756 125
159 3300049591 Ga0501075_0584125 Ga0501075_0584125_243_623 125
160 3300050507 nmdc:mga05p37_1122498_c1 nmdc:mga05p37_1122498_c1_70_495 125
161 3300050507 nmdc:mga05p37_175513_c1 nmdc:mga05p37_175513_c1_555_932 125
162 3300050508 nmdc:mga09592_12423_c1 nmdc:mga09592_12423_c1_4641_5066 125
163 3300050509 nmdc:mga0qj67_206945_c1 nmdc:mga0qj67_206945_c1_1062_1487 125
164 3300050514 nmdc:mga08x19_1243985_c1 nmdc:mga08x19_1243985_c1_82_459 125
165 3300050514 nmdc:mga08x19_7678_c1 nmdc:mga08x19_7678_c1_3442_3831 125
166 3300050515 nmdc:mga0a205_72273_c2 nmdc:mga0a205_72273_c2_77_454 125
167 3300005536 Ga0070697_100818795 Ga0070697_1008187952 126
168 3300009147 Ga0114129_11886685 Ga0114129_118866851 126
169 3300009177 Ga0105248_10072035 Ga0105248_100720352 126
170 3300025922 Ga0207646_10749754 Ga0207646_107497541 126
171 3300036401 Ga0373937_0821782 Ga0373937_0821782_353_736 126
172 3300046472 Ga0495580_0960628 Ga0495580_0960628_72_455 126
173 3300050512 nmdc:mga0n895_157888_c1 nmdc:mga0n895_157888_c1_1021_1401 126
174 3300005354 Ga0070675_100000204 Ga0070675_10000020425 127
175 3300005364 Ga0070673_100494802 Ga0070673_1004948021 127
176 3300005445 Ga0070708_101076519 Ga0070708_1010765192 127
177 3300005468 Ga0070707_100320945 Ga0070707_1003209452 127
178 3300005518 Ga0070699_100037950 Ga0070699_1000379501 127
179 3300005843 Ga0068860_101068311 Ga0068860_1010683112 127
180 3300006358 Ga0068871_101613086 Ga0068871_1016130862 127
181 3300009147 Ga0114129_10063076 Ga0114129_100630764 127
182 3300009177 Ga0105248_10555591 Ga0105248_105555912 127
183 3300013296 Ga0157374_12435435 Ga0157374_124354351 127
184 3300013306 Ga0163162_11892848 Ga0163162_118928482 127
185 3300014745 Ga0157377_10395124 Ga0157377_103951242 127
186 3300025922 Ga0207646_10068402 Ga0207646_100684023 127
187 3300025926 Ga0207659_10000201 Ga0207659_100002018 127
188 3300025960 Ga0207651_11444503 Ga0207651_114445032 127
189 3300026118 Ga0207675_101046236 Ga0207675_1010462362 127
190 3300028381 Ga0268264_10987597 Ga0268264_109875972 127
191 3300028381 Ga0268264_11564559 Ga0268264_115645591 127
192 3300046558 Ga0495633_0520431 Ga0495633_0520431_89_472 127
193 3300050507 nmdc:mga05p37_16284_c1 nmdc:mga05p37_16284_c1_4074_4460 127
194 3300050512 nmdc:mga0n895_2064982_c1 nmdc:mga0n895_2064982_c1_93_479 127
195 3300005545 Ga0070695_100006575 Ga0070695_1000065754 128
196 3300005546 Ga0070696_100145236 Ga0070696_1001452362 128
197 3300005549 Ga0070704_100191042 Ga0070704_1001910421 128
198 3300006852 Ga0075433_10090358 Ga0075433_100903583 128
199 3300006871 Ga0075434_100954968 Ga0075434_1009549681 128
200 3300006880 Ga0075429_100958626 Ga0075429_1009586262 128
201 3300009147 Ga0114129_10089032 Ga0114129_100890325 128
202 3300009147 Ga0114129_10105469 Ga0114129_101054694 128
203 3300025922 Ga0207646_10074523 Ga0207646_100745231 128
204 3300049575 Ga0501039_0065978 Ga0501039_0065978_869_1303 128
205 3300049576 Ga0501040_0137238 Ga0501040_0137238_865_1299 128
206 3300049578 Ga0501042_0015271 Ga0501042_0015271_1997_2431 128
207 3300049579 Ga0501043_0262280 Ga0501043_0262280_443_877 128
208 3300049580 Ga0501046_0013956 Ga0501046_0013956_2126_2560 128
209 3300049588 Ga0501072_0008192 Ga0501072_0008192_4539_4973 128
210 3300049591 Ga0501075_0040476 Ga0501075_0040476_2282_2716 128
211 3300049741 Ga0501079_0101750 Ga0501079_0101750_1767_2201 128
212 3300049743 Ga0501081_0122713 Ga0501081_0122713_123_557 128
213 3300050507 nmdc:mga05p37_444349_c1 nmdc:mga05p37_444349_c1_1077_1472 128
214 3300050507 nmdc:mga05p37_446811_c1 nmdc:mga05p37_446811_c1_1005_1394 128
215 3300050508 nmdc:mga09592_1199944_c1 nmdc:mga09592_1199944_c1_65_460 128
216 3300050512 nmdc:mga0n895_883798_c1 nmdc:mga0n895_883798_c1_373_771 128
217 3300050513 nmdc:mga0rr50_1066174_c1 nmdc:mga0rr50_1066174_c1_56_454 128
218 3300050515 nmdc:mga0a205_49331_c1 nmdc:mga0a205_49331_c1_2056_2445 128
219 3300054114 Ga0501084_0039861 Ga0501084_0039861_1727_2161 128
220 3300061734 Ga0530510_0002371 Ga0530510_0002371_4620_5054 128
221 3300005445 Ga0070708_100184565 Ga0070708_1001845652 129
222 3300050514 nmdc:mga08x19_233406_c1 nmdc:mga08x19_233406_c1_573_962 129
223 3300005334 Ga0068869_100929200 Ga0068869_1009292001 130
224 3300005548 Ga0070665_101100904 Ga0070665_1011009042 130
225 3300009093 Ga0105240_10096192 Ga0105240_100961922 130
226 3300013105 Ga0157369_10909007 Ga0157369_109090072 130
227 3300025913 Ga0207695_10164542 Ga0207695_101645423 130
228 3300032002 Ga0307416_101087381 Ga0307416_1010873812 130
229 3300005347 Ga0070668_102116821 Ga0070668_1021168211 131
230 3300005353 Ga0070669_100022001 Ga0070669_1000220014 131
231 3300005353 Ga0070669_100236881 Ga0070669_1002368811 131
232 3300005354 Ga0070675_100102316 Ga0070675_1001023162 131
233 3300005445 Ga0070708_101311474 Ga0070708_1013114742 131
234 3300005459 Ga0068867_100064733 Ga0068867_1000647332 131
235 3300005549 Ga0070704_100373912 Ga0070704_1003739122 131
236 3300005578 Ga0068854_100341552 Ga0068854_1003415522 131
237 3300005718 Ga0068866_10086760 Ga0068866_100867602 131
238 3300005719 Ga0068861_100358756 Ga0068861_1003587562 131
239 3300005719 Ga0068861_100885137 Ga0068861_1008851372 131
240 3300005844 Ga0068862_100264740 Ga0068862_1002647401 131
241 3300005844 Ga0068862_100499374 Ga0068862_1004993742 131
242 3300009148 Ga0105243_11097633 Ga0105243_110976332 131
243 3300009553 Ga0105249_10178632 Ga0105249_101786322 131
244 3300017792 Ga0163161_11741861 Ga0163161_117418611 131
245 3300025899 Ga0207642_10009984 Ga0207642_100099842 131
246 3300025923 Ga0207681_10142506 Ga0207681_101425062 131
247 3300025926 Ga0207659_10336555 Ga0207659_103365552 131
248 3300025935 Ga0207709_10025070 Ga0207709_100250704 131
249 3300025935 Ga0207709_10192447 Ga0207709_101924472 131
250 3300025937 Ga0207669_10053151 Ga0207669_100531512 131
251 3300025972 Ga0207668_10581999 Ga0207668_105819991 131
252 3300026089 Ga0207648_10156404 Ga0207648_101564042 131
253 3300026118 Ga0207675_100127202 Ga0207675_1001272022 131
254 3300026118 Ga0207675_100535546 Ga0207675_1005355463 131
255 3300026118 Ga0207675_101839846 Ga0207675_1018398462 131
256 3300050510 nmdc:mga06r32_314438_c1 nmdc:mga06r32_314438_c1_27_422 131
257 3300026041 Ga0207639_10337536 Ga0207639_103375363 132
258 3300005468 Ga0070707_100369706 Ga0070707_1003697062 133
259 3300005549 Ga0070704_100202793 Ga0070704_1002027932 133
260 3300005578 Ga0068854_101188810 Ga0068854_1011888102 133
261 3300025922 Ga0207646_10239663 Ga0207646_102396631 133
262 3300025981 Ga0207640_10744632 Ga0207640_107446322 133
263 3300044694 Ga0466963_0115702 Ga0466963_0115702_529_969 135
264 3300003203 JGI25406J46586_10110934 JGI25406J46586_101109341 138
265 3300005985 Ga0081539_10072466 Ga0081539_100724662 138

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

86

142

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9841 76 136
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9827 76 136
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9807 75 131
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9736 76 138
6jqs-assembly1.cif.gz_A structure of transcription factor, gere 0.971 76 137
ID Description Score Start End Superfamily
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9807 75 131 1.10.10.10
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9776 76 136 1.10.10.10
6jqsA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.971 76 137 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9709 76 136 1.10.10.10
1fseC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9662 74 138 1.10.10.10
ID Description Score Start End GO Terms
AF-B9K1Q2-F1-model_v4 DNA-binding HTH domain-containing protein 1.003 76 137 GO:0003677
GO:0006355
GO:0009372
AF-A0A1Q9A6B3-F1-model_v4 HTH luxR-type domain-containing protein 1.003 76 137 GO:0003677
GO:0006355
AF-A0A353X7J6-F1-model_v4 HTH luxR-type domain-containing protein 1.002 75 138 GO:0003677
GO:0006355
GO:0009372
AF-A0A431PQQ8-F1-model_v4 LuxR family transcriptional regulator 1 75 138 GO:0003677
GO:0006355
GO:0009372
AF-A0A350XBE6-F1-model_v4 DNA-binding response regulator 0.9939 75 137 GO:0003677
GO:0006355

Feature Viewer

pLDDT pTM Quality
82.62 0.5 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map