F372663

General Info

Members Datasets Scaffolds Average Seq Length
264 139 264 285

Family's Representative Sequence

Representative Sequence 3300025925|Ga0207650_10164243|Ga0207650_101642433
Length 327
Sequence VPLAAGDDAGALGQRVGNQALNLLHALFIDQRPDGHAVFAAVALLAGGIASLVLTRDDTGRRRLAQAVAVQTPVSSIPELVPLSSEASFNGLWEDLAGILPHRSKKDMTRLRTRMLRAGINHPGAPVIYSLAEIVLPIGLAAAAYLFIQYLAVLAGAAAGFFAPGLYVERRLGQRRRQIENGLPDALDLLVVCIEAGSGIDQAILKTSDEIYFAYPALGDELRILNSEIRAGKTRIEAFKSLAARTKVDDIRALTAMLIQTDRFGTSIGQALRSHADTSRVKRRQRAEEAAQKIGVKLVFPLVLFFFPAFYVVVLGPAIITFVHAFE

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
34 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
41 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
42 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
45 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
46 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
47 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
48 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
53 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
54 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
56 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
64 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
65 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
66 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
95 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
96 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
97 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
98 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
102 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
103 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
104 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
105 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
106 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
107 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
108 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
109 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
110 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
111 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
112 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
124 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
125 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
126 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
127 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
136 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
137 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
139 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.03
Rhizosphere 96.97
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001136 3300003203 Bacteria 12492
2 JGI25406J46586_10002102 3300003203 Bacteria 9407
3 Ga0065714_10117033 3300005288 Bacteria 1396
4 Ga0065704_10092578 3300005289 Bacteria 2646
5 Ga0065712_10001441 3300005290 Bacteria 7553
6 Ga0065715_10000419 3300005293 Bacteria 16898
7 Ga0065707_10085659 3300005295 Bacteria 5988
8 Ga0065707_10091368 3300005295 Bacteria 3960
9 Ga0070676_10122165 3300005328 Bacteria 1636
10 Ga0070676_10123857 3300005328 Bacteria 1626
11 Ga0070690_100351326 3300005330 Bacteria 1070
12 Ga0070670_100011697 3300005331 Bacteria 7506
13 Ga0070670_100012030 3300005331 Bacteria 7403
14 Ga0070670_100037278 3300005331 Bacteria 4184
15 Ga0070677_10096512 3300005333 Bacteria 1295
16 Ga0068868_100017449 3300005338 Bacteria 5350
17 Ga0068868_100241118 3300005338 Bacteria 1519
18 Ga0070689_100109244 3300005340 Bacteria 2198
19 Ga0070669_100002588 3300005353 Bacteria 13082
20 Ga0070669_100013941 3300005353 Bacteria 5717
21 Ga0070669_100086041 3300005353 Bacteria 2348
22 Ga0070669_100104761 3300005353 Bacteria 2139
23 Ga0070675_100000945 3300005354 Bacteria 20698
24 Ga0070675_100005196 3300005354 Bacteria 9931
25 Ga0070675_100019781 3300005354 Bacteria 5369
26 Ga0070675_100119837 3300005354 Unclassified 2235
27 Ga0070675_100154558 3300005354 Unclassified 1969
28 Ga0070671_100118585 3300005355 Bacteria 2226
29 Ga0070673_100014845 3300005364 Bacteria 5447
30 Ga0070673_100041496 3300005364 Bacteria 3540
31 Ga0070688_100050961 3300005365 Bacteria 2581
32 Ga0070688_100162297 3300005365 Bacteria 1536
33 Ga0070667_100308063 3300005367 Unclassified 1427
34 Ga0070694_100143284 3300005444 Bacteria 1738
35 Ga0070678_100151054 3300005456 Unclassified 1871
36 Ga0070678_100182786 3300005456 Bacteria 1718
37 Ga0070662_100289780 3300005457 Bacteria 1327
38 Ga0068867_100038576 3300005459 Bacteria 3478
39 Ga0068867_100231781 3300005459 Unclassified 1493
40 Ga0070698_100010102 3300005471 Bacteria 10081
41 Ga0070698_100065494 3300005471 Bacteria 3659
42 Ga0070699_100001936 3300005518 Bacteria 18690
43 Ga0070699_100027980 3300005518 Bacteria 4862
44 Ga0070684_100313657 3300005535 Unclassified 1440
45 Ga0070672_100120842 3300005543 Bacteria 2144
46 Ga0070672_100139307 3300005543 Unclassified 2000
47 Ga0070672_100141871 3300005543 Bacteria 1982
48 Ga0070672_100201943 3300005543 Bacteria 1663
49 Ga0070672_100308284 3300005543 Bacteria 1343
50 Ga0070686_100017220 3300005544 Bacteria 4219
51 Ga0070686_100281829 3300005544 Bacteria 1226
52 Ga0070696_100020353 3300005546 Bacteria 4498
53 Ga0070665_100039400 3300005548 Bacteria 4751
54 Ga0070664_100130324 3300005564 Bacteria 2209
55 Ga0068859_100057065 3300005617 Bacteria 3933
56 Ga0068864_100280230 3300005618 Unclassified 1556
57 Ga0068866_10102246 3300005718 Unclassified 1583
58 Ga0068870_10119856 3300005840 Bacteria 1514
59 Ga0068863_100072412 3300005841 Bacteria 3260
60 Ga0068863_100178705 3300005841 Bacteria 2037
61 Ga0068863_100385043 3300005841 Bacteria 1370
62 Ga0068858_100007429 3300005842 Bacteria 10598
63 Ga0068858_100127286 3300005842 Bacteria 2386
64 Ga0068858_100159604 3300005842 Bacteria 2123
65 Ga0068862_100039610 3300005844 Bacteria 4003
66 Ga0068862_100111927 3300005844 Bacteria 2397
67 Ga0081539_10000034 3300005985 Bacteria 307597
68 Ga0097621_100004269 3300006237 Bacteria 9927
69 Ga0097621_100033367 3300006237 Bacteria 4099
70 Ga0097621_100190492 3300006237 Unclassified 1776
71 Ga0097621_100274148 3300006237 Bacteria 1483
72 Ga0068871_100003111 3300006358 Bacteria 11391
73 Ga0068871_100115624 3300006358 Bacteria 2261
74 Ga0075428_100025740 3300006844 Bacteria 6516
75 Ga0075428_100028067 3300006844 Bacteria 6225
76 Ga0075428_100478217 3300006844 Bacteria 1333
77 Ga0075430_100017338 3300006846 Bacteria 6132
78 Ga0075431_100016206 3300006847 Bacteria 7560
79 Ga0075431_100045930 3300006847 Bacteria 4503
80 Ga0075433_10021339 3300006852 Bacteria 5431
81 Ga0075433_10032642 3300006852 Bacteria 4460
82 Ga0075433_10106071 3300006852 Unclassified 2490
83 Ga0075433_10181570 3300006852 Unclassified 1873
84 Ga0075434_100014368 3300006871 Bacteria 7568
85 Ga0075434_100043142 3300006871 Bacteria 4472
86 Ga0075434_100045420 3300006871 Bacteria 4358
87 Ga0075434_100337961 3300006871 Bacteria 1526
88 Ga0075429_100100859 3300006880 Bacteria 2520
89 Ga0075429_100114831 3300006880 Bacteria 2354
90 Ga0075429_100124924 3300006880 Bacteria 2250
91 Ga0068865_100000744 3300006881 Bacteria 18267
92 Ga0097620_100057065 3300006931 Bacteria 3933
93 Ga0075435_100053410 3300007076 Unclassified 3259
94 Ga0075435_100072740 3300007076 Bacteria 2809
95 Ga0105240_10551807 3300009093 Bacteria 1275
96 Ga0111539_10001993 3300009094 Bacteria 27238
97 Ga0111539_10003435 3300009094 Bacteria 20867
98 Ga0111539_10006618 3300009094 Bacteria 14931
99 Ga0111539_10577804 3300009094 Unclassified 1309
100 Ga0105245_10005102 3300009098 Bacteria 11545
101 Ga0105245_10243615 3300009098 Bacteria 1744
102 Ga0105247_10037240 3300009101 Bacteria 2968
103 Ga0105247_10075440 3300009101 Unclassified 2116
104 Ga0114129_10003552 3300009147 Bacteria 21940
105 Ga0114129_10024560 3300009147 Bacteria 8539
106 Ga0114129_10028546 3300009147 Bacteria 7906
107 Ga0114129_10053909 3300009147 Bacteria 5640
108 Ga0114129_10132707 3300009147 Bacteria 3419
109 Ga0105243_10218871 3300009148 Unclassified 1682
110 Ga0105242_10014542 3300009176 Bacteria 6097
111 Ga0105242_10068374 3300009176 Unclassified 2939
112 Ga0105242_10303032 3300009176 Unclassified 1459
113 Ga0105248_10016204 3300009177 Bacteria 8202
114 Ga0105248_10048624 3300009177 Bacteria 4758
115 Ga0105248_10056429 3300009177 Bacteria 4406
116 Ga0105248_10057910 3300009177 Bacteria 4350
117 Ga0105248_10086089 3300009177 Bacteria 3536
118 Ga0105248_10140176 3300009177 Bacteria 2728
119 Ga0105248_10378584 3300009177 Unclassified 1593
120 Ga0105248_10402593 3300009177 Unclassified 1541
121 Ga0105248_10721604 3300009177 Unclassified 1125
122 Ga0105249_10011658 3300009553 Bacteria 7730
123 Ga0163162_10031880 3300013306 Bacteria 5230
124 Ga0163162_10068661 3300013306 Bacteria 3596
125 Ga0157375_10018730 3300013308 Bacteria 6283
126 Ga0157375_10042913 3300013308 Bacteria 4382
127 Ga0157375_10049384 3300013308 Bacteria 4122
128 Ga0163163_10206009 3300014325 Bacteria 2015
129 Ga0163163_10255859 3300014325 Bacteria 1802
130 Ga0157380_10150576 3300014326 Bacteria 2011
131 Ga0157379_10021829 3300014968 Bacteria 5672
132 Ga0157379_10183870 3300014968 Bacteria 1888
133 Ga0157376_10000773 3300014969 Bacteria 20882
134 Ga0157376_10003213 3300014969 Bacteria 11247
135 Ga0163161_10024401 3300017792 Bacteria 4272
136 Ga0207680_10008104 3300025903 Bacteria 5148
137 Ga0207680_10065217 3300025903 Bacteria 2235
138 Ga0207645_10161245 3300025907 Bacteria 1467
139 Ga0207643_10189175 3300025908 Bacteria 1249
140 Ga0207695_10402402 3300025913 Unclassified 1253
141 Ga0207681_10009648 3300025923 Bacteria 5904
142 Ga0207681_10016112 3300025923 Bacteria 4670
143 Ga0207681_10035414 3300025923 Bacteria 3289
144 Ga0207681_10093668 3300025923 Bacteria 2151
145 Ga0207650_10009904 3300025925 Bacteria 6521
146 Ga0207650_10161003 3300025925 Bacteria 1778
147 Ga0207650_10164243 3300025925 Bacteria 1761
148 Ga0207659_10000556 3300025926 Bacteria 22376
149 Ga0207659_10012511 3300025926 Bacteria 5401
150 Ga0207659_10035738 3300025926 Bacteria 3437
151 Ga0207659_10286952 3300025926 Bacteria 1347
152 Ga0207687_10003893 3300025927 Bacteria 10024
153 Ga0207644_10002961 3300025931 Bacteria 10941
154 Ga0207706_10128942 3300025933 Unclassified 2224
155 Ga0207686_10018109 3300025934 Bacteria 3981
156 Ga0207686_10023386 3300025934 Bacteria 3569
157 Ga0207670_10185063 3300025936 Unclassified 1571
158 Ga0207704_10004377 3300025938 Bacteria 6462
159 Ga0207704_10135977 3300025938 Unclassified 1711
160 Ga0207691_10016754 3300025940 Bacteria 6955
161 Ga0207691_10110618 3300025940 Bacteria 2443
162 Ga0207691_10297185 3300025940 Bacteria 1388
163 Ga0207711_10011365 3300025941 Bacteria 7398
164 Ga0207711_10011892 3300025941 Bacteria 7234
165 Ga0207711_10034644 3300025941 Bacteria 4276
166 Ga0207711_10052918 3300025941 Bacteria 3481
167 Ga0207711_10148400 3300025941 Unclassified 2114
168 Ga0207711_10166352 3300025941 Unclassified 1999
169 Ga0207711_10294962 3300025941 Unclassified 1495
170 Ga0207711_10427746 3300025941 Unclassified 1232
171 Ga0207689_10125567 3300025942 Bacteria 2111
172 Ga0207689_10418707 3300025942 Unclassified 1118
173 Ga0207679_10006802 3300025945 Bacteria 7248
174 Ga0207651_10163211 3300025960 Bacteria 1749
175 Ga0207712_10075171 3300025961 Bacteria 2441
176 Ga0207677_10133336 3300026023 Unclassified 1890
177 Ga0207703_10005115 3300026035 Bacteria 10612
178 Ga0207703_10109941 3300026035 Bacteria 2350
179 Ga0207703_10117556 3300026035 Bacteria 2278
180 Ga0207641_10002503 3300026088 Bacteria 16953
181 Ga0207641_10084941 3300026088 Unclassified 2757
182 Ga0207641_10128790 3300026088 Bacteria 2270
183 Ga0207641_10302446 3300026088 Unclassified 1511
184 Ga0207641_10507254 3300026088 Bacteria 1172
185 Ga0207648_10154861 3300026089 Unclassified 2023
186 Ga0207648_10308772 3300026089 Unclassified 1419
187 Ga0207676_10184207 3300026095 Unclassified 1831
188 Ga0207683_10060115 3300026121 Bacteria 3340
189 Ga0207683_10246998 3300026121 Unclassified 1628
190 Ga0207683_10330886 3300026121 Unclassified 1396
191 Ga0207698_10195383 3300026142 Bacteria 1807
192 Ga0207428_10011920 3300027907 Bacteria 7652
193 Ga0207428_10013880 3300027907 Bacteria 7017
194 Ga0207428_10059079 3300027907 Bacteria 3041
195 Ga0268266_10078732 3300028379 Bacteria 2869
196 Ga0268266_10099676 3300028379 Unclassified 2558
197 Ga0268266_10126246 3300028379 Bacteria 2284
198 Ga0268266_10154952 3300028379 Unclassified 2068
199 Ga0307413_10137666 3300031824 Bacteria 1682
200 Ga0307412_10297912 3300031911 Bacteria 1273
201 Ga0307414_10142793 3300032004 Unclassified 1877
202 Ga0307415_100304416 3300032126 Bacteria 1322
203 Ga0373937_0109543 3300036401 Unclassified 2568
204 Ga0373937_0157839 3300036401 Bacteria 2127
205 Ga0373925_0030079 3300037068 Bacteria 3984
206 Ga0451576_0132914 3300045051 Unclassified 2594
207 Ga0495629_0036063 3300046459 Bacteria 3493
208 Ga0495664_0038735 3300046477 Bacteria 2815
209 Ga0495621_0045532 3300046539 Bacteria 1554
210 Ga0495645_0040014 3300046543 Bacteria 3419
211 Ga0495656_0072494 3300046615 Bacteria 1533
212 Ga0495658_0169310 3300046683 Bacteria 1351
213 Ga0496104_0215276 3300048907 Bacteria 1833
214 Ga0496104_0287803 3300048907 Bacteria 1556
215 Ga0496106_0628175 3300048909 Bacteria 859
216 Ga0496110_0014712 3300048913 Bacteria 6503
217 Ga0496112_0373872 3300048915 Bacteria 1366
218 Ga0496112_0508318 3300048915 Bacteria 1140
219 Ga0496113_0018158 3300048916 Bacteria 4896
220 Ga0496114_0079375 3300048917 Bacteria 2770
221 Ga0501036_0030656 3300049572 Bacteria 4542
222 Ga0501038_0026991 3300049574 Bacteria 5111
223 Ga0501039_0038164 3300049575 Bacteria 3711
224 Ga0501041_0018949 3300049577 Bacteria 4101
225 Ga0501042_0002004 3300049578 Bacteria 12310
226 Ga0501043_0037477 3300049579 Bacteria 3814
227 Ga0501048_0026764 3300049582 Bacteria 4198
228 Ga0501048_0135675 3300049582 Bacteria 1739
229 Ga0501068_0018745 3300049584 Bacteria 4010
230 Ga0501072_0004024 3300049588 Bacteria 11120
231 Ga0501074_0148457 3300049590 Bacteria 1677
232 Ga0501075_0012763 3300049591 Bacteria 5980
233 Ga0501076_0002577 3300049592 Bacteria 12463
234 Ga0501079_0004581 3300049741 Bacteria 10257
235 Ga0501080_0054504 3300049742 Bacteria 3723
236 Ga0501081_0007026 3300049743 Bacteria 7318
237 Ga0501045_0029471 3300049824 Bacteria 3967
238 nmdc:mga05p37_121271_c1 3300050507 Bacteria 3212
239 nmdc:mga05p37_156106_c1 3300050507 Bacteria 2789
240 nmdc:mga05p37_3146_c1 3300050507 Bacteria 19198
241 nmdc:mga05p37_88165_c1 3300050507 Unclassified 3825
242 nmdc:mga09592_147561_c1 3300050508 Bacteria 2028
243 nmdc:mga09592_268598_c1 3300050508 Bacteria 1479
244 nmdc:mga09592_48108_c1 3300050508 Bacteria 3595
245 nmdc:mga06r32_15992_c1 3300050510 Bacteria 4503
246 nmdc:mga08y16_118016_c1 3300050511 Bacteria 2761
247 nmdc:mga08y16_49552_c1 3300050511 Bacteria 4396
248 nmdc:mga08y16_51334_c1 3300050511 Bacteria 4315
249 nmdc:mga08y16_528296_c1 3300050511 Unclassified 1196
250 nmdc:mga08y16_87581_c1 3300050511 Bacteria 3245
251 nmdc:mga0n895_20658_c1 3300050512 Bacteria 6146
252 nmdc:mga0n895_29775_c1 3300050512 Bacteria 5210
253 nmdc:mga0n895_94703_c1 3300050512 Unclassified 2990
254 nmdc:mga0rr50_102944_c1 3300050513 Unclassified 2246
255 nmdc:mga0rr50_163546_c1 3300050513 Unclassified 1808
256 nmdc:mga0rr50_70042_c1 3300050513 Bacteria 2671
257 nmdc:mga0a205_16761_c2 3300050515 Unclassified 3360
258 nmdc:mga0a205_39951_c1 3300050515 Bacteria 4229
259 Ga0495619_0022727 3300053085 Unclassified 4016
260 Ga0501084_0036235 3300054114 Bacteria 4121
261 Ga0501084_0279979 3300054114 Bacteria 1408
262 Ga0501082_0005885 3300060353 Bacteria 10645
263 Ga0501082_0273206 3300060353 Bacteria 1471
264 Ga0530510_0006994 3300061734 Bacteria 7859

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048909 Ga0496106_0628175 Ga0496106_0628175_26_820 210
2 3300048916 Ga0496113_0018158 Ga0496113_0018158_4063_4860 230
3 3300026089 Ga0207648_10308772 Ga0207648_103087723 233
4 3300026088 Ga0207641_10084941 Ga0207641_100849413 234
5 3300048907 Ga0496104_0287803 Ga0496104_0287803_30_812 234
6 3300005331 Ga0070670_100037278 Ga0070670_1000372781 235
7 3300005459 Ga0068867_100038576 Ga0068867_1000385763 235
8 3300005535 Ga0070684_100313657 Ga0070684_1003136572 235
9 3300009148 Ga0105243_10218871 Ga0105243_102188713 235
10 3300009176 Ga0105242_10068374 Ga0105242_100683742 235
11 3300025934 Ga0207686_10023386 Ga0207686_100233862 235
12 3300025938 Ga0207704_10135977 Ga0207704_101359772 235
13 3300028379 Ga0268266_10078732 Ga0268266_100787321 235
14 3300009177 Ga0105248_10086089 Ga0105248_100860893 242
15 3300014968 Ga0157379_10183870 Ga0157379_101838702 242
16 3300025941 Ga0207711_10052918 Ga0207711_100529182 242
17 3300005444 Ga0070694_100143284 Ga0070694_1001432842 245
18 3300005457 Ga0070662_100289780 Ga0070662_1002897801 245
19 3300025933 Ga0207706_10128942 Ga0207706_101289423 245
20 3300005842 Ga0068858_100007429 Ga0068858_10000742911 246
21 3300009101 Ga0105247_10037240 Ga0105247_100372403 246
22 3300026035 Ga0207703_10005115 Ga0207703_100051152 246
23 3300025908 Ga0207643_10189175 Ga0207643_101891752 250
24 3300005471 Ga0070698_100065494 Ga0070698_1000654943 251
25 3300005471 Ga0070698_100010102 Ga0070698_1000101024 253
26 3300005518 Ga0070699_100001936 Ga0070699_10000193619 253
27 3300005546 Ga0070696_100020353 Ga0070696_1000203533 253
28 3300005288 Ga0065714_10117033 Ga0065714_101170332 256
29 3300005290 Ga0065712_10001441 Ga0065712_100014414 256
30 3300005293 Ga0065715_10000419 Ga0065715_1000041915 256
31 3300005328 Ga0070676_10122165 Ga0070676_101221651 256
32 3300005354 Ga0070675_100154558 Ga0070675_1001545582 256
33 3300005365 Ga0070688_100050961 Ga0070688_1000509612 256
34 3300005618 Ga0068864_100280230 Ga0068864_1002802303 256
35 3300009177 Ga0105248_10016204 Ga0105248_100162047 256
36 3300025907 Ga0207645_10161245 Ga0207645_101612451 256
37 3300025926 Ga0207659_10286952 Ga0207659_102869522 256
38 3300025961 Ga0207712_10075171 Ga0207712_100751713 256
39 3300026095 Ga0207676_10184207 Ga0207676_101842071 256
40 3300028379 Ga0268266_10126246 Ga0268266_101262461 256
41 3300048913 Ga0496110_0014712 Ga0496110_0014712_1517_2434 256
42 3300048915 Ga0496112_0373872 Ga0496112_0373872_413_1330 256
43 3300006237 Ga0097621_100274148 Ga0097621_1002741482 257
44 3300026088 Ga0207641_10128790 Ga0207641_101287902 257
45 3300005841 Ga0068863_100385043 Ga0068863_1003850432 259
46 3300006237 Ga0097621_100033367 Ga0097621_1000333673 259
47 3300006358 Ga0068871_100003111 Ga0068871_1000031114 259
48 3300009177 Ga0105248_10048624 Ga0105248_100486244 259
49 3300013308 Ga0157375_10049384 Ga0157375_100493844 259
50 3300014969 Ga0157376_10003213 Ga0157376_100032135 259
51 3300025903 Ga0207680_10008104 Ga0207680_100081044 259
52 3300025913 Ga0207695_10402402 Ga0207695_104024021 259
53 3300025941 Ga0207711_10011365 Ga0207711_100113656 259
54 3300026088 Ga0207641_10507254 Ga0207641_105072542 259
55 3300026121 Ga0207683_10246998 Ga0207683_102469982 259
56 3300060353 Ga0501082_0273206 Ga0501082_0273206_134_1042 260
57 3300009093 Ga0105240_10551807 Ga0105240_105518071 261
58 3300009177 Ga0105248_10057910 Ga0105248_100579103 262
59 3300005328 Ga0070676_10123857 Ga0070676_101238572 263
60 3300006358 Ga0068871_100115624 Ga0068871_1001156242 264
61 3300009098 Ga0105245_10243615 Ga0105245_102436152 264
62 3300013308 Ga0157375_10018730 Ga0157375_100187305 264
63 3300017792 Ga0163161_10024401 Ga0163161_100244015 264
64 3300026142 Ga0207698_10195383 Ga0207698_101953832 264
65 3300049582 Ga0501048_0135675 Ga0501048_0135675_567_1445 264
66 3300054114 Ga0501084_0279979 Ga0501084_0279979_308_1186 264
67 3300005333 Ga0070677_10096512 Ga0070677_100965122 265
68 3300006847 Ga0075431_100045930 Ga0075431_1000459304 265
69 3300050510 nmdc:mga06r32_15992_c1 nmdc:mga06r32_15992_c1_2174_3094 265
70 3300050512 nmdc:mga0n895_29775_c1 nmdc:mga0n895_29775_c1_2766_3659 266
71 3300050515 nmdc:mga0a205_39951_c1 nmdc:mga0a205_39951_c1_1148_2041 266
72 3300005842 Ga0068858_100159604 Ga0068858_1001596042 268
73 3300014968 Ga0157379_10021829 Ga0157379_100218293 268
74 3300026035 Ga0207703_10117556 Ga0207703_101175563 268
75 3300048917 Ga0496114_0079375 Ga0496114_0079375_1682_2599 269
76 3300009147 Ga0114129_10024560 Ga0114129_100245605 270
77 3300009177 Ga0105248_10140176 Ga0105248_101401763 270
78 3300005330 Ga0070690_100351326 Ga0070690_1003513261 271
79 3300005353 Ga0070669_100104761 Ga0070669_1001047612 271
80 3300005354 Ga0070675_100119837 Ga0070675_1001198372 271
81 3300005367 Ga0070667_100308063 Ga0070667_1003080631 271
82 3300005543 Ga0070672_100120842 Ga0070672_1001208422 271
83 3300006237 Ga0097621_100190492 Ga0097621_1001904922 271
84 3300006852 Ga0075433_10021339 Ga0075433_100213393 271
85 3300006871 Ga0075434_100043142 Ga0075434_1000431423 271
86 3300025923 Ga0207681_10093668 Ga0207681_100936682 271
87 3300025941 Ga0207711_10166352 Ga0207711_101663522 271
88 3300025942 Ga0207689_10418707 Ga0207689_104187071 271
89 3300028379 Ga0268266_10099676 Ga0268266_100996762 271
90 3300005340 Ga0070689_100109244 Ga0070689_1001092442 272
91 3300009094 Ga0111539_10001993 Ga0111539_1000199317 272
92 3300009177 Ga0105248_10378584 Ga0105248_103785841 272
93 3300009553 Ga0105249_10011658 Ga0105249_100116584 272
94 3300026121 Ga0207683_10330886 Ga0207683_103308862 272
95 3300045051 Ga0451576_0132914 Ga0451576_0132914_1120_2016 272
96 3300048907 Ga0496104_0215276 Ga0496104_0215276_449_1345 272
97 3300050508 nmdc:mga09592_147561_c1 nmdc:mga09592_147561_c1_970_1866 272
98 3300050511 nmdc:mga08y16_87581_c1 nmdc:mga08y16_87581_c1_887_1783 272
99 3300050512 nmdc:mga0n895_94703_c1 nmdc:mga0n895_94703_c1_734_1630 272
100 3300005338 Ga0068868_100017449 Ga0068868_1000174494 273
101 3300005544 Ga0070686_100017220 Ga0070686_1000172203 273
102 3300005548 Ga0070665_100039400 Ga0070665_1000394004 273
103 3300005718 Ga0068866_10102246 Ga0068866_101022462 273
104 3300007076 Ga0075435_100053410 Ga0075435_1000534104 273
105 3300007076 Ga0075435_100072740 Ga0075435_1000727403 273
106 3300009098 Ga0105245_10005102 Ga0105245_100051027 273
107 3300009176 Ga0105242_10303032 Ga0105242_103030322 273
108 3300013306 Ga0163162_10068661 Ga0163162_100686614 273
109 3300025927 Ga0207687_10003893 Ga0207687_100038934 273
110 3300025934 Ga0207686_10018109 Ga0207686_100181093 273
111 3300025941 Ga0207711_10148400 Ga0207711_101484001 273
112 3300028379 Ga0268266_10154952 Ga0268266_101549522 273
113 3300050513 nmdc:mga0rr50_163546_c1 nmdc:mga0rr50_163546_c1_768_1667 273
114 3300005289 Ga0065704_10092578 Ga0065704_100925782 274
115 3300005295 Ga0065707_10085659 Ga0065707_100856593 274
116 3300005338 Ga0068868_100241118 Ga0068868_1002411182 274
117 3300005353 Ga0070669_100013941 Ga0070669_1000139414 274
118 3300005354 Ga0070675_100000945 Ga0070675_10000094514 274
119 3300005364 Ga0070673_100041496 Ga0070673_1000414963 274
120 3300005459 Ga0068867_100231781 Ga0068867_1002317812 274
121 3300005543 Ga0070672_100308284 Ga0070672_1003082842 274
122 3300005844 Ga0068862_100111927 Ga0068862_1001119273 274
123 3300006237 Ga0097621_100004269 Ga0097621_1000042699 274
124 3300006844 Ga0075428_100478217 Ga0075428_1004782172 274
125 3300006852 Ga0075433_10181570 Ga0075433_101815701 274
126 3300006871 Ga0075434_100337961 Ga0075434_1003379612 274
127 3300006880 Ga0075429_100114831 Ga0075429_1001148313 274
128 3300006881 Ga0068865_100000744 Ga0068865_10000074414 274
129 3300009176 Ga0105242_10014542 Ga0105242_100145422 274
130 3300009177 Ga0105248_10056429 Ga0105248_100564293 274
131 3300013306 Ga0163162_10031880 Ga0163162_100318804 274
132 3300013308 Ga0157375_10042913 Ga0157375_100429134 274
133 3300014969 Ga0157376_10000773 Ga0157376_100007737 274
134 3300025923 Ga0207681_10035414 Ga0207681_100354141 274
135 3300025925 Ga0207650_10164243 Ga0207650_101642433 274
136 3300025926 Ga0207659_10000556 Ga0207659_1000055619 274
137 3300025936 Ga0207670_10185063 Ga0207670_101850633 274
138 3300025938 Ga0207704_10004377 Ga0207704_100043772 274
139 3300025940 Ga0207691_10297185 Ga0207691_102971851 274
140 3300025941 Ga0207711_10011892 Ga0207711_100118925 274
141 3300025941 Ga0207711_10034644 Ga0207711_100346443 274
142 3300025941 Ga0207711_10294962 Ga0207711_102949622 274
143 3300026023 Ga0207677_10133336 Ga0207677_101333362 274
144 3300026089 Ga0207648_10154861 Ga0207648_101548612 274
145 3300027907 Ga0207428_10011920 Ga0207428_100119205 274
146 3300037068 Ga0373925_0030079 Ga0373925_0030079_2534_3436 274
147 3300009094 Ga0111539_10003435 Ga0111539_1000343518 275
148 3300009147 Ga0114129_10003552 Ga0114129_100035525 275
149 3300032004 Ga0307414_10142793 Ga0307414_101427932 275
150 3300036401 Ga0373937_0109543 Ga0373937_0109543_1022_1939 275
151 3300046477 Ga0495664_0038735 Ga0495664_0038735_1863_2780 275
152 3300046543 Ga0495645_0040014 Ga0495645_0040014_1304_2221 275
153 3300048915 Ga0496112_0508318 Ga0496112_0508318_83_988 275
154 3300050507 nmdc:mga05p37_3146_c1 nmdc:mga05p37_3146_c1_15229_16134 275
155 3300050513 nmdc:mga0rr50_102944_c1 nmdc:mga0rr50_102944_c1_23_940 275
156 3300050513 nmdc:mga0rr50_70042_c1 nmdc:mga0rr50_70042_c1_93_1001 275
157 3300053085 Ga0495619_0022727 Ga0495619_0022727_3009_3926 275
158 3300005353 Ga0070669_100086041 Ga0070669_1000860412 276
159 3300005354 Ga0070675_100005196 Ga0070675_1000051963 276
160 3300005365 Ga0070688_100162297 Ga0070688_1001622972 276
161 3300005543 Ga0070672_100201943 Ga0070672_1002019433 276
162 3300005844 Ga0068862_100039610 Ga0068862_1000396104 276
163 3300006852 Ga0075433_10032642 Ga0075433_100326423 276
164 3300006871 Ga0075434_100045420 Ga0075434_1000454203 276
165 3300014325 Ga0163163_10255859 Ga0163163_102558592 276
166 3300014326 Ga0157380_10150576 Ga0157380_101505762 276
167 3300025923 Ga0207681_10016112 Ga0207681_100161124 276
168 3300025926 Ga0207659_10035738 Ga0207659_100357383 276
169 3300025960 Ga0207651_10163211 Ga0207651_101632113 276
170 3300046459 Ga0495629_0036063 Ga0495629_0036063_957_1883 276
171 3300005840 Ga0068870_10119856 Ga0068870_101198562 277
172 3300036401 Ga0373937_0157839 Ga0373937_0157839_1055_1969 277
173 3300005331 Ga0070670_100011697 Ga0070670_1000116976 278
174 3300005564 Ga0070664_100130324 Ga0070664_1001303242 278
175 3300005617 Ga0068859_100057065 Ga0068859_1000570652 278
176 3300005841 Ga0068863_100178705 Ga0068863_1001787053 278
177 3300005842 Ga0068858_100127286 Ga0068858_1001272863 278
178 3300006931 Ga0097620_100057065 Ga0097620_1000570654 278
179 3300009101 Ga0105247_10075440 Ga0105247_100754403 278
180 3300009177 Ga0105248_10402593 Ga0105248_104025933 278
181 3300014325 Ga0163163_10206009 Ga0163163_102060093 278
182 3300025925 Ga0207650_10161003 Ga0207650_101610033 278
183 3300025941 Ga0207711_10427746 Ga0207711_104277462 278
184 3300025945 Ga0207679_10006802 Ga0207679_100068024 278
185 3300026035 Ga0207703_10109941 Ga0207703_101099412 278
186 3300026088 Ga0207641_10302446 Ga0207641_103024463 278
187 3300005353 Ga0070669_100002588 Ga0070669_1000025887 279
188 3300005543 Ga0070672_100139307 Ga0070672_1001393073 279
189 3300005544 Ga0070686_100281829 Ga0070686_1002818292 279
190 3300006847 Ga0075431_100016206 Ga0075431_1000162063 279
191 3300006852 Ga0075433_10106071 Ga0075433_101060714 279
192 3300006871 Ga0075434_100014368 Ga0075434_1000143685 279
193 3300006880 Ga0075429_100124924 Ga0075429_1001249243 279
194 3300009094 Ga0111539_10577804 Ga0111539_105778043 279
195 3300009147 Ga0114129_10053909 Ga0114129_100539093 279
196 3300025923 Ga0207681_10009648 Ga0207681_100096485 279
197 3300027907 Ga0207428_10059079 Ga0207428_100590793 279
198 3300031824 Ga0307413_10137666 Ga0307413_101376662 279
199 3300031911 Ga0307412_10297912 Ga0307412_102979122 279
200 3300032126 Ga0307415_100304416 Ga0307415_1003044161 279
201 3300050507 nmdc:mga05p37_88165_c1 nmdc:mga05p37_88165_c1_2710_3648 279
202 3300050508 nmdc:mga09592_268598_c1 nmdc:mga09592_268598_c1_399_1316 279
203 3300050511 nmdc:mga08y16_49552_c1 nmdc:mga08y16_49552_c1_1457_2395 279
204 3300050511 nmdc:mga08y16_528296_c1 nmdc:mga08y16_528296_c1_21_959 279
205 3300050512 nmdc:mga0n895_20658_c1 nmdc:mga0n895_20658_c1_4835_5773 279
206 3300050515 nmdc:mga0a205_16761_c2 nmdc:mga0a205_16761_c2_314_1252 279
207 3300005331 Ga0070670_100012030 Ga0070670_1000120304 280
208 3300005354 Ga0070675_100019781 Ga0070675_1000197815 280
209 3300005355 Ga0070671_100118585 Ga0070671_1001185852 280
210 3300005364 Ga0070673_100014845 Ga0070673_1000148453 280
211 3300005456 Ga0070678_100182786 Ga0070678_1001827861 280
212 3300005543 Ga0070672_100141871 Ga0070672_1001418712 280
213 3300006844 Ga0075428_100028067 Ga0075428_1000280676 280
214 3300009147 Ga0114129_10028546 Ga0114129_100285465 280
215 3300009177 Ga0105248_10721604 Ga0105248_107216042 280
216 3300025925 Ga0207650_10009904 Ga0207650_100099045 280
217 3300025926 Ga0207659_10012511 Ga0207659_100125113 280
218 3300025931 Ga0207644_10002961 Ga0207644_100029613 280
219 3300025940 Ga0207691_10016754 Ga0207691_100167544 280
220 3300026121 Ga0207683_10060115 Ga0207683_100601153 280
221 3300049572 Ga0501036_0030656 Ga0501036_0030656_390_1313 280
222 3300049574 Ga0501038_0026991 Ga0501038_0026991_3271_4194 280
223 3300049575 Ga0501039_0038164 Ga0501039_0038164_1226_2149 280
224 3300049577 Ga0501041_0018949 Ga0501041_0018949_3000_3923 280
225 3300049578 Ga0501042_0002004 Ga0501042_0002004_5291_6214 280
226 3300049579 Ga0501043_0037477 Ga0501043_0037477_158_1081 280
227 3300049582 Ga0501048_0026764 Ga0501048_0026764_2192_3115 280
228 3300049584 Ga0501068_0018745 Ga0501068_0018745_1076_1999 280
229 3300049588 Ga0501072_0004024 Ga0501072_0004024_4918_5841 280
230 3300049590 Ga0501074_0148457 Ga0501074_0148457_162_1085 280
231 3300049591 Ga0501075_0012763 Ga0501075_0012763_2505_3428 280
232 3300049592 Ga0501076_0002577 Ga0501076_0002577_4590_5513 280
233 3300049741 Ga0501079_0004581 Ga0501079_0004581_6987_7910 280
234 3300049742 Ga0501080_0054504 Ga0501080_0054504_724_1647 280
235 3300049743 Ga0501081_0007026 Ga0501081_0007026_4443_5366 280
236 3300049824 Ga0501045_0029471 Ga0501045_0029471_1996_2919 280
237 3300050507 nmdc:mga05p37_156106_c1 nmdc:mga05p37_156106_c1_1365_2306 280
238 3300054114 Ga0501084_0036235 Ga0501084_0036235_786_1709 280
239 3300060353 Ga0501082_0005885 Ga0501082_0005885_2377_3300 280
240 3300061734 Ga0530510_0006994 Ga0530510_0006994_1710_2633 280
241 3300005841 Ga0068863_100072412 Ga0068863_1000724123 281
242 3300025940 Ga0207691_10110618 Ga0207691_101106183 281
243 3300025942 Ga0207689_10125567 Ga0207689_101255672 281
244 3300026088 Ga0207641_10002503 Ga0207641_100025035 281
245 3300046683 Ga0495658_0169310 Ga0495658_0169310_46_978 281
246 3300050511 nmdc:mga08y16_118016_c1 nmdc:mga08y16_118016_c1_442_1365 281
247 3300005295 Ga0065707_10091368 Ga0065707_100913683 282
248 3300005456 Ga0070678_100151054 Ga0070678_1001510541 282
249 3300006844 Ga0075428_100025740 Ga0075428_1000257404 282
250 3300006880 Ga0075429_100100859 Ga0075429_1001008593 282
251 3300009094 Ga0111539_10006618 Ga0111539_100066183 282
252 3300009147 Ga0114129_10132707 Ga0114129_101327073 282
253 3300025903 Ga0207680_10065217 Ga0207680_100652172 282
254 3300027907 Ga0207428_10013880 Ga0207428_100138805 282
255 3300046539 Ga0495621_0045532 Ga0495621_0045532_164_1090 282
256 3300046615 Ga0495656_0072494 Ga0495656_0072494_585_1511 282
257 3300050507 nmdc:mga05p37_121271_c1 nmdc:mga05p37_121271_c1_1411_2343 282
258 3300050508 nmdc:mga09592_48108_c1 nmdc:mga09592_48108_c1_1575_2507 282
259 3300050511 nmdc:mga08y16_51334_c1 nmdc:mga08y16_51334_c1_3130_4062 282
260 3300006846 Ga0075430_100017338 Ga0075430_1000173383 283
261 3300003203 JGI25406J46586_10002102 JGI25406J46586_100021024 286
262 3300005518 Ga0070699_100027980 Ga0070699_1000279803 286
263 3300003203 JGI25406J46586_10001136 JGI25406J46586_100011366 288
264 3300005985 Ga0081539_10000034 Ga0081539_10000034100 288

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00482

T2SSF

Type II secretion system (T2SS), protein F

186

316

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
5nbg-assembly1.cif.gz_B structure of the cytoplasmic domain i of outf in the d. dadantii type ii secretion system 0.8544 158 263
3c1q-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8257 158 267
2vmb-assembly2.cif.gz_B the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.8244 158 275
2vma-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.7997 158 275
2vmb-assembly2.cif.gz_B the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.7931 158 275
ID Description Score Start End Superfamily
af_P36646_249_359_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.7821 151 260 1.20.81.30
af_P36646_249_359_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.7151 151 260 1.20.81.30
af_P87130_16_122_2.60.34.10 Mainly Beta;Sandwich;Substrate Binding Domain Of DNAk; Chain A, domain 1;Substrate Binding Domain Of DNAk; Chain A, domain 1 0.4178 103 198 2.60.34.10
af_Q9BIC4_29_113_1.10.225.10 Mainly Alpha;Orthogonal Bundle;NK-Lysin;Saposin-like 0.4149 156 220 1.10.225.10
af_Q9LYG1_15_123_1.10.10.1740 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Transmembrane protein 14-like 0.3744 103 205 1.10.10.1740
ID Description Score Start End GO Terms
AF-A0A4S0V8E1-F1-model_v4 Type II secretion system F family protein 0.9105 140 275 GO:0005886
AF-A0A1H3TKM3-F1-model_v4 Tight adherence protein C 0.9105 129 280 GO:0005886
AF-A0A529Q458-F1-model_v4 Type II secretion system F family protein 0.9082 121 257 GO:0005886
AF-A0A3C1YWP4-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.8967 88 269 GO:0005886
AF-A0A2V8I612-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.88 72 278 GO:0005886

Feature Viewer

pLDDT pTM Quality
73.97 0.59 Medium
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Predicted Structure (AlphaFold2)

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