F371507

General Info

Members Datasets Scaffolds Average Seq Length
262 182 227 166

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2899370129|2899375433
Length 193
Sequence RRSLAHEGRPGAGVPQVSARTSISRAARQARITELVSTMAIRSQTELAKLLAAEGVEVTQATLSRDLDELGAVKLRGADSGAPVYVIPEDGSPVRGVQGGTSRLSRLLAELMVSADCSGNLTVLRTPPGAAQFLASAIDRAALEEVVGSIAGDDTVAVIAREPLSGRDLADRFTALAQRSSTLDLDGKENGND

Samples

Sample ID Description Type Environment
1 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
2 2547132424 Nocardia nova SH22a Isolate Unclassified
3 2558860280 Kutzneria sp. 744 Isolate Unclassified
4 2582580736 Prauserella sp. Am3 Isolate Unclassified
5 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
6 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
7 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
8 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
9 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
10 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
11 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
12 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
13 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
14 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
15 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
16 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
17 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
18 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
19 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
20 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
21 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
22 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
23 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
24 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
25 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
26 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
27 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
28 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
29 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
30 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
31 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
32 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
33 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
34 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
36 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
37 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
38 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
39 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
40 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
41 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
42 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
43 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
44 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
45 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
48 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
49 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
50 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
51 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
52 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
53 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
54 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
55 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
56 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
57 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
58 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
59 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
61 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
62 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
63 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
64 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
67 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
68 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
69 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
87 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
88 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
89 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
90 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
91 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
92 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
93 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
94 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
95 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
98 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
101 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
102 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
103 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
104 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
105 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
106 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
107 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
108 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
109 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
110 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
111 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
112 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
113 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
114 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
115 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
116 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
117 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
118 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
119 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
120 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
121 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
122 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
123 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
124 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
125 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
126 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
127 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
128 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
129 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
130 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
131 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
132 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
133 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
134 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
135 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
136 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
137 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
138 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
139 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
140 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
141 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
142 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
143 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
144 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
145 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
146 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
147 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
148 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
149 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
150 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
151 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
152 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
153 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
154 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
155 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
156 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
157 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
158 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
159 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
160 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
161 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
162 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
163 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
164 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
165 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
166 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
167 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
168 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
169 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
170 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
171 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
172 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
173 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
174 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
175 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
176 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
177 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
178 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
179 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
180 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
181 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
182 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.64
Metatranscriptomes 0
Isolates 13.36

Biome Distribution

Category Percentage (%)
Aerial Root 0.38
Bulb 0
Endosphere 11.07
Nodule 0
Rhizoplane 10.31
Rhizosphere 52.29
Stem 0
Stem Tuber 0.38
Unclassified 25.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1015016 3300000549 Bacteria 908
2 JGI25406J46586_10001239 3300003203 Bacteria 11995
3 rootH2_10070601 3300003320 Bacteria 1130
4 Ga0055540_1000211 3300003792 Bacteria 55318
5 Ga0070666_10073071 3300005335 Bacteria 2336
6 Ga0070668_100004165 3300005347 Bacteria 10718
7 Ga0070668_100014132 3300005347 Bacteria 5967
8 Ga0070668_100357741 3300005347 Bacteria 1237
9 Ga0070671_100000123 3300005355 Bacteria 50096
10 Ga0070667_100001312 3300005367 Bacteria 22360
11 Ga0070714_100017884 3300005435 Bacteria 5748
12 Ga0070714_100344877 3300005435 Bacteria 1398
13 Ga0070714_100851981 3300005435 Bacteria 884
14 Ga0070663_100004898 3300005455 Bacteria 7905
15 Ga0070678_100148060 3300005456 Bacteria 1888
16 Ga0068853_100058869 3300005539 Bacteria 3318
17 Ga0070665_100001499 3300005548 Bacteria 27178
18 Ga0068852_100009840 3300005616 Bacteria 7113
19 Ga0068863_100004293 3300005841 Bacteria 14035
20 Ga0068863_100155724 3300005841 Bacteria 2188
21 Ga0068860_100014695 3300005843 Bacteria 7657
22 Ga0081455_10000943 3300005937 Bacteria 37170
23 Ga0081455_10336827 3300005937 Bacteria 1069
24 Ga0081539_10002043 3300005985 Bacteria 30343
25 Ga0070717_10566986 3300006028 Bacteria 1029
26 Ga0075363_100047101 3300006048 Bacteria 2289
27 Ga0075364_10007221 3300006051 Bacteria 6583
28 Ga0075367_10039662 3300006178 Bacteria 2747
29 Ga0075369_10332158 3300006186 Bacteria 712
30 Ga0075370_10127346 3300006353 Bacteria 1485
31 Ga0075431_100143546 3300006847 Bacteria 2460
32 Ga0075434_100601221 3300006871 Bacteria 1119
33 Ga0114129_11487212 3300009147 Bacteria 833
34 Ga0105243_10003603 3300009148 Bacteria 12482
35 Ga0105237_10175054 3300009545 Bacteria 2146
36 Ga0105238_10025299 3300009551 Bacteria 6050
37 Ga0105238_10989033 3300009551 Bacteria 862
38 Ga0105239_10055785 3300010375 Bacteria 4333
39 Ga0163163_11418821 3300014325 Bacteria 756
40 Ga0163163_11730697 3300014325 Bacteria 686
41 Ga0157379_10218513 3300014968 Bacteria 1726
42 Ga0157379_11156907 3300014968 Bacteria 743
43 Ga0213874_10007161 3300021377 Bacteria 2667
44 Ga0213876_10225871 3300021384 Bacteria 995
45 Ga0213875_10035249 3300021388 Bacteria 2361
46 Ga0209051_1000011 3300025303 Bacteria 610828
47 Ga0207680_10065139 3300025903 Bacteria 2236
48 Ga0207693_10795848 3300025915 Bacteria 729
49 Ga0207664_10011495 3300025929 Bacteria 6297
50 Ga0207644_10001264 3300025931 Bacteria 16262
51 Ga0207644_10596189 3300025931 Bacteria 917
52 Ga0207709_10012673 3300025935 Bacteria 4648
53 Ga0207668_10001742 3300025972 Bacteria 12748
54 Ga0207668_10010773 3300025972 Bacteria 5536
55 Ga0207658_10057863 3300025986 Bacteria 2882
56 Ga0207677_10114576 3300026023 Bacteria 2015
57 Ga0207639_10706689 3300026041 Bacteria 935
58 Ga0207678_10004886 3300026067 Bacteria 12042
59 Ga0207702_10687670 3300026078 Bacteria 1008
60 Ga0207702_11717035 3300026078 Bacteria 620
61 Ga0207641_10003429 3300026088 Bacteria 14048
62 Ga0207641_10155371 3300026088 Bacteria 2075
63 Ga0207683_10142154 3300026121 Bacteria 2163
64 Ga0207698_10143584 3300026142 Bacteria 2060
65 Ga0268266_10011873 3300028379 Bacteria 7545
66 Ga0268264_10006538 3300028381 Bacteria 9816
67 Ga0307515_10074993 3300028794 Bacteria 4515
68 Ga0307515_10528798 3300028794 Bacteria 789
69 Ga0307511_10000178 3300030521 Bacteria 62672
70 Ga0307512_10020281 3300030522 Bacteria 6024
71 Ga0316177_1138842 3300030731 Bacteria 3758
72 Ga0316176_1073819 3300030732 Bacteria 1998
73 Ga0314311_1037864 3300030733 Bacteria 1324
74 Ga0314311_1158727 3300030733 Bacteria 5556
75 Ga0314311_1159939 3300030733 Bacteria 625
76 Ga0316178_1104412 3300030735 Bacteria 679
77 Ga0316180_1168448 3300030736 Bacteria 779
78 Ga0265327_10001529 3300031251 Bacteria 28541
79 Ga0265327_10144179 3300031251 Bacteria 1111
80 Ga0307513_10196774 3300031456 Bacteria 1861
81 Ga0307513_10218571 3300031456 Bacteria 1729
82 Ga0307405_10228797 3300031731 Bacteria 1369
83 Ga0307413_10002160 3300031824 Bacteria 7904
84 Ga0307413_10136320 3300031824 Bacteria 1688
85 Ga0307518_10001157 3300031838 Bacteria 19806
86 Ga0307518_10035033 3300031838 Bacteria 3644
87 Ga0307411_10017398 3300032005 Bacteria 4095
88 Ga0307415_100045782 3300032126 Bacteria 2936
89 Ga0307507_10009773 3300033179 Bacteria 12665
90 Ga0307507_10022125 3300033179 Bacteria 7043
91 Ga0307510_10066692 3300033180 Bacteria 3631
92 Ga0373956_0007651 3300035119 Bacteria 4354
93 Ga0436364_1104274 3300037853 Bacteria 3782
94 Ga0436365_0450330 3300039437 Bacteria 10760
95 Ga0436365_1027867 3300039437 Bacteria 1789
96 Ga0436365_1426079 3300039437 Bacteria 1944
97 Ga0436363_1400489 3300039450 Bacteria 4072
98 Ga0436363_1520977 3300039450 Bacteria 898
99 Ga0451851_0840958 3300041507 Bacteria 851
100 Ga0451853_2451760 3300041512 Bacteria 3750
101 Ga0439448_0064024 3300042005 Bacteria 1219
102 Ga0439449_0171667 3300042007 Bacteria 810
103 Ga0466969_0016100 3300044656 Bacteria 3917
104 Ga0466969_0066690 3300044656 Bacteria 1737
105 Ga0466972_0001567 3300044658 Bacteria 11146
106 Ga0466972_0004475 3300044658 Bacteria 6990
107 Ga0466972_0316409 3300044658 Bacteria 729
108 Ga0466965_0000233 3300044683 Bacteria 17837
109 Ga0466965_0005508 3300044683 Bacteria 5708
110 Ga0466965_0007531 3300044683 Bacteria 5005
111 Ga0466965_0209283 3300044683 Bacteria 1037
112 Ga0466966_0003105 3300044684 Bacteria 10934
113 Ga0466966_0126585 3300044684 Bacteria 1566
114 Ga0466961_0004062 3300044693 Bacteria 9162
115 Ga0466961_0289212 3300044693 Bacteria 1002
116 Ga0466961_0301022 3300044693 Bacteria 979
117 Ga0466963_0137217 3300044694 Bacteria 1693
118 Ga0466971_0110862 3300044719 Bacteria 1266
119 Ga0466971_0243241 3300044719 Bacteria 856
120 Ga0466968_0072108 3300044735 Bacteria 1505
121 Ga0466970_0007660 3300044765 Bacteria 5414
122 Ga0466970_0012820 3300044765 Bacteria 4291
123 Ga0466970_0070907 3300044765 Bacteria 1874
124 Ga0466970_0190573 3300044765 Bacteria 1139
125 Ga0466957_0004553 3300044842 Bacteria 7742
126 Ga0466957_0010194 3300044842 Bacteria 5382
127 Ga0466957_0090902 3300044842 Bacteria 1912
128 Ga0466957_0207651 3300044842 Bacteria 1289
129 Ga0466957_0539638 3300044842 Bacteria 812
130 Ga0466960_0004494 3300044901 Bacteria 5460
131 Ga0466960_0009153 3300044901 Bacteria 4076
132 Ga0466960_0075681 3300044901 Bacteria 1684
133 Ga0466959_0097703 3300045049 Bacteria 2104
134 Ga0466959_0160162 3300045049 Bacteria 1582
135 Ga0466959_1118131 3300045049 Bacteria 524
136 Ga0466958_0000748 3300045836 Bacteria 14254
137 Ga0466958_0075985 3300045836 Bacteria 2061
138 Ga0466958_0094778 3300045836 Bacteria 1850
139 Ga0466967_0019688 3300045976 Bacteria 5434
140 Ga0466967_0025471 3300045976 Bacteria 4879
141 Ga0466967_0073277 3300045976 Bacteria 3072
142 Ga0466967_1303712 3300045976 Bacteria 723
143 Ga0495638_0001596 3300046460 Bacteria 20236
144 Ga0495653_0544929 3300046463 Bacteria 718
145 Ga0495607_0015668 3300046501 Bacteria 4907
146 Ga0495583_0160683 3300046506 Bacteria 927
147 Ga0495668_0059686 3300046616 Bacteria 2105
148 Ga0495672_0088369 3300047320 Bacteria 1708
149 Ga0495683_0002356 3300047323 Bacteria 11468
150 Ga0495686_0003794 3300047472 Bacteria 12835
151 Ga0496100_0000335 3300048903 Bacteria 22955
152 Ga0496100_0005555 3300048903 Bacteria 6804
153 Ga0496100_0945571 3300048903 Bacteria 677
154 Ga0496101_0001767 3300048904 Bacteria 12973
155 Ga0496101_0002708 3300048904 Bacteria 10873
156 Ga0496102_0000282 3300048905 Bacteria 64788
157 Ga0496102_0032948 3300048905 Bacteria 4656
158 Ga0496103_0000502 3300048906 Bacteria 32312
159 Ga0496103_0001055 3300048906 Bacteria 19218
160 Ga0496104_0017093 3300048907 Bacteria 6601
161 Ga0496106_0000199 3300048909 Bacteria 42320
162 Ga0496107_0001353 3300048910 Bacteria 15069
163 Ga0496107_0125024 3300048910 Bacteria 1896
164 Ga0496108_0000966 3300048911 Bacteria 22375
165 Ga0496109_0008976 3300048912 Bacteria 8514
166 Ga0496109_0059214 3300048912 Bacteria 3499
167 Ga0496109_1646292 3300048912 Bacteria 576
168 Ga0496110_0010603 3300048913 Bacteria 7502
169 Ga0496110_0061007 3300048913 Bacteria 3327
170 Ga0496111_0007978 3300048914 Bacteria 6981
171 Ga0496112_0134709 3300048915 Bacteria 2441
172 Ga0496112_0471103 3300048915 Bacteria 1193
173 Ga0496112_1298931 3300048915 Bacteria 643
174 Ga0496113_0034541 3300048916 Bacteria 3689
175 Ga0496113_0122804 3300048916 Bacteria 2032
176 Ga0496114_0000559 3300048917 Bacteria 27624
177 Ga0496115_0010823 3300048918 Bacteria 6822
178 Ga0496116_0000490 3300048919 Bacteria 54489
179 Ga0496116_0031324 3300048919 Bacteria 3809
180 Ga0496117_0001571 3300048920 Bacteria 32416
181 Ga0496117_0034361 3300048920 Bacteria 3820
182 Ga0496118_0000502 3300048921 Bacteria 64792
183 Ga0496118_0045956 3300048921 Bacteria 3401
184 Ga0496119_0001014 3300048922 Bacteria 35952
185 Ga0496119_0017915 3300048922 Bacteria 5302
186 Ga0496120_0017824 3300048923 Bacteria 4589
187 Ga0496121_0000433 3300048924 Bacteria 82438
188 Ga0496121_0004243 3300048924 Bacteria 19489
189 Ga0496122_0008484 3300048925 Bacteria 11066
190 Ga0496122_0009000 3300048925 Bacteria 10611
191 Ga0496123_0054573 3300048926 Bacteria 2629
192 Ga0496123_0245161 3300048926 Bacteria 887
193 Ga0496124_0000015 3300048927 Bacteria 460700
194 Ga0496124_0019482 3300048927 Bacteria 6312
195 Ga0496124_0191412 3300048927 Bacteria 1565
196 Ga0496125_0000021 3300048928 Bacteria 460688
197 Ga0496125_0090651 3300048928 Bacteria 2293
198 Ga0496126_0000015 3300048929 Bacteria 663212
199 Ga0496126_0001733 3300048929 Bacteria 32358
200 Ga0496126_0008414 3300048929 Bacteria 11132
201 Ga0501069_0090930 3300049585 Bacteria 1726
202 Ga0501044_0151235 3300049823 Bacteria 2303
203 nmdc:mga03n38_1081_c1 3300050490 Bacteria 7519
204 nmdc:mga03n38_242320_c1 3300050490 Bacteria 949
205 nmdc:mga03n38_447531_c1 3300050490 Bacteria 718
206 nmdc:mga00v17_16972_c1 3300050491 Bacteria 4112
207 nmdc:mga00v17_567528_c1 3300050491 Bacteria 733
208 nmdc:mga00v17_611981_c1 3300050491 Bacteria 702
209 nmdc:mga00v17_75152_c1 3300050491 Bacteria 2100
210 nmdc:mga04h51_163389_c1 3300050495 Bacteria 858
211 nmdc:mga07m45_46877_c1 3300050496 Bacteria 2429
212 nmdc:mga06r32_198_c1 3300050510 Bacteria 26154
213 nmdc:mga0n895_873497_c1 3300050512 Bacteria 886
214 nmdc:mga0sz30_175279_c1 3300050516 Bacteria 951
215 Ga0500610_0284091 3300053079 Bacteria 740
216 Ga0495655_0043889 3300053083 Bacteria 1154
217 Ga0500644_0145661 3300053088 Bacteria 945
218 Ga0500583_0140265 3300053092 Bacteria 1201
219 Ga0500651_0365237 3300053093 Bacteria 817
220 Ga0500556_0039980 3300053104 Bacteria 1646
221 Ga0500556_0121463 3300053104 Bacteria 1019
222 Ga0500562_117612 3300053108 Bacteria 724
223 Ga0500652_003512 3300053131 Bacteria 4757
224 Ga0500564_085018 3300053138 Bacteria 1414
225 Ga0500577_0076171 3300053142 Bacteria 1327
226 Ga0500604_0059514 3300053151 Bacteria 1197
227 Ga0500616_0064516 3300053153 Bacteria 1886

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048915 Ga0496112_0134709 Ga0496112_0134709_159_665 155
2 iso_pu_bacteria 2582580736 2583153420 155
3 iso_pu_bacteria 2866552031 2866557124 155
4 iso_pu_bacteria 2929212328 2929215654 155
5 3300003792 Ga0055540_1000211 Ga0055540_100021119 157
6 3300005335 Ga0070666_10073071 Ga0070666_100730712 157
7 3300005367 Ga0070667_100001312 Ga0070667_1000013123 157
8 3300005539 Ga0068853_100058869 Ga0068853_1000588693 157
9 3300009545 Ga0105237_10175054 Ga0105237_101750542 157
10 3300010375 Ga0105239_10055785 Ga0105239_100557855 157
11 3300025303 Ga0209051_1000011 Ga0209051_100001120 157
12 3300025903 Ga0207680_10065139 Ga0207680_100651393 157
13 3300025986 Ga0207658_10057863 Ga0207658_100578633 157
14 3300026041 Ga0207639_10706689 Ga0207639_107066892 157
15 3300030731 Ga0316177_1138842 Ga0316177_11388422 157
16 3300030732 Ga0316176_1073819 Ga0316176_10738193 157
17 3300030733 Ga0314311_1037864 Ga0314311_10378643 157
18 3300030733 Ga0314311_1158727 Ga0314311_11587273 157
19 3300030735 Ga0316178_1104412 Ga0316178_11044121 157
20 3300030736 Ga0316180_1168448 Ga0316180_11684482 157
21 3300031251 Ga0265327_10001529 Ga0265327_1000152911 157
22 3300031251 Ga0265327_10144179 Ga0265327_101441792 157
23 3300042005 Ga0439448_0064024 Ga0439448_0064024_528_1001 157
24 3300044658 Ga0466972_0316409 Ga0466972_0316409_190_663 157
25 3300044683 Ga0466965_0007531 Ga0466965_0007531_325_810 157
26 3300045976 Ga0466967_0019688 Ga0466967_0019688_2463_2936 157
27 3300048903 Ga0496100_0000335 Ga0496100_0000335_17082_17555 157
28 3300048904 Ga0496101_0001767 Ga0496101_0001767_5802_6275 157
29 3300048905 Ga0496102_0032948 Ga0496102_0032948_1333_1806 157
30 3300048906 Ga0496103_0001055 Ga0496103_0001055_2126_2599 157
31 3300048909 Ga0496106_0000199 Ga0496106_0000199_24416_24889 157
32 3300048910 Ga0496107_0001353 Ga0496107_0001353_13288_13761 157
33 3300048911 Ga0496108_0000966 Ga0496108_0000966_3982_4455 157
34 3300048912 Ga0496109_0008976 Ga0496109_0008976_3949_4422 157
35 3300048913 Ga0496110_0010603 Ga0496110_0010603_3951_4424 157
36 3300048914 Ga0496111_0007978 Ga0496111_0007978_367_840 157
37 3300048915 Ga0496112_1298931 Ga0496112_1298931_20_493 157
38 3300048916 Ga0496113_0122804 Ga0496113_0122804_1442_1915 157
39 3300048917 Ga0496114_0000559 Ga0496114_0000559_21420_21893 157
40 3300048918 Ga0496115_0010823 Ga0496115_0010823_4234_4707 157
41 3300048919 Ga0496116_0031324 Ga0496116_0031324_1853_2326 157
42 3300048920 Ga0496117_0034361 Ga0496117_0034361_3075_3548 157
43 3300048921 Ga0496118_0045956 Ga0496118_0045956_78_551 157
44 3300048922 Ga0496119_0017915 Ga0496119_0017915_4038_4511 157
45 3300048924 Ga0496121_0000433 Ga0496121_0000433_64861_65334 157
46 3300048925 Ga0496122_0008484 Ga0496122_0008484_5339_5812 157
47 3300048926 Ga0496123_0245161 Ga0496123_0245161_141_614 157
48 3300048927 Ga0496124_0000015 Ga0496124_0000015_443123_443596 157
49 3300048928 Ga0496125_0000021 Ga0496125_0000021_17105_17578 157
50 3300048929 Ga0496126_0000015 Ga0496126_0000015_17105_17578 157
51 3300053138 Ga0500564_085018 Ga0500564_085018_660_1133 157
52 iso_pu_bacteria 2842888712 2842889543 157
53 3300014968 Ga0157379_11156907 Ga0157379_111569072 158
54 3300046463 Ga0495653_0544929 Ga0495653_0544929_59_535 158
55 3300046501 Ga0495607_0015668 Ga0495607_0015668_2068_2544 158
56 3300047323 Ga0495683_0002356 Ga0495683_0002356_8786_9262 158
57 3300047472 Ga0495686_0003794 Ga0495686_0003794_11835_12311 158
58 3300048903 Ga0496100_0945571 Ga0496100_0945571_83_559 158
59 3300048916 Ga0496113_0034541 Ga0496113_0034541_44_520 158
60 3300048925 Ga0496122_0009000 Ga0496122_0009000_4229_4705 158
61 3300048926 Ga0496123_0054573 Ga0496123_0054573_743_1219 158
62 3300048927 Ga0496124_0191412 Ga0496124_0191412_143_619 158
63 3300048929 Ga0496126_0008414 Ga0496126_0008414_5234_5710 158
64 3300050491 nmdc:mga00v17_611981_c1 nmdc:mga00v17_611981_c1_69_545 158
65 iso_pu_bacteria 2751185725 2753038773 158
66 iso_pu_bacteria 2751185792 2753327285 158
67 iso_pu_bacteria 2899359706 2899368036 158
68 3300044765 Ga0466970_0007660 Ga0466970_0007660_37_528 159
69 3300045049 Ga0466959_1118131 Ga0466959_1118131_15_500 159
70 3300050491 nmdc:mga00v17_75152_c1 nmdc:mga00v17_75152_c1_1015_1494 159
71 3300053104 Ga0500556_0121463 Ga0500556_0121463_200_679 159
72 3300053153 Ga0500616_0064516 Ga0500616_0064516_89_568 159
73 iso_pu_bacteria 2751185734 2753076171 159
74 iso_pu_bacteria 8047710418 8047719494 159
75 iso_pu_bacteria 8056207758 8056210693 159
76 3300041507 Ga0451851_0840958 Ga0451851_0840958_224_706 160
77 iso_pu_bacteria 2866612099 2866618214 160
78 iso_pu_bacteria 2917736166 2917738447 160
79 iso_pu_bacteria 8003314358 8003320680 160
80 3300003203 JGI25406J46586_10001239 JGI25406J46586_100012393 161
81 3300005985 Ga0081539_10002043 Ga0081539_1000204324 161
82 3300026078 Ga0207702_11717035 Ga0207702_117170351 161
83 3300030733 Ga0314311_1159939 Ga0314311_11599391 161
84 iso_pu_bacteria 2585427649 2586060173 161
85 iso_pu_bacteria 2808606522 2809590840 161
86 iso_pu_bacteria 2870721527 2870726153 161
87 iso_pu_bacteria 2915768154 2915771860 161
88 3300005347 Ga0070668_100004165 Ga0070668_1000041658 162
89 3300005616 Ga0068852_100009840 Ga0068852_1000098404 162
90 3300009551 Ga0105238_10025299 Ga0105238_100252996 162
91 3300009551 Ga0105238_10989033 Ga0105238_109890331 162
92 3300025972 Ga0207668_10010773 Ga0207668_100107735 162
93 3300026142 Ga0207698_10143584 Ga0207698_101435841 162
94 3300030521 Ga0307511_10000178 Ga0307511_1000017858 162
95 3300032126 Ga0307415_100045782 Ga0307415_1000457821 162
96 3300033179 Ga0307507_10022125 Ga0307507_100221254 162
97 3300033180 Ga0307510_10066692 Ga0307510_100666922 162
98 3300044656 Ga0466969_0016100 Ga0466969_0016100_2749_3240 162
99 3300044684 Ga0466966_0126585 Ga0466966_0126585_51_551 162
100 3300044693 Ga0466961_0004062 Ga0466961_0004062_4232_4732 162
101 3300044719 Ga0466971_0243241 Ga0466971_0243241_46_546 162
102 3300045049 Ga0466959_0160162 Ga0466959_0160162_67_567 162
103 3300049585 Ga0501069_0090930 Ga0501069_0090930_286_774 162
104 3300050490 nmdc:mga03n38_242320_c1 nmdc:mga03n38_242320_c1_284_772 162
105 iso_pu_bacteria 2558860280 2559430558 162
106 iso_pu_bacteria 2775506925 2776370697 162
107 iso_pu_bacteria 2915358134 2915360497 162
108 3300006048 Ga0075363_100047101 Ga0075363_1000471012 163
109 3300006186 Ga0075369_10332158 Ga0075369_103321582 163
110 3300026078 Ga0207702_10687670 Ga0207702_106876702 163
111 3300032005 Ga0307411_10017398 Ga0307411_100173982 163
112 3300033179 Ga0307507_10009773 Ga0307507_100097737 163
113 3300042007 Ga0439449_0171667 Ga0439449_0171667_131_634 163
114 3300045836 Ga0466958_0094778 Ga0466958_0094778_182_679 163
115 3300050496 nmdc:mga07m45_46877_c1 nmdc:mga07m45_46877_c1_1717_2208 163
116 3300050516 nmdc:mga0sz30_175279_c1 nmdc:mga0sz30_175279_c1_205_696 163
117 3300053108 Ga0500562_117612 Ga0500562_117612_214_711 163
118 3300003320 rootH2_10070601 rootH2_100706013 164
119 3300005347 Ga0070668_100014132 Ga0070668_1000141325 164
120 3300005435 Ga0070714_100344877 Ga0070714_1003448772 164
121 3300005455 Ga0070663_100004898 Ga0070663_1000048983 164
122 3300005456 Ga0070678_100148060 Ga0070678_1001480603 164
123 3300005937 Ga0081455_10000943 Ga0081455_100009435 164
124 3300009147 Ga0114129_11487212 Ga0114129_114872122 164
125 3300021377 Ga0213874_10007161 Ga0213874_100071613 164
126 3300021384 Ga0213876_10225871 Ga0213876_102258712 164
127 3300025972 Ga0207668_10001742 Ga0207668_100017425 164
128 3300026023 Ga0207677_10114576 Ga0207677_101145763 164
129 3300026067 Ga0207678_10004886 Ga0207678_100048867 164
130 3300026121 Ga0207683_10142154 Ga0207683_101421542 164
131 3300030522 Ga0307512_10020281 Ga0307512_100202817 164
132 3300039437 Ga0436365_0450330 Ga0436365_0450330_9339_9833 164
133 3300039437 Ga0436365_1426079 Ga0436365_1426079_753_1247 164
134 3300039450 Ga0436363_1400489 Ga0436363_1400489_2481_2975 164
135 3300039450 Ga0436363_1520977 Ga0436363_1520977_237_731 164
136 3300044658 Ga0466972_0001567 Ga0466972_0001567_3985_4497 164
137 3300044658 Ga0466972_0004475 Ga0466972_0004475_2279_2773 164
138 3300044683 Ga0466965_0000233 Ga0466965_0000233_10679_11173 164
139 3300044683 Ga0466965_0209283 Ga0466965_0209283_11_511 164
140 3300044693 Ga0466961_0289212 Ga0466961_0289212_478_978 164
141 3300044694 Ga0466963_0137217 Ga0466963_0137217_247_741 164
142 3300044719 Ga0466971_0110862 Ga0466971_0110862_398_892 164
143 3300044765 Ga0466970_0012820 Ga0466970_0012820_1135_1629 164
144 3300044765 Ga0466970_0190573 Ga0466970_0190573_433_945 164
145 3300044842 Ga0466957_0010194 Ga0466957_0010194_1846_2340 164
146 3300044842 Ga0466957_0090902 Ga0466957_0090902_442_936 164
147 3300044842 Ga0466957_0207651 Ga0466957_0207651_322_816 164
148 3300044842 Ga0466957_0539638 Ga0466957_0539638_106_621 164
149 3300044901 Ga0466960_0004494 Ga0466960_0004494_2482_2976 164
150 3300044901 Ga0466960_0075681 Ga0466960_0075681_592_1086 164
151 3300045836 Ga0466958_0075985 Ga0466958_0075985_172_666 164
152 3300045976 Ga0466967_0025471 Ga0466967_0025471_173_667 164
153 3300045976 Ga0466967_1303712 Ga0466967_1303712_92_586 164
154 3300046460 Ga0495638_0001596 Ga0495638_0001596_7064_7558 164
155 3300046506 Ga0495583_0160683 Ga0495583_0160683_416_910 164
156 3300046616 Ga0495668_0059686 Ga0495668_0059686_378_872 164
157 3300049823 Ga0501044_0151235 Ga0501044_0151235_699_1193 164
158 3300053079 Ga0500610_0284091 Ga0500610_0284091_91_585 164
159 3300053092 Ga0500583_0140265 Ga0500583_0140265_630_1136 164
160 3300053104 Ga0500556_0039980 Ga0500556_0039980_478_972 164
161 3300053151 Ga0500604_0059514 Ga0500604_0059514_303_797 164
162 iso_pu_bacteria 2738543005 2739203828 164
163 iso_pu_bacteria 2791354901 2791916401 164
164 iso_pu_bacteria 2795385472 2795797753 164
165 iso_pu_bacteria 2928142448 2928147268 164
166 3300006847 Ga0075431_100143546 Ga0075431_1001435461 165
167 3300006871 Ga0075434_100601221 Ga0075434_1006012212 165
168 3300014325 Ga0163163_11418821 Ga0163163_114188212 165
169 3300021388 Ga0213875_10035249 Ga0213875_100352493 165
170 3300025915 Ga0207693_10795848 Ga0207693_107958482 165
171 3300028794 Ga0307515_10074993 Ga0307515_100749932 165
172 3300031456 Ga0307513_10218571 Ga0307513_102185712 165
173 3300031838 Ga0307518_10001157 Ga0307518_1000115712 165
174 3300037853 Ga0436364_1104274 Ga0436364_1104274_2926_3423 165
175 3300039437 Ga0436365_1027867 Ga0436365_1027867_911_1408 165
176 3300047320 Ga0495672_0088369 Ga0495672_0088369_916_1413 165
177 3300048912 Ga0496109_1646292 Ga0496109_1646292_69_566 165
178 3300048915 Ga0496112_0471103 Ga0496112_0471103_519_1034 165
179 3300050491 nmdc:mga00v17_567528_c1 nmdc:mga00v17_567528_c1_82_579 165
180 3300050510 nmdc:mga06r32_198_c1 nmdc:mga06r32_198_c1_4421_4939 165
181 3300050512 nmdc:mga0n895_873497_c1 nmdc:mga0n895_873497_c1_305_802 165
182 3300053088 Ga0500644_0145661 Ga0500644_0145661_116_634 165
183 3300053142 Ga0500577_0076171 Ga0500577_0076171_431_949 165
184 iso_pu_bacteria 2738543011 2739239383 165
185 iso_pu_bacteria 2795385470 2795787383 165
186 iso_pu_bacteria 2889300758 2889301982 165
187 iso_pu_bacteria 2919713450 2919718914 165
188 iso_pu_bacteria 2939743619 2939748197 165
189 3300031731 Ga0307405_10228797 Ga0307405_102287972 166
190 3300045976 Ga0466967_0073277 Ga0466967_0073277_1937_2440 166
191 3300053131 Ga0500652_003512 Ga0500652_003512_3335_3838 166
192 iso_pu_bacteria 2523231044 2523383289 166
193 3300005841 Ga0068863_100004293 Ga0068863_1000042939 167
194 3300005937 Ga0081455_10336827 Ga0081455_103368272 167
195 3300014325 Ga0163163_11730697 Ga0163163_117306971 167
196 3300014968 Ga0157379_10218513 Ga0157379_102185132 167
197 3300026088 Ga0207641_10003429 Ga0207641_100034299 167
198 3300028794 Ga0307515_10528798 Ga0307515_105287982 167
199 3300031456 Ga0307513_10196774 Ga0307513_101967742 167
200 3300031824 Ga0307413_10136320 Ga0307413_101363202 167
201 3300035119 Ga0373956_0007651 Ga0373956_0007651_1216_1737 167
202 3300044901 Ga0466960_0009153 Ga0466960_0009153_3199_3714 167
203 3300048903 Ga0496100_0005555 Ga0496100_0005555_5497_6018 167
204 3300048904 Ga0496101_0002708 Ga0496101_0002708_4831_5352 167
205 3300048905 Ga0496102_0000282 Ga0496102_0000282_58062_58583 167
206 3300048906 Ga0496103_0000502 Ga0496103_0000502_25601_26122 167
207 3300048907 Ga0496104_0017093 Ga0496104_0017093_1532_2053 167
208 3300048910 Ga0496107_0125024 Ga0496107_0125024_436_957 167
209 3300048912 Ga0496109_0059214 Ga0496109_0059214_1345_1866 167
210 3300048913 Ga0496110_0061007 Ga0496110_0061007_1882_2403 167
211 3300048919 Ga0496116_0000490 Ga0496116_0000490_6251_6772 167
212 3300048920 Ga0496117_0001571 Ga0496117_0001571_6205_6726 167
213 3300048921 Ga0496118_0000502 Ga0496118_0000502_6206_6727 167
214 3300048922 Ga0496119_0001014 Ga0496119_0001014_6144_6665 167
215 3300048923 Ga0496120_0017824 Ga0496120_0017824_3118_3639 167
216 3300048924 Ga0496121_0004243 Ga0496121_0004243_14828_15349 167
217 3300048927 Ga0496124_0019482 Ga0496124_0019482_4872_5393 167
218 3300048928 Ga0496125_0090651 Ga0496125_0090651_1331_1852 167
219 3300048929 Ga0496126_0001733 Ga0496126_0001733_6206_6727 167
220 3300005355 Ga0070671_100000123 Ga0070671_10000012345 168
221 3300005548 Ga0070665_100001499 Ga0070665_1000014994 168
222 3300005841 Ga0068863_100155724 Ga0068863_1001557242 168
223 3300005843 Ga0068860_100014695 Ga0068860_1000146956 168
224 3300025931 Ga0207644_10001264 Ga0207644_100012642 168
225 3300026088 Ga0207641_10155371 Ga0207641_101553712 168
226 3300028379 Ga0268266_10011873 Ga0268266_100118736 168
227 3300028381 Ga0268264_10006538 Ga0268264_100065382 168
228 iso_pu_bacteria 2899370129 2899375433 168
229 3300005435 Ga0070714_100017884 Ga0070714_1000178844 169
230 3300005435 Ga0070714_100851981 Ga0070714_1008519811 169
231 3300006028 Ga0070717_10566986 Ga0070717_105669862 169
232 3300006051 Ga0075364_10007221 Ga0075364_100072215 169
233 3300006178 Ga0075367_10039662 Ga0075367_100396622 169
234 3300006353 Ga0075370_10127346 Ga0075370_101273462 169
235 3300009148 Ga0105243_10003603 Ga0105243_1000360310 169
236 3300025929 Ga0207664_10011495 Ga0207664_100114955 169
237 3300025935 Ga0207709_10012673 Ga0207709_100126733 169
238 3300031824 Ga0307413_10002160 Ga0307413_100021602 169
239 3300031838 Ga0307518_10035033 Ga0307518_100350333 169
240 3300041512 Ga0451853_2451760 Ga0451853_2451760_2108_2650 169
241 3300044656 Ga0466969_0066690 Ga0466969_0066690_300_809 169
242 3300044683 Ga0466965_0005508 Ga0466965_0005508_4347_4856 169
243 3300044684 Ga0466966_0003105 Ga0466966_0003105_745_1254 169
244 3300044693 Ga0466961_0301022 Ga0466961_0301022_174_683 169
245 3300044735 Ga0466968_0072108 Ga0466968_0072108_691_1200 169
246 3300044765 Ga0466970_0070907 Ga0466970_0070907_578_1087 169
247 3300044842 Ga0466957_0004553 Ga0466957_0004553_5290_5799 169
248 3300045049 Ga0466959_0097703 Ga0466959_0097703_1111_1620 169
249 3300045836 Ga0466958_0000748 Ga0466958_0000748_6012_6521 169
250 3300050490 nmdc:mga03n38_1081_c1 nmdc:mga03n38_1081_c1_6748_7266 169
251 3300050490 nmdc:mga03n38_447531_c1 nmdc:mga03n38_447531_c1_104_613 169
252 3300050491 nmdc:mga00v17_16972_c1 nmdc:mga00v17_16972_c1_1370_1888 169
253 3300050495 nmdc:mga04h51_163389_c1 nmdc:mga04h51_163389_c1_21_539 169
254 3300053083 Ga0495655_0043889 Ga0495655_0043889_318_845 169
255 3300053093 Ga0500651_0365237 Ga0500651_0365237_76_594 169
256 iso_pu_bacteria 2547132424 2548694806 169
257 iso_pu_bacteria 2744054611 2744954611 169
258 3300025931 Ga0207644_10596189 Ga0207644_105961891 170
259 iso_pu_bacteria 2974315732 2974317794 170
260 iso_pu_bacteria 2984523437 2984526004 170
261 3300005347 Ga0070668_100357741 Ga0070668_1003577412 173
262 3300000549 LJQas_1015016 LJQas_10150162 179

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01316

Arg_repressor

Arginine repressor, DNA binding domain

23

93

0.97

PF02863

Arg_repressor_C

Arginine repressor, C-terminal domain

108

175

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zfz-assembly1.cif.gz_A crystal structure of the c-terminal domain hexamer of argr from mycobacterium tuberculosis in complex with arginine 1 95 168
6wjo-assembly1.cif.gz_B crystal structure of wild-type arginine repressor from the pathogenic bacterium corynebacterium pseudotuberculosis bound to tyrosine 0.9861 94 165
5jvo-assembly1.cif.gz_A crystal structure of the arginine repressor from the pathogenic bacterium corynebacterium pseudotuberculosis 0.9675 91 168
6wjp-assembly1.cif.gz_A-2 crystal structure of arginine repressor p115q mutant from the pathogenic bacterium corynebacterium pseudotuberculosis bound to arginine 0.9603 91 168
2zfz-assembly1.cif.gz_A crystal structure of the c-terminal domain hexamer of argr from mycobacterium tuberculosis in complex with arginine 0.9489 95 168
ID Description Score Start End Superfamily
2zfzB00 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.996 93 168 3.30.1360.40
2zfzB00 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.9583 93 168 3.30.1360.40
3ereD01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9552 17 78 1.10.10.10
3lajA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9408 17 81 1.10.10.10
2p5lH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9349 17 79 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7V3J118-F1-model_v4 Arginine repressor 1.005 95 168 GO:0003677
GO:0003700
GO:0005737
GO:0006526
GO:0034618
GO:0051259
GO:1900079
AF-A0A655JA00-F1-model_v4 Arginine repressor 0.9848 105 168 GO:0003677
GO:0003700
GO:0005737
GO:0006526
GO:0034618
GO:0051259
GO:1900079
AF-A0A7V3J118-F1-model_v4 Arginine repressor 0.9655 95 168 GO:0003677
GO:0003700
GO:0005737
GO:0006526
GO:0034618
GO:0051259
GO:1900079
AF-A0A828UJS8-F1-model_v4 deleted 0.9576 92 170
AF-A0A655JA00-F1-model_v4 Arginine repressor 0.9553 105 168 GO:0003677
GO:0003700
GO:0005737
GO:0006526
GO:0034618
GO:0051259
GO:1900079

Feature Viewer

pLDDT pTM Quality
82.18 0.53 Medium
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Predicted Structure (AlphaFold2)

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