F368809

General Info

Members Datasets Scaffolds Average Seq Length
259 167 258 154

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10047514|Ga0157370_100475143
Length 154
Sequence MEKQTLDQTDLEILKLLQQNAQLTNKEIGNQLHKSTATIHERIRQLKEAGYIKKIVAILDRKKVNRNLIAFSHVLLHNHAAETLKNFQKEVTRFPEVMECFQMTGTFDFILRVATVDMDAYHTFYSNLAALPNISTVQSFFVLSETKSDTAYPL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738543023 Pedobacter sp. OK628 Isolate Unclassified
3 2914759650 Rhizosphaericola mali Isolate Rhizosphere
4 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
5 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
6 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
7 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
8 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
9 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
15 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
28 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
50 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
54 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
55 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
56 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
57 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
58 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
61 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
74 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
78 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
79 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
80 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
85 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
86 3300041441 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_1 MetaG Metagenome Rhizoplane
87 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
88 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
89 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
90 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
91 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
92 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
93 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
94 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
95 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
96 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
97 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
98 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
101 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
102 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
105 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
106 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
107 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
108 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
109 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
110 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
111 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
112 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
113 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
114 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
115 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
116 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
117 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
118 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
119 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
120 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
121 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
122 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
123 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
124 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
125 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
126 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
127 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
128 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
129 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
130 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
131 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
132 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
133 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
140 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
143 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
144 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
145 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
149 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
150 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
151 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
152 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
153 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
154 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
155 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
156 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
157 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
158 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
159 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
160 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
161 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
162 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
163 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
164 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
165 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
166 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
167 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.23
Metatranscriptomes 0
Isolates 0.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.53
Nodule 0
Rhizoplane 1.54
Rhizosphere 70.66
Stem 0
Stem Tuber 0
Unclassified 9.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2719742 2162886007 Bacteria 2042
2 JGI24740J21852_10017652 3300001979 Bacteria 2546
3 JGI25162J39368_1000173 3300002737 Bacteria 69607
4 JGI25154J39366_1005793 3300002738 Bacteria 1909
5 JGI25152J39213_1001542 3300002773 Bacteria 9782
6 JGI25150J39212_1000229 3300002774 Bacteria 30305
7 JGI25151J46595_10000638 3300003187 Bacteria 30172
8 JGI25153J46596_10000385 3300003215 Bacteria 30172
9 rootH1_10033719 3300003316 Bacteria 3762
10 rootH1_10033719 3300003323 Bacteria 3802
11 rootL2_10053060 3300003322 Bacteria 3683
12 rootL2_10120140 3300003322 Bacteria 7893
13 rootH1_10365334 3300003323 Unclassified 1613
14 Ga0055536_1000007 3300003781 Bacteria 345133
15 Ga0055530_10001141 3300003791 Bacteria 20680
16 Ga0065165_1008767 3300005262 Bacteria 4661
17 Ga0065714_10125538 3300005288 Bacteria 1300
18 Ga0065714_10128201 3300005288 Bacteria 1257
19 Ga0065714_10185728 3300005288 Bacteria 946
20 Ga0065714_10344031 3300005288 Unclassified 642
21 Ga0065704_10001030 3300005289 Bacteria 14589
22 Ga0065704_10090002 3300005289 Bacteria 2809
23 Ga0065704_10129322 3300005289 Unclassified 1650
24 Ga0070663_100017301 3300005455 Unclassified 4703
25 Ga0070665_101764409 3300005548 Bacteria 626
26 Ga0068855_100152639 3300005563 Bacteria 2626
27 Ga0068852_100683213 3300005616 Unclassified 1036
28 Ga0068858_101742125 3300005842 Bacteria 615
29 Ga0068860_100000138 3300005843 Bacteria 119368
30 Ga0068862_100326667 3300005844 Bacteria 1417
31 Ga0075366_10188183 3300006195 Unclassified 1254
32 Ga0075366_10314855 3300006195 Bacteria 958
33 Ga0075435_100731475 3300007076 Unclassified 860
34 Ga0105244_10000043 3300009036 Bacteria 150556
35 Ga0105240_10000054 3300009093 Bacteria 225529
36 Ga0105240_10000424 3300009093 Bacteria 78228
37 Ga0105240_10003673 3300009093 Bacteria 23739
38 Ga0105240_10139375 3300009093 Unclassified 2901
39 Ga0105240_10303215 3300009093 Bacteria 1827
40 Ga0105240_10552472 3300009093 Bacteria 1274
41 Ga0105243_10000004 3300009148 Bacteria 601266
42 Ga0105241_10012682 3300009174 Bacteria 6183
43 Ga0105237_10000087 3300009545 Bacteria 124934
44 Ga0105237_10005672 3300009545 Bacteria 14044
45 Ga0105237_10014174 3300009545 Bacteria 8345
46 Ga0105239_10000038 3300010375 Bacteria 205230
47 Ga0105239_10000717 3300010375 Bacteria 47009
48 Ga0105239_10033148 3300010375 Bacteria 5673
49 Ga0105239_10495442 3300010375 Bacteria 1389
50 Ga0157373_10059539 3300013100 Bacteria 2706
51 Ga0157373_10075370 3300013100 Bacteria 2380
52 Ga0157371_10000051 3300013102 Bacteria 180272
53 Ga0157371_10011800 3300013102 Bacteria 6709
54 Ga0157371_10014331 3300013102 Bacteria 5986
55 Ga0157370_10016255 3300013104 Bacteria 7539
56 Ga0157370_10029577 3300013104 Bacteria 5373
57 Ga0157370_10047514 3300013104 Bacteria 4114
58 Ga0157370_10147710 3300013104 Bacteria 2188
59 Ga0157369_10000005 3300013105 Bacteria 470816
60 Ga0157369_10000007 3300013105 Bacteria 402562
61 Ga0157369_10000221 3300013105 Bacteria 78608
62 Ga0157369_10002353 3300013105 Bacteria 22741
63 Ga0157374_10692462 3300013296 Bacteria 1032
64 Ga0157378_10543386 3300013297 Bacteria 1166
65 Ga0163162_10000054 3300013306 Bacteria 110125
66 Ga0163162_10000246 3300013306 Bacteria 48982
67 Ga0163162_10003447 3300013306 Bacteria 15104
68 Ga0163162_10011256 3300013306 Bacteria 8722
69 Ga0157372_10000011 3300013307 Bacteria 277202
70 Ga0157372_10637828 3300013307 Bacteria 1241
71 Ga0157372_11824210 3300013307 Bacteria 699
72 Ga0157375_10054987 3300013308 Bacteria 3922
73 Ga0157380_11762143 3300014326 Bacteria 678
74 Ga0182008_10000326 3300014497 Bacteria 37611
75 Ga0182008_10000423 3300014497 Bacteria 32646
76 Ga0157376_12001100 3300014969 Bacteria 617
77 Ga0182006_1000233 3300015261 Bacteria 52709
78 Ga0182006_1000375 3300015261 Bacteria 37085
79 Ga0182006_1074169 3300015261 Bacteria 1254
80 Ga0182006_1086357 3300015261 Bacteria 1136
81 Ga0182007_10000007 3300015262 Bacteria 376596
82 Ga0163161_10000097 3300017792 Bacteria 84842
83 Ga0163161_10000130 3300017792 Bacteria 70533
84 Ga0163161_10000153 3300017792 Bacteria 63614
85 Ga0163161_10000246 3300017792 Bacteria 48503
86 Ga0163161_10000681 3300017792 Bacteria 27156
87 Ga0163161_10332726 3300017792 Bacteria 1203
88 Ga0209436_108080 3300025208 Unclassified 2133
89 Ga0207427_106606 3300025231 Bacteria 1450
90 Ga0209437_100299 3300025233 Bacteria 69659
91 Ga0209258_126617 3300025242 Bacteria 561
92 Ga0207425_1000004 3300025245 Bacteria 1092421
93 Ga0209646_1001246 3300025246 Bacteria 7225
94 Ga0209026_1005946 3300025250 Bacteria 3125
95 Ga0209129_1000048 3300025258 Bacteria 270192
96 Ga0209233_1001899 3300025261 Bacteria 8017
97 Ga0209233_1020576 3300025261 Bacteria 1727
98 Ga0209676_1000058 3300025292 Bacteria 345185
99 Ga0209025_1000009 3300025294 Bacteria 1092561
100 Ga0209758_1000010 3300025297 Bacteria 1092782
101 Ga0209050_1000054 3300025298 Bacteria 345186
102 Ga0207426_1028126 3300025302 Unclassified 1866
103 Ga0207654_10036887 3300025911 Bacteria 2734
104 Ga0207695_10000043 3300025913 Bacteria 444585
105 Ga0207695_10000055 3300025913 Bacteria 382776
106 Ga0207695_10000546 3300025913 Bacteria 78237
107 Ga0207695_10166050 3300025913 Bacteria 2136
108 Ga0207695_10247473 3300025913 Bacteria 1682
109 Ga0207695_10923165 3300025913 Bacteria 752
110 Ga0207671_10000096 3300025914 Bacteria 135750
111 Ga0207671_10000584 3300025914 Bacteria 48796
112 Ga0207671_10008715 3300025914 Bacteria 8556
113 Ga0207671_10049330 3300025914 Bacteria 3116
114 Ga0207671_10277951 3300025914 Bacteria 1320
115 Ga0207709_10000010 3300025935 Bacteria 601305
116 Ga0207667_10135623 3300025949 Bacteria 2535
117 Ga0207667_10266121 3300025949 Bacteria 1753
118 Ga0207658_11117362 3300025986 Bacteria 720
119 Ga0207677_11529959 3300026023 Bacteria 617
120 Ga0268264_10000109 3300028381 Bacteria 208477
121 Ga0307513_10237219 3300031456 Unclassified 1632
122 Ga0307509_10040535 3300031507 Bacteria 5065
123 Ga0307405_10000037 3300031731 Bacteria 91045
124 Ga0307407_10000014 3300031903 Bacteria 156064
125 Ga0307409_100017885 3300031995 Bacteria 4742
126 Ga0307416_100000007 3300032002 Bacteria 433284
127 Ga0307414_10000676 3300032004 Bacteria 17495
128 Ga0307414_10000765 3300032004 Bacteria 16475
129 Ga0307414_10110188 3300032004 Bacteria 2093
130 Ga0307507_10000071 3300033179 Bacteria 158391
131 Ga0307510_10001657 3300033180 Bacteria 24689
132 Ga0307510_10010992 3300033180 Bacteria 10762
133 Ga0307510_10301903 3300033180 Bacteria 1063
134 Ga0307510_10319493 3300033180 Bacteria 1010
135 Ga0395899_0000001 3300037312 Bacteria 1750322
136 Ga0395899_0000765 3300037312 Bacteria 31770
137 Ga0395900_0272781 3300037418 Bacteria 1686
138 Ga0395900_0391814 3300037418 Bacteria 1355
139 Ga0395898_0516382 3300037466 Bacteria 1136
140 Ga0395901_0083845 3300038443 Bacteria 3332
141 Ga0395901_0562793 3300038443 Bacteria 1154
142 Ga0439436_0044957 3300041404 Unclassified 1257
143 Ga0439439_0028296 3300041406 Unclassified 1419
144 Ga0451787_433612 3300041441 Bacteria 761
145 Ga0451791_1091617 3300041451 Bacteria 961
146 Ga0451797_0088508 3300041453 Unclassified 561
147 Ga0451806_648764 3300041462 Bacteria 721
148 Ga0451849_1393352 3300041505 Bacteria 1721
149 Ga0451853_0480370 3300041512 Unclassified 986
150 Ga0439457_024607 3300042014 Unclassified 1332
151 Ga0439462_0070972 3300042015 Bacteria 946
152 Ga0466969_0003277 3300044656 Bacteria 8603
153 Ga0466972_0000036 3300044658 Bacteria 146007
154 Ga0466972_0000980 3300044658 Bacteria 13745
155 Ga0466965_0257533 3300044683 Unclassified 937
156 Ga0466966_0000028 3300044684 Bacteria 105667
157 Ga0466964_0276884 3300044706 Unclassified 837
158 Ga0466968_0082205 3300044735 Bacteria 1417
159 Ga0466968_0357494 3300044735 Unclassified 710
160 Ga0466970_0037384 3300044765 Unclassified 2573
161 Ga0466957_0000484 3300044842 Bacteria 19807
162 Ga0466957_0028850 3300044842 Bacteria 3306
163 Ga0466960_0286031 3300044901 Unclassified 925
164 Ga0466959_0000047 3300045049 Bacteria 86901
165 Ga0495629_0261951 3300046459 Unclassified 1188
166 Ga0495638_0039931 3300046460 Bacteria 2976
167 Ga0495638_0228936 3300046460 Bacteria 1035
168 Ga0495650_0000003 3300046471 Bacteria 900730
169 Ga0495585_0000405 3300046492 Bacteria 41777
170 Ga0495585_0005813 3300046492 Bacteria 7736
171 Ga0495607_0347541 3300046501 Unclassified 685
172 Ga0495583_0213268 3300046506 Bacteria 782
173 Ga0495606_0000642 3300046507 Bacteria 54856
174 Ga0495606_0021844 3300046507 Bacteria 4681
175 Ga0495606_0315840 3300046507 Unclassified 841
176 Ga0495610_0000025 3300046512 Bacteria 301208
177 Ga0495610_0001047 3300046512 Bacteria 25418
178 Ga0495610_0002662 3300046512 Bacteria 14731
179 Ga0495616_0032807 3300046513 Bacteria 2710
180 Ga0495616_0068586 3300046513 Bacteria 1721
181 Ga0495628_0038795 3300046516 Unclassified 3811
182 Ga0495628_0369448 3300046516 Bacteria 1052
183 Ga0495637_0012275 3300046520 Bacteria 4101
184 Ga0495637_0084783 3300046520 Unclassified 1258
185 Ga0495637_0100008 3300046520 Bacteria 1134
186 Ga0495648_0000056 3300046524 Bacteria 158489
187 Ga0495648_0000662 3300046524 Bacteria 36792
188 Ga0495609_0001113 3300046538 Bacteria 18658
189 Ga0495609_0011010 3300046538 Bacteria 4320
190 Ga0495645_0851763 3300046543 Bacteria 544
191 Ga0495622_0046549 3300046557 Bacteria 2015
192 Ga0495622_0106012 3300046557 Bacteria 1287
193 Ga0495633_0000592 3300046558 Bacteria 35047
194 Ga0495633_0060411 3300046558 Bacteria 1776
195 Ga0495668_0000153 3300046616 Bacteria 104580
196 Ga0495668_0006040 3300046616 Bacteria 8027
197 Ga0495625_0003575 3300046660 Bacteria 15318
198 Ga0495625_0037219 3300046660 Bacteria 3572
199 Ga0495625_0038912 3300046660 Bacteria 3476
200 Ga0495625_0154373 3300046660 Bacteria 1541
201 Ga0495635_0652541 3300046663 Bacteria 685
202 Ga0495661_0000114 3300046665 Bacteria 95935
203 Ga0495661_0022609 3300046665 Bacteria 4091
204 Ga0495658_0006339 3300046683 Bacteria 5812
205 Ga0495658_0047744 3300046683 Bacteria 2412
206 Ga0495671_0365685 3300046692 Bacteria 691
207 Ga0495649_0000003 3300046694 Bacteria 880817
208 Ga0495600_0094389 3300046809 Bacteria 1951
209 Ga0495687_028372 3300047443 Bacteria 2604
210 Ga0495681_0265649 3300047470 Bacteria 673
211 Ga0495686_0000034 3300047472 Bacteria 325038
212 Ga0495686_0129866 3300047472 Bacteria 1495
213 Ga0495593_0134934 3300047673 Bacteria 1252
214 Ga0495614_0014177 3300048089 Bacteria 3493
215 Ga0496116_0003498 3300048919 Bacteria 15460
216 Ga0496117_0019724 3300048920 Bacteria 5525
217 Ga0496122_0002011 3300048925 Bacteria 30241
218 Ga0496122_0045329 3300048925 Bacteria 3419
219 Ga0496123_0001485 3300048926 Bacteria 32574
220 Ga0496124_0254252 3300048927 Bacteria 1297
221 Ga0496125_0352884 3300048928 Bacteria 878
222 Ga0495678_013746 3300049459 Bacteria 3789
223 Ga0501037_0136677 3300049573 Unclassified 1756
224 Ga0501047_0036912 3300049581 Bacteria 4723
225 Ga0501047_0112046 3300049581 Bacteria 2611
226 Ga0501209_225675 3300049656 Unclassified 581
227 Ga0501219_000217 3300049703 Bacteria 10881
228 Ga0501225_0000499 3300049705 Bacteria 12206
229 Ga0501241_016582 3300049758 Bacteria 1344
230 Ga0501035_0892943 3300049822 Bacteria 704
231 Ga0501044_0024403 3300049823 Bacteria 6419
232 Ga0501284_00083 3300050005 Bacteria 23357
233 nmdc:mga0k408_732416_c1 3300050493 Bacteria 578
234 nmdc:mga0rr50_708362_c1 3300050513 Unclassified 859
235 Ga0500578_0000009 3300053086 Bacteria 219807
236 Ga0500578_0168564 3300053086 Bacteria 1355
237 Ga0500643_027124 3300053087 Bacteria 1784
238 Ga0500646_0026512 3300053090 Unclassified 1572
239 Ga0500646_0113015 3300053090 Bacteria 865
240 Ga0500583_0000056 3300053092 Bacteria 72293
241 Ga0500583_0000370 3300053092 Bacteria 14765
242 Ga0500562_028008 3300053108 Bacteria 1480
243 Ga0500608_022629 3300053122 Bacteria 2915
244 Ga0500608_041525 3300053122 Bacteria 2207
245 Ga0500618_000633 3300053125 Bacteria 21213
246 Ga0500652_004444 3300053131 Bacteria 4345
247 Ga0500658_0080730 3300053134 Unclassified 1390
248 Ga0500658_0351337 3300053134 Bacteria 677
249 Ga0500561_0007323 3300053137 Bacteria 2144
250 Ga0500568_0119325 3300053139 Bacteria 983
251 Ga0500568_0268904 3300053139 Unclassified 620
252 Ga0500588_0024220 3300053146 Bacteria 1673
253 Ga0500616_0012581 3300053153 Bacteria 4949
254 Ga0500619_063078 3300053154 Bacteria 1223
255 Ga0500622_0002142 3300053156 Bacteria 14668
256 Ga0500622_0048783 3300053156 Bacteria 2184
257 Ga0500624_000954 3300053157 Bacteria 5965
258 Ga0500636_0094240 3300053177 Bacteria 1711

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053108 Ga0500562_028008 Ga0500562_028008_670_1158 129
2 3300005563 Ga0068855_100152639 Ga0068855_1001526392 150
3 3300005616 Ga0068852_100683213 Ga0068852_1006832131 150
4 3300025949 Ga0207667_10135623 Ga0207667_101356233 150
5 3300046507 Ga0495606_0315840 Ga0495606_0315840_270_761 150
6 3300053087 Ga0500643_027124 Ga0500643_027124_1230_1691 150
7 3300053122 Ga0500608_022629 Ga0500608_022629_1857_2318 150
8 3300053139 Ga0500568_0119325 Ga0500568_0119325_366_827 150
9 3300053153 Ga0500616_0012581 Ga0500616_0012581_2766_3227 150
10 3300003323 rootH1_10365334 rootH1_103653341 151
11 3300005262 Ga0065165_1008767 Ga0065165_10087673 151
12 3300005289 Ga0065704_10090002 Ga0065704_100900022 151
13 3300009093 Ga0105240_10552472 Ga0105240_105524722 151
14 3300013104 Ga0157370_10047514 Ga0157370_100475143 151
15 3300013105 Ga0157369_10002353 Ga0157369_100023532 151
16 3300013306 Ga0163162_10011256 Ga0163162_100112566 151
17 3300014969 Ga0157376_12001100 Ga0157376_120011001 151
18 3300025208 Ga0209436_108080 Ga0209436_1080802 151
19 3300025231 Ga0207427_106606 Ga0207427_1066062 151
20 3300025261 Ga0209233_1001899 Ga0209233_10018993 151
21 3300025302 Ga0207426_1028126 Ga0207426_10281261 151
22 3300025913 Ga0207695_10247473 Ga0207695_102474731 151
23 3300033179 Ga0307507_10000071 Ga0307507_10000071119 151
24 3300033180 Ga0307510_10301903 Ga0307510_103019032 151
25 3300037418 Ga0395900_0391814 Ga0395900_0391814_881_1345 151
26 3300037466 Ga0395898_0516382 Ga0395898_0516382_522_980 151
27 3300038443 Ga0395901_0083845 Ga0395901_0083845_1083_1547 151
28 3300038443 Ga0395901_0562793 Ga0395901_0562793_397_855 151
29 3300046492 Ga0495585_0000405 Ga0495585_0000405_27674_28138 151
30 3300046506 Ga0495583_0213268 Ga0495583_0213268_85_549 151
31 3300046516 Ga0495628_0369448 Ga0495628_0369448_65_529 151
32 3300046524 Ga0495648_0000056 Ga0495648_0000056_39756_40220 151
33 3300046538 Ga0495609_0001113 Ga0495609_0001113_364_828 151
34 3300046557 Ga0495622_0106012 Ga0495622_0106012_770_1234 151
35 3300046558 Ga0495633_0000592 Ga0495633_0000592_22030_22494 151
36 3300046660 Ga0495625_0003575 Ga0495625_0003575_8359_8823 151
37 3300046683 Ga0495658_0006339 Ga0495658_0006339_3522_3986 151
38 3300047472 Ga0495686_0129866 Ga0495686_0129866_635_1099 151
39 3300053157 Ga0500624_000954 Ga0500624_000954_548_1012 151
40 2162886007 SwRhRL2b_contig_2719742 SwRhRL2b_0055.00004830 152
41 3300001979 JGI24740J21852_10017652 JGI24740J21852_100176522 152
42 3300002737 JGI25162J39368_1000173 JGI25162J39368_100017311 152
43 3300002738 JGI25154J39366_1005793 JGI25154J39366_10057932 152
44 3300002773 JGI25152J39213_1001542 JGI25152J39213_10015427 152
45 3300002774 JGI25150J39212_1000229 JGI25150J39212_10002297 152
46 3300003187 JGI25151J46595_10000638 JGI25151J46595_100006387 152
47 3300003215 JGI25153J46596_10000385 JGI25153J46596_1000038523 152
48 3300003316 rootH1_10033719 rootH1_100337193 152
49 3300003322 rootL2_10053060 rootL2_100530603 152
50 3300003322 rootL2_10120140 rootL2_101201401 152
51 3300003781 Ga0055536_1000007 Ga0055536_1000007109 152
52 3300003791 Ga0055530_10001141 Ga0055530_100011417 152
53 3300005288 Ga0065714_10125538 Ga0065714_101255382 152
54 3300005288 Ga0065714_10128201 Ga0065714_101282011 152
55 3300005288 Ga0065714_10185728 Ga0065714_101857282 152
56 3300005288 Ga0065714_10344031 Ga0065714_103440311 152
57 3300005289 Ga0065704_10001030 Ga0065704_100010307 152
58 3300005289 Ga0065704_10129322 Ga0065704_101293222 152
59 3300005455 Ga0070663_100017301 Ga0070663_1000173013 152
60 3300005548 Ga0070665_101764409 Ga0070665_1017644092 152
61 3300005842 Ga0068858_101742125 Ga0068858_1017421251 152
62 3300005843 Ga0068860_100000138 Ga0068860_10000013875 152
63 3300005844 Ga0068862_100326667 Ga0068862_1003266672 152
64 3300006195 Ga0075366_10188183 Ga0075366_101881832 152
65 3300006195 Ga0075366_10314855 Ga0075366_103148552 152
66 3300007076 Ga0075435_100731475 Ga0075435_1007314751 152
67 3300009036 Ga0105244_10000043 Ga0105244_10000043112 152
68 3300009093 Ga0105240_10000054 Ga0105240_1000005489 152
69 3300009093 Ga0105240_10000424 Ga0105240_1000042421 152
70 3300009093 Ga0105240_10003673 Ga0105240_100036734 152
71 3300009093 Ga0105240_10139375 Ga0105240_101393753 152
72 3300009093 Ga0105240_10303215 Ga0105240_103032152 152
73 3300009148 Ga0105243_10000004 Ga0105243_10000004320 152
74 3300009174 Ga0105241_10012682 Ga0105241_100126825 152
75 3300009545 Ga0105237_10000087 Ga0105237_1000008746 152
76 3300009545 Ga0105237_10005672 Ga0105237_100056724 152
77 3300009545 Ga0105237_10014174 Ga0105237_100141746 152
78 3300010375 Ga0105239_10000038 Ga0105239_1000003878 152
79 3300010375 Ga0105239_10000717 Ga0105239_100007174 152
80 3300010375 Ga0105239_10033148 Ga0105239_100331484 152
81 3300010375 Ga0105239_10495442 Ga0105239_104954422 152
82 3300013100 Ga0157373_10059539 Ga0157373_100595394 152
83 3300013100 Ga0157373_10075370 Ga0157373_100753703 152
84 3300013102 Ga0157371_10000051 Ga0157371_10000051102 152
85 3300013102 Ga0157371_10011800 Ga0157371_100118002 152
86 3300013102 Ga0157371_10014331 Ga0157371_100143313 152
87 3300013104 Ga0157370_10016255 Ga0157370_100162553 152
88 3300013104 Ga0157370_10029577 Ga0157370_100295774 152
89 3300013104 Ga0157370_10147710 Ga0157370_101477101 152
90 3300013105 Ga0157369_10000005 Ga0157369_1000000579 152
91 3300013105 Ga0157369_10000007 Ga0157369_10000007197 152
92 3300013105 Ga0157369_10000221 Ga0157369_1000022138 152
93 3300013296 Ga0157374_10692462 Ga0157374_106924621 152
94 3300013297 Ga0157378_10543386 Ga0157378_105433862 152
95 3300013306 Ga0163162_10000054 Ga0163162_1000005474 152
96 3300013306 Ga0163162_10000246 Ga0163162_1000024614 152
97 3300013306 Ga0163162_10003447 Ga0163162_1000344710 152
98 3300013307 Ga0157372_10000011 Ga0157372_1000001127 152
99 3300013307 Ga0157372_10637828 Ga0157372_106378282 152
100 3300013307 Ga0157372_11824210 Ga0157372_118242101 152
101 3300013308 Ga0157375_10054987 Ga0157375_100549872 152
102 3300014326 Ga0157380_11762143 Ga0157380_117621431 152
103 3300014497 Ga0182008_10000326 Ga0182008_1000032612 152
104 3300014497 Ga0182008_10000423 Ga0182008_1000042317 152
105 3300015261 Ga0182006_1000233 Ga0182006_100023313 152
106 3300015261 Ga0182006_1000375 Ga0182006_10003756 152
107 3300015261 Ga0182006_1074169 Ga0182006_10741692 152
108 3300015261 Ga0182006_1086357 Ga0182006_10863571 152
109 3300015262 Ga0182007_10000007 Ga0182007_1000000785 152
110 3300017792 Ga0163161_10000097 Ga0163161_1000009751 152
111 3300017792 Ga0163161_10000130 Ga0163161_1000013015 152
112 3300017792 Ga0163161_10000153 Ga0163161_1000015316 152
113 3300017792 Ga0163161_10000246 Ga0163161_100002465 152
114 3300017792 Ga0163161_10000681 Ga0163161_1000068118 152
115 3300017792 Ga0163161_10332726 Ga0163161_103327262 152
116 3300025233 Ga0209437_100299 Ga0209437_10029910 152
117 3300025242 Ga0209258_126617 Ga0209258_1266171 152
118 3300025245 Ga0207425_1000004 Ga0207425_1000004141 152
119 3300025246 Ga0209646_1001246 Ga0209646_10012462 152
120 3300025250 Ga0209026_1005946 Ga0209026_10059462 152
121 3300025258 Ga0209129_1000048 Ga0209129_1000048141 152
122 3300025261 Ga0209233_1020576 Ga0209233_10205762 152
123 3300025292 Ga0209676_1000058 Ga0209676_1000058105 152
124 3300025294 Ga0209025_1000009 Ga0209025_1000009141 152
125 3300025297 Ga0209758_1000010 Ga0209758_1000010142 152
126 3300025298 Ga0209050_1000054 Ga0209050_1000054105 152
127 3300025911 Ga0207654_10036887 Ga0207654_100368872 152
128 3300025913 Ga0207695_10000043 Ga0207695_10000043210 152
129 3300025913 Ga0207695_10000055 Ga0207695_10000055113 152
130 3300025913 Ga0207695_10000546 Ga0207695_1000054621 152
131 3300025913 Ga0207695_10166050 Ga0207695_101660501 152
132 3300025913 Ga0207695_10923165 Ga0207695_109231651 152
133 3300025914 Ga0207671_10000096 Ga0207671_1000009651 152
134 3300025914 Ga0207671_10000584 Ga0207671_1000058423 152
135 3300025914 Ga0207671_10008715 Ga0207671_100087155 152
136 3300025914 Ga0207671_10049330 Ga0207671_100493302 152
137 3300025914 Ga0207671_10277951 Ga0207671_102779512 152
138 3300025935 Ga0207709_10000010 Ga0207709_10000010322 152
139 3300025949 Ga0207667_10266121 Ga0207667_102661212 152
140 3300025986 Ga0207658_11117362 Ga0207658_111173622 152
141 3300026023 Ga0207677_11529959 Ga0207677_115299591 152
142 3300028381 Ga0268264_10000109 Ga0268264_1000010930 152
143 3300031456 Ga0307513_10237219 Ga0307513_102372192 152
144 3300031507 Ga0307509_10040535 Ga0307509_100405352 152
145 3300031731 Ga0307405_10000037 Ga0307405_1000003716 152
146 3300031903 Ga0307407_10000014 Ga0307407_1000001494 152
147 3300031995 Ga0307409_100017885 Ga0307409_1000178854 152
148 3300032002 Ga0307416_100000007 Ga0307416_100000007154 152
149 3300032004 Ga0307414_10000676 Ga0307414_100006764 152
150 3300032004 Ga0307414_10000765 Ga0307414_100007654 152
151 3300032004 Ga0307414_10110188 Ga0307414_101101882 152
152 3300033180 Ga0307510_10001657 Ga0307510_100016573 152
153 3300033180 Ga0307510_10010992 Ga0307510_100109923 152
154 3300033180 Ga0307510_10319493 Ga0307510_103194931 152
155 3300037312 Ga0395899_0000001 Ga0395899_0000001_100184_100645 152
156 3300037312 Ga0395899_0000765 Ga0395899_0000765_13324_13785 152
157 3300037418 Ga0395900_0272781 Ga0395900_0272781_192_653 152
158 3300041404 Ga0439436_0044957 Ga0439436_0044957_428_895 152
159 3300041406 Ga0439439_0028296 Ga0439439_0028296_511_978 152
160 3300041441 Ga0451787_433612 Ga0451787_433612_173_640 152
161 3300041451 Ga0451791_1091617 Ga0451791_1091617_396_863 152
162 3300041453 Ga0451797_0088508 Ga0451797_0088508_83_550 152
163 3300041462 Ga0451806_648764 Ga0451806_648764_242_709 152
164 3300041505 Ga0451849_1393352 Ga0451849_1393352_674_1141 152
165 3300041512 Ga0451853_0480370 Ga0451853_0480370_465_932 152
166 3300042014 Ga0439457_024607 Ga0439457_024607_191_658 152
167 3300042015 Ga0439462_0070972 Ga0439462_0070972_122_589 152
168 3300044656 Ga0466969_0003277 Ga0466969_0003277_7522_7989 152
169 3300044658 Ga0466972_0000036 Ga0466972_0000036_17467_17934 152
170 3300044658 Ga0466972_0000980 Ga0466972_0000980_8205_8666 152
171 3300044683 Ga0466965_0257533 Ga0466965_0257533_447_908 152
172 3300044684 Ga0466966_0000028 Ga0466966_0000028_98103_98570 152
173 3300044706 Ga0466964_0276884 Ga0466964_0276884_120_581 152
174 3300044735 Ga0466968_0082205 Ga0466968_0082205_785_1252 152
175 3300044735 Ga0466968_0357494 Ga0466968_0357494_182_643 152
176 3300044765 Ga0466970_0037384 Ga0466970_0037384_312_773 152
177 3300044842 Ga0466957_0000484 Ga0466957_0000484_12303_12770 152
178 3300044842 Ga0466957_0028850 Ga0466957_0028850_362_829 152
179 3300044901 Ga0466960_0286031 Ga0466960_0286031_418_885 152
180 3300045049 Ga0466959_0000047 Ga0466959_0000047_45747_46214 152
181 3300046459 Ga0495629_0261951 Ga0495629_0261951_276_737 152
182 3300046460 Ga0495638_0039931 Ga0495638_0039931_1268_1735 152
183 3300046460 Ga0495638_0228936 Ga0495638_0228936_211_678 152
184 3300046471 Ga0495650_0000003 Ga0495650_0000003_288990_289451 152
185 3300046492 Ga0495585_0005813 Ga0495585_0005813_532_993 152
186 3300046501 Ga0495607_0347541 Ga0495607_0347541_185_649 152
187 3300046507 Ga0495606_0000642 Ga0495606_0000642_48237_48698 152
188 3300046507 Ga0495606_0021844 Ga0495606_0021844_1437_1904 152
189 3300046512 Ga0495610_0000025 Ga0495610_0000025_173492_173959 152
190 3300046512 Ga0495610_0001047 Ga0495610_0001047_31_498 152
191 3300046512 Ga0495610_0002662 Ga0495610_0002662_1476_1937 152
192 3300046513 Ga0495616_0032807 Ga0495616_0032807_46_507 152
193 3300046513 Ga0495616_0068586 Ga0495616_0068586_772_1233 152
194 3300046516 Ga0495628_0038795 Ga0495628_0038795_835_1296 152
195 3300046520 Ga0495637_0012275 Ga0495637_0012275_104_571 152
196 3300046520 Ga0495637_0084783 Ga0495637_0084783_483_944 152
197 3300046520 Ga0495637_0100008 Ga0495637_0100008_145_612 152
198 3300046524 Ga0495648_0000662 Ga0495648_0000662_20888_21349 152
199 3300046538 Ga0495609_0011010 Ga0495609_0011010_100_561 152
200 3300046543 Ga0495645_0851763 Ga0495645_0851763_50_511 152
201 3300046557 Ga0495622_0046549 Ga0495622_0046549_342_803 152
202 3300046558 Ga0495633_0060411 Ga0495633_0060411_760_1221 152
203 3300046616 Ga0495668_0000153 Ga0495668_0000153_10945_11406 152
204 3300046616 Ga0495668_0006040 Ga0495668_0006040_1560_2027 152
205 3300046660 Ga0495625_0037219 Ga0495625_0037219_2724_3185 152
206 3300046660 Ga0495625_0038912 Ga0495625_0038912_2453_2914 152
207 3300046660 Ga0495625_0154373 Ga0495625_0154373_765_1226 152
208 3300046663 Ga0495635_0652541 Ga0495635_0652541_63_524 152
209 3300046665 Ga0495661_0000114 Ga0495661_0000114_9708_10169 152
210 3300046665 Ga0495661_0022609 Ga0495661_0022609_1786_2247 152
211 3300046683 Ga0495658_0047744 Ga0495658_0047744_1401_1862 152
212 3300046692 Ga0495671_0365685 Ga0495671_0365685_12_473 152
213 3300046694 Ga0495649_0000003 Ga0495649_0000003_405994_406455 152
214 3300046809 Ga0495600_0094389 Ga0495600_0094389_924_1385 152
215 3300047443 Ga0495687_028372 Ga0495687_028372_475_936 152
216 3300047470 Ga0495681_0265649 Ga0495681_0265649_144_605 152
217 3300047472 Ga0495686_0000034 Ga0495686_0000034_283659_284120 152
218 3300047673 Ga0495593_0134934 Ga0495593_0134934_171_632 152
219 3300048089 Ga0495614_0014177 Ga0495614_0014177_1874_2335 152
220 3300048919 Ga0496116_0003498 Ga0496116_0003498_13523_13981 152
221 3300048920 Ga0496117_0019724 Ga0496117_0019724_3431_3889 152
222 3300048925 Ga0496122_0002011 Ga0496122_0002011_11037_11501 152
223 3300048925 Ga0496122_0045329 Ga0496122_0045329_2245_2703 152
224 3300048926 Ga0496123_0001485 Ga0496123_0001485_10610_11074 152
225 3300048927 Ga0496124_0254252 Ga0496124_0254252_807_1271 152
226 3300048928 Ga0496125_0352884 Ga0496125_0352884_81_539 152
227 3300049459 Ga0495678_013746 Ga0495678_013746_3282_3743 152
228 3300049573 Ga0501037_0136677 Ga0501037_0136677_852_1319 152
229 3300049581 Ga0501047_0036912 Ga0501047_0036912_1353_1820 152
230 3300049581 Ga0501047_0112046 Ga0501047_0112046_1827_2294 152
231 3300049656 Ga0501209_225675 Ga0501209_225675_74_541 152
232 3300049703 Ga0501219_000217 Ga0501219_000217_638_1105 152
233 3300049705 Ga0501225_0000499 Ga0501225_0000499_6197_6664 152
234 3300049758 Ga0501241_016582 Ga0501241_016582_117_584 152
235 3300049822 Ga0501035_0892943 Ga0501035_0892943_98_565 152
236 3300049823 Ga0501044_0024403 Ga0501044_0024403_4426_4893 152
237 3300050005 Ga0501284_00083 Ga0501284_00083_1302_1769 152
238 3300050493 nmdc:mga0k408_732416_c1 nmdc:mga0k408_732416_c1_93_560 152
239 3300050513 nmdc:mga0rr50_708362_c1 nmdc:mga0rr50_708362_c1_74_541 152
240 3300053086 Ga0500578_0000009 Ga0500578_0000009_55804_56271 152
241 3300053086 Ga0500578_0168564 Ga0500578_0168564_624_1091 152
242 3300053090 Ga0500646_0026512 Ga0500646_0026512_509_976 152
243 3300053090 Ga0500646_0113015 Ga0500646_0113015_247_714 152
244 3300053092 Ga0500583_0000056 Ga0500583_0000056_55343_55810 152
245 3300053092 Ga0500583_0000370 Ga0500583_0000370_11292_11759 152
246 3300053122 Ga0500608_041525 Ga0500608_041525_1552_2013 152
247 3300053125 Ga0500618_000633 Ga0500618_000633_13469_13930 152
248 3300053131 Ga0500652_004444 Ga0500652_004444_2040_2507 152
249 3300053134 Ga0500658_0080730 Ga0500658_0080730_890_1357 152
250 3300053134 Ga0500658_0351337 Ga0500658_0351337_68_535 152
251 3300053137 Ga0500561_0007323 Ga0500561_0007323_336_797 152
252 3300053139 Ga0500568_0268904 Ga0500568_0268904_59_520 152
253 3300053146 Ga0500588_0024220 Ga0500588_0024220_79_546 152
254 3300053154 Ga0500619_063078 Ga0500619_063078_247_714 152
255 3300053156 Ga0500622_0002142 Ga0500622_0002142_13315_13785 152
256 3300053156 Ga0500622_0048783 Ga0500622_0048783_651_1118 152
257 3300053177 Ga0500636_0094240 Ga0500636_0094240_535_1002 152
258 iso_pu_bacteria 2738543023 2739304742 152
259 iso_pu_bacteria 2914759650 2914762206 152

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13412

HTH_24

Winged helix-turn-helix DNA-binding

6

53

0.99

PF13404

HTH_AsnC-type

AsnC-type helix-turn-helix domain

6

47

0.98

PF09339

HTH_IclR

IclR helix-turn-helix domain

11

55

0.96

PF01022

HTH_5

Bacterial regulatory protein, arsR family

7

54

0.95

PF01037

AsnC_trans_reg

Lrp/AsnC ligand binding domain

73

145

0.93

PF01047

MarR

MarR family

6

64

0.92

PF08279

HTH_11

HTH domain

9

63

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qww-assembly3.cif.gz_F crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.9536 3 47
5hsm-assembly1.cif.gz_A-2 crystal structure of mycobacterium tuberculosis marr family protein rv2887 0.95 3 47
2qww-assembly2.cif.gz_C crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.9499 3 47
2qww-assembly1.cif.gz_B crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.947 3 47
2qww-assembly2.cif.gz_D crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.946 3 47
ID Description Score Start End Superfamily
2ia0A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9798 2 50 1.10.10.10
2cfxF01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9762 1 49 1.10.10.10
2cfxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9736 1 49 1.10.10.10
2cfxE01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9731 1 49 1.10.10.10
2cfxH01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9724 1 49 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A351NTB9-F1-model_v4 Lrp/AsnC family transcriptional regulator 0.5671 3 143 GO:0005829
GO:0043200
GO:0043565
AF-A0A017H7Z4-F1-model_v4 PutR, transcriptional activator of PutA and PutP 0.5651 4 141 GO:0005829
GO:0043200
GO:0043565
AF-A0A3A9JND5-F1-model_v4 Lrp/AsnC family transcriptional regulator 0.5633 2 141 GO:0005829
GO:0043200
GO:0043565
AF-A0A7W8GL12-F1-model_v4 deleted 0.5616 3 141
AF-A0A2S5TRW8-F1-model_v4 deleted 0.5604 3 143

Feature Viewer

pLDDT pTM Quality
83.96 0.58 Medium
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Predicted Structure (AlphaFold2)

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