F368345

General Info

Members Datasets Scaffolds Average Seq Length
258 193 243 511

Family's Representative Sequence

Representative Sequence 3300046558|Ga0495633_0001896|Ga0495633_0001896_6061_7716
Length 551
Sequence MAVALQRTAAGPLSCWRPGFGRIAAIVSRNAIEWEIEMNGAHSLVKTLLAAGVDTCFANPGTSEMHFVAALDQIPGMHCVLGLQENVVTGMADGYYRIARKPACTLLHCGPGLANGLANLHNARRARSGIVNIVGDQATYHRPYDAPLTADTDGLARTVSAWVHTSTQSAELGQDAAMAVRAASTFPGQVASLILPANVSWDEGGVVAQPLPVPAPPAVDGHAVDEAARVLRNAGGKALILLSGAAVFAPAQALVWRMAQATGAAVLAEYGASHLQRGRGRMALERVPYGMEAAIKTLARFEHIILVGAKPPVGFFAYPGLPSTQYPDSAQLHVLTRPEQEPLTALQALVDALQAPQAAIPDAGPRPDAATGAPTPEGLARTVAALMPEGAIISDESISYGRGFYPHTHAAPAHDWLHLAGGAIGDGMPVATGAAIGAGKQRRVINLQADGSAMYSLQSLWTQAREQLPVTTIVLNNSRYNILIGEYKGVGATPGATAMQMLDLGNPSIGWVKLAEGMGVEAARASSMEECARLMQASFAQPGPFLIELII

Samples

Sample ID Description Type Environment
1 2596583598 Ralstonia sp. UNCCL144 Isolate Unclassified
2 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
3 2643221683 Variovorax sp. Root473 Isolate Unclassified
4 2856314179 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Isolate Nodule
5 2885318864 Mesorhizobium sp. M4B.F.Ca.ET.017.02.2.1 Isolate Nodule
6 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
7 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
8 2906414383 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Isolate Nodule
9 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
10 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
11 2958071322 Mesorhizobium sp. M6A.T.Ce.TU.016.01.1.1 Isolate Nodule
12 2961170736 Mesorhizobium sp. M4B.F.Ca.ET.200.01.1.1 Isolate Nodule
13 2970503327 Mesorhizobium sp. M4B.F.Ca.ET.190.01.1.1 Isolate Nodule
14 2977864932 Mesorhizobium tamadayense DSM 28320 Isolate Nodule
15 2979808191 Mesorhizobium sp. M4B.F.Ca.ET.172.01.1.1 Isolate Nodule
16 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
20 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
21 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
22 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
23 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
24 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
25 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
26 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
27 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
28 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
31 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
32 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
33 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
34 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
35 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
36 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
37 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
38 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
39 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
40 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
41 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
42 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
43 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
44 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
45 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
48 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
49 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
50 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
51 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
52 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
53 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
55 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
56 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
57 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
58 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
60 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
62 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
65 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
66 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
67 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
70 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
71 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
72 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
73 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
74 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
75 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
104 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
105 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
106 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
107 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
108 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
109 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
110 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
111 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
112 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
113 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
114 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
115 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
116 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
117 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
118 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
119 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
120 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
121 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
122 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
123 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
124 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
125 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
126 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
127 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
128 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
129 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
130 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
131 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
132 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
133 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
134 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
135 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
136 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
137 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
138 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
139 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
140 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
141 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
142 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
143 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
144 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
145 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
146 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
147 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
148 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
149 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
150 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
151 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
152 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
153 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
154 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
155 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
156 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
157 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
158 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
159 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
160 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
161 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
162 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
163 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
164 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
165 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
166 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
167 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
168 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
169 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
170 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
171 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
172 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
173 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
174 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
175 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
176 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
177 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
178 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
179 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
180 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
181 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
182 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
183 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
184 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
185 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
186 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
187 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
188 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
189 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
190 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
191 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
192 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
193 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.8
Metatranscriptomes 0
Isolates 6.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.59
Nodule 3.49
Rhizoplane 1.94
Rhizosphere 80.62
Stem 0
Stem Tuber 0
Unclassified 7.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10000110 3300003203 Bacteria 36191
2 rootH1_10142626 3300003316 Bacteria 4419
3 rootH1_10142626 3300003323 Unclassified 1855
4 rootL2_10044723 3300003322 Bacteria 17438
5 Ga0055529_1000742 3300003763 Bacteria 21119
6 Ga0055540_1004888 3300003792 Bacteria 5860
7 Ga0055531_10000415 3300003794 Bacteria 40766
8 Ga0058692_1000132 3300003856 Bacteria 47060
9 Ga0070676_10028964 3300005328 Bacteria 3147
10 Ga0068869_100001178 3300005334 Bacteria 15353
11 Ga0070666_10013972 3300005335 Bacteria 5105
12 Ga0068868_100012935 3300005338 Bacteria 6106
13 Ga0070660_100084417 3300005339 Bacteria 2496
14 Ga0070692_10021993 3300005345 Bacteria 3110
15 Ga0070668_100172673 3300005347 Bacteria 1761
16 Ga0070669_100029108 3300005353 Bacteria 3980
17 Ga0070671_100004854 3300005355 Bacteria 10691
18 Ga0070671_100028743 3300005355 Bacteria 4581
19 Ga0070671_100067601 3300005355 Bacteria 2980
20 Ga0070659_100004633 3300005366 Bacteria 9824
21 Ga0070667_100032474 3300005367 Bacteria 4354
22 Ga0070678_100107941 3300005456 Bacteria 2172
23 Ga0070662_100000938 3300005457 Bacteria 17847
24 Ga0068867_100029331 3300005459 Bacteria 3964
25 Ga0068867_100110688 3300005459 Bacteria 2110
26 Ga0070679_100019299 3300005530 Bacteria 6625
27 Ga0070684_100023782 3300005535 Bacteria 5131
28 Ga0068853_100006710 3300005539 Bacteria 9171
29 Ga0068853_100118930 3300005539 Bacteria 2355
30 Ga0070672_100012991 3300005543 Bacteria 5869
31 Ga0070672_100059228 3300005543 Bacteria 3013
32 Ga0070693_100018855 3300005547 Bacteria 3610
33 Ga0070693_100034703 3300005547 Bacteria 2792
34 Ga0068855_100008870 3300005563 Bacteria 12156
35 Ga0068855_100057853 3300005563 Bacteria 4543
36 Ga0068857_100127607 3300005577 Bacteria 2292
37 Ga0068854_100042065 3300005578 Bacteria 3232
38 Ga0068856_100016475 3300005614 Bacteria 7154
39 Ga0068852_100000997 3300005616 Bacteria 18683
40 Ga0068852_100025095 3300005616 Bacteria 4825
41 Ga0068864_100044064 3300005618 Bacteria 3822
42 Ga0068861_100005982 3300005719 Bacteria 8266
43 Ga0068851_10000492 3300005834 Bacteria 17268
44 Ga0068851_10013610 3300005834 Bacteria 3852
45 Ga0068851_10040948 3300005834 Bacteria 2329
46 Ga0068858_100003650 3300005842 Bacteria 15230
47 Ga0068858_100030414 3300005842 Bacteria 5013
48 Ga0081539_10000118 3300005985 Bacteria 184562
49 Ga0075364_10050724 3300006051 Bacteria 2709
50 Ga0097621_100161098 3300006237 Bacteria 1929
51 Ga0068871_100031030 3300006358 Bacteria 4211
52 Ga0068865_100042583 3300006881 Bacteria 3097
53 Ga0105251_10060263 3300009011 Bacteria 1787
54 Ga0105240_10013312 3300009093 Bacteria 11306
55 Ga0111539_10003810 3300009094 Bacteria 19845
56 Ga0105245_10008894 3300009098 Bacteria 8765
57 Ga0105245_10122130 3300009098 Bacteria 2434
58 Ga0114129_10108901 3300009147 Bacteria 3824
59 Ga0105242_10039621 3300009176 Bacteria 3793
60 Ga0105242_10234155 3300009176 Bacteria 1647
61 Ga0105248_10002320 3300009177 Bacteria 21092
62 Ga0105248_10013027 3300009177 Bacteria 9166
63 Ga0105248_10048279 3300009177 Bacteria 4775
64 Ga0105248_10105626 3300009177 Bacteria 3175
65 Ga0105238_10011720 3300009551 Bacteria 8837
66 Ga0105238_10100710 3300009551 Bacteria 2872
67 Ga0105238_10138140 3300009551 Bacteria 2415
68 Ga0105239_10054189 3300010375 Bacteria 4398
69 Ga0157373_10022216 3300013100 Bacteria 4603
70 Ga0157374_10023231 3300013296 Bacteria 5542
71 Ga0163162_10011546 3300013306 Bacteria 8616
72 Ga0157372_10016895 3300013307 Bacteria 7834
73 Ga0157372_10038755 3300013307 Bacteria 5259
74 Ga0157375_10001936 3300013308 Bacteria 17825
75 Ga0157375_10101593 3300013308 Bacteria 2959
76 Ga0157380_10044473 3300014326 Bacteria 3481
77 Ga0157377_10000601 3300014745 Bacteria 14943
78 Ga0157379_10012937 3300014968 Bacteria 7300
79 Ga0157379_10019334 3300014968 Bacteria 6016
80 Ga0157376_10029935 3300014969 Bacteria 4339
81 Ga0157376_10081144 3300014969 Bacteria 2784
82 Ga0163161_10008729 3300017792 Bacteria 7005
83 Ga0209455_1000601 3300025272 Bacteria 22986
84 Ga0209673_1008815 3300025273 Bacteria 4445
85 Ga0209675_1008644 3300025291 Bacteria 3708
86 Ga0209256_1000699 3300025299 Bacteria 44604
87 Ga0209051_1000412 3300025303 Bacteria 59121
88 Ga0209257_1000022 3300025304 Bacteria 765258
89 Ga0207656_10000490 3300025321 Bacteria 13100
90 Ga0207656_10012149 3300025321 Bacteria 3269
91 Ga0207656_10023186 3300025321 Bacteria 2497
92 Ga0207657_10022955 3300025919 Bacteria 5822
93 Ga0207657_10046035 3300025919 Bacteria 3822
94 Ga0207657_10120163 3300025919 Bacteria 2162
95 Ga0207694_10058385 3300025924 Bacteria 3001
96 Ga0207650_10020167 3300025925 Bacteria 4698
97 Ga0207644_10039372 3300025931 Bacteria 3336
98 Ga0207706_10000416 3300025933 Bacteria 45659
99 Ga0207691_10021242 3300025940 Bacteria 6132
100 Ga0207691_10108445 3300025940 Bacteria 2471
101 Ga0207711_10006124 3300025941 Bacteria 10160
102 Ga0207711_10029601 3300025941 Bacteria 4621
103 Ga0207711_10044843 3300025941 Bacteria 3776
104 Ga0207689_10000220 3300025942 Bacteria 50583
105 Ga0207667_10031602 3300025949 Bacteria 5713
106 Ga0207668_10053285 3300025972 Bacteria 2803
107 Ga0207677_10031838 3300026023 Bacteria 3382
108 Ga0207677_10111564 3300026023 Bacteria 2038
109 Ga0207703_10084308 3300026035 Bacteria 2657
110 Ga0207639_10037473 3300026041 Bacteria 3601
111 Ga0207678_10004930 3300026067 Bacteria 11984
112 Ga0207702_10022855 3300026078 Bacteria 5188
113 Ga0207702_10040904 3300026078 Bacteria 3886
114 Ga0207676_10008686 3300026095 Bacteria 7224
115 Ga0207674_10046173 3300026116 Bacteria 4474
116 Ga0207674_10060672 3300026116 Bacteria 3824
117 Ga0207675_100000548 3300026118 Bacteria 36639
118 Ga0207683_10073320 3300026121 Bacteria 3028
119 Ga0207698_10003008 3300026142 Bacteria 10115
120 Ga0207698_10010904 3300026142 Bacteria 5869
121 Ga0209371_1000064 3300027312 Bacteria 218637
122 Ga0209371_1000163 3300027312 Bacteria 100853
123 Ga0209371_1003063 3300027312 Bacteria 8579
124 Ga0307515_10015847 3300028794 Bacteria 13857
125 Ga0268256_1000028 3300030500 Bacteria 433179
126 Ga0268256_1000217 3300030500 Bacteria 63864
127 Ga0307513_10046785 3300031456 Bacteria 4713
128 Ga0265313_10033513 3300031595 Bacteria 2609
129 Ga0265342_10019347 3300031712 Bacteria 4390
130 Ga0265342_10077902 3300031712 Bacteria 1919
131 Ga0307409_100048151 3300031995 Bacteria 3241
132 Ga0307416_100067260 3300032002 Bacteria 2954
133 Ga0307416_100162081 3300032002 Bacteria 2068
134 Ga0307510_10024607 3300033180 Bacteria 6954
135 Ga0307510_10071177 3300033180 Bacteria 3466
136 Ga0373931_0001971 3300035691 Bacteria 9029
137 Ga0373927_0000519 3300035695 Bacteria 29224
138 Ga0373947_0105691 3300035725 Bacteria 1774
139 Ga0373937_0262754 3300036401 Bacteria 1628
140 Ga0373925_0010151 3300037068 Bacteria 6837
141 Ga0395900_0045403 3300037418 Bacteria 4526
142 Ga0395898_0044302 3300037466 Bacteria 4381
143 Ga0395905_0010574 3300037471 Bacteria 8963
144 Ga0395905_0057415 3300037471 Bacteria 3641
145 Ga0436364_0145179 3300037853 Bacteria 5161
146 Ga0395901_0150526 3300038443 Bacteria 2445
147 Ga0436361_0771588 3300039447 Bacteria 5415
148 Ga0439445_0007030 3300042004 Bacteria 2601
149 Ga0450911_000639 3300042115 Bacteria 10500
150 Ga0451576_0188676 3300045051 Bacteria 2153
151 Ga0495627_000010 3300046453 Bacteria 381168
152 Ga0495590_0000765 3300046457 Bacteria 14623
153 Ga0495629_0000037 3300046459 Bacteria 117099
154 Ga0495653_0000543 3300046463 Bacteria 28817
155 Ga0495650_0003604 3300046471 Bacteria 11158
156 Ga0495580_0001406 3300046472 Bacteria 21140
157 Ga0495580_0002205 3300046472 Bacteria 17036
158 Ga0495580_0008669 3300046472 Bacteria 8061
159 Ga0495605_0000924 3300046474 Bacteria 20118
160 Ga0495664_0007093 3300046477 Bacteria 6209
161 Ga0495594_0003762 3300046499 Bacteria 7784
162 Ga0495583_0001909 3300046506 Bacteria 19291
163 Ga0495583_0002371 3300046506 Bacteria 16256
164 Ga0495610_0003370 3300046512 Bacteria 12508
165 Ga0495616_0000901 3300046513 Bacteria 21427
166 Ga0495620_0003387 3300046515 Bacteria 9123
167 Ga0495628_0011995 3300046516 Bacteria 7309
168 Ga0495628_0027147 3300046516 Bacteria 4661
169 Ga0495630_0000197 3300046517 Bacteria 47066
170 Ga0495631_0002916 3300046518 Bacteria 9478
171 Ga0495648_0008768 3300046524 Bacteria 7915
172 Ga0495648_0013235 3300046524 Bacteria 6112
173 Ga0495666_0003406 3300046526 Bacteria 8022
174 Ga0495666_0017987 3300046526 Bacteria 3520
175 Ga0495652_0004001 3300046529 Bacteria 14262
176 Ga0495665_0000041 3300046531 Bacteria 49646
177 Ga0495665_0008125 3300046531 Bacteria 5691
178 Ga0495587_0084793 3300046536 Bacteria 1835
179 Ga0495621_0002446 3300046539 Bacteria 5006
180 Ga0495597_0000011 3300046542 Bacteria 221377
181 Ga0495597_0000092 3300046542 Bacteria 79435
182 Ga0495645_0015976 3300046543 Bacteria 5349
183 Ga0495633_0001896 3300046558 Bacteria 15246
184 Ga0495668_0030988 3300046616 Bacteria 3015
185 Ga0495635_0005830 3300046663 Bacteria 8584
186 Ga0495661_0004274 3300046665 Bacteria 10378
187 Ga0495646_0002679 3300046680 Bacteria 11021
188 Ga0495646_0003082 3300046680 Bacteria 10340
189 Ga0495624_0001251 3300046690 Bacteria 20060
190 Ga0495624_0002820 3300046690 Bacteria 13013
191 Ga0495624_0041184 3300046690 Bacteria 2956
192 Ga0495671_0016913 3300046692 Bacteria 3887
193 Ga0495660_0002610 3300046810 Bacteria 11452
194 Ga0495674_0000644 3300047319 Bacteria 32709
195 Ga0495674_0015129 3300047319 Bacteria 7216
196 Ga0495674_0072816 3300047319 Bacteria 2963
197 Ga0495672_0005416 3300047320 Bacteria 10130
198 Ga0495680_0001009 3300047322 Bacteria 31269
199 Ga0495683_0001177 3300047323 Bacteria 17859
200 Ga0495687_006336 3300047443 Bacteria 7284
201 Ga0495675_0006913 3300047444 Bacteria 6968
202 Ga0495679_000449 3300047446 Bacteria 30344
203 Ga0495684_0020167 3300047471 Bacteria 5135
204 Ga0495593_0000400 3300047673 Bacteria 24103
205 Ga0495593_0002895 3300047673 Bacteria 10344
206 Ga0495602_0000702 3300048088 Bacteria 31541
207 Ga0496104_0003999 3300048907 Bacteria 12770
208 Ga0496105_0099318 3300048908 Bacteria 2404
209 Ga0496106_0000513 3300048909 Bacteria 27467
210 Ga0496110_0006049 3300048913 Bacteria 9538
211 Ga0496112_0221283 3300048915 Bacteria 1849
212 Ga0496117_0009656 3300048920 Bacteria 8928
213 Ga0496118_0013378 3300048921 Bacteria 7768
214 Ga0496121_0000227 3300048924 Bacteria 121085
215 Ga0496121_0004135 3300048924 Bacteria 19864
216 Ga0496121_0028952 3300048924 Bacteria 5141
217 Ga0496125_0004978 3300048928 Bacteria 15023
218 Ga0496125_0029180 3300048928 Bacteria 4963
219 Ga0496126_0085369 3300048929 Bacteria 2783
220 Ga0495678_014180 3300049459 Bacteria 3714
221 Ga0501034_0000124 3300049571 Bacteria 142890
222 Ga0501034_0009202 3300049571 Bacteria 10362
223 Ga0501034_0284397 3300049571 Bacteria 1593
224 Ga0501043_0056956 3300049579 Bacteria 3070
225 Ga0501047_0138190 3300049581 Bacteria 2316
226 Ga0501047_0183488 3300049581 Bacteria 1958
227 Ga0501067_0001365 3300049583 Bacteria 13201
228 Ga0501083_0062641 3300049744 Bacteria 2481
229 Ga0501083_0120492 3300049744 Bacteria 1720
230 Ga0501035_0005174 3300049822 Bacteria 12335
231 Ga0501035_0046091 3300049822 Bacteria 3921
232 Ga0501035_0066852 3300049822 Bacteria 3190
233 Ga0501035_0160224 3300049822 Bacteria 1948
234 Ga0501044_0000076 3300049823 Bacteria 120755
235 Ga0501044_0143813 3300049823 Bacteria 2372
236 nmdc:mga00v17_42435_c1 3300050491 Bacteria 2736
237 nmdc:mga08y16_112445_c1 3300050511 Bacteria 2835
238 Ga0500643_022369 3300053087 Bacteria 2036
239 Ga0500644_0002484 3300053088 Bacteria 4609
240 Ga0500594_0000354 3300053118 Bacteria 10257
241 Ga0500559_0003294 3300053136 Bacteria 8008
242 Ga0500586_004287 3300053145 Bacteria 3471
243 Ga0500616_0004443 3300053153 Bacteria 9994

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025919 Ga0207657_10120163 Ga0207657_101201631 391
2 3300031995 Ga0307409_100048151 Ga0307409_1000481512 437
3 3300049744 Ga0501083_0062641 Ga0501083_0062641_1061_2434 437
4 3300032002 Ga0307416_100162081 Ga0307416_1001620811 439
5 3300036401 Ga0373937_0262754 Ga0373937_0262754_13_1410 446
6 3300050511 nmdc:mga08y16_112445_c1 nmdc:mga08y16_112445_c1_30_1493 449
7 3300009011 Ga0105251_10060263 Ga0105251_100602631 454
8 3300053087 Ga0500643_022369 Ga0500643_022369_264_1742 460
9 3300053145 Ga0500586_004287 Ga0500586_004287_1083_2561 460
10 3300049822 Ga0501035_0160224 Ga0501035_0160224_271_1812 461
11 3300005530 Ga0070679_100019299 Ga0070679_1000192995 462
12 3300005563 Ga0068855_100008870 Ga0068855_10000887011 462
13 3300009551 Ga0105238_10011720 Ga0105238_1001172011 462
14 3300035725 Ga0373947_0105691 Ga0373947_0105691_57_1520 463
15 3300009176 Ga0105242_10234155 Ga0105242_102341551 466
16 3300046459 Ga0495629_0000037 Ga0495629_0000037_114010_115470 466
17 3300046516 Ga0495628_0011995 Ga0495628_0011995_1603_3063 466
18 3300046680 Ga0495646_0003082 Ga0495646_0003082_1606_3066 466
19 3300046690 Ga0495624_0001251 Ga0495624_0001251_1630_3090 466
20 3300047319 Ga0495674_0015129 Ga0495674_0015129_1629_3089 466
21 3300047673 Ga0495593_0000400 Ga0495593_0000400_20325_21785 466
22 3300014969 Ga0157376_10081144 Ga0157376_100811442 470
23 3300031595 Ga0265313_10033513 Ga0265313_100335132 474
24 3300031712 Ga0265342_10077902 Ga0265342_100779022 474
25 3300009094 Ga0111539_10003810 Ga0111539_1000381021 476
26 3300026078 Ga0207702_10022855 Ga0207702_100228554 478
27 3300037471 Ga0395905_0010574 Ga0395905_0010574_2490_4031 479
28 3300048928 Ga0496125_0029180 Ga0496125_0029180_1866_3410 480
29 3300025273 Ga0209673_1008815 Ga0209673_10088153 481
30 3300053088 Ga0500644_0002484 Ga0500644_0002484_1752_3293 481
31 iso_pu_bacteria 2622736605 2623502302 481
32 3300009147 Ga0114129_10108901 Ga0114129_101089014 483
33 3300031456 Ga0307513_10046785 Ga0307513_100467853 483
34 3300046536 Ga0495587_0084793 Ga0495587_0084793_297_1808 483
35 3300028794 Ga0307515_10015847 Ga0307515_100158478 484
36 3300033180 Ga0307510_10071177 Ga0307510_100711773 484
37 3300005355 Ga0070671_100004854 Ga0070671_1000048543 485
38 3300005834 Ga0068851_10040948 Ga0068851_100409482 485
39 3300009177 Ga0105248_10105626 Ga0105248_101056262 485
40 3300025931 Ga0207644_10039372 Ga0207644_100393721 485
41 3300025941 Ga0207711_10029601 Ga0207711_100296013 485
42 3300026121 Ga0207683_10073320 Ga0207683_100733203 485
43 3300049571 Ga0501034_0000124 Ga0501034_0000124_67847_69391 485
44 3300046472 Ga0495580_0002205 Ga0495580_0002205_11030_12571 486
45 3300048929 Ga0496126_0085369 Ga0496126_0085369_477_2003 487
46 3300031712 Ga0265342_10019347 Ga0265342_100193473 488
47 3300046457 Ga0495590_0000765 Ga0495590_0000765_9008_10549 488
48 3300046515 Ga0495620_0003387 Ga0495620_0003387_5249_6790 488
49 3300046524 Ga0495648_0013235 Ga0495648_0013235_3671_5212 488
50 3300046692 Ga0495671_0016913 Ga0495671_0016913_149_1690 488
51 3300047323 Ga0495683_0001177 Ga0495683_0001177_10899_12440 488
52 3300047446 Ga0495679_000449 Ga0495679_000449_15993_17534 488
53 3300048920 Ga0496117_0009656 Ga0496117_0009656_4335_5876 488
54 3300048921 Ga0496118_0013378 Ga0496118_0013378_2910_4451 488
55 3300049459 Ga0495678_014180 Ga0495678_014180_361_1902 488
56 iso_pu_bacteria 2643221683 2644464853 488
57 iso_pu_bacteria 2596583598 2597032821 489
58 iso_pu_bacteria 2894023352 2894026535 489
59 iso_pu_bacteria 2894772417 2894774781 489
60 iso_pu_bacteria 2929199973 2929200766 489
61 iso_pu_bacteria 2932422444 2932426212 489
62 iso_pu_bacteria 2958071322 2958073586 489
63 iso_pu_bacteria 8055909800 8055913982 489
64 3300005616 Ga0068852_100000997 Ga0068852_1000009972 490
65 3300005834 Ga0068851_10000492 Ga0068851_100004921 490
66 3300025321 Ga0207656_10000490 Ga0207656_100004901 490
67 3300026142 Ga0207698_10003008 Ga0207698_100030085 490
68 3300035695 Ga0373927_0000519 Ga0373927_0000519_18822_20366 490
69 3300037068 Ga0373925_0010151 Ga0373925_0010151_3050_4594 490
70 3300048907 Ga0496104_0003999 Ga0496104_0003999_1882_3423 490
71 3300048908 Ga0496105_0099318 Ga0496105_0099318_120_1661 490
72 3300003856 Ga0058692_1000132 Ga0058692_100013241 492
73 3300025291 Ga0209675_1008644 Ga0209675_10086442 492
74 3300027312 Ga0209371_1000064 Ga0209371_100006463 492
75 3300027312 Ga0209371_1000163 Ga0209371_100016359 492
76 3300030500 Ga0268256_1000028 Ga0268256_1000028223 492
77 3300003763 Ga0055529_1000742 Ga0055529_100074211 493
78 3300003792 Ga0055540_1004888 Ga0055540_10048883 493
79 3300003794 Ga0055531_10000415 Ga0055531_1000041518 493
80 3300005328 Ga0070676_10028964 Ga0070676_100289641 493
81 3300005334 Ga0068869_100001178 Ga0068869_1000011783 493
82 3300005335 Ga0070666_10013972 Ga0070666_100139721 493
83 3300005338 Ga0068868_100012935 Ga0068868_1000129352 493
84 3300005339 Ga0070660_100084417 Ga0070660_1000844172 493
85 3300005345 Ga0070692_10021993 Ga0070692_100219932 493
86 3300005347 Ga0070668_100172673 Ga0070668_1001726731 493
87 3300005353 Ga0070669_100029108 Ga0070669_1000291083 493
88 3300005355 Ga0070671_100028743 Ga0070671_1000287434 493
89 3300005366 Ga0070659_100004633 Ga0070659_1000046332 493
90 3300005367 Ga0070667_100032474 Ga0070667_1000324742 493
91 3300005457 Ga0070662_100000938 Ga0070662_1000009385 493
92 3300005459 Ga0068867_100110688 Ga0068867_1001106882 493
93 3300005535 Ga0070684_100023782 Ga0070684_1000237823 493
94 3300005539 Ga0068853_100006710 Ga0068853_1000067104 493
95 3300005539 Ga0068853_100118930 Ga0068853_1001189302 493
96 3300005543 Ga0070672_100059228 Ga0070672_1000592283 493
97 3300005547 Ga0070693_100018855 Ga0070693_1000188553 493
98 3300005547 Ga0070693_100034703 Ga0070693_1000347032 493
99 3300005563 Ga0068855_100057853 Ga0068855_1000578533 493
100 3300005577 Ga0068857_100127607 Ga0068857_1001276072 493
101 3300005578 Ga0068854_100042065 Ga0068854_1000420653 493
102 3300005614 Ga0068856_100016475 Ga0068856_1000164753 493
103 3300005616 Ga0068852_100025095 Ga0068852_1000250955 493
104 3300005618 Ga0068864_100044064 Ga0068864_1000440642 493
105 3300005719 Ga0068861_100005982 Ga0068861_1000059825 493
106 3300005834 Ga0068851_10013610 Ga0068851_100136103 493
107 3300005842 Ga0068858_100003650 Ga0068858_1000036504 493
108 3300005842 Ga0068858_100030414 Ga0068858_1000304142 493
109 3300006051 Ga0075364_10050724 Ga0075364_100507242 493
110 3300006237 Ga0097621_100161098 Ga0097621_1001610982 493
111 3300006358 Ga0068871_100031030 Ga0068871_1000310304 493
112 3300006881 Ga0068865_100042583 Ga0068865_1000425832 493
113 3300009093 Ga0105240_10013312 Ga0105240_100133124 493
114 3300009098 Ga0105245_10008894 Ga0105245_100088945 493
115 3300009177 Ga0105248_10002320 Ga0105248_100023203 493
116 3300009177 Ga0105248_10013027 Ga0105248_100130277 493
117 3300009177 Ga0105248_10048279 Ga0105248_100482794 493
118 3300009551 Ga0105238_10100710 Ga0105238_101007104 493
119 3300009551 Ga0105238_10138140 Ga0105238_101381402 493
120 3300010375 Ga0105239_10054189 Ga0105239_100541893 493
121 3300013100 Ga0157373_10022216 Ga0157373_100222162 493
122 3300013296 Ga0157374_10023231 Ga0157374_100232313 493
123 3300013306 Ga0163162_10011546 Ga0163162_100115466 493
124 3300013307 Ga0157372_10016895 Ga0157372_100168956 493
125 3300013307 Ga0157372_10038755 Ga0157372_100387554 493
126 3300013308 Ga0157375_10001936 Ga0157375_1000193611 493
127 3300014326 Ga0157380_10044473 Ga0157380_100444731 493
128 3300014745 Ga0157377_10000601 Ga0157377_1000060112 493
129 3300014968 Ga0157379_10012937 Ga0157379_100129377 493
130 3300014968 Ga0157379_10019334 Ga0157379_100193343 493
131 3300014969 Ga0157376_10029935 Ga0157376_100299352 493
132 3300017792 Ga0163161_10008729 Ga0163161_100087296 493
133 3300025272 Ga0209455_1000601 Ga0209455_100060112 493
134 3300025303 Ga0209051_1000412 Ga0209051_100041212 493
135 3300025304 Ga0209257_1000022 Ga0209257_1000022686 493
136 3300025321 Ga0207656_10012149 Ga0207656_100121492 493
137 3300025321 Ga0207656_10023186 Ga0207656_100231862 493
138 3300025919 Ga0207657_10022955 Ga0207657_100229554 493
139 3300025919 Ga0207657_10046035 Ga0207657_100460353 493
140 3300025924 Ga0207694_10058385 Ga0207694_100583852 493
141 3300025925 Ga0207650_10020167 Ga0207650_100201672 493
142 3300025933 Ga0207706_10000416 Ga0207706_1000041623 493
143 3300025940 Ga0207691_10021242 Ga0207691_100212422 493
144 3300025941 Ga0207711_10006124 Ga0207711_100061249 493
145 3300025941 Ga0207711_10044843 Ga0207711_100448433 493
146 3300025942 Ga0207689_10000220 Ga0207689_1000022025 493
147 3300025949 Ga0207667_10031602 Ga0207667_100316023 493
148 3300025972 Ga0207668_10053285 Ga0207668_100532852 493
149 3300026023 Ga0207677_10031838 Ga0207677_100318383 493
150 3300026023 Ga0207677_10111564 Ga0207677_101115642 493
151 3300026035 Ga0207703_10084308 Ga0207703_100843082 493
152 3300026041 Ga0207639_10037473 Ga0207639_100374732 493
153 3300026067 Ga0207678_10004930 Ga0207678_100049306 493
154 3300026078 Ga0207702_10040904 Ga0207702_100409043 493
155 3300026095 Ga0207676_10008686 Ga0207676_100086865 493
156 3300026116 Ga0207674_10046173 Ga0207674_100461733 493
157 3300026116 Ga0207674_10060672 Ga0207674_100606722 493
158 3300026118 Ga0207675_100000548 Ga0207675_10000054812 493
159 3300026142 Ga0207698_10010904 Ga0207698_100109043 493
160 3300032002 Ga0307416_100067260 Ga0307416_1000672602 493
161 3300033180 Ga0307510_10024607 Ga0307510_100246072 493
162 3300035691 Ga0373931_0001971 Ga0373931_0001971_3830_5374 493
163 3300037466 Ga0395898_0044302 Ga0395898_0044302_2796_4337 493
164 3300037471 Ga0395905_0057415 Ga0395905_0057415_1967_3508 493
165 3300037853 Ga0436364_0145179 Ga0436364_0145179_1756_3297 493
166 3300038443 Ga0395901_0150526 Ga0395901_0150526_361_1902 493
167 3300039447 Ga0436361_0771588 Ga0436361_0771588_50_1591 493
168 3300042004 Ga0439445_0007030 Ga0439445_0007030_1010_2554 493
169 3300042115 Ga0450911_000639 Ga0450911_000639_5631_7175 493
170 3300045051 Ga0451576_0188676 Ga0451576_0188676_254_1798 493
171 3300046453 Ga0495627_000010 Ga0495627_000010_300158_301702 493
172 3300046463 Ga0495653_0000543 Ga0495653_0000543_19846_21387 493
173 3300046472 Ga0495580_0001406 Ga0495580_0001406_11679_13220 493
174 3300046472 Ga0495580_0008669 Ga0495580_0008669_3370_4911 493
175 3300046474 Ga0495605_0000924 Ga0495605_0000924_11959_13500 493
176 3300046477 Ga0495664_0007093 Ga0495664_0007093_4646_6187 493
177 3300046499 Ga0495594_0003762 Ga0495594_0003762_2687_4228 493
178 3300046506 Ga0495583_0001909 Ga0495583_0001909_11551_13092 493
179 3300046506 Ga0495583_0002371 Ga0495583_0002371_12989_14530 493
180 3300046512 Ga0495610_0003370 Ga0495610_0003370_3781_5322 493
181 3300046513 Ga0495616_0000901 Ga0495616_0000901_3076_4617 493
182 3300046516 Ga0495628_0027147 Ga0495628_0027147_1557_3098 493
183 3300046517 Ga0495630_0000197 Ga0495630_0000197_24338_25879 493
184 3300046518 Ga0495631_0002916 Ga0495631_0002916_6944_8485 493
185 3300046524 Ga0495648_0008768 Ga0495648_0008768_5192_6733 493
186 3300046526 Ga0495666_0003406 Ga0495666_0003406_3299_4840 493
187 3300046526 Ga0495666_0017987 Ga0495666_0017987_1078_2619 493
188 3300046529 Ga0495652_0004001 Ga0495652_0004001_7411_8952 493
189 3300046531 Ga0495665_0000041 Ga0495665_0000041_4328_5869 493
190 3300046531 Ga0495665_0008125 Ga0495665_0008125_1660_3201 493
191 3300046539 Ga0495621_0002446 Ga0495621_0002446_266_1807 493
192 3300046542 Ga0495597_0000011 Ga0495597_0000011_154814_156358 493
193 3300046543 Ga0495645_0015976 Ga0495645_0015976_128_1669 493
194 3300046616 Ga0495668_0030988 Ga0495668_0030988_897_2438 493
195 3300046663 Ga0495635_0005830 Ga0495635_0005830_6385_7926 493
196 3300046680 Ga0495646_0002679 Ga0495646_0002679_4155_5696 493
197 3300046690 Ga0495624_0002820 Ga0495624_0002820_1564_3105 493
198 3300046690 Ga0495624_0041184 Ga0495624_0041184_12_1553 493
199 3300046810 Ga0495660_0002610 Ga0495660_0002610_9121_10665 493
200 3300047319 Ga0495674_0000644 Ga0495674_0000644_602_2143 493
201 3300047319 Ga0495674_0072816 Ga0495674_0072816_736_2277 493
202 3300047320 Ga0495672_0005416 Ga0495672_0005416_3587_5131 493
203 3300047322 Ga0495680_0001009 Ga0495680_0001009_21940_23481 493
204 3300047444 Ga0495675_0006913 Ga0495675_0006913_2899_4440 493
205 3300047673 Ga0495593_0002895 Ga0495593_0002895_5624_7165 493
206 3300048088 Ga0495602_0000702 Ga0495602_0000702_26601_28142 493
207 3300048909 Ga0496106_0000513 Ga0496106_0000513_16198_17742 493
208 3300048913 Ga0496110_0006049 Ga0496110_0006049_3116_4660 493
209 3300048915 Ga0496112_0221283 Ga0496112_0221283_136_1680 493
210 3300048924 Ga0496121_0004135 Ga0496121_0004135_14240_15784 493
211 3300048924 Ga0496121_0028952 Ga0496121_0028952_295_1836 493
212 3300048928 Ga0496125_0004978 Ga0496125_0004978_5757_7301 493
213 3300049571 Ga0501034_0284397 Ga0501034_0284397_42_1583 493
214 3300049579 Ga0501043_0056956 Ga0501043_0056956_11_1552 493
215 3300049581 Ga0501047_0138190 Ga0501047_0138190_677_2218 493
216 3300049581 Ga0501047_0183488 Ga0501047_0183488_97_1638 493
217 3300049583 Ga0501067_0001365 Ga0501067_0001365_11037_12578 493
218 3300049744 Ga0501083_0120492 Ga0501083_0120492_60_1601 493
219 3300049822 Ga0501035_0005174 Ga0501035_0005174_1685_3226 493
220 3300049822 Ga0501035_0046091 Ga0501035_0046091_1176_2732 493
221 3300049822 Ga0501035_0066852 Ga0501035_0066852_1126_2667 493
222 3300049823 Ga0501044_0000076 Ga0501044_0000076_5479_7035 493
223 3300049823 Ga0501044_0143813 Ga0501044_0143813_537_2078 493
224 3300050491 nmdc:mga00v17_42435_c1 nmdc:mga00v17_42435_c1_287_1831 493
225 3300053118 Ga0500594_0000354 Ga0500594_0000354_4191_5732 493
226 3300053153 Ga0500616_0004443 Ga0500616_0004443_4016_5557 493
227 3300046471 Ga0495650_0003604 Ga0495650_0003604_2164_3708 494
228 3300046542 Ga0495597_0000092 Ga0495597_0000092_14730_16280 496
229 iso_pu_bacteria 2856314179 2856318167 496
230 iso_pu_bacteria 2885318864 2885320800 496
231 iso_pu_bacteria 2906414383 2906418204 496
232 iso_pu_bacteria 2961170736 2961175847 496
233 iso_pu_bacteria 2970503327 2970508512 496
234 iso_pu_bacteria 2979808191 2979811839 496
235 iso_pu_bacteria 2977864932 2977866213 498
236 3300003316 rootH1_10142626 rootH1_101426262 499
237 3300003322 rootL2_10044723 rootL2_100447232 499
238 3300037418 Ga0395900_0045403 Ga0395900_0045403_748_2316 499
239 3300047471 Ga0495684_0020167 Ga0495684_0020167_883_2448 499
240 3300049571 Ga0501034_0009202 Ga0501034_0009202_937_2499 499
241 3300027312 Ga0209371_1003063 Ga0209371_10030634 500
242 3300030500 Ga0268256_1000217 Ga0268256_10002178 500
243 3300048924 Ga0496121_0000227 Ga0496121_0000227_24255_25823 502
244 3300053136 Ga0500559_0003294 Ga0500559_0003294_4463_6058 503
245 3300005355 Ga0070671_100067601 Ga0070671_1000676011 504
246 3300005456 Ga0070678_100107941 Ga0070678_1001079411 504
247 3300005459 Ga0068867_100029331 Ga0068867_1000293313 504
248 3300005543 Ga0070672_100012991 Ga0070672_1000129911 504
249 3300009098 Ga0105245_10122130 Ga0105245_101221301 504
250 3300009176 Ga0105242_10039621 Ga0105242_100396212 504
251 3300013308 Ga0157375_10101593 Ga0157375_101015931 504
252 3300025940 Ga0207691_10108445 Ga0207691_101084452 504
253 3300025299 Ga0209256_1000699 Ga0209256_100069926 508
254 3300046665 Ga0495661_0004274 Ga0495661_0004274_5671_7326 509
255 3300047443 Ga0495687_006336 Ga0495687_006336_5267_6922 509
256 3300003203 JGI25406J46586_10000110 JGI25406J46586_100001107 512
257 3300005985 Ga0081539_10000118 Ga0081539_10000118115 512
258 3300046558 Ga0495633_0001896 Ga0495633_0001896_6061_7716 512

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02776

TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

38

160

0.96

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

402

549

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4k9o-assembly1.cif.gz_D crystal structure of the phe397ala mutant of benzoylformate decarboxylase from pseudomonas putida 0.8383 20 511
3f6b-assembly1.cif.gz_X crystal structure of benzoylformate decarboxylase in complex with the pyridyl inhibitor paa 0.8381 20 509
4mpp-assembly1.cif.gz_A crystal structure of benzoylformate decarboxylase mutant h281y/t377p/f397t/a460i 0.8374 20 509
4mzx-assembly1.cif.gz_A crystal structure of benzoylformate decarboxylase mutant t377l/a460y 0.8358 20 509
6qsi-assembly1.cif.gz_A pseudomonas fluorescens pf-5 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase 0.8348 20 511
ID Description Score Start End Superfamily
af_O53554_325_512_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9698 329 512 3.40.50.970
af_O53554_325_512_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9447 329 512 3.40.50.970
af_A0A0R0ECS7_251_324_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9122 23 89 3.40.50.970
af_C0PCJ8_81_201_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9023 31 128 3.40.50.970
2v3wC03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8947 330 509 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A1A3JMJ1-F1-model_v4 deleted 0.9759 379 512
AF-A0A7Y4U1F7-F1-model_v4 Acetolactate synthase large subunit 0.973 144 509 GO:0000287
GO:0003984
GO:0030976
GO:0050660
AF-A0A0J1CS54-F1-model_v4 Thiamine pyrophosphate enzyme TPP-binding domain-containing protein 0.9725 217 512 GO:0003984
GO:0030976
GO:0044281
GO:0050660
AF-A0A6G8Q9X8-F1-model_v4 Acetolactate synthase large subunit 0.9712 21 512 GO:0000287
GO:0003984
GO:0030976
GO:0050660
AF-A0A349WAS1-F1-model_v4 Acetolactate synthase large subunit 0.97 180 512 GO:0003984
GO:0030976
GO:0044281
GO:0050660

Feature Viewer

pLDDT pTM Quality
88.26 0.9 High
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Predicted Structure (AlphaFold2)

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