F368182

General Info

Members Datasets Scaffolds Average Seq Length
258 207 516 225

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100003759|Ga0307408_1000037598
Length 264
Sequence MGKVIRNSNIKMLKKRGFHLSYGKIKVWVYQTIMNDLGGFMENKISIAIDGPAAAGKSTVAKVVAEKLSYIYIDTGAMYRALTYKALANNINLDDENRLFNTLLETKLELYPSPNGQLVFLDGQEVTEAIRSSEVTNSVSLVATHQKVREEMVRMQQSFAVNGGVVMDGRDIGTHVLPNAEVKVFLLASVEERAVRRHTENLQKGYSSNLEQLKEDIARRDKIDSEREFAPLKKAEDAIEIDTTSLSIPEVVEKIMDLVHERVG

Samples

Sample ID Description Type Environment
1 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
2 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
6 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
7 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
8 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
12 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
13 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
14 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
15 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
16 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
17 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
18 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
19 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
21 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
26 3300030083 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Metagenome Unclassified
27 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
28 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
29 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
30 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
31 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
32 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
33 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
34 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
35 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
36 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
37 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
38 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
39 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
40 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
41 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
42 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
43 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
44 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
45 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
46 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
47 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
48 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
49 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
50 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
51 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
52 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
53 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
54 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
55 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
56 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
57 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
58 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
59 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
60 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
61 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
63 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
66 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
67 3300049772 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control Metagenome Rhizosphere
68 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
69 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
70 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
71 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
72 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
73 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
74 2551306519 Bacillus sp. WBUNB004 Isolate Rhizosphere
75 2554235283 Bacillus safensis VK Isolate Rhizosphere
76 2554235469 Sporolactobacillus laevolacticus DSM 442 Isolate Rhizosphere
77 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
78 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
79 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
80 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
81 2643221729 Bacillus sp. Root11 Isolate Unclassified
82 2643221730 Bacillus sp. Root131 Isolate Unclassified
83 2643221731 Bacillus sp. Root147 Isolate Unclassified
84 2643221732 Bacillus sp. Root239 Isolate Unclassified
85 2643221735 Bacillus sp. Root920 Isolate Unclassified
86 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
87 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
88 2671180694 Paenibacillus sp. A3 Isolate Unclassified
89 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
90 2684622632 Bacillus cereus 905 Isolate Unclassified
91 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
92 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
93 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
94 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
95 2703719227 Bacillus mycoides GOE6 Isolate Rhizosphere
96 2711768088 Sporolactobacillus terrae DSM 11697 Isolate Rhizosphere
97 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
98 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
99 2738541295 Bacillus sp. OK085 Isolate Unclassified
100 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
101 2738541358 Bacillus sp. OV752 Isolate Unclassified
102 2738543006 Bacillus sp. OK077 Isolate Unclassified
103 2738543010 Bacillus sp. YR335 Isolate Unclassified
104 2738543017 Bacillus sp. OV186 Isolate Unclassified
105 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
106 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
107 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
108 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
109 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
110 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
111 2811994870 Bacillus sp. JB4 Isolate Unclassified
112 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
113 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
114 2818991443 Bacillus thuringiensis 1230 Isolate Unclassified
115 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
116 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
117 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
118 2842682962 Bacillus sp. R-72492 Isolate Unclassified
119 2842882022 Bacillus sp. R-71893 Isolate Unclassified
120 2849139964 Bacillus sp. R-71875 Isolate Unclassified
121 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
122 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
123 2857472729 Cohnella sp. R-74144 Isolate Unclassified
124 2857581216 Bacillus sp. R-71922 Isolate Unclassified
125 2857586860 Bacillus sp. R-71935 Isolate Unclassified
126 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
127 2860837431 Bacillus sp. WR11 Isolate Unclassified
128 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
129 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
130 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
131 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
132 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
133 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
134 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
135 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
136 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
137 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
138 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
139 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
140 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
141 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
142 2916971899 Alkalihalobacillus miscanthi AK13 Isolate Rhizosphere
143 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
144 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
145 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
146 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
147 2919720352 Priestia megaterium 4340 Isolate Unclassified
148 2919726948 Bacillus pumilus 4489 Isolate Unclassified
149 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
150 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
151 2929004312 Priestia megaterium 1104 Isolate Unclassified
152 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
153 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
154 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
155 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
156 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
157 2938917290 Bacillus sp. CR71 Isolate Unclassified
158 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
159 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
160 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
161 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
162 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
163 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
164 2965761152 Bacillus sp. COPE52 Isolate Unclassified
165 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
166 2969141011 Bacillus velezensis MH25 Isolate Unclassified
167 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
168 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
169 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
170 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
171 2979083700 Bacillus toyonensis SORGH_AS 407 Isolate Unclassified
172 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
173 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
174 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
175 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
176 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
177 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
178 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
179 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
180 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
181 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
182 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
183 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
184 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
185 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
186 3006978542 Bacillus sp. FJAT-49705 Isolate Rhizosphere
187 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
188 8022621104 Bacillus sp. PIC28 Isolate Rhizosphere
189 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
190 8022653035 Bacillus sp. Rc4 Isolate Unclassified
191 8022792930 Bacillus sp. Xin Isolate Rhizosphere
192 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
193 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
194 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
195 8023438354 Bacillus sp. BH2 Isolate Unclassified
196 8023444577 Bacillus sp. BH32 Isolate Unclassified
197 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
198 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
199 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere
200 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
201 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
202 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
203 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
204 8057582654 Bacillus arachidis YX15 Isolate Rhizosphere
205 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere
206 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
207 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 43.41
Metatranscriptomes 2.33
Isolates 54.26

Biome Distribution

Category Percentage (%)
Aerial Root 0.78
Bulb 0
Endosphere 15.12
Nodule 0.78
Rhizoplane 3.49
Rhizosphere 46.9
Stem 0
Stem Tuber 0
Unclassified 0.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307408_100003759 3300031548 Bacteria 10331
2 JGI25159J45721_1001979 3300002987 Bacteria 8159
3 JGI25159J45721_1002835 3300002987 Bacteria 6371
4 JGI25159J45721_1023214 3300002987 Bacteria 1129
5 JGI25151J46595_10000006 3300003187 Bacteria 419711
6 JGI25151J46595_10001503 3300003187 Bacteria 15649
7 JGI25151J46595_10003114 3300003187 Bacteria 9337
8 JGI25151J46595_10018218 3300003187 Bacteria 3023
9 JGI25151J46595_10018371 3300003187 Bacteria 3005
10 JGI25151J46595_10018711 3300003187 Bacteria 2963
11 JGI25151J46595_10046573 3300003187 Bacteria 1518
12 JGI25151J46595_10047202 3300003187 Bacteria 1501
13 JGI25151J46595_10063276 3300003187 Bacteria 1164
14 Ga0006562J51391_1001638 3300003578 Bacteria 18540
15 Ga0006562J51391_1002928 3300003578 Bacteria 3751
16 Ga0055532_1000079 3300003758 Bacteria 121008
17 Ga0055535_1002274 3300003761 Bacteria 7113
18 Ga0055536_1012859 3300003781 Bacteria 3067
19 Ga0055541_1000137 3300003841 Bacteria 40035
20 Ga0055541_1001770 3300003841 Bacteria 4531
21 Ga0065704_10139052 3300005289 Bacteria 1537
22 Ga0070714_100354217 3300005435 Bacteria 1379
23 Ga0105251_10184797 3300009011 Bacteria 939
24 Ga0105244_10014371 3300009036 Bacteria 4581
25 Ga0105244_10106819 3300009036 Bacteria 1365
26 Ga0105244_10143394 3300009036 Bacteria 1147
27 Ga0105244_10189894 3300009036 Bacteria 972
28 Ga0105244_10305072 3300009036 Bacteria 736
29 Ga0105250_10006358 3300009092 Bacteria 5168
30 Ga0105250_10024676 3300009092 Bacteria 2422
31 Ga0105250_10222260 3300009092 Bacteria 801
32 Ga0105246_10031067 3300011119 Bacteria 3532
33 Ga0105246_10063310 3300011119 Bacteria 2579
34 Ga0157371_10004789 3300013102 Bacteria 11662
35 Ga0209566_100015 3300025225 Bacteria 457963
36 Ga0209566_100090 3300025225 Bacteria 141829
37 Ga0209147_100014 3300025229 Bacteria 597841
38 Ga0209147_102160 3300025229 Bacteria 5395
39 Ga0209130_1001340 3300025284 Bacteria 16657
40 Ga0209130_1001398 3300025284 Bacteria 16128
41 Ga0209130_1007443 3300025284 Bacteria 3379
42 Ga0209676_1000940 3300025292 Bacteria 35862
43 Ga0209025_1000001 3300025294 Bacteria 1888151
44 Ga0209025_1000041 3300025294 Bacteria 373694
45 Ga0209025_1000258 3300025294 Bacteria 124837
46 Ga0209025_1000939 3300025294 Bacteria 44365
47 Ga0209025_1004262 3300025294 Bacteria 12574
48 Ga0209025_1011014 3300025294 Bacteria 6032
49 Ga0209025_1011409 3300025294 Bacteria 5859
50 Ga0209025_1012709 3300025294 Bacteria 5367
51 Ga0209025_1015620 3300025294 Bacteria 4557
52 Ga0209025_1016719 3300025294 Bacteria 4298
53 Ga0209025_1018936 3300025294 Bacteria 3864
54 Ga0209025_1023591 3300025294 Bacteria 3207
55 Ga0209025_1044580 3300025294 Bacteria 1851
56 Ga0209025_1087119 3300025294 Bacteria 1035
57 Ga0207696_1004771 3300025711 Bacteria 5764
58 Ga0207696_1004940 3300025711 Bacteria 5637
59 Ga0207655_1000925 3300025728 Bacteria 30529
60 Ga0207655_1085883 3300025728 Bacteria 1121
61 Ga0207713_1040017 3300025735 Bacteria 1971
62 Ga0207692_10168714 3300025898 Bacteria 1267
63 Ga0209974_10021717 3300027876 Bacteria 2127
64 Ga0237817_10045 3300030083 Bacteria 42887
65 Ga0268256_1004568 3300030500 Bacteria 5693
66 Ga0307408_100191593 3300031548 Bacteria 1648
67 Ga0307409_100002268 3300031995 Bacteria 9955
68 Ga0307409_100159674 3300031995 Bacteria 1970
69 Ga0307416_100217688 3300032002 Bacteria 1828
70 Ga0316582_0260986 3300036647 Bacteria 1188
71 Ga0316584_0230970 3300036712 Unclassified 1356
72 Ga0395899_0139561 3300037312 Bacteria 1725
73 Ga0395899_0142126 3300037312 Bacteria 1707
74 Ga0395898_0742174 3300037466 Bacteria 923
75 Ga0237819_00041 3300038705 Bacteria 45359
76 Ga0237819_01629 3300038705 Bacteria 5548
77 Ga0439439_0001770 3300041406 Bacteria 4407
78 Ga0439433_0001512 3300041999 Bacteria 4803
79 Ga0439449_0001454 3300042007 Bacteria 9263
80 Ga0439462_0001231 3300042015 Bacteria 5610
81 Ga0439462_0010972 3300042015 Bacteria 2302
82 Ga0466969_0001178 3300044656 Bacteria 14106
83 Ga0466961_0015707 3300044693 Bacteria 4858
84 Ga0453684_0768446 3300044712 Bacteria 1042
85 Ga0466968_0017368 3300044735 Bacteria 2875
86 Ga0466959_0005960 3300045049 Bacteria 8407
87 Ga0466958_0183502 3300045836 Bacteria 1328
88 Ga0466967_0040389 3300045976 Bacteria 4016
89 Ga0466967_0623525 3300045976 Bacteria 1065
90 Ga0495606_0059941 3300046507 Bacteria 2440
91 Ga0495654_0088629 3300046530 Bacteria 1439
92 Ga0495661_0104026 3300046665 Bacteria 1593
93 Ga0495657_0425138 3300046675 Bacteria 780
94 Ga0495626_0022075 3300048091 Bacteria 3147
95 Ga0496100_0511517 3300048903 Bacteria 926
96 Ga0496101_0320061 3300048904 Bacteria 1217
97 Ga0496102_0397585 3300048905 Bacteria 1296
98 Ga0496102_0415517 3300048905 Bacteria 1264
99 Ga0496110_0000627 3300048913 Bacteria 24179
100 Ga0496110_0390681 3300048913 Bacteria 1268
101 Ga0496111_0005012 3300048914 Bacteria 8426
102 Ga0496112_0266339 3300048915 Bacteria 1662
103 Ga0496116_0012778 3300048919 Bacteria 6823
104 Ga0496122_0029974 3300048925 Bacteria 4570
105 Ga0496122_0066768 3300048925 Bacteria 2596
106 Ga0496124_0000657 3300048927 Bacteria 57039
107 Ga0496125_0002232 3300048928 Bacteria 25769
108 Ga0496125_0002336 3300048928 Bacteria 24903
109 Ga0496125_0039500 3300048928 Bacteria 4061
110 Ga0501306_006483 3300049127 Bacteria 1374
111 Ga0501290_008285 3300049513 Bacteria 1312
112 Ga0501312_029764 3300049528 Bacteria 852
113 Ga0501315_014415 3300049531 Bacteria 1001
114 Ga0501315_022514 3300049531 Bacteria 859
115 Ga0501208_000290 3300049655 Bacteria 3712
116 Ga0501217_001824 3300049661 Bacteria 4085
117 Ga0501217_009523 3300049661 Bacteria 2115
118 Ga0501275_032666 3300049772 Bacteria 696
119 2511179966 2510917027 Bacteria 5287437
120 2511700060 2511231119 Bacteria 4019861
121 2512635843 2512564013 Bacteria 6286191
122 2524186236 2524023129 Bacteria 6762600
123 2540607224 2540341094 Bacteria 4061186
124 2545556746 2545555800 Bacteria 4222588
125 2553391673 2551306519 Bacteria 5465154
126 2555467464 2554235283 Bacteria 3683090
127 2556064683 2554235469 Bacteria 3590176
128 2578930996 2576861599 Bacteria 4217202
129 2595087731 2593339131 Bacteria 5116855
130 2595315577 2593339198 Bacteria 7267884
131 2631984342 2630968484 Bacteria 3876276
132 2644703990 2643221729 Bacteria 6621700
133 2644708683 2643221730 Bacteria 6523787
134 2644715968 2643221731 Bacteria 5623886
135 2644724162 2643221732 Bacteria 5756404
136 2644740638 2643221735 Bacteria 3676263
137 2651532061 2648501850 Bacteria 3975476
138 2672336768 2671180330 Bacteria 5521719
139 2673823519 2671180694 Bacteria 7506943
140 2674419165 2671180844 Bacteria 4164150
141 2685149420 2684622632 Bacteria 5380049
142 2686997290 2684623153 Bacteria 3878815
143 2687498597 2687453109 Bacteria 3860091
144 2695628038 2695420354 Bacteria 3922431
145 2698323760 2695420987 Bacteria 6152737
146 2705993464 2703719227 Bacteria 5631989
147 2712197588 2711768088 Bacteria 3195027
148 2717916249 2716884898 Bacteria 3928789
149 2721504800 2718218445 Bacteria 5113413
150 2738814288 2738541295 Bacteria 5730091
151 2738840285 2738541299 Bacteria 4020721
152 2739156231 2738541358 Bacteria 5932299
153 2739210830 2738543006 Bacteria 5904091
154 2739230484 2738543010 Bacteria 5583595
155 2739270064 2738543017 Bacteria 4271950
156 2757565717 2757320391 Bacteria 4746095
157 2777761362 2775507177 Bacteria 4384303
158 2777838807 2775507192 Bacteria 4622234
159 2793184510 2791355222 Bacteria 5898266
160 2808869240 2808606364 Bacteria 4465927
161 2809057058 2808606399 Bacteria 4021018
162 2812316482 2811994870 Bacteria 3776934
163 2816862774 2816332186 Bacteria 5331395
164 2817480528 2816332295 Bacteria 4352468
165 2819579433 2818991443 Bacteria 6598732
166 2819709440 2818991465 Bacteria 5388835
167 2819723551 2818991468 Bacteria 3723169
168 2823528463 2823526263 Bacteria 3765752
169 2842684303 2842682962 Bacteria 5589973
170 2842884309 2842882022 Bacteria 6158489
171 2849144269 2849139964 Bacteria 5613304
172 2857461298 2857460504 Bacteria 5194327
173 2857469923 2857465823 Bacteria 6772595
174 2857473953 2857472729 Bacteria 6568124
175 2857582508 2857581216 Bacteria 5522813
176 2857587438 2857586860 Bacteria 4354574
177 2857591742 2857591370 Bacteria 6569758
178 2860839909 2860837431 Bacteria 4202080
179 2864997832 2864997549 Bacteria 5139696
180 2865003667 2865002811 Bacteria 6333767
181 2877770942 2877768649 Bacteria 3957164
182 2880171807 2880169592 Bacteria 3900066
183 2888581147 2888578766 Bacteria 6743310
184 2889050174 2889049205 Bacteria 7524325
185 2889297193 2889295896 Bacteria 4704906
186 2897112032 2897109615 Bacteria 4009619
187 2904118269 2904113452 Bacteria 7796941
188 2904524662 2904524088 Bacteria 5887454
189 2904561897 2904560550 Bacteria 4029838
190 2908668332 2908665501 Bacteria 3678115
191 2915601072 2915597211 Bacteria 6475886
192 2915607323 2915606848 Bacteria 6032732
193 2916974352 2916971899 Bacteria 4250608
194 2919096101 2919093281 Bacteria 3660974
195 2919146742 2919143609 Bacteria 6219228
196 2919415250 2919414237 Bacteria 5429133
197 2919518665 2919517244 Bacteria 5858162
198 2919723033 2919720352 Bacteria 5986006
199 2919728181 2919726948 Bacteria 3696050
200 2925331703 2925326138 Bacteria 9652120
201 2928096440 2928093941 Bacteria 5965005
202 2929006185 2929004312 Bacteria 5678476
203 2929186216 2929183550 Bacteria 6377511
204 2929208687 2929206907 Bacteria 5918291
205 2929234695 2929233124 Bacteria 5948380
206 2936341590 2936340661 Bacteria 5139038
207 2936367203 2936361878 Bacteria 5632809
208 2938918869 2938917290 Bacteria 5914775
209 2947428241 2947426588 Bacteria 5357194
210 2954774021 2954773129 Bacteria 3741715
211 2956898056 2956897341 Bacteria 5447711
212 2960320656 2960319331 Bacteria 5502575
213 2960380728 2960375949 Bacteria 5361395
214 2962293181 2962290636 Bacteria 4072939
215 2965762734 2965761152 Bacteria 5806513
216 2969139192 2969136845 Bacteria 3923176
217 2969143389 2969141011 Bacteria 4118468
218 2969767157 2969765954 Bacteria 4216713
219 2969773528 2969770375 Bacteria 4271280
220 2971895587 2971893375 Bacteria 3929648
221 2977256793 2977254563 Bacteria 4828420
222 2979085166 2979083700 Bacteria 5894929
223 2980126876 2980125574 Bacteria 5567337
224 2980494924 2980492589 Bacteria 4072961
225 2981285671 2981284811 Bacteria 4641497
226 2981290618 2981289755 Bacteria 4641509
227 2981980759 2981980479 Bacteria 4641628
228 2981985637 2981985349 Bacteria 4641497
229 2984530079 2984527788 Bacteria 5288478
230 2984536186 2984532647 Bacteria 5288506
231 2990277668 2990275345 Bacteria 4887158
232 3001897987 3001892409 Bacteria 6328293
233 3006828823 3006826541 Bacteria 4678913
234 3006860876 3006858327 Bacteria 4317835
235 3006881412 3006879489 Bacteria 4064221
236 3006975668 3006973921 Bacteria 4423788
237 3006981572 3006978542 Bacteria 5328100
238 8002323734 8002317523 Bacteria 8051857
239 8022622664 8022621104 Bacteria 5241040
240 8022633642 8022630665 Bacteria 3886130
241 8022657419 8022653035 Bacteria 4035078
242 8022798128 8022792930 Bacteria 5693794
243 8022897981 8022893055 Bacteria 5300455
244 8022917164 8022914991 Bacteria 5584517
245 8022949639 8022948649 Bacteria 5366783
246 8023442451 8023438354 Bacteria 5779374
247 8023447953 8023444577 Bacteria 5661597
248 8046998805 8046991243 Bacteria 8497463
249 8051955472 8051952484 Bacteria 3926774
250 8052176814 8052174270 Bacteria 3881265
251 8054281451 8054280661 Bacteria 4232245
252 8054798230 8054795415 Bacteria 9785225
253 8055635642 8055632911 Bacteria 5283357
254 8057478303 8057473075 Bacteria 5892720
255 8057584250 8057582654 Bacteria 5218944
256 8057635203 8057632132 Bacteria 4726859
257 8057739528 8057733483 Bacteria 6578323
258 8057978915 8057977335 Bacteria 5694872
259 Ga0307408_100003759
260 JGI25159J45721_1001979
261 JGI25159J45721_1002835
262 JGI25159J45721_1023214
263 JGI25151J46595_10000006
264 JGI25151J46595_10001503
265 JGI25151J46595_10003114
266 JGI25151J46595_10018218
267 JGI25151J46595_10018371
268 JGI25151J46595_10018711
269 JGI25151J46595_10046573
270 JGI25151J46595_10047202
271 JGI25151J46595_10063276
272 Ga0006562J51391_1001638
273 Ga0006562J51391_1002928
274 Ga0055532_1000079
275 Ga0055535_1002274
276 Ga0055536_1012859
277 Ga0055541_1000137
278 Ga0055541_1001770
279 Ga0065704_10139052
280 Ga0070714_100354217
281 Ga0105251_10184797
282 Ga0105244_10014371
283 Ga0105244_10106819
284 Ga0105244_10143394
285 Ga0105244_10189894
286 Ga0105244_10305072
287 Ga0105250_10006358
288 Ga0105250_10024676
289 Ga0105250_10222260
290 Ga0105246_10031067
291 Ga0105246_10063310
292 Ga0157371_10004789
293 Ga0209566_100015
294 Ga0209566_100090
295 Ga0209147_100014
296 Ga0209147_102160
297 Ga0209130_1001340
298 Ga0209130_1001398
299 Ga0209130_1007443
300 Ga0209676_1000940
301 Ga0209025_1000001
302 Ga0209025_1000041
303 Ga0209025_1000258
304 Ga0209025_1000939
305 Ga0209025_1004262
306 Ga0209025_1011014
307 Ga0209025_1011409
308 Ga0209025_1012709
309 Ga0209025_1015620
310 Ga0209025_1016719
311 Ga0209025_1018936
312 Ga0209025_1023591
313 Ga0209025_1044580
314 Ga0209025_1087119
315 Ga0207696_1004771
316 Ga0207696_1004940
317 Ga0207655_1000925
318 Ga0207655_1085883
319 Ga0207713_1040017
320 Ga0207692_10168714
321 Ga0209974_10021717
322 Ga0237817_10045
323 Ga0268256_1004568
324 Ga0307408_100191593
325 Ga0307409_100002268
326 Ga0307409_100159674
327 Ga0307416_100217688
328 Ga0316582_0260986
329 Ga0316584_0230970
330 Ga0395899_0139561
331 Ga0395899_0142126
332 Ga0395898_0742174
333 Ga0237819_00041
334 Ga0237819_01629
335 Ga0439439_0001770
336 Ga0439433_0001512
337 Ga0439449_0001454
338 Ga0439462_0001231
339 Ga0439462_0010972
340 Ga0466969_0001178
341 Ga0466961_0015707
342 Ga0453684_0768446
343 Ga0466968_0017368
344 Ga0466959_0005960
345 Ga0466958_0183502
346 Ga0466967_0040389
347 Ga0466967_0623525
348 Ga0495606_0059941
349 Ga0495654_0088629
350 Ga0495661_0104026
351 Ga0495657_0425138
352 Ga0495626_0022075
353 Ga0496100_0511517
354 Ga0496101_0320061
355 Ga0496102_0397585
356 Ga0496102_0415517
357 Ga0496110_0000627
358 Ga0496110_0390681
359 Ga0496111_0005012
360 Ga0496112_0266339
361 Ga0496116_0012778
362 Ga0496122_0029974
363 Ga0496122_0066768
364 Ga0496124_0000657
365 Ga0496125_0002232
366 Ga0496125_0002336
367 Ga0496125_0039500
368 Ga0501306_006483
369 Ga0501290_008285
370 Ga0501312_029764
371 Ga0501315_014415
372 Ga0501315_022514
373 Ga0501208_000290
374 Ga0501217_001824
375 Ga0501217_009523
376 Ga0501275_032666
377 2511179966
378 2511700060
379 2512635843
380 2524186236
381 2540607224
382 2545556746
383 2553391673
384 2555467464
385 2556064683
386 2578930996
387 2595087731
388 2595315577
389 2631984342
390 2644703990
391 2644708683
392 2644715968
393 2644724162
394 2644740638
395 2651532061
396 2672336768
397 2673823519
398 2674419165
399 2685149420
400 2686997290
401 2687498597
402 2695628038
403 2698323760
404 2705993464
405 2712197588
406 2717916249
407 2721504800
408 2738814288
409 2738840285
410 2739156231
411 2739210830
412 2739230484
413 2739270064
414 2757565717
415 2777761362
416 2777838807
417 2793184510
418 2808869240
419 2809057058
420 2812316482
421 2816862774
422 2817480528
423 2819579433
424 2819709440
425 2819723551
426 2823528463
427 2842684303
428 2842884309
429 2849144269
430 2857461298
431 2857469923
432 2857473953
433 2857582508
434 2857587438
435 2857591742
436 2860839909
437 2864997832
438 2865003667
439 2877770942
440 2880171807
441 2888581147
442 2889050174
443 2889297193
444 2897112032
445 2904118269
446 2904524662
447 2904561897
448 2908668332
449 2915601072
450 2915607323
451 2916974352
452 2919096101
453 2919146742
454 2919415250
455 2919518665
456 2919723033
457 2919728181
458 2925331703
459 2928096440
460 2929006185
461 2929186216
462 2929208687
463 2929234695
464 2936341590
465 2936367203
466 2938918869
467 2947428241
468 2954774021
469 2956898056
470 2960320656
471 2960380728
472 2962293181
473 2965762734
474 2969139192
475 2969143389
476 2969767157
477 2969773528
478 2971895587
479 2977256793
480 2979085166
481 2980126876
482 2980494924
483 2981285671
484 2981290618
485 2981980759
486 2981985637
487 2984530079
488 2984536186
489 2990277668
490 3001897987
491 3006828823
492 3006860876
493 3006881412
494 3006975668
495 3006981572
496 8002323734
497 8022622664
498 8022633642
499 8022657419
500 8022798128
501 8022897981
502 8022917164
503 8022949639
504 8023442451
505 8023447953
506 8046998805
507 8051955472
508 8052176814
509 8054281451
510 8054798230
511 8055635642
512 8057478303
513 8057584250
514 8057635203
515 8057739528
516 8057978915

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02224

Cytidylate_kin

Cytidylate kinase

47

261

0.99

PF13189

Cytidylate_kin2

Cytidylate kinase-like family

46

228

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
1kdt-assembly1.cif.gz_A cytidine monophosphate kinase from e.coli in complex with 2',3'-dideoxy-cytidine monophosphate 0.9651 4 221
2feo-assembly1.cif.gz_A mutant r188m of the cytidine monophosphate kinase from e. coli complexed with dcmp 0.9525 5 221
2h92-assembly3.cif.gz_C crystal structure of staphylococcus aureus cytidine monophosphate kinase in complex with cytidine-5'-monophosphate 0.9517 5 221
3r20-assembly1.cif.gz_A crystal structure of cytidylate kinase from mycobacterium smegmatis 0.9514 5 218
3akc-assembly1.cif.gz_A crystal structure of cmp kinase in complex with cdp and adp from thermus thermophilus hb8 0.9438 3 220
ID Description Score Start End Superfamily
af_Q2FYF5_1_183_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9544 39 222 3.40.50.300
2h92C00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9517 5 221 3.40.50.300
af_Q2FYF5_1_183_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9393 39 222 3.40.50.300
2h92C00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9389 5 221 3.40.50.300
4dieB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9304 5 221 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A0R2ALX8-F1-model_v4 Cytidylate kinase (CK) (EC 2.7.4.25) (Cytidine monophosphate kinase) (CMP kinase) 0.9938 3 221 GO:0005524
GO:0005829
GO:0006220
GO:0015949
GO:0036430
GO:0036431
AF-A0A420VF27-F1-model_v4 (d)CMP kinase (EC 2.7.4.25) 0.9896 4 141 GO:0005524
GO:0036430
GO:0036431
AF-A0A2N0F551-F1-model_v4 deleted 0.989 1 223
AF-A0A1H4L3A3-F1-model_v4 Cytidylate kinase (CK) (EC 2.7.4.25) (Cytidine monophosphate kinase) (CMP kinase) 0.9883 3 222 GO:0005524
GO:0005829
GO:0006220
GO:0015949
GO:0036430
GO:0036431
AF-A0A7C1K9F5-F1-model_v4 Cytidylate kinase (CK) (EC 2.7.4.25) (Cytidine monophosphate kinase) (CMP kinase) 0.9871 4 220 GO:0004127
GO:0005524
GO:0005829
GO:0006220
GO:0015949

Map