F365683

General Info

Members Datasets Scaffolds Average Seq Length
255 195 510 392

Family's Representative Sequence

Representative Sequence 3300011119|Ga0105246_10013558|Ga0105246_100135582
Length 457
Sequence MPHQCTTAAAVRRWDRYARAMLAAMAALIMLAAETAAQELRRAQTREEVAPRQGGEPIMAIVSIKSQRVTLYDADGWILRAPVSTGTTEYETPAGVFAIVQKKKDHRSNMYDDAWMPHMQRITWNGIALHGGPLPGHAASHGCVRLPFGFAERLFDRTRIGMRVIIAPYDTTPVPFSHPALLVPNAEALAAARVRAEPLVREAAEAARTASLRKLELSKKRADAEFEAAEKAPIGARVDQTRLQAEGLKRRAAELGKQFDAMSAEARQRLDASNSAKDTAEAAEIKKADTGRAADQANLSLEPVSIYISRATQKPVRDGGEVFDASIEASVKIHNPGKPIGTHVFTAMAREGAGLRWSAVTIDGGDDAGSALDRITIPQEVLDRVAPTALPRSSIIVSDEPLSAETNYRTEFVAVLSNHPQGGFVTRDRSGDILSADDNVSGEAGYEPMSGIRGISD

Samples

Sample ID Description Type Environment
1 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
44 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
46 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
47 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
48 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
49 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
57 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
58 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
63 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
65 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
94 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
95 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
96 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
97 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
98 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
99 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
100 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
101 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
102 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
103 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
104 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
105 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
106 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
107 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
108 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
109 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
110 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
111 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
112 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
113 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
114 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
115 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
116 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
117 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
118 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
119 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
120 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
121 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
122 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
123 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
124 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
125 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
126 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
127 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
128 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
129 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
130 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
131 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
132 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
133 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
134 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
135 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
136 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
137 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
138 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
139 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
140 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
141 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
142 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
143 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
144 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
145 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
146 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
147 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
148 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
149 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
150 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
151 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
152 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
153 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
154 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
155 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
156 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
157 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
158 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
159 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
160 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
161 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
162 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
163 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
164 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
165 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
166 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
167 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
168 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
169 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
170 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
171 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
172 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
173 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
174 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
175 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
176 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
177 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
178 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
179 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
180 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
181 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
182 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
183 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
184 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
185 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
186 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
187 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
188 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
189 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
190 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
191 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
192 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
193 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
194 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
195 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.76
Nodule 0
Rhizoplane 9.8
Rhizosphere 70.98
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105246_10013558 3300011119 Bacteria 5112
2 JGI25406J46586_10000027 3300003203 Bacteria 70625
3 Ga0070658_10016844 3300005327 Bacteria 5850
4 Ga0070676_10089094 3300005328 Bacteria 1887
5 Ga0070683_100147269 3300005329 Bacteria 2232
6 Ga0068869_100029023 3300005334 Bacteria 3871
7 Ga0070680_100041653 3300005336 Bacteria 3723
8 Ga0070660_100078777 3300005339 Bacteria 2584
9 Ga0070668_100048730 3300005347 Bacteria 3258
10 Ga0070669_100061301 3300005353 Bacteria 2763
11 Ga0070675_100084693 3300005354 Bacteria 2647
12 Ga0070673_100113495 3300005364 Bacteria 2250
13 Ga0070714_100022409 3300005435 Bacteria 5180
14 Ga0070714_100023413 3300005435 Bacteria 5073
15 Ga0070701_10021648 3300005438 Bacteria 3071
16 Ga0070663_100018574 3300005455 Bacteria 4564
17 Ga0070678_100042626 3300005456 Bacteria 3227
18 Ga0070662_100031943 3300005457 Bacteria 3698
19 Ga0070662_100137452 3300005457 Bacteria 1891
20 Ga0070681_10004759 3300005458 Bacteria 13009
21 Ga0070699_100020442 3300005518 Bacteria 5709
22 Ga0070679_100002856 3300005530 Bacteria 15694
23 Ga0070679_100093090 3300005530 Bacteria 3001
24 Ga0068853_100008128 3300005539 Bacteria 8419
25 Ga0068853_100024096 3300005539 Bacteria 5100
26 Ga0068853_100035728 3300005539 Bacteria 4222
27 Ga0068853_100053531 3300005539 Bacteria 3476
28 Ga0070696_100018144 3300005546 Bacteria 4754
29 Ga0070665_100010926 3300005548 Bacteria 9181
30 Ga0070665_100070309 3300005548 Bacteria 3507
31 Ga0070704_100012750 3300005549 Bacteria 5199
32 Ga0068855_100020369 3300005563 Bacteria 7956
33 Ga0068857_100146473 3300005577 Bacteria 2137
34 Ga0068857_100223434 3300005577 Bacteria 1721
35 Ga0068856_100050768 3300005614 Bacteria 4089
36 Ga0068852_100012285 3300005616 Bacteria 6494
37 Ga0068852_100117587 3300005616 Bacteria 2428
38 Ga0068859_100062379 3300005617 Bacteria 3757
39 Ga0068864_100020699 3300005618 Bacteria 5505
40 Ga0068861_100035707 3300005719 Bacteria 3684
41 Ga0068861_100090110 3300005719 Bacteria 2418
42 Ga0068851_10000380 3300005834 Bacteria 20167
43 Ga0068863_100133243 3300005841 Bacteria 2373
44 Ga0068858_100062082 3300005842 Bacteria 3455
45 Ga0068860_100108261 3300005843 Bacteria 2656
46 Ga0068860_100194357 3300005843 Bacteria 1964
47 Ga0068862_100068194 3300005844 Bacteria 3068
48 Ga0081455_10009479 3300005937 Bacteria 10012
49 Ga0081539_10000051 3300005985 Bacteria 268337
50 Ga0075365_10000179 3300006038 Bacteria 20618
51 Ga0075368_10016097 3300006042 Bacteria 2783
52 Ga0075364_10000528 3300006051 Bacteria 19470
53 Ga0075367_10000464 3300006178 Bacteria 15104
54 Ga0075367_10004216 3300006178 Bacteria 6977
55 Ga0075367_10060134 3300006178 Bacteria 2264
56 Ga0075369_10000358 3300006186 Bacteria 13613
57 Ga0097621_100008551 3300006237 Bacteria 7376
58 Ga0075370_10051076 3300006353 Bacteria 2345
59 Ga0068871_100235456 3300006358 Bacteria 1590
60 Ga0075430_100010440 3300006846 Bacteria 7861
61 Ga0097620_100062378 3300006931 Bacteria 3757
62 Ga0105250_10024675 3300009092 Bacteria 2422
63 Ga0105250_10047693 3300009092 Bacteria 1718
64 Ga0105240_10080090 3300009093 Bacteria 4017
65 Ga0105240_10278298 3300009093 Bacteria 1923
66 Ga0105241_10000075 3300009174 Bacteria 75421
67 Ga0105241_10037032 3300009174 Bacteria 3674
68 Ga0105248_10226707 3300009177 Bacteria 2103
69 Ga0105237_10119832 3300009545 Bacteria 2625
70 Ga0105249_10003491 3300009553 Bacteria 13603
71 Ga0105249_10124320 3300009553 Bacteria 2455
72 Ga0105239_10197102 3300010375 Bacteria 2255
73 Ga0157378_10020023 3300013297 Bacteria 5883
74 Ga0163162_10031336 3300013306 Bacteria 5274
75 Ga0163163_10010140 3300014325 Bacteria 8453
76 Ga0163163_10020476 3300014325 Bacteria 6229
77 Ga0157376_10088863 3300014969 Bacteria 2670
78 Ga0209677_100648 3300025253 Bacteria 18413
79 Ga0209148_1000305 3300025254 Bacteria 70375
80 Ga0209233_1001055 3300025261 Bacteria 11511
81 Ga0209455_1001286 3300025272 Bacteria 11718
82 Ga0209455_1004149 3300025272 Bacteria 4849
83 Ga0209758_1002532 3300025297 Bacteria 18445
84 Ga0209758_1003171 3300025297 Bacteria 15419
85 Ga0209758_1020353 3300025297 Bacteria 3143
86 Ga0207656_10004250 3300025321 Bacteria 4988
87 Ga0207688_10020852 3300025901 Bacteria 3578
88 Ga0207688_10024422 3300025901 Bacteria 3314
89 Ga0207647_10034355 3300025904 Bacteria 3238
90 Ga0207643_10023365 3300025908 Bacteria 3408
91 Ga0207705_10001012 3300025909 Bacteria 22856
92 Ga0207654_10000037 3300025911 Bacteria 108727
93 Ga0207707_10001049 3300025912 Bacteria 26514
94 Ga0207695_10000283 3300025913 Bacteria 126108
95 Ga0207695_10000286 3300025913 Bacteria 125310
96 Ga0207671_10043950 3300025914 Bacteria 3303
97 Ga0207657_10031197 3300025919 Bacteria 4830
98 Ga0207687_10011141 3300025927 Bacteria 5874
99 Ga0207664_10060136 3300025929 Bacteria 3028
100 Ga0207644_10052589 3300025931 Bacteria 2928
101 Ga0207706_10113348 3300025933 Bacteria 2385
102 Ga0207711_10050043 3300025941 Bacteria 3577
103 Ga0207667_10004824 3300025949 Bacteria 16489
104 Ga0207667_10090336 3300025949 Bacteria 3165
105 Ga0207712_10019927 3300025961 Bacteria 4387
106 Ga0207668_10127719 3300025972 Bacteria 1936
107 Ga0207658_10192628 3300025986 Bacteria 1696
108 Ga0207677_10037726 3300026023 Bacteria 3161
109 Ga0207639_10003341 3300026041 Bacteria 10793
110 Ga0207702_10000019 3300026078 Bacteria 211843
111 Ga0207702_10042813 3300026078 Bacteria 3800
112 Ga0207641_10177517 3300026088 Bacteria 1948
113 Ga0207674_10073134 3300026116 Bacteria 3442
114 Ga0207674_10152039 3300026116 Bacteria 2271
115 Ga0207675_100012560 3300026118 Bacteria 7911
116 Ga0207683_10017328 3300026121 Bacteria 6139
117 Ga0207683_10061334 3300026121 Bacteria 3309
118 Ga0209813_10018086 3300027866 Bacteria 1943
119 Ga0268265_10025109 3300028380 Bacteria 4225
120 Ga0307513_10003570 3300031456 Bacteria 21046
121 Ga0307508_10134477 3300031616 Bacteria 2075
122 Ga0265314_10002822 3300031711 Bacteria 17324
123 Ga0307414_10096657 3300032004 Bacteria 2211
124 Ga0307510_10050682 3300033180 Bacteria 4401
125 Ga0373934_0018223 3300035086 Bacteria 2686
126 Ga0373945_0015104 3300035116 Bacteria 2595
127 Ga0373953_0005642 3300035117 Bacteria 4077
128 Ga0373954_0004070 3300035118 Bacteria 6263
129 Ga0373954_0004217 3300035118 Bacteria 6170
130 Ga0373956_0005618 3300035119 Bacteria 5015
131 Ga0373957_0016932 3300035120 Bacteria 2531
132 Ga0373943_0014652 3300035170 Bacteria 3554
133 Ga0373943_0016477 3300035170 Bacteria 3371
134 Ga0373955_0002274 3300035172 Bacteria 8341
135 Ga0373955_0036711 3300035172 Bacteria 2602
136 Ga0373924_0011409 3300035410 Bacteria 3300
137 Ga0373931_0031558 3300035691 Bacteria 2735
138 Ga0373931_0032683 3300035691 Bacteria 2694
139 Ga0373935_0039845 3300035692 Bacteria 2946
140 Ga0373927_0009632 3300035695 Bacteria 6480
141 Ga0373933_0003988 3300035724 Bacteria 8137
142 Ga0373937_0011654 3300036401 Bacteria 7716
143 Ga0373937_0049018 3300036401 Bacteria 3867
144 Ga0373937_0051236 3300036401 Bacteria 3783
145 Ga0373937_0078529 3300036401 Bacteria 3050
146 Ga0373925_0040874 3300037068 Bacteria 3435
147 Ga0395900_0124590 3300037418 Bacteria 2642
148 Ga0395898_0218907 3300037466 Bacteria 1816
149 Ga0436364_0104705 3300037853 Bacteria 2825
150 Ga0436363_0293341 3300039450 Bacteria 1891
151 Ga0466967_0167743 3300045976 Bacteria 2064
152 Ga0495617_006519 3300046452 Bacteria 4087
153 Ga0495590_0025137 3300046457 Bacteria 2095
154 Ga0495629_0003123 3300046459 Bacteria 12555
155 Ga0495651_0023812 3300046462 Bacteria 4761
156 Ga0495653_0038858 3300046463 Bacteria 3733
157 Ga0495580_0048193 3300046472 Bacteria 3018
158 Ga0495582_0037034 3300046473 Bacteria 2684
159 Ga0495662_0061285 3300046476 Bacteria 1817
160 Ga0495585_0054837 3300046492 Bacteria 2203
161 Ga0495608_0000522 3300046511 Bacteria 26344
162 Ga0495616_0045742 3300046513 Bacteria 2213
163 Ga0495620_0067727 3300046515 Bacteria 1468
164 Ga0495628_0009735 3300046516 Bacteria 8199
165 Ga0495652_0021745 3300046529 Bacteria 5702
166 Ga0495665_0066687 3300046531 Bacteria 1899
167 Ga0495640_0010711 3300046533 Bacteria 7074
168 Ga0495587_0021598 3300046536 Bacteria 3970
169 Ga0495667_0002487 3300046559 Bacteria 12313
170 Ga0495668_0059652 3300046616 Bacteria 2105
171 Ga0495634_0013081 3300046642 Bacteria 6001
172 Ga0495635_0002151 3300046663 Bacteria 13373
173 Ga0495635_0028013 3300046663 Bacteria 3917
174 Ga0495661_0076987 3300046665 Bacteria 1934
175 Ga0495657_0000917 3300046675 Bacteria 26032
176 Ga0495599_0003009 3300046678 Bacteria 9812
177 Ga0495623_0020185 3300046679 Bacteria 4306
178 Ga0495646_0021260 3300046680 Bacteria 4102
179 Ga0495600_0001295 3300046809 Bacteria 13823
180 Ga0495600_0072181 3300046809 Bacteria 2255
181 Ga0495604_0010712 3300047317 Bacteria 7277
182 Ga0495676_0091800 3300047321 Bacteria 2268
183 Ga0495680_0013068 3300047322 Bacteria 7261
184 Ga0495684_0007587 3300047471 Bacteria 8394
185 Ga0495684_0023775 3300047471 Bacteria 4712
186 Ga0495593_0027539 3300047673 Bacteria 3128
187 Ga0495602_0035560 3300048088 Bacteria 4645
188 Ga0495602_0038793 3300048088 Bacteria 4397
189 Ga0496100_0113747 3300048903 Bacteria 1884
190 Ga0496101_0182599 3300048904 Bacteria 1616
191 Ga0496102_0111717 3300048905 Bacteria 2548
192 Ga0496103_0020991 3300048906 Bacteria 3928
193 Ga0496104_0006853 3300048907 Bacteria 10044
194 Ga0496104_0055596 3300048907 Bacteria 3743
195 Ga0496104_0139192 3300048907 Bacteria 2332
196 Ga0496104_0144738 3300048907 Bacteria 2282
197 Ga0496106_0004627 3300048909 Bacteria 10207
198 Ga0496106_0006103 3300048909 Bacteria 8913
199 Ga0496106_0049244 3300048909 Bacteria 3174
200 Ga0496107_0029611 3300048910 Bacteria 3896
201 Ga0496107_0121635 3300048910 Bacteria 1923
202 Ga0496108_0001916 3300048911 Bacteria 16653
203 Ga0496109_0002403 3300048912 Bacteria 15675
204 Ga0496110_0006713 3300048913 Bacteria 9150
205 Ga0496110_0026351 3300048913 Bacteria 4973
206 Ga0496111_0000953 3300048914 Bacteria 15828
207 Ga0496112_0002442 3300048915 Bacteria 14981
208 Ga0496112_0029770 3300048915 Bacteria 5283
209 Ga0496112_0216769 3300048915 Bacteria 1870
210 Ga0496113_0056094 3300048916 Bacteria 2956
211 Ga0496114_0020038 3300048917 Bacteria 5425
212 Ga0496115_0005868 3300048918 Bacteria 8946
213 Ga0496115_0119798 3300048918 Bacteria 2165
214 Ga0496116_0076410 3300048919 Bacteria 2098
215 Ga0496117_0049071 3300048920 Bacteria 3007
216 Ga0496117_0066484 3300048920 Bacteria 2445
217 Ga0496118_0011715 3300048921 Bacteria 8524
218 Ga0496119_0049315 3300048922 Bacteria 2604
219 Ga0496121_0004128 3300048924 Bacteria 19885
220 Ga0496121_0018435 3300048924 Bacteria 7037
221 Ga0496121_0025379 3300048924 Bacteria 5625
222 Ga0496121_0110965 3300048924 Bacteria 2092
223 Ga0496124_0003294 3300048927 Bacteria 19907
224 Ga0496124_0069266 3300048927 Bacteria 2929
225 Ga0496125_0036774 3300048928 Bacteria 4268
226 Ga0496126_0004933 3300048929 Bacteria 15574
227 Ga0496126_0210548 3300048929 Bacteria 1637
228 Ga0501037_0087864 3300049573 Bacteria 2249
229 Ga0501038_0070891 3300049574 Bacteria 2957
230 Ga0501048_0019709 3300049582 Bacteria 4946
231 Ga0501072_0054184 3300049588 Bacteria 3159
232 Ga0501075_0153931 3300049591 Bacteria 1753
233 Ga0501076_0078650 3300049592 Bacteria 2647
234 Ga0501083_0020497 3300049744 Bacteria 4600
235 nmdc:mga00v17_842_c1 3300050491 Bacteria 16632
236 nmdc:mga06z11_1036_c1 3300050494 Bacteria 10128
237 nmdc:mga07m45_46740_c1 3300050496 Bacteria 2432
238 nmdc:mga07m45_7670_c1 3300050496 Bacteria 5521
239 nmdc:mga0qj67_4_c1 3300050509 Bacteria 176711
240 nmdc:mga0sz30_5189_c1 3300050516 Bacteria 4772
241 Ga0495601_0008682 3300053077 Bacteria 5995
242 Ga0495601_0032947 3300053077 Bacteria 3227
243 Ga0495612_0037424 3300053078 Bacteria 1970
244 Ga0500635_0003175 3300053080 Bacteria 4110
245 Ga0495595_0001426 3300053084 Bacteria 9293
246 Ga0495595_0098329 3300053084 Bacteria 1410
247 Ga0495619_0010126 3300053085 Bacteria 5936
248 Ga0495619_0020771 3300053085 Bacteria 4187
249 Ga0500572_000093 3300053111 Bacteria 29132
250 Ga0500559_0000242 3300053136 Bacteria 43285
251 Ga0500603_000349 3300053150 Bacteria 12065
252 Ga0500616_0000085 3300053153 Bacteria 193192
253 Ga0500616_0006076 3300053153 Bacteria 8009
254 Ga0500616_0007474 3300053153 Bacteria 6931
255 Ga0500596_000624 3300053735 Bacteria 6798
256 Ga0105246_10013558
257 JGI25406J46586_10000027
258 Ga0070658_10016844
259 Ga0070676_10089094
260 Ga0070683_100147269
261 Ga0068869_100029023
262 Ga0070680_100041653
263 Ga0070660_100078777
264 Ga0070668_100048730
265 Ga0070669_100061301
266 Ga0070675_100084693
267 Ga0070673_100113495
268 Ga0070714_100022409
269 Ga0070714_100023413
270 Ga0070701_10021648
271 Ga0070663_100018574
272 Ga0070678_100042626
273 Ga0070662_100031943
274 Ga0070662_100137452
275 Ga0070681_10004759
276 Ga0070699_100020442
277 Ga0070679_100002856
278 Ga0070679_100093090
279 Ga0068853_100008128
280 Ga0068853_100024096
281 Ga0068853_100035728
282 Ga0068853_100053531
283 Ga0070696_100018144
284 Ga0070665_100010926
285 Ga0070665_100070309
286 Ga0070704_100012750
287 Ga0068855_100020369
288 Ga0068857_100146473
289 Ga0068857_100223434
290 Ga0068856_100050768
291 Ga0068852_100012285
292 Ga0068852_100117587
293 Ga0068859_100062379
294 Ga0068864_100020699
295 Ga0068861_100035707
296 Ga0068861_100090110
297 Ga0068851_10000380
298 Ga0068863_100133243
299 Ga0068858_100062082
300 Ga0068860_100108261
301 Ga0068860_100194357
302 Ga0068862_100068194
303 Ga0081455_10009479
304 Ga0081539_10000051
305 Ga0075365_10000179
306 Ga0075368_10016097
307 Ga0075364_10000528
308 Ga0075367_10000464
309 Ga0075367_10004216
310 Ga0075367_10060134
311 Ga0075369_10000358
312 Ga0097621_100008551
313 Ga0075370_10051076
314 Ga0068871_100235456
315 Ga0075430_100010440
316 Ga0097620_100062378
317 Ga0105250_10024675
318 Ga0105250_10047693
319 Ga0105240_10080090
320 Ga0105240_10278298
321 Ga0105241_10000075
322 Ga0105241_10037032
323 Ga0105248_10226707
324 Ga0105237_10119832
325 Ga0105249_10003491
326 Ga0105249_10124320
327 Ga0105239_10197102
328 Ga0157378_10020023
329 Ga0163162_10031336
330 Ga0163163_10010140
331 Ga0163163_10020476
332 Ga0157376_10088863
333 Ga0209677_100648
334 Ga0209148_1000305
335 Ga0209233_1001055
336 Ga0209455_1001286
337 Ga0209455_1004149
338 Ga0209758_1002532
339 Ga0209758_1003171
340 Ga0209758_1020353
341 Ga0207656_10004250
342 Ga0207688_10020852
343 Ga0207688_10024422
344 Ga0207647_10034355
345 Ga0207643_10023365
346 Ga0207705_10001012
347 Ga0207654_10000037
348 Ga0207707_10001049
349 Ga0207695_10000283
350 Ga0207695_10000286
351 Ga0207671_10043950
352 Ga0207657_10031197
353 Ga0207687_10011141
354 Ga0207664_10060136
355 Ga0207644_10052589
356 Ga0207706_10113348
357 Ga0207711_10050043
358 Ga0207667_10004824
359 Ga0207667_10090336
360 Ga0207712_10019927
361 Ga0207668_10127719
362 Ga0207658_10192628
363 Ga0207677_10037726
364 Ga0207639_10003341
365 Ga0207702_10000019
366 Ga0207702_10042813
367 Ga0207641_10177517
368 Ga0207674_10073134
369 Ga0207674_10152039
370 Ga0207675_100012560
371 Ga0207683_10017328
372 Ga0207683_10061334
373 Ga0209813_10018086
374 Ga0268265_10025109
375 Ga0307513_10003570
376 Ga0307508_10134477
377 Ga0265314_10002822
378 Ga0307414_10096657
379 Ga0307510_10050682
380 Ga0373934_0018223
381 Ga0373945_0015104
382 Ga0373953_0005642
383 Ga0373954_0004070
384 Ga0373954_0004217
385 Ga0373956_0005618
386 Ga0373957_0016932
387 Ga0373943_0014652
388 Ga0373943_0016477
389 Ga0373955_0002274
390 Ga0373955_0036711
391 Ga0373924_0011409
392 Ga0373931_0031558
393 Ga0373931_0032683
394 Ga0373935_0039845
395 Ga0373927_0009632
396 Ga0373933_0003988
397 Ga0373937_0011654
398 Ga0373937_0049018
399 Ga0373937_0051236
400 Ga0373937_0078529
401 Ga0373925_0040874
402 Ga0395900_0124590
403 Ga0395898_0218907
404 Ga0436364_0104705
405 Ga0436363_0293341
406 Ga0466967_0167743
407 Ga0495617_006519
408 Ga0495590_0025137
409 Ga0495629_0003123
410 Ga0495651_0023812
411 Ga0495653_0038858
412 Ga0495580_0048193
413 Ga0495582_0037034
414 Ga0495662_0061285
415 Ga0495585_0054837
416 Ga0495608_0000522
417 Ga0495616_0045742
418 Ga0495620_0067727
419 Ga0495628_0009735
420 Ga0495652_0021745
421 Ga0495665_0066687
422 Ga0495640_0010711
423 Ga0495587_0021598
424 Ga0495667_0002487
425 Ga0495668_0059652
426 Ga0495634_0013081
427 Ga0495635_0002151
428 Ga0495635_0028013
429 Ga0495661_0076987
430 Ga0495657_0000917
431 Ga0495599_0003009
432 Ga0495623_0020185
433 Ga0495646_0021260
434 Ga0495600_0001295
435 Ga0495600_0072181
436 Ga0495604_0010712
437 Ga0495676_0091800
438 Ga0495680_0013068
439 Ga0495684_0007587
440 Ga0495684_0023775
441 Ga0495593_0027539
442 Ga0495602_0035560
443 Ga0495602_0038793
444 Ga0496100_0113747
445 Ga0496101_0182599
446 Ga0496102_0111717
447 Ga0496103_0020991
448 Ga0496104_0006853
449 Ga0496104_0055596
450 Ga0496104_0139192
451 Ga0496104_0144738
452 Ga0496106_0004627
453 Ga0496106_0006103
454 Ga0496106_0049244
455 Ga0496107_0029611
456 Ga0496107_0121635
457 Ga0496108_0001916
458 Ga0496109_0002403
459 Ga0496110_0006713
460 Ga0496110_0026351
461 Ga0496111_0000953
462 Ga0496112_0002442
463 Ga0496112_0029770
464 Ga0496112_0216769
465 Ga0496113_0056094
466 Ga0496114_0020038
467 Ga0496115_0005868
468 Ga0496115_0119798
469 Ga0496116_0076410
470 Ga0496117_0049071
471 Ga0496117_0066484
472 Ga0496118_0011715
473 Ga0496119_0049315
474 Ga0496121_0004128
475 Ga0496121_0018435
476 Ga0496121_0025379
477 Ga0496121_0110965
478 Ga0496124_0003294
479 Ga0496124_0069266
480 Ga0496125_0036774
481 Ga0496126_0004933
482 Ga0496126_0210548
483 Ga0501037_0087864
484 Ga0501038_0070891
485 Ga0501048_0019709
486 Ga0501072_0054184
487 Ga0501075_0153931
488 Ga0501076_0078650
489 Ga0501083_0020497
490 nmdc:mga00v17_842_c1
491 nmdc:mga06z11_1036_c1
492 nmdc:mga07m45_46740_c1
493 nmdc:mga07m45_7670_c1
494 nmdc:mga0qj67_4_c1
495 nmdc:mga0sz30_5189_c1
496 Ga0495601_0008682
497 Ga0495601_0032947
498 Ga0495612_0037424
499 Ga0500635_0003175
500 Ga0495595_0001426
501 Ga0495595_0098329
502 Ga0495619_0010126
503 Ga0495619_0020771
504 Ga0500572_000093
505 Ga0500559_0000242
506 Ga0500603_000349
507 Ga0500616_0000085
508 Ga0500616_0006076
509 Ga0500616_0007474
510 Ga0500596_000624

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03734

YkuD

L,D-transpeptidase catalytic domain

57

166

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5lb1-assembly2.cif.gz_B crystal structure of the mycobacterium tuberculosis l,d-transpeptidase-2 (ldtmt2) bc-module with thionitrobenzoate (tnb) adduct at the active site cysteine-354 0.8835 32 143
5uwv-assembly1.cif.gz_B crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.8806 36 144
5uwv-assembly5.cif.gz_C crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.8729 32 144
4z7a-assembly1.cif.gz_A structural and biochemical characterization of a non-functionally redundant m. tuberculosis (3,3) l,d-transpeptidase, ldtmt5. 0.8718 36 144
5uwv-assembly2.cif.gz_A crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.8677 32 144
ID Description Score Start End Superfamily
6d51A02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8851 36 143 2.40.440.10
6iywC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8583 36 143 2.40.440.10
5uwvD03 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8501 32 144 2.40.440.10
4jmxA02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8467 36 143 2.40.440.10
4a1iC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8367 33 144 2.40.440.10
ID Description Score Start End GO Terms
AF-A0A0Q4K0S9-F1-model_v4 deleted 0.9408 36 143
AF-A0A2M7LDJ8-F1-model_v4 deleted 0.9361 31 143
AF-A0A2D9RG72-F1-model_v4 L,D-transpeptidase 0.935 34 144 GO:0005576
GO:0008360
GO:0016740
GO:0018104
GO:0071555
GO:0071972
AF-A0A386C8V4-F1-model_v4 L,D-transpeptidase 0.9345 42 144 GO:0005576
GO:0008360
GO:0016740
GO:0018104
GO:0071555
GO:0071972
AF-A0A0Q8RT77-F1-model_v4 L,D-TPase catalytic domain-containing protein 0.9339 31 143 GO:0005576
GO:0008360
GO:0016740
GO:0018104
GO:0071555
GO:0071972

Map