F364681

General Info

Members Datasets Scaffolds Average Seq Length
254 190 508 335

Family's Representative Sequence

Representative Sequence 3300005440|Ga0070705_100004176|Ga0070705_1000041764
Length 383
Sequence MRVSVSNRARGLTLGVMVRRMAVKALSRTNPNDDDGATRAGGERHVTIDEVALAAGVSAATVSRVVNGNPNVRVDAKRGVERAIAKLGYVPNPAARSLATRRSDYIGVVIPEPTSLLFGDPFFPRLLRGIGAALSSRDLQLVLLMPQSPREESRVERYLTAGHVDGALLVSLHGDDPLPAHLAKRRVPAVIGGRPPRGAAVSYVDVDNEEGARSAVEHLVARGRRRIATITGPLDMAPSIDRLTGYRQALGAAGVQADEDLQAVGDFTQQGGASAMRRILEARPDVDAVFAASDLMAAGAMQVLRAAGRRIPEDVAIAGFDDSPVAEMTDPPLTSVRQPIEEMGREMVRLLLEHTADPGSVPRKVILATELVPRRSSEGVARR

Samples

Sample ID Description Type Environment
1 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
48 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
65 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
66 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
70 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
75 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
76 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
77 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
78 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
83 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
84 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
85 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
86 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
87 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
88 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
89 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
90 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
95 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
96 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
97 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
104 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
105 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
106 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
107 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300049131 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049132 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300049133 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
113 3300049160 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
114 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049162 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
116 3300049163 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_B_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
118 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300049530 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
121 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
123 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
124 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300049536 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300049540 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300049544 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300049546 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_B_4_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300049547 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_A_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
132 3300049548 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
133 3300049549 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
134 3300049551 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
135 3300049552 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
136 3300049553 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_A_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
137 3300049554 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_A_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
138 3300049556 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
139 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
140 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
141 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
142 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
143 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
144 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
145 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
148 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
149 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
150 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
151 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
152 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
153 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
154 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
155 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
156 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
157 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
158 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
159 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
160 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
161 3300053144 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 endosphere Metagenome Endosphere
162 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
163 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
164 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
165 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
166 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
167 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
168 2643221732 Bacillus sp. Root239 Isolate Unclassified
169 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
170 2738541295 Bacillus sp. OK085 Isolate Unclassified
171 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
172 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
173 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
174 2842682962 Bacillus sp. R-72492 Isolate Unclassified
175 2849139964 Bacillus sp. R-71875 Isolate Unclassified
176 2857581216 Bacillus sp. R-71922 Isolate Unclassified
177 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
178 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
179 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
180 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
181 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
182 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
183 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
184 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
185 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
186 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
187 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
188 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
189 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
190 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.08
Metatranscriptomes 20.87
Isolates 9.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.48
Nodule 0
Rhizoplane 12.2
Rhizosphere 66.93
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070705_100004176 3300005440 Bacteria 7056
2 JGI25151J46595_10000731 3300003187 Bacteria 27264
3 JGI25151J46595_10003780 3300003187 Bacteria 8213
4 JGI25406J46586_10002166 3300003203 Bacteria 9283
5 Ga0006562J51391_1008841 3300003578 Bacteria 1330
6 Ga0070683_100438339 3300005329 Bacteria 1247
7 Ga0070690_100125954 3300005330 Bacteria 1725
8 Ga0068869_100010961 3300005334 Bacteria 5935
9 Ga0070680_100146332 3300005336 Bacteria 1982
10 Ga0070692_10010170 3300005345 Bacteria 4272
11 Ga0070659_100330238 3300005366 Bacteria 1276
12 Ga0070703_10000829 3300005406 Bacteria 10055
13 Ga0070713_100006835 3300005436 Bacteria 7950
14 Ga0070713_100037098 3300005436 Bacteria 3939
15 Ga0070710_10000040 3300005437 Bacteria 60294
16 Ga0070705_100011772 3300005440 Bacteria 4426
17 Ga0070694_100014420 3300005444 Bacteria 4947
18 Ga0070694_100053981 3300005444 Bacteria 2721
19 Ga0070694_100145591 3300005444 Bacteria 1725
20 Ga0070694_100157315 3300005444 Bacteria 1664
21 Ga0070708_100017077 3300005445 Bacteria 6043
22 Ga0070708_100049231 3300005445 Bacteria 3728
23 Ga0070681_10030247 3300005458 Bacteria 5432
24 Ga0070706_100047946 3300005467 Bacteria 3943
25 Ga0070706_100177318 3300005467 Bacteria 1990
26 Ga0070697_100046812 3300005536 Bacteria 3506
27 Ga0070697_100086555 3300005536 Bacteria 2586
28 Ga0068853_100309026 3300005539 Bacteria 1463
29 Ga0070695_100013929 3300005545 Bacteria 4840
30 Ga0070696_100023125 3300005546 Bacteria 4224
31 Ga0070693_100210328 3300005547 Bacteria 1269
32 Ga0068855_100227482 3300005563 Bacteria 2090
33 Ga0068864_100048882 3300005618 Bacteria 3637
34 Ga0068866_10018709 3300005718 Bacteria 3139
35 Ga0068858_100177409 3300005842 Bacteria 2011
36 Ga0068860_100166322 3300005843 Bacteria 2129
37 Ga0068862_100102284 3300005844 Bacteria 2508
38 Ga0081539_10003042 3300005985 Bacteria 21704
39 Ga0070717_10001071 3300006028 Bacteria 18381
40 Ga0075428_100000889 3300006844 Bacteria 31489
41 Ga0075430_100021755 3300006846 Bacteria 5451
42 Ga0075431_100050484 3300006847 Bacteria 4289
43 Ga0075431_100103725 3300006847 Bacteria 2935
44 Ga0075433_10022080 3300006852 Bacteria 5341
45 Ga0075434_100026857 3300006871 Bacteria 5647
46 Ga0075434_100113318 3300006871 Bacteria 2724
47 Ga0075429_100023140 3300006880 Bacteria 5388
48 Ga0105245_10025082 3300009098 Bacteria 5242
49 Ga0114129_10001285 3300009147 Bacteria 33447
50 Ga0105243_10001025 3300009148 Bacteria 25775
51 Ga0105243_10174392 3300009148 Bacteria 1865
52 Ga0105242_10004530 3300009176 Bacteria 10786
53 Ga0105249_10070029 3300009553 Bacteria 3238
54 Ga0105239_10110236 3300010375 Bacteria 3051
55 Ga0105246_10003696 3300011119 Bacteria 9260
56 Ga0157374_10111253 3300013296 Bacteria 2634
57 Ga0157378_10015476 3300013297 Bacteria 6682
58 Ga0163163_10040345 3300014325 Bacteria 4558
59 Ga0163163_10187481 3300014325 Bacteria 2116
60 Ga0157377_10001668 3300014745 Bacteria 9676
61 Ga0209676_1000663 3300025292 Bacteria 49326
62 Ga0209025_1034779 3300025294 Bacteria 2291
63 Ga0207713_1001085 3300025735 Bacteria 23381
64 Ga0207653_10000403 3300025885 Bacteria 18869
65 Ga0207692_10002303 3300025898 Bacteria 7328
66 Ga0207684_10017168 3300025910 Bacteria 6212
67 Ga0207646_10002348 3300025922 Bacteria 22371
68 Ga0207700_10020034 3300025928 Bacteria 4532
69 Ga0207700_10025298 3300025928 Bacteria 4120
70 Ga0207686_10254863 3300025934 Bacteria 1284
71 Ga0207711_10098765 3300025941 Bacteria 2580
72 Ga0207689_10058184 3300025942 Bacteria 3179
73 Ga0207667_10243634 3300025949 Bacteria 1840
74 Ga0207676_10403700 3300026095 Bacteria 1278
75 Ga0207676_10470555 3300026095 Bacteria 1188
76 Ga0268265_10111200 3300028380 Bacteria 2237
77 Ga0268264_10269527 3300028381 Bacteria 1590
78 Ga0307515_10003071 3300028794 Bacteria 35360
79 Ga0316177_1204561 3300030731 Bacteria 2491
80 Ga0316177_1209610 3300030731 Bacteria 2280
81 Ga0316176_1091277 3300030732 Bacteria 1573
82 Ga0307509_10000052 3300031507 Bacteria 164947
83 Ga0307509_10064105 3300031507 Bacteria 3867
84 Ga0307509_10105058 3300031507 Bacteria 2847
85 Ga0307509_10260317 3300031507 Bacteria 1511
86 Ga0307408_100006522 3300031548 Bacteria 7734
87 Ga0307508_10047786 3300031616 Bacteria 3814
88 Ga0307516_10025257 3300031730 Bacteria 6051
89 Ga0307405_10037663 3300031731 Bacteria 2909
90 Ga0307409_100072462 3300031995 Bacteria 2743
91 Ga0307416_100004579 3300032002 Bacteria 8357
92 Ga0307416_100142510 3300032002 Bacteria 2181
93 Ga0307411_10028782 3300032005 Bacteria 3383
94 Ga0307507_10081639 3300033179 Bacteria 2841
95 Ga0373941_0008244 3300035115 Bacteria 2582
96 Ga0373941_0011400 3300035115 Bacteria 2296
97 Ga0373933_0014850 3300035724 Bacteria 4334
98 Ga0372808_007854 3300036459 Bacteria 1467
99 Ga0439434_0008080 3300042435 Bacteria 3086
100 Ga0466972_0021111 3300044658 Bacteria 3250
101 Ga0466965_0005465 3300044683 Bacteria 5729
102 Ga0466965_0012389 3300044683 Bacteria 4009
103 Ga0466965_0031351 3300044683 Bacteria 2592
104 Ga0466967_0184648 3300045976 Bacteria 1969
105 Ga0495603_0033445 3300046455 Bacteria 3094
106 Ga0495664_0187423 3300046477 Bacteria 1254
107 Ga0495584_0048976 3300046491 Bacteria 2130
108 Ga0495585_0074954 3300046492 Bacteria 1840
109 Ga0495630_0041483 3300046517 Bacteria 3437
110 Ga0495676_0045290 3300047321 Bacteria 3582
111 Ga0495683_0020597 3300047323 Bacteria 3401
112 Ga0496100_0001526 3300048903 Bacteria 11352
113 Ga0496101_0001813 3300048904 Bacteria 12871
114 Ga0496101_0065990 3300048904 Bacteria 2639
115 Ga0496102_0005549 3300048905 Bacteria 10715
116 Ga0496102_0019830 3300048905 Bacteria 5927
117 Ga0496102_0023286 3300048905 Bacteria 5498
118 Ga0496102_0105090 3300048905 Bacteria 2627
119 Ga0496102_0133967 3300048905 Bacteria 2321
120 Ga0496103_0018678 3300048906 Bacteria 4159
121 Ga0496103_0041996 3300048906 Bacteria 2812
122 Ga0496104_0020498 3300048907 Bacteria 6060
123 Ga0496105_0000067 3300048908 Bacteria 82959
124 Ga0496105_0012307 3300048908 Bacteria 6775
125 Ga0496106_0039608 3300048909 Bacteria 3529
126 Ga0496106_0075740 3300048909 Bacteria 2578
127 Ga0496107_0000213 3300048910 Bacteria 30470
128 Ga0496107_0147313 3300048910 Bacteria 1741
129 Ga0496108_0000809 3300048911 Bacteria 24294
130 Ga0496109_0000475 3300048912 Bacteria 34137
131 Ga0496109_0027601 3300048912 Bacteria 5070
132 Ga0496110_0001968 3300048913 Bacteria 15269
133 Ga0496110_0006114 3300048913 Bacteria 9488
134 Ga0496110_0026864 3300048913 Bacteria 4929
135 Ga0496111_0001824 3300048914 Bacteria 12531
136 Ga0496111_0006732 3300048914 Bacteria 7482
137 Ga0496111_0012382 3300048914 Bacteria 5773
138 Ga0496112_0033808 3300048915 Bacteria 4972
139 Ga0496112_0085115 3300048915 Bacteria 3128
140 Ga0496113_0009088 3300048916 Bacteria 6511
141 Ga0496113_0112300 3300048916 Bacteria 2122
142 Ga0496113_0221995 3300048916 Bacteria 1506
143 Ga0496116_0003324 3300048919 Bacteria 15984
144 Ga0496119_0011353 3300048922 Bacteria 7389
145 Ga0496120_0029798 3300048923 Bacteria 3327
146 Ga0496122_0008405 3300048925 Bacteria 11149
147 Ga0496125_0026405 3300048928 Bacteria 5293
148 Ga0496126_0004918 3300048929 Bacteria 15596
149 Ga0501306_006813 3300049127 Bacteria 1353
150 Ga0501306_016618 3300049127 Bacteria 990
151 Ga0501341_01383 3300049131 Bacteria 1203
152 Ga0501343_002926 3300049132 Bacteria 1239
153 Ga0501344_00317 3300049133 Bacteria 1911
154 Ga0501304_002858 3300049160 Bacteria 1229
155 Ga0501305_006358 3300049161 Bacteria 1465
156 Ga0501305_010151 3300049161 Bacteria 1252
157 Ga0501307_009452 3300049162 Bacteria 1115
158 Ga0501342_00364 3300049163 Bacteria 1190
159 Ga0501342_00596 3300049163 Bacteria 1008
160 Ga0501311_006551 3300049527 Bacteria 1315
161 Ga0501311_010641 3300049527 Bacteria 1120
162 Ga0501311_013562 3300049527 Bacteria 1030
163 Ga0501312_005741 3300049528 Bacteria 1522
164 Ga0501312_010392 3300049528 Bacteria 1245
165 Ga0501312_011919 3300049528 Bacteria 1189
166 Ga0501312_014427 3300049528 Bacteria 1110
167 Ga0501313_008530 3300049529 Bacteria 1142
168 Ga0501314_004473 3300049530 Bacteria 1160
169 Ga0501315_000327 3300049531 Bacteria 3122
170 Ga0501315_007400 3300049531 Bacteria 1250
171 Ga0501316_000795 3300049532 Bacteria 2412
172 Ga0501316_005848 3300049532 Bacteria 1289
173 Ga0501317_002577 3300049533 Bacteria 1729
174 Ga0501317_004909 3300049533 Bacteria 1411
175 Ga0501317_009507 3300049533 Bacteria 1143
176 Ga0501318_002228 3300049534 Bacteria 1652
177 Ga0501318_005489 3300049534 Bacteria 1260
178 Ga0501318_005797 3300049534 Bacteria 1240
179 Ga0501318_012670 3300049534 Bacteria 970
180 Ga0501320_006336 3300049536 Bacteria 1106
181 Ga0501321_004398 3300049537 Bacteria 1345
182 Ga0501321_006159 3300049537 Bacteria 1211
183 Ga0501323_009420 3300049539 Bacteria 1150
184 Ga0501323_013216 3300049539 Bacteria 1018
185 Ga0501324_004482 3300049540 Bacteria 1112
186 Ga0501328_00760 3300049544 Bacteria 1164
187 Ga0501330_001230 3300049546 Bacteria 1291
188 Ga0501330_002876 3300049546 Bacteria 999
189 Ga0501331_00085 3300049547 Bacteria 2853
190 Ga0501331_01369 3300049547 Bacteria 1177
191 Ga0501332_01638 3300049548 Bacteria 1192
192 Ga0501333_000092 3300049549 Bacteria 2894
193 Ga0501335_000063 3300049551 Bacteria 4472
194 Ga0501335_001933 3300049551 Bacteria 1645
195 Ga0501336_002096 3300049552 Bacteria 1261
196 Ga0501337_001880 3300049553 Bacteria 1240
197 Ga0501338_00463 3300049554 Bacteria 1834
198 Ga0501338_01810 3300049554 Bacteria 1180
199 Ga0501340_001769 3300049556 Bacteria 1198
200 Ga0501068_0270538 3300049584 Bacteria 1085
201 Ga0501070_0207023 3300049586 Bacteria 1611
202 Ga0501075_0167565 3300049591 Bacteria 1676
203 Ga0501208_005749 3300049655 Bacteria 1542
204 Ga0501079_0019194 3300049741 Bacteria 5224
205 Ga0501270_001727 3300049767 Bacteria 2146
206 Ga0501045_0140667 3300049824 Bacteria 1795
207 nmdc:mga05p37_1216_c1 3300050507 Bacteria 29803
208 nmdc:mga09592_2004_c1 3300050508 Bacteria 16423
209 nmdc:mga0qj67_854_c1 3300050509 Bacteria 20922
210 nmdc:mga06r32_1180_c1 3300050510 Bacteria 23556
211 nmdc:mga06r32_440_c3 3300050510 Bacteria 11959
212 nmdc:mga06r32_83567_c1 3300050510 Bacteria 3111
213 nmdc:mga0n895_32639_c1 3300050512 Bacteria 4998
214 nmdc:mga0a205_17807_c1 3300050515 Bacteria 6667
215 Ga0500578_0022867 3300053086 Bacteria 4015
216 Ga0500647_0069384 3300053091 Bacteria 1695
217 Ga0500566_0002481 3300053094 Bacteria 10964
218 Ga0500640_000056 3300053095 Bacteria 17684
219 Ga0500554_000004 3300053102 Bacteria 62632
220 Ga0500572_012435 3300053111 Bacteria 2086
221 Ga0500595_000552 3300053119 Bacteria 22402
222 Ga0500597_038398 3300053120 Bacteria 2004
223 Ga0500614_000009 3300053123 Bacteria 49421
224 Ga0500614_002581 3300053123 Bacteria 4016
225 Ga0500585_040624 3300053144 Bacteria 1640
226 Ga0500603_001565 3300053150 Bacteria 5180
227 Ga0500636_0022874 3300053177 Bacteria 3694
228 Ga0500637_0170953 3300053178 Bacteria 1249
229 Ga0500661_021547 3300055283 Bacteria 1144
230 Ga0590071_000570 3300059421 Bacteria 10643
231 Ga0590075_001227 3300059424 Bacteria 6479
232 2644726803 2643221732 Bacteria 5756404
233 2672337398 2671180330 Bacteria 5521719
234 2738815542 2738541295 Bacteria 5730091
235 2816510658 2816332139 Bacteria 9138787
236 2816862179 2816332186 Bacteria 5331395
237 2819708967 2818991465 Bacteria 5388835
238 2842684910 2842682962 Bacteria 5589973
239 2849141465 2849139964 Bacteria 5613304
240 2857584111 2857581216 Bacteria 5522813
241 2895436831 2895427314 Bacteria 13147766
242 2904524175 2904524088 Bacteria 5887454
243 2936362144 2936361878 Bacteria 5632809
244 2960319571 2960319331 Bacteria 5502575
245 2960381218 2960375949 Bacteria 5361395
246 2977256261 2977254563 Bacteria 4828420
247 2990277149 2990275345 Bacteria 4887158
248 3006429102 3006425503 Bacteria 6491253
249 3006976254 3006973921 Bacteria 4423788
250 8022898499 8022893055 Bacteria 5300455
251 8022950151 8022948649 Bacteria 5366783
252 8055071326 8055066027 Bacteria 9479577
253 8055176724 8055172936 Bacteria 9305943
254 8057635819 8057632132 Bacteria 4726859
255 Ga0070705_100004176
256 JGI25151J46595_10000731
257 JGI25151J46595_10003780
258 JGI25406J46586_10002166
259 Ga0006562J51391_1008841
260 Ga0070683_100438339
261 Ga0070690_100125954
262 Ga0068869_100010961
263 Ga0070680_100146332
264 Ga0070692_10010170
265 Ga0070659_100330238
266 Ga0070703_10000829
267 Ga0070713_100006835
268 Ga0070713_100037098
269 Ga0070710_10000040
270 Ga0070705_100011772
271 Ga0070694_100014420
272 Ga0070694_100053981
273 Ga0070694_100145591
274 Ga0070694_100157315
275 Ga0070708_100017077
276 Ga0070708_100049231
277 Ga0070681_10030247
278 Ga0070706_100047946
279 Ga0070706_100177318
280 Ga0070697_100046812
281 Ga0070697_100086555
282 Ga0068853_100309026
283 Ga0070695_100013929
284 Ga0070696_100023125
285 Ga0070693_100210328
286 Ga0068855_100227482
287 Ga0068864_100048882
288 Ga0068866_10018709
289 Ga0068858_100177409
290 Ga0068860_100166322
291 Ga0068862_100102284
292 Ga0081539_10003042
293 Ga0070717_10001071
294 Ga0075428_100000889
295 Ga0075430_100021755
296 Ga0075431_100050484
297 Ga0075431_100103725
298 Ga0075433_10022080
299 Ga0075434_100026857
300 Ga0075434_100113318
301 Ga0075429_100023140
302 Ga0105245_10025082
303 Ga0114129_10001285
304 Ga0105243_10001025
305 Ga0105243_10174392
306 Ga0105242_10004530
307 Ga0105249_10070029
308 Ga0105239_10110236
309 Ga0105246_10003696
310 Ga0157374_10111253
311 Ga0157378_10015476
312 Ga0163163_10040345
313 Ga0163163_10187481
314 Ga0157377_10001668
315 Ga0209676_1000663
316 Ga0209025_1034779
317 Ga0207713_1001085
318 Ga0207653_10000403
319 Ga0207692_10002303
320 Ga0207684_10017168
321 Ga0207646_10002348
322 Ga0207700_10020034
323 Ga0207700_10025298
324 Ga0207686_10254863
325 Ga0207711_10098765
326 Ga0207689_10058184
327 Ga0207667_10243634
328 Ga0207676_10403700
329 Ga0207676_10470555
330 Ga0268265_10111200
331 Ga0268264_10269527
332 Ga0307515_10003071
333 Ga0316177_1204561
334 Ga0316177_1209610
335 Ga0316176_1091277
336 Ga0307509_10000052
337 Ga0307509_10064105
338 Ga0307509_10105058
339 Ga0307509_10260317
340 Ga0307408_100006522
341 Ga0307508_10047786
342 Ga0307516_10025257
343 Ga0307405_10037663
344 Ga0307409_100072462
345 Ga0307416_100004579
346 Ga0307416_100142510
347 Ga0307411_10028782
348 Ga0307507_10081639
349 Ga0373941_0008244
350 Ga0373941_0011400
351 Ga0373933_0014850
352 Ga0372808_007854
353 Ga0439434_0008080
354 Ga0466972_0021111
355 Ga0466965_0005465
356 Ga0466965_0012389
357 Ga0466965_0031351
358 Ga0466967_0184648
359 Ga0495603_0033445
360 Ga0495664_0187423
361 Ga0495584_0048976
362 Ga0495585_0074954
363 Ga0495630_0041483
364 Ga0495676_0045290
365 Ga0495683_0020597
366 Ga0496100_0001526
367 Ga0496101_0001813
368 Ga0496101_0065990
369 Ga0496102_0005549
370 Ga0496102_0019830
371 Ga0496102_0023286
372 Ga0496102_0105090
373 Ga0496102_0133967
374 Ga0496103_0018678
375 Ga0496103_0041996
376 Ga0496104_0020498
377 Ga0496105_0000067
378 Ga0496105_0012307
379 Ga0496106_0039608
380 Ga0496106_0075740
381 Ga0496107_0000213
382 Ga0496107_0147313
383 Ga0496108_0000809
384 Ga0496109_0000475
385 Ga0496109_0027601
386 Ga0496110_0001968
387 Ga0496110_0006114
388 Ga0496110_0026864
389 Ga0496111_0001824
390 Ga0496111_0006732
391 Ga0496111_0012382
392 Ga0496112_0033808
393 Ga0496112_0085115
394 Ga0496113_0009088
395 Ga0496113_0112300
396 Ga0496113_0221995
397 Ga0496116_0003324
398 Ga0496119_0011353
399 Ga0496120_0029798
400 Ga0496122_0008405
401 Ga0496125_0026405
402 Ga0496126_0004918
403 Ga0501306_006813
404 Ga0501306_016618
405 Ga0501341_01383
406 Ga0501343_002926
407 Ga0501344_00317
408 Ga0501304_002858
409 Ga0501305_006358
410 Ga0501305_010151
411 Ga0501307_009452
412 Ga0501342_00364
413 Ga0501342_00596
414 Ga0501311_006551
415 Ga0501311_010641
416 Ga0501311_013562
417 Ga0501312_005741
418 Ga0501312_010392
419 Ga0501312_011919
420 Ga0501312_014427
421 Ga0501313_008530
422 Ga0501314_004473
423 Ga0501315_000327
424 Ga0501315_007400
425 Ga0501316_000795
426 Ga0501316_005848
427 Ga0501317_002577
428 Ga0501317_004909
429 Ga0501317_009507
430 Ga0501318_002228
431 Ga0501318_005489
432 Ga0501318_005797
433 Ga0501318_012670
434 Ga0501320_006336
435 Ga0501321_004398
436 Ga0501321_006159
437 Ga0501323_009420
438 Ga0501323_013216
439 Ga0501324_004482
440 Ga0501328_00760
441 Ga0501330_001230
442 Ga0501330_002876
443 Ga0501331_00085
444 Ga0501331_01369
445 Ga0501332_01638
446 Ga0501333_000092
447 Ga0501335_000063
448 Ga0501335_001933
449 Ga0501336_002096
450 Ga0501337_001880
451 Ga0501338_00463
452 Ga0501338_01810
453 Ga0501340_001769
454 Ga0501068_0270538
455 Ga0501070_0207023
456 Ga0501075_0167565
457 Ga0501208_005749
458 Ga0501079_0019194
459 Ga0501270_001727
460 Ga0501045_0140667
461 nmdc:mga05p37_1216_c1
462 nmdc:mga09592_2004_c1
463 nmdc:mga0qj67_854_c1
464 nmdc:mga06r32_1180_c1
465 nmdc:mga06r32_440_c3
466 nmdc:mga06r32_83567_c1
467 nmdc:mga0n895_32639_c1
468 nmdc:mga0a205_17807_c1
469 Ga0500578_0022867
470 Ga0500647_0069384
471 Ga0500566_0002481
472 Ga0500640_000056
473 Ga0500554_000004
474 Ga0500572_012435
475 Ga0500595_000552
476 Ga0500597_038398
477 Ga0500614_000009
478 Ga0500614_002581
479 Ga0500585_040624
480 Ga0500603_001565
481 Ga0500636_0022874
482 Ga0500637_0170953
483 Ga0500661_021547
484 Ga0590071_000570
485 Ga0590075_001227
486 2644726803
487 2672337398
488 2738815542
489 2816510658
490 2816862179
491 2819708967
492 2842684910
493 2849141465
494 2857584111
495 2895436831
496 2904524175
497 2936362144
498 2960319571
499 2960381218
500 2977256261
501 2990277149
502 3006429102
503 3006976254
504 8022898499
505 8022950151
506 8055071326
507 8055176724
508 8057635819

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

47

92

0.99

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

216

377

0.93

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

103

374

0.9

PF13407

Peripla_BP_4

Periplasmic binding protein domain

117

358

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
1sxg-assembly3.cif.gz_F structural studies on the apo transcription factor form b. megaterium 0.9781 62 332
2fep-assembly1.cif.gz_A-2 structure of truncated ccpa in complex with p-ser-hpr and sulfate ions 0.9692 60 332
1sxg-assembly3.cif.gz_F structural studies on the apo transcription factor form b. megaterium 0.9676 62 332
2fep-assembly1.cif.gz_A-2 structure of truncated ccpa in complex with p-ser-hpr and sulfate ions 0.9658 60 332
2o20-assembly1.cif.gz_A crystal structure of transcription regulator ccpa of lactococcus lactis 0.9522 59 332
ID Description Score Start End Superfamily
1sxgB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9634 60 323 3.40.50.2300
3brqA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9582 160 289 3.40.50.2300
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9574 3 51 1.10.260.40
1sxgB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9565 60 323 3.40.50.2300
3kkeB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9558 162 289 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A143I3C7-F1-model_v4 deleted 0.9661 171 330
AF-A0A7C3S133-F1-model_v4 LacI family transcriptional regulator 0.9628 170 330 GO:0000976
GO:0003700
AF-A0A4Q6DTD8-F1-model_v4 deleted 0.9526 176 332
AF-A0A519H1W0-F1-model_v4 LacI family transcriptional regulator 0.9496 170 330 GO:0000976
GO:0003700
AF-A0A090RF42-F1-model_v4 deleted 0.9493 197 332

Map