F363367

General Info

Members Datasets Scaffolds Average Seq Length
252 207 504 321

Family's Representative Sequence

Representative Sequence 3300035118|Ga0373954_0111638|Ga0373954_0111638_72_1148
Length 358
Sequence LALRFTIAAAPHSGTLPQINSKTAQEESGLNLRLRPALISFLVISAVLAAARTSTRAAEFPSRPIKFVVPYPPGGPTDILARVVADFLGKDLRQSTLVENKPGAQGAIGAEAVARAEPDGYTLLVAAGSIIVQNPLLYKKLSYDPARDLQMLALMTDFPVVMEVHPSVPAKTIAEFVAYARQNPGKLNFGSAGTGGTIHLAGEMFKRMAGIEMIHVPYKGAAPALTDLLSGNIQVMFDSVSTALPPVRSGMTRALGVSSAQRFPALPDVPTIAESGYPDYLVSVWYGVAAPARLPDGVAQALAASLNRAMNDDRFRASLEQIGYTVFRPRNAAAITEFIEADRARWSGVIKAMNISLD

Samples

Sample ID Description Type Environment
1 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
2 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
3 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
29 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
83 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
84 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
85 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
86 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
87 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
88 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
89 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
90 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
91 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
96 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
97 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
98 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
99 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
102 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
103 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
104 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
105 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
106 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
107 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
108 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
109 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
110 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
111 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
112 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
113 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
114 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
115 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
116 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
117 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
118 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
119 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
120 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
121 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
122 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
123 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
124 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
125 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
126 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
127 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
128 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
129 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
130 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
131 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
132 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
133 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
134 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
135 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
136 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
137 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
138 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
139 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
140 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
141 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
142 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
143 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
144 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
147 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
148 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
149 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
150 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
151 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
153 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
154 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
155 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
156 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
157 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
158 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
159 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
160 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
161 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
162 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
163 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
164 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
165 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
166 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
167 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
168 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
169 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
170 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
171 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
172 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
173 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
174 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
175 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
176 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
177 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
178 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
179 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
180 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
181 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
182 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
183 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
184 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
185 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
186 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
187 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
188 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
189 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
190 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
191 2508501050 Microvirga lupini Lut6 Isolate Nodule
192 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
193 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
194 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
195 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
196 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
197 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
198 2773857925 Microvirga vignae BR3299 Isolate Unclassified
199 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
200 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
201 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
202 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
203 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
204 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
205 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
206 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
207 2928084124 Variovorax paradoxus 1218 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.25
Metatranscriptomes 0
Isolates 6.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25
Nodule 1.59
Rhizoplane 3.17
Rhizosphere 60.32
Stem 0
Stem Tuber 0
Unclassified 2.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373954_0111638 3300035118 Bacteria 1322
2 JGI25404J52841_10022405 3300003659 Bacteria 1365
3 Ga0055540_1000149 3300003792 Bacteria 68747
4 Ga0070658_10002156 3300005327 Bacteria 16510
5 Ga0070666_10162977 3300005335 Bacteria 1559
6 Ga0070680_100052115 3300005336 Bacteria 3340
7 Ga0070680_100148219 3300005336 Bacteria 1969
8 Ga0068868_100372054 3300005338 Bacteria 1228
9 Ga0070660_100170862 3300005339 Bacteria 1756
10 Ga0070691_10010053 3300005341 Bacteria 4311
11 Ga0070692_10074605 3300005345 Bacteria 1815
12 Ga0070674_100034699 3300005356 Bacteria 3372
13 Ga0070688_100174317 3300005365 Bacteria 1487
14 Ga0070714_100125594 3300005435 Bacteria 2287
15 Ga0070681_10002137 3300005458 Bacteria 17962
16 Ga0070679_100004261 3300005530 Bacteria 13201
17 Ga0070672_100264614 3300005543 Bacteria 1451
18 Ga0070665_100309748 3300005548 Bacteria 1582
19 Ga0070704_100068228 3300005549 Bacteria 2571
20 Ga0068855_100051435 3300005563 Bacteria 4853
21 Ga0068856_100490810 3300005614 Bacteria 1249
22 Ga0068859_100011569 3300005617 Bacteria 8873
23 Ga0068862_100228072 3300005844 Bacteria 1689
24 Ga0081455_10002881 3300005937 Bacteria 20244
25 Ga0081455_10005772 3300005937 Bacteria 13496
26 Ga0081455_10042223 3300005937 Bacteria 4003
27 Ga0081538_10117529 3300005981 Bacteria 1287
28 Ga0081540_1000001 3300005983 Bacteria 293507
29 Ga0081540_1000736 3300005983 Bacteria 30169
30 Ga0081539_10005307 3300005985 Bacteria 13254
31 Ga0075365_10023911 3300006038 Bacteria 3848
32 Ga0075365_10030462 3300006038 Bacteria 3456
33 Ga0075368_10096206 3300006042 Bacteria 1214
34 Ga0075363_100000734 3300006048 Bacteria 11140
35 Ga0075363_100089339 3300006048 Bacteria 1694
36 Ga0075364_10019863 3300006051 Bacteria 4223
37 Ga0070716_100147273 3300006173 Bacteria 1510
38 Ga0075362_10053841 3300006177 Bacteria 1807
39 Ga0075362_10090500 3300006177 Bacteria 1420
40 Ga0075367_10006669 3300006178 Bacteria 5853
41 Ga0075367_10024019 3300006178 Bacteria 3435
42 Ga0075367_10024622 3300006178 Bacteria 3396
43 Ga0075369_10000362 3300006186 Bacteria 13572
44 Ga0075366_10005069 3300006195 Bacteria 7122
45 Ga0075366_10036773 3300006195 Bacteria 2887
46 Ga0075370_10108513 3300006353 Bacteria 1610
47 Ga0075428_100276748 3300006844 Bacteria 1806
48 Ga0075431_100000673 3300006847 Bacteria 29218
49 Ga0075433_10017610 3300006852 Bacteria 5924
50 Ga0075434_100021177 3300006871 Bacteria 6318
51 Ga0075429_100000003 3300006880 Bacteria 130377
52 Ga0075436_100141802 3300006914 Bacteria 1689
53 Ga0097620_100011569 3300006931 Bacteria 8873
54 Ga0111539_10078129 3300009094 Bacteria 3894
55 Ga0111539_10587652 3300009094 Bacteria 1297
56 Ga0105245_10700836 3300009098 Bacteria 1046
57 Ga0114129_10007207 3300009147 Bacteria 15824
58 Ga0105243_10100897 3300009148 Bacteria 2396
59 Ga0099796_10004763 3300010159 Bacteria 3316
60 Ga0163162_10168730 3300013306 Bacteria 2313
61 Ga0157372_10531935 3300013307 Bacteria 1370
62 Ga0157375_10180095 3300013308 Unclassified 2264
63 Ga0157376_10201082 3300014969 Bacteria 1833
64 Ga0209564_1000871 3300025295 Bacteria 40145
65 Ga0209564_1032965 3300025295 Bacteria 1548
66 Ga0209050_1000537 3300025298 Bacteria 62966
67 Ga0209051_1000345 3300025303 Bacteria 69229
68 Ga0209257_1002834 3300025304 Bacteria 16262
69 Ga0207688_10212608 3300025901 Bacteria 1162
70 Ga0207645_10217563 3300025907 Bacteria 1259
71 Ga0207707_10002213 3300025912 Bacteria 17582
72 Ga0207695_10044154 3300025913 Bacteria 4743
73 Ga0207646_10195934 3300025922 Bacteria 1824
74 Ga0207681_10185427 3300025923 Bacteria 1588
75 Ga0207659_10253774 3300025926 Bacteria 1428
76 Ga0207700_10157105 3300025928 Bacteria 1885
77 Ga0207664_10122984 3300025929 Bacteria 2174
78 Ga0207670_10167424 3300025936 Bacteria 1645
79 Ga0207691_10276327 3300025940 Bacteria 1446
80 Ga0207667_10024822 3300025949 Bacteria 6573
81 Ga0207678_10002505 3300026067 Bacteria 16717
82 Ga0207674_10057329 3300026116 Bacteria 3949
83 Ga0207675_100026061 3300026118 Bacteria 5441
84 Ga0207683_10212718 3300026121 Unclassified 1760
85 Ga0207428_10027222 3300027907 Bacteria 4762
86 Ga0207428_10067276 3300027907 Bacteria 2821
87 Ga0268266_10212974 3300028379 Unclassified 1773
88 Ga0268265_10521791 3300028380 Bacteria 1123
89 Ga0307405_10117868 3300031731 Bacteria 1811
90 Ga0307407_10222053 3300031903 Bacteria 1278
91 Ga0307412_10312192 3300031911 Bacteria 1247
92 Ga0307416_100371947 3300032002 Bacteria 1455
93 Ga0307414_10039326 3300032004 Bacteria 3185
94 Ga0307414_10117308 3300032004 Bacteria 2039
95 Ga0307411_10335596 3300032005 Bacteria 1226
96 Ga0307507_10051930 3300033179 Bacteria 3939
97 Ga0373926_0104706 3300035083 Bacteria 1060
98 Ga0373940_0001496 3300035088 Bacteria 4244
99 Ga0373945_0099595 3300035116 Bacteria 1136
100 Ga0373953_0100715 3300035117 Bacteria 1215
101 Ga0373954_0145723 3300035118 Bacteria 1156
102 Ga0373956_0007638 3300035119 Bacteria 4358
103 Ga0373957_0006447 3300035120 Bacteria 3698
104 Ga0373955_0064516 3300035172 Bacteria 2030
105 Ga0373935_0040858 3300035692 Bacteria 2912
106 Ga0373927_0055617 3300035695 Bacteria 2559
107 Ga0373937_0032086 3300036401 Bacteria 4762
108 Ga0373937_0051681 3300036401 Bacteria 3767
109 Ga0373937_0055696 3300036401 Bacteria 3631
110 Ga0373925_0028410 3300037068 Bacteria 4098
111 Ga0395905_0048271 3300037471 Bacteria 3990
112 Ga0436365_1004933 3300039437 Bacteria 2080
113 Ga0436365_1913197 3300039437 Bacteria 2264
114 Ga0439465_0001472 3300041413 Bacteria 7631
115 Ga0439445_0000311 3300042004 Bacteria 9444
116 Ga0439449_0001169 3300042007 Bacteria 10300
117 Ga0439458_0049609 3300042157 Bacteria 1034
118 Ga0451576_0036785 3300045051 Bacteria 5187
119 Ga0451576_0212864 3300045051 Bacteria 2018
120 Ga0495592_0009044 3300046454 Bacteria 7487
121 Ga0495592_0203059 3300046454 Bacteria 1336
122 Ga0495638_0012452 3300046460 Bacteria 5829
123 Ga0495638_0013191 3300046460 Bacteria 5637
124 Ga0495651_0194704 3300046462 Bacteria 1423
125 Ga0495653_0005677 3300046463 Bacteria 10189
126 Ga0495653_0232571 3300046463 Bacteria 1233
127 Ga0495650_0001463 3300046471 Bacteria 22653
128 Ga0495582_0170980 3300046473 Bacteria 1237
129 Ga0495664_0002486 3300046477 Bacteria 9915
130 Ga0495608_0120726 3300046511 Bacteria 1681
131 Ga0495610_0011354 3300046512 Bacteria 5454
132 Ga0495610_0027441 3300046512 Bacteria 3025
133 Ga0495618_0006096 3300046514 Bacteria 7313
134 Ga0495628_0011244 3300046516 Bacteria 7575
135 Ga0495630_0244798 3300046517 Bacteria 1370
136 Ga0495631_0000135 3300046518 Bacteria 50021
137 Ga0495652_0032345 3300046529 Bacteria 4575
138 Ga0495654_0064407 3300046530 Bacteria 1752
139 Ga0495640_0010256 3300046533 Bacteria 7249
140 Ga0495587_0026476 3300046536 Bacteria 3536
141 Ga0495622_0008476 3300046557 Bacteria 4760
142 Ga0495667_0013520 3300046559 Bacteria 5523
143 Ga0495667_0085826 3300046559 Bacteria 2043
144 Ga0495635_0005046 3300046663 Bacteria 9181
145 Ga0495588_0018113 3300046674 Bacteria 3430
146 Ga0495657_0022520 3300046675 Bacteria 4511
147 Ga0495623_0028228 3300046679 Bacteria 3610
148 Ga0495646_0051078 3300046680 Bacteria 2503
149 Ga0495658_0117781 3300046683 Bacteria 1603
150 Ga0495613_0239017 3300046689 Bacteria 1270
151 Ga0495670_0098792 3300046691 Bacteria 1501
152 Ga0495671_0133608 3300046692 Bacteria 1210
153 Ga0495589_0159205 3300046794 Bacteria 1076
154 Ga0495660_0069799 3300046810 Bacteria 1867
155 Ga0495604_0040222 3300047317 Bacteria 3672
156 Ga0495674_0016021 3300047319 Bacteria 6995
157 Ga0495675_0010988 3300047444 Bacteria 5675
158 Ga0495684_0326542 3300047471 Bacteria 1095
159 Ga0495686_0093859 3300047472 Bacteria 1819
160 Ga0495602_0024624 3300048088 Bacteria 5838
161 Ga0495626_0019316 3300048091 Bacteria 3410
162 Ga0496101_0036822 3300048904 Bacteria 3467
163 Ga0496102_0076902 3300048905 Bacteria 3071
164 Ga0496107_0139069 3300048910 Unclassified 1795
165 Ga0496114_0131633 3300048917 Unclassified 2160
166 Ga0496116_0001687 3300048919 Bacteria 24198
167 Ga0496117_0154461 3300048920 Bacteria 1353
168 Ga0496117_0175380 3300048920 Bacteria 1239
169 Ga0496119_0080662 3300048922 Bacteria 1876
170 Ga0496121_0053882 3300048924 Bacteria 3366
171 Ga0496122_0086715 3300048925 Bacteria 2153
172 Ga0496122_0130185 3300048925 Bacteria 1601
173 Ga0496123_0008569 3300048926 Bacteria 9371
174 Ga0496124_0179801 3300048927 Bacteria 1629
175 Ga0496125_0000125 3300048928 Bacteria 169979
176 Ga0496125_0000681 3300048928 Bacteria 56691
177 Ga0496125_0008508 3300048928 Bacteria 10731
178 Ga0496125_0028742 3300048928 Bacteria 5012
179 Ga0496126_0277631 3300048929 Bacteria 1389
180 Ga0496126_0350913 3300048929 Bacteria 1207
181 Ga0501037_0020749 3300049573 Bacteria 4851
182 Ga0501039_0304107 3300049575 Bacteria 1254
183 nmdc:mga03683_10774_c1 3300050489 Bacteria 3286
184 nmdc:mga03683_117740_c1 3300050489 Bacteria 1179
185 nmdc:mga00v17_63658_c1 3300050491 Bacteria 2272
186 nmdc:mga0yw44_7186_c1 3300050492 Bacteria 5455
187 nmdc:mga0k408_26618_c1 3300050493 Bacteria 3280
188 nmdc:mga0k408_4288_c1 3300050493 Bacteria 7571
189 nmdc:mga0k408_8237_c1 3300050493 Bacteria 5591
190 nmdc:mga06z11_16850_c1 3300050494 Bacteria 3302
191 nmdc:mga06z11_63707_c1 3300050494 Unclassified 1930
192 nmdc:mga06z11_9603_c1 3300050494 Bacteria 4082
193 nmdc:mga05p37_77_c1 3300050507 Bacteria 86224
194 nmdc:mga09592_355_c1 3300050508 Bacteria 33629
195 nmdc:mga06r32_11402_c1 3300050510 Bacteria 8006
196 nmdc:mga06r32_19481_c1 3300050510 Bacteria 6229
197 nmdc:mga06r32_34053_c1 3300050510 Bacteria 4802
198 nmdc:mga08y16_15535_c1 3300050511 Bacteria 8006
199 nmdc:mga0n895_180904_c1 3300050512 Bacteria 2140
200 nmdc:mga0n895_39952_c1 3300050512 Bacteria 4556
201 nmdc:mga0rr50_22362_c1 3300050513 Bacteria 4338
202 nmdc:mga0a205_15669_c1 3300050515 Bacteria 7085
203 Ga0495601_0023245 3300053077 Bacteria 3808
204 Ga0495612_0004910 3300053078 Bacteria 5532
205 Ga0500610_0000152 3300053079 Bacteria 20704
206 Ga0500643_029504 3300053087 Bacteria 1687
207 Ga0500646_0017202 3300053090 Bacteria 1894
208 Ga0500647_0026624 3300053091 Bacteria 2728
209 Ga0500651_0008263 3300053093 Bacteria 6116
210 Ga0500651_0013503 3300053093 Bacteria 4978
211 Ga0500566_0005775 3300053094 Bacteria 7353
212 Ga0500641_0001884 3300053096 Bacteria 7447
213 Ga0500650_0000214 3300053098 Bacteria 14010
214 Ga0500556_0000125 3300053104 Bacteria 65777
215 Ga0500562_053194 3300053108 Bacteria 1084
216 Ga0500569_024008 3300053109 Bacteria 1645
217 Ga0500592_011764 3300053116 Bacteria 1400
218 Ga0500642_0000194 3300053130 Bacteria 24955
219 Ga0500652_000210 3300053131 Bacteria 22474
220 Ga0500559_0004247 3300053136 Bacteria 6854
221 Ga0500568_0000356 3300053139 Bacteria 35606
222 Ga0500568_0000983 3300053139 Bacteria 19591
223 Ga0500568_0098765 3300053139 Bacteria 1096
224 Ga0500577_0000304 3300053142 Bacteria 12750
225 Ga0500577_0070258 3300053142 Bacteria 1372
226 Ga0500590_009317 3300053148 Bacteria 4938
227 Ga0500604_0002009 3300053151 Bacteria 5628
228 Ga0500616_0000895 3300053153 Bacteria 32765
229 Ga0500622_0002020 3300053156 Bacteria 15148
230 Ga0500634_0150198 3300053161 Bacteria 1090
231 Ga0500636_0003859 3300053177 Bacteria 8463
232 Ga0500636_0008650 3300053177 Bacteria 5897
233 Ga0500636_0091047 3300053177 Bacteria 1746
234 Ga0500611_006304 3300053727 Bacteria 1721
235 Ga0500611_007449 3300053727 Bacteria 1646
236 2508729427 2508501050 Bacteria 9633614
237 2509079995 2508501114 Bacteria 7082538
238 2599627841 2599185214 Bacteria 8209958
239 2599677501 2599185226 Bacteria 8233575
240 2599685471 2599185227 Bacteria 8246414
241 2599697319 2599185229 Bacteria 8216126
242 2603859800 2602042107 Bacteria 6226103
243 2774869740 2773857925 Bacteria 6472445
244 2776258639 2775506901 Bacteria 9631051
245 2835314404 2835312727 Bacteria 7413381
246 2857530595 2857524615 Bacteria 6615449
247 2882461120 2882456835 Bacteria 6863978
248 2884300946 2884298095 Bacteria 3823049
249 2893070244 2893066018 Bacteria 6158120
250 2894234755 2894232714 Bacteria 8834183
251 2919076190 2919073203 Bacteria 6531949
252 2928088309 2928084124 Bacteria 7159212
253 Ga0373954_0111638
254 JGI25404J52841_10022405
255 Ga0055540_1000149
256 Ga0070658_10002156
257 Ga0070666_10162977
258 Ga0070680_100052115
259 Ga0070680_100148219
260 Ga0068868_100372054
261 Ga0070660_100170862
262 Ga0070691_10010053
263 Ga0070692_10074605
264 Ga0070674_100034699
265 Ga0070688_100174317
266 Ga0070714_100125594
267 Ga0070681_10002137
268 Ga0070679_100004261
269 Ga0070672_100264614
270 Ga0070665_100309748
271 Ga0070704_100068228
272 Ga0068855_100051435
273 Ga0068856_100490810
274 Ga0068859_100011569
275 Ga0068862_100228072
276 Ga0081455_10002881
277 Ga0081455_10005772
278 Ga0081455_10042223
279 Ga0081538_10117529
280 Ga0081540_1000001
281 Ga0081540_1000736
282 Ga0081539_10005307
283 Ga0075365_10023911
284 Ga0075365_10030462
285 Ga0075368_10096206
286 Ga0075363_100000734
287 Ga0075363_100089339
288 Ga0075364_10019863
289 Ga0070716_100147273
290 Ga0075362_10053841
291 Ga0075362_10090500
292 Ga0075367_10006669
293 Ga0075367_10024019
294 Ga0075367_10024622
295 Ga0075369_10000362
296 Ga0075366_10005069
297 Ga0075366_10036773
298 Ga0075370_10108513
299 Ga0075428_100276748
300 Ga0075431_100000673
301 Ga0075433_10017610
302 Ga0075434_100021177
303 Ga0075429_100000003
304 Ga0075436_100141802
305 Ga0097620_100011569
306 Ga0111539_10078129
307 Ga0111539_10587652
308 Ga0105245_10700836
309 Ga0114129_10007207
310 Ga0105243_10100897
311 Ga0099796_10004763
312 Ga0163162_10168730
313 Ga0157372_10531935
314 Ga0157375_10180095
315 Ga0157376_10201082
316 Ga0209564_1000871
317 Ga0209564_1032965
318 Ga0209050_1000537
319 Ga0209051_1000345
320 Ga0209257_1002834
321 Ga0207688_10212608
322 Ga0207645_10217563
323 Ga0207707_10002213
324 Ga0207695_10044154
325 Ga0207646_10195934
326 Ga0207681_10185427
327 Ga0207659_10253774
328 Ga0207700_10157105
329 Ga0207664_10122984
330 Ga0207670_10167424
331 Ga0207691_10276327
332 Ga0207667_10024822
333 Ga0207678_10002505
334 Ga0207674_10057329
335 Ga0207675_100026061
336 Ga0207683_10212718
337 Ga0207428_10027222
338 Ga0207428_10067276
339 Ga0268266_10212974
340 Ga0268265_10521791
341 Ga0307405_10117868
342 Ga0307407_10222053
343 Ga0307412_10312192
344 Ga0307416_100371947
345 Ga0307414_10039326
346 Ga0307414_10117308
347 Ga0307411_10335596
348 Ga0307507_10051930
349 Ga0373926_0104706
350 Ga0373940_0001496
351 Ga0373945_0099595
352 Ga0373953_0100715
353 Ga0373954_0145723
354 Ga0373956_0007638
355 Ga0373957_0006447
356 Ga0373955_0064516
357 Ga0373935_0040858
358 Ga0373927_0055617
359 Ga0373937_0032086
360 Ga0373937_0051681
361 Ga0373937_0055696
362 Ga0373925_0028410
363 Ga0395905_0048271
364 Ga0436365_1004933
365 Ga0436365_1913197
366 Ga0439465_0001472
367 Ga0439445_0000311
368 Ga0439449_0001169
369 Ga0439458_0049609
370 Ga0451576_0036785
371 Ga0451576_0212864
372 Ga0495592_0009044
373 Ga0495592_0203059
374 Ga0495638_0012452
375 Ga0495638_0013191
376 Ga0495651_0194704
377 Ga0495653_0005677
378 Ga0495653_0232571
379 Ga0495650_0001463
380 Ga0495582_0170980
381 Ga0495664_0002486
382 Ga0495608_0120726
383 Ga0495610_0011354
384 Ga0495610_0027441
385 Ga0495618_0006096
386 Ga0495628_0011244
387 Ga0495630_0244798
388 Ga0495631_0000135
389 Ga0495652_0032345
390 Ga0495654_0064407
391 Ga0495640_0010256
392 Ga0495587_0026476
393 Ga0495622_0008476
394 Ga0495667_0013520
395 Ga0495667_0085826
396 Ga0495635_0005046
397 Ga0495588_0018113
398 Ga0495657_0022520
399 Ga0495623_0028228
400 Ga0495646_0051078
401 Ga0495658_0117781
402 Ga0495613_0239017
403 Ga0495670_0098792
404 Ga0495671_0133608
405 Ga0495589_0159205
406 Ga0495660_0069799
407 Ga0495604_0040222
408 Ga0495674_0016021
409 Ga0495675_0010988
410 Ga0495684_0326542
411 Ga0495686_0093859
412 Ga0495602_0024624
413 Ga0495626_0019316
414 Ga0496101_0036822
415 Ga0496102_0076902
416 Ga0496107_0139069
417 Ga0496114_0131633
418 Ga0496116_0001687
419 Ga0496117_0154461
420 Ga0496117_0175380
421 Ga0496119_0080662
422 Ga0496121_0053882
423 Ga0496122_0086715
424 Ga0496122_0130185
425 Ga0496123_0008569
426 Ga0496124_0179801
427 Ga0496125_0000125
428 Ga0496125_0000681
429 Ga0496125_0008508
430 Ga0496125_0028742
431 Ga0496126_0277631
432 Ga0496126_0350913
433 Ga0501037_0020749
434 Ga0501039_0304107
435 nmdc:mga03683_10774_c1
436 nmdc:mga03683_117740_c1
437 nmdc:mga00v17_63658_c1
438 nmdc:mga0yw44_7186_c1
439 nmdc:mga0k408_26618_c1
440 nmdc:mga0k408_4288_c1
441 nmdc:mga0k408_8237_c1
442 nmdc:mga06z11_16850_c1
443 nmdc:mga06z11_63707_c1
444 nmdc:mga06z11_9603_c1
445 nmdc:mga05p37_77_c1
446 nmdc:mga09592_355_c1
447 nmdc:mga06r32_11402_c1
448 nmdc:mga06r32_19481_c1
449 nmdc:mga06r32_34053_c1
450 nmdc:mga08y16_15535_c1
451 nmdc:mga0n895_180904_c1
452 nmdc:mga0n895_39952_c1
453 nmdc:mga0rr50_22362_c1
454 nmdc:mga0a205_15669_c1
455 Ga0495601_0023245
456 Ga0495612_0004910
457 Ga0500610_0000152
458 Ga0500643_029504
459 Ga0500646_0017202
460 Ga0500647_0026624
461 Ga0500651_0008263
462 Ga0500651_0013503
463 Ga0500566_0005775
464 Ga0500641_0001884
465 Ga0500650_0000214
466 Ga0500556_0000125
467 Ga0500562_053194
468 Ga0500569_024008
469 Ga0500592_011764
470 Ga0500642_0000194
471 Ga0500652_000210
472 Ga0500559_0004247
473 Ga0500568_0000356
474 Ga0500568_0000983
475 Ga0500568_0098765
476 Ga0500577_0000304
477 Ga0500577_0070258
478 Ga0500590_009317
479 Ga0500604_0002009
480 Ga0500616_0000895
481 Ga0500622_0002020
482 Ga0500634_0150198
483 Ga0500636_0003859
484 Ga0500636_0008650
485 Ga0500636_0091047
486 Ga0500611_006304
487 Ga0500611_007449
488 2508729427
489 2509079995
490 2599627841
491 2599677501
492 2599685471
493 2599697319
494 2603859800
495 2774869740
496 2776258639
497 2835314404
498 2857530595
499 2882461120
500 2884300946
501 2893070244
502 2894234755
503 2919076190
504 2928088309

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

80

355

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qpq-assembly3.cif.gz_C structure of bug27 from bordetella pertussis 0.9589 25 321
2qpq-assembly3.cif.gz_C structure of bug27 from bordetella pertussis 0.9558 25 321
8hk9-assembly2.cif.gz_A apo-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis 0.9555 27 317
2qpq-assembly2.cif.gz_B structure of bug27 from bordetella pertussis 0.9517 24 321
7ndr-assembly1.cif.gz_E crystal structure of tphc in an open conformation 0.95 27 317
ID Description Score Start End Superfamily
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.939 123 240 3.40.190.10
2dvzA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9314 24 321 3.40.190.150
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9307 123 244 3.40.190.10
2qpqC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9286 123 244 3.40.190.10
2qpqB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9264 24 321 3.40.190.150
ID Description Score Start End GO Terms
AF-A0A7X1P626-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9737 12 322
AF-A0A1Q3XNW8-F1-model_v4 deleted 0.9727 16 321
AF-A0A537U4L1-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9723 53 321
AF-A0A4V2HUY2-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9722 87 319
AF-H1RZT7-F1-model_v4 Extra-cytoplasmic solute receptor 0.9703 45 321

Map