F363094

General Info

Members Datasets Scaffolds Average Seq Length
252 175 251 728

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100005330|Ga0068855_1000053303
Length 793
Sequence MKRAAGQSQGTLTAPIRRARFAMVTLAFCFWVLVIGGRLVWLQVIRHSEWVERAEKQQQRTFAVAPRRGVLYDRNLRELAMTVLVDSIYAVPSELGENREKTAAMLAQVVHTDPLDGFTTQQQLVARFNASRNFAWVARRVDAATADRVREMNLKGVYFQKEFKRFYPNNELAAQVLGYVGTDDTGLGGLEQEFDDEMHGEPGHMLTAVDAKRHVRGSVENEPQPGENLVLTIDANIQHIAERALDAQMEKMKAAHGTVVVQDPHTGQILALAIAPRFNPNDKRHMDASVLKNLAVSDVYEPGSTFKLVAYSAAIDAAGVEPTDIVDCQGGSMTMYGRTLHDDKSDHFGKVTVQYALEHSSDVGAAKMALKVGSDKFYKYIRGFGFGERSGIELPSETRGLLRPPRKWGSTSILSLAIGQEVGVTPVQLVTMVSSIANGGVYMPPHILLQSTDEMKGDARLKPAAFHPQNQLPTQLPDGAHRVIRELTAAKMRAIMEGTVVEGTGKNAQLNGYSSAGKTGTAQKVDPVTHTYSHTKLVASFAGFAPVSSPAISIAVVIDTPTVGSRYGAETSAPVFREVAQQVLEYLEVPHDQPLKATKDMLAASKPVAEDGPSENPEDLNALFDEVNNLPPDDPLKQPATGAIATSSAEVHRTAAAPARSPAGSSGAGSRLLEMLPKKVLAAFRENGPTDSMMPGEVASGSSPLRAPTITPAVQQTSHGVLVDPRRRVAVPSFTGEDLRNVVETASGIGLRVDTVGSGMAREQAPAAGTMVPLGTEVVVRFGREAQTPAPTK

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 2884215851 Edaphobacter sp. 12200R-103 Isolate Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
35 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
36 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
41 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
43 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
66 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
67 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
68 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
104 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
105 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
106 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
110 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
111 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
112 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
113 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
114 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
115 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
116 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
117 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
120 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
121 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
122 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
123 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
124 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
125 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
126 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
127 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
128 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
129 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
130 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
131 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
132 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
133 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
134 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
135 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
136 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
137 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
138 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
139 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
140 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
141 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
142 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
143 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
144 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
145 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
146 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
147 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
148 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
149 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
150 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
151 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
152 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
153 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
154 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
155 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
156 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
157 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
158 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
159 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
160 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
161 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
162 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
163 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
164 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
165 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
167 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
171 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
172 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
173 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.6
Metatranscriptomes 0
Isolates 0.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.37
Rhizosphere 93.25
Stem 0
Stem Tuber 0
Unclassified 2.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_12134909 2162886012 Unclassified 3437
2 JGI24751J29686_10001709 3300002459 Bacteria 4518
3 Ga0070658_10000315 3300005327 Bacteria 41542
4 Ga0070658_10001519 3300005327 Bacteria 19689
5 Ga0070658_10021915 3300005327 Bacteria 5124
6 Ga0070683_100000496 3300005329 Bacteria 27786
7 Ga0070670_100016323 3300005331 Bacteria 6378
8 Ga0070680_100000184 3300005336 Bacteria 40378
9 Ga0070660_100002829 3300005339 Bacteria 11942
10 Ga0070660_100003218 3300005339 Bacteria 11221
11 Ga0070660_100017968 3300005339 Bacteria 5161
12 Ga0070689_100005423 3300005340 Bacteria 8702
13 Ga0070687_100001786 3300005343 Bacteria 7773
14 Ga0070661_100009034 3300005344 Bacteria 6895
15 Ga0070668_100014828 3300005347 Bacteria 5825
16 Ga0070675_100051063 3300005354 Bacteria 3397
17 Ga0070674_100024014 3300005356 Bacteria 3954
18 Ga0070673_100045015 3300005364 Bacteria 3420
19 Ga0070688_100000531 3300005365 Bacteria 19278
20 Ga0070659_100001631 3300005366 Bacteria 16151
21 Ga0070659_100003187 3300005366 Bacteria 11679
22 Ga0070659_100023999 3300005366 Bacteria 4672
23 Ga0070659_100051237 3300005366 Bacteria 3245
24 Ga0070711_100030548 3300005439 Unclassified 3568
25 Ga0070663_100036827 3300005455 Bacteria 3401
26 Ga0070662_100005457 3300005457 Bacteria 8124
27 Ga0070681_10000011 3300005458 Bacteria 139059
28 Ga0070681_10030494 3300005458 Bacteria 5411
29 Ga0070685_10001299 3300005466 Bacteria 13171
30 Ga0070707_100000001 3300005468 Bacteria 320358
31 Ga0070707_100000272 3300005468 Bacteria 51273
32 Ga0070699_100006518 3300005518 Bacteria 10164
33 Ga0070679_100000013 3300005530 Bacteria 151602
34 Ga0070679_100064097 3300005530 Bacteria 3663
35 Ga0070684_100002473 3300005535 Bacteria 13605
36 Ga0070684_100026392 3300005535 Bacteria 4893
37 Ga0070684_100044359 3300005535 Unclassified 3846
38 Ga0070697_100050894 3300005536 Unclassified 3364
39 Ga0068853_100002608 3300005539 Bacteria 13555
40 Ga0068853_100018207 3300005539 Bacteria 5811
41 Ga0068853_100021333 3300005539 Bacteria 5400
42 Ga0070672_100030013 3300005543 Bacteria 4081
43 Ga0068855_100002980 3300005563 Bacteria 20694
44 Ga0068855_100005330 3300005563 Bacteria 15705
45 Ga0068855_100014311 3300005563 Bacteria 9552
46 Ga0068855_100023292 3300005563 Bacteria 7416
47 Ga0068855_100058466 3300005563 Bacteria 4515
48 Ga0068855_100071852 3300005563 Bacteria 4022
49 Ga0068855_100078623 3300005563 Bacteria 3826
50 Ga0068857_100048827 3300005577 Bacteria 3755
51 Ga0068854_100000096 3300005578 Bacteria 61145
52 Ga0068854_100012493 3300005578 Bacteria 5564
53 Ga0068856_100007717 3300005614 Bacteria 10505
54 Ga0068856_100070866 3300005614 Bacteria 3449
55 Ga0070702_100000659 3300005615 Bacteria 12870
56 Ga0068851_10003198 3300005834 Bacteria 7261
57 Ga0068870_10001956 3300005840 Bacteria 8520
58 Ga0068863_100047292 3300005841 Bacteria 4081
59 Ga0068860_100120139 3300005843 Bacteria 2516
60 Ga0068862_100007585 3300005844 Bacteria 8993
61 Ga0068862_100037863 3300005844 Bacteria 4089
62 Ga0081540_1015501 3300005983 Bacteria 4823
63 Ga0081539_10000886 3300005985 Bacteria 57243
64 Ga0070717_10031559 3300006028 Bacteria 4263
65 Ga0070712_100029071 3300006175 Unclassified 3703
66 Ga0070712_100038087 3300006175 Unclassified 3283
67 Ga0105240_10001851 3300009093 Bacteria 35393
68 Ga0105240_10005837 3300009093 Bacteria 18251
69 Ga0105240_10207806 3300009093 Bacteria 2290
70 Ga0105245_10011067 3300009098 Bacteria 7855
71 Ga0105247_10002106 3300009101 Bacteria 13754
72 Ga0114129_10006374 3300009147 Bacteria 16728
73 Ga0114129_10113695 3300009147 Bacteria 3733
74 Ga0105243_10067897 3300009148 Bacteria 2872
75 Ga0105241_10004409 3300009174 Bacteria 10409
76 Ga0105242_10002813 3300009176 Bacteria 13637
77 Ga0105237_10131891 3300009545 Unclassified 2493
78 Ga0105238_10024705 3300009551 Bacteria 6126
79 Ga0105238_10042677 3300009551 Bacteria 4592
80 Ga0105249_10016625 3300009553 Bacteria 6530
81 Ga0105239_10005619 3300010375 Bacteria 14660
82 Ga0105246_10002261 3300011119 Bacteria 11622
83 Ga0157373_10020271 3300013100 Bacteria 4836
84 Ga0157371_10007887 3300013102 Bacteria 8546
85 Ga0157370_10013416 3300013104 Bacteria 8441
86 Ga0157370_10018631 3300013104 Bacteria 6979
87 Ga0157370_10028787 3300013104 Bacteria 5462
88 Ga0157369_10004905 3300013105 Bacteria 15685
89 Ga0157369_10015374 3300013105 Bacteria 8629
90 Ga0157369_10036454 3300013105 Bacteria 5387
91 Ga0157369_10038832 3300013105 Bacteria 5205
92 Ga0157369_10068618 3300013105 Unclassified 3809
93 Ga0157374_10049863 3300013296 Bacteria 3889
94 Ga0163162_10001796 3300013306 Bacteria 20135
95 Ga0163162_10013277 3300013306 Bacteria 8045
96 Ga0157372_10018818 3300013307 Bacteria 7431
97 Ga0157372_10019230 3300013307 Bacteria 7356
98 Ga0163163_10003303 3300014325 Bacteria 13677
99 Ga0163163_10015099 3300014325 Bacteria 7126
100 Ga0163163_10078496 3300014325 Unclassified 3298
101 Ga0157380_10002407 3300014326 Bacteria 12586
102 Ga0157377_10012269 3300014745 Bacteria 4303
103 Ga0157379_10003176 3300014968 Bacteria 13915
104 Ga0157379_10009022 3300014968 Bacteria 8691
105 Ga0157376_10006752 3300014969 Bacteria 8122
106 Ga0207688_10009196 3300025901 Bacteria 5383
107 Ga0207647_10001115 3300025904 Bacteria 20674
108 Ga0207647_10008617 3300025904 Bacteria 7296
109 Ga0207643_10000375 3300025908 Bacteria 30034
110 Ga0207705_10000012 3300025909 Bacteria 472336
111 Ga0207705_10009658 3300025909 Bacteria 7017
112 Ga0207707_10000004 3300025912 Bacteria 391281
113 Ga0207695_10000354 3300025913 Bacteria 105275
114 Ga0207695_10061531 3300025913 Bacteria 3880
115 Ga0207695_10107720 3300025913 Bacteria 2772
116 Ga0207663_10022183 3300025916 Bacteria 3626
117 Ga0207660_10003258 3300025917 Bacteria 10632
118 Ga0207662_10001466 3300025918 Bacteria 11455
119 Ga0207657_10000476 3300025919 Bacteria 42288
120 Ga0207657_10007505 3300025919 Bacteria 11175
121 Ga0207657_10016000 3300025919 Bacteria 7242
122 Ga0207657_10030152 3300025919 Bacteria 4928
123 Ga0207649_10000233 3300025920 Bacteria 45406
124 Ga0207649_10003966 3300025920 Bacteria 8069
125 Ga0207652_10000104 3300025921 Bacteria 91783
126 Ga0207652_10047673 3300025921 Bacteria 3660
127 Ga0207646_10000029 3300025922 Bacteria 223317
128 Ga0207646_10000294 3300025922 Bacteria 67765
129 Ga0207694_10010490 3300025924 Bacteria 6989
130 Ga0207650_10000107 3300025925 Bacteria 109863
131 Ga0207659_10046642 3300025926 Bacteria 3061
132 Ga0207690_10039886 3300025932 Unclassified 3066
133 Ga0207706_10000238 3300025933 Bacteria 60595
134 Ga0207686_10001877 3300025934 Bacteria 11653
135 Ga0207704_10038617 3300025938 Bacteria 2771
136 Ga0207661_10000138 3300025944 Bacteria 46093
137 Ga0207679_10000058 3300025945 Bacteria 101602
138 Ga0207667_10002653 3300025949 Bacteria 22097
139 Ga0207667_10005556 3300025949 Bacteria 15383
140 Ga0207667_10012926 3300025949 Bacteria 9587
141 Ga0207667_10043217 3300025949 Bacteria 4783
142 Ga0207667_10051170 3300025949 Bacteria 4356
143 Ga0207667_10052934 3300025949 Bacteria 4273
144 Ga0207651_10001082 3300025960 Bacteria 12089
145 Ga0207640_10000097 3300025981 Bacteria 67786
146 Ga0207639_10000067 3300026041 Bacteria 97172
147 Ga0207678_10000582 3300026067 Bacteria 33438
148 Ga0207678_10005165 3300026067 Bacteria 11698
149 Ga0207641_10000163 3300026088 Bacteria 94033
150 Ga0207648_10001068 3300026089 Bacteria 30718
151 Ga0207676_10000142 3300026095 Bacteria 62851
152 Ga0207674_10000336 3300026116 Bacteria 60214
153 Ga0207674_10000835 3300026116 Bacteria 40174
154 Ga0207683_10002065 3300026121 Bacteria 17759
155 Ga0268266_10013858 3300028379 Bacteria 6940
156 Ga0268264_10054883 3300028381 Unclassified 3328
157 Ga0307513_10005293 3300031456 Bacteria 17079
158 Ga0307510_10041558 3300033180 Bacteria 5024
159 Ga0373924_0004106 3300035410 Bacteria 5066
160 Ga0373935_0004073 3300035692 Bacteria 8543
161 Ga0373937_0022422 3300036401 Bacteria 5677
162 Ga0373937_0046969 3300036401 Unclassified 3949
163 Ga0395905_0018005 3300037471 Bacteria 6707
164 Ga0395905_0020568 3300037471 Bacteria 6250
165 Ga0395905_0112937 3300037471 Bacteria 2552
166 Ga0395901_0081749 3300038443 Bacteria 3375
167 Ga0436363_0894344 3300039450 Bacteria 4748
168 Ga0451577_0000432 3300042876 Bacteria 74811
169 Ga0451577_0045601 3300042876 Bacteria 3924
170 Ga0466961_0026685 3300044693 Bacteria 3714
171 Ga0453684_0000104 3300044712 Bacteria 365431
172 Ga0466957_0000086 3300044842 Bacteria 37571
173 Ga0451576_0003911 3300045051 Bacteria 19895
174 Ga0466967_0024760 3300045976 Bacteria 4940
175 Ga0495629_0004452 3300046459 Bacteria 10498
176 Ga0495629_0022153 3300046459 Bacteria 4531
177 Ga0495651_0022525 3300046462 Bacteria 4896
178 Ga0495650_0000038 3300046471 Bacteria 377530
179 Ga0495650_0004733 3300046471 Bacteria 9156
180 Ga0495580_0009227 3300046472 Bacteria 7773
181 Ga0495582_0001793 3300046473 Bacteria 12126
182 Ga0495639_0015960 3300046475 Unclassified 3257
183 Ga0495594_0001657 3300046499 Bacteria 11568
184 Ga0495594_0003427 3300046499 Bacteria 8181
185 Ga0495594_0053758 3300046499 Unclassified 2219
186 Ga0495583_0015944 3300046506 Bacteria 4062
187 Ga0495628_0015724 3300046516 Bacteria 6317
188 Ga0495628_0043599 3300046516 Bacteria 3572
189 Ga0495630_0016733 3300046517 Bacteria 5365
190 Ga0495644_0000153 3300046523 Bacteria 32645
191 Ga0495666_0003911 3300046526 Bacteria 7530
192 Ga0495652_0015585 3300046529 Bacteria 6803
193 Ga0495665_0012845 3300046531 Bacteria 4532
194 Ga0495640_0039852 3300046533 Bacteria 3293
195 Ga0495586_0006056 3300046535 Bacteria 6467
196 Ga0495609_0026545 3300046538 Bacteria 2652
197 Ga0495645_0002671 3300046543 Bacteria 12110
198 Ga0495633_0021434 3300046558 Bacteria 3233
199 Ga0495667_0016724 3300046559 Bacteria 4954
200 Ga0495625_0000346 3300046660 Bacteria 70757
201 Ga0495625_0038396 3300046660 Bacteria 3506
202 Ga0495635_0030654 3300046663 Bacteria 3736
203 Ga0495659_0013309 3300046664 Bacteria 2679
204 Ga0495599_0001786 3300046678 Bacteria 12470
205 Ga0495623_0003920 3300046679 Bacteria 9815
206 Ga0495658_0018710 3300046683 Unclassified 3606
207 Ga0495613_0003611 3300046689 Bacteria 11593
208 Ga0495624_0008348 3300046690 Bacteria 7231
209 Ga0495581_0043704 3300047315 Bacteria 2591
210 Ga0495604_0012837 3300047317 Bacteria 6672
211 Ga0495604_0013438 3300047317 Bacteria 6523
212 Ga0495604_0023477 3300047317 Bacteria 4920
213 Ga0495674_0021431 3300047319 Bacteria 5979
214 Ga0495672_0007783 3300047320 Bacteria 8012
215 Ga0495676_0010946 3300047321 Bacteria 8200
216 Ga0495680_0032482 3300047322 Bacteria 4236
217 Ga0495686_0000027 3300047472 Bacteria 382657
218 Ga0495686_0001236 3300047472 Bacteria 29172
219 Ga0495686_0004094 3300047472 Bacteria 12143
220 Ga0495686_0008915 3300047472 Bacteria 7292
221 Ga0495593_0009912 3300047673 Bacteria 5525
222 Ga0496102_0034356 3300048905 Bacteria 4560
223 Ga0496104_0085468 3300048907 Bacteria 3011
224 Ga0496105_0012666 3300048908 Bacteria 6680
225 Ga0496108_0000082 3300048911 Bacteria 101998
226 Ga0496109_0000148 3300048912 Bacteria 69299
227 Ga0496110_0000377 3300048913 Bacteria 29876
228 Ga0496111_0000789 3300048914 Bacteria 16936
229 Ga0496112_0000151 3300048915 Bacteria 43735
230 Ga0496112_0004703 3300048915 Bacteria 11626
231 Ga0496113_0001130 3300048916 Bacteria 14502
232 Ga0496113_0069541 3300048916 Unclassified 2674
233 Ga0496126_0000063 3300048929 Bacteria 256841
234 Ga0496126_0000127 3300048929 Bacteria 178345
235 Ga0496126_0014694 3300048929 Bacteria 7901
236 Ga0495682_0013507 3300049460 Bacteria 3107
237 Ga0501299_002182 3300049522 Bacteria 2682
238 Ga0501033_0001411 3300049570 Bacteria 21335
239 Ga0501033_0028126 3300049570 Bacteria 4226
240 Ga0501034_0005357 3300049571 Bacteria 14047
241 Ga0501036_0002654 3300049572 Bacteria 14112
242 Ga0501037_0002973 3300049573 Bacteria 12304
243 Ga0501038_0000277 3300049574 Bacteria 43431
244 Ga0501043_0008393 3300049579 Bacteria 8135
245 Ga0501046_0000080 3300049580 Bacteria 101793
246 Ga0501047_0000884 3300049581 Bacteria 30587
247 Ga0501047_0095174 3300049581 Bacteria 2857
248 Ga0501283_001411 3300049779 Unclassified 3131
249 Ga0501035_0034196 3300049822 Bacteria 4619
250 Ga0501044_0005329 3300049823 Bacteria 14308
251 nmdc:mga05p37_53369_c1 3300050507 Unclassified 4971

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046679 Ga0495623_0003920 Ga0495623_0003920_7975_9759 558
2 3300046499 Ga0495594_0053758 Ga0495594_0053758_21_1865 565
3 3300036401 Ga0373937_0046969 Ga0373937_0046969_2064_3914 579
4 3300046664 Ga0495659_0013309 Ga0495659_0013309_672_2645 588
5 3300005535 Ga0070684_100026392 Ga0070684_1000263924 619
6 3300005985 Ga0081539_10000886 Ga0081539_1000088643 624
7 3300049522 Ga0501299_002182 Ga0501299_002182_157_2181 627
8 3300009147 Ga0114129_10006374 Ga0114129_1000637421 631
9 3300050507 nmdc:mga05p37_53369_c1 nmdc:mga05p37_53369_c1_1065_3140 631
10 3300005336 Ga0070680_100000184 Ga0070680_1000001846 633
11 3300005458 Ga0070681_10000011 Ga0070681_1000001162 633
12 3300005530 Ga0070679_100000013 Ga0070679_1000000135 633
13 3300025912 Ga0207707_10000004 Ga0207707_10000004319 633
14 3300025917 Ga0207660_10003258 Ga0207660_100032586 633
15 3300025921 Ga0207652_10000104 Ga0207652_1000010462 633
16 3300049779 Ga0501283_001411 Ga0501283_001411_86_2062 633
17 3300031456 Ga0307513_10005293 Ga0307513_1000529315 636
18 3300005468 Ga0070707_100000001 Ga0070707_10000000148 638
19 3300025922 Ga0207646_10000029 Ga0207646_10000029154 638
20 3300005468 Ga0070707_100000272 Ga0070707_10000027233 639
21 3300025922 Ga0207646_10000294 Ga0207646_1000029433 639
22 3300037471 Ga0395905_0020568 Ga0395905_0020568_2974_4959 639
23 3300005844 Ga0068862_100037863 Ga0068862_1000378632 644
24 3300014326 Ga0157380_10002407 Ga0157380_100024077 644
25 3300009176 Ga0105242_10002813 Ga0105242_1000281311 646
26 3300013306 Ga0163162_10013277 Ga0163162_100132775 646
27 3300005327 Ga0070658_10001519 Ga0070658_1000151913 647
28 3300005364 Ga0070673_100045015 Ga0070673_1000450151 647
29 3300005843 Ga0068860_100120139 Ga0068860_1001201392 647
30 3300006175 Ga0070712_100029071 Ga0070712_1000290714 647
31 3300009148 Ga0105243_10067897 Ga0105243_100678971 647
32 3300025916 Ga0207663_10022183 Ga0207663_100221833 647
33 3300025934 Ga0207686_10001877 Ga0207686_100018775 647
34 3300009147 Ga0114129_10113695 Ga0114129_101136952 649
35 3300042876 Ga0451577_0000432 Ga0451577_0000432_15543_17711 654
36 3300044712 Ga0453684_0000104 Ga0453684_0000104_57590_59758 654
37 3300045051 Ga0451576_0003911 Ga0451576_0003911_1884_4052 654
38 3300005439 Ga0070711_100030548 Ga0070711_1000305482 655
39 3300005539 Ga0068853_100021333 Ga0068853_1000213332 655
40 3300005578 Ga0068854_100012493 Ga0068854_1000124933 655
41 3300006175 Ga0070712_100038087 Ga0070712_1000380872 655
42 3300013296 Ga0157374_10049863 Ga0157374_100498632 655
43 3300025919 Ga0207657_10000476 Ga0207657_1000047640 655
44 3300035410 Ga0373924_0004106 Ga0373924_0004106_1450_3624 655
45 3300035692 Ga0373935_0004073 Ga0373935_0004073_4944_7112 655
46 3300042876 Ga0451577_0045601 Ga0451577_0045601_1269_3446 655
47 3300046475 Ga0495639_0015960 Ga0495639_0015960_215_2461 655
48 3300046517 Ga0495630_0016733 Ga0495630_0016733_1605_3773 655
49 3300046663 Ga0495635_0030654 Ga0495635_0030654_990_3158 655
50 3300047673 Ga0495593_0009912 Ga0495593_0009912_127_2295 655
51 3300048915 Ga0496112_0004703 Ga0496112_0004703_9197_11365 655
52 3300005563 Ga0068855_100071852 Ga0068855_1000718522 656
53 3300025949 Ga0207667_10043217 Ga0207667_100432173 656
54 3300046506 Ga0495583_0015944 Ga0495583_0015944_571_2904 657
55 3300049460 Ga0495682_0013507 Ga0495682_0013507_145_2478 657
56 3300005530 Ga0070679_100064097 Ga0070679_1000640974 658
57 3300014325 Ga0163163_10015099 Ga0163163_100150993 658
58 3300025921 Ga0207652_10047673 Ga0207652_100476734 658
59 3300025913 Ga0207695_10107720 Ga0207695_101077202 659
60 3300049570 Ga0501033_0028126 Ga0501033_0028126_1790_4132 659
61 3300049581 Ga0501047_0095174 Ga0501047_0095174_350_2692 659
62 3300009093 Ga0105240_10001851 Ga0105240_1000185129 660
63 3300005339 Ga0070660_100002829 Ga0070660_1000028296 661
64 3300005366 Ga0070659_100001631 Ga0070659_1000016315 661
65 3300005539 Ga0068853_100002608 Ga0068853_1000026085 661
66 3300005578 Ga0068854_100000096 Ga0068854_10000009650 661
67 3300025919 Ga0207657_10007505 Ga0207657_100075056 661
68 3300025981 Ga0207640_10000097 Ga0207640_1000009749 661
69 3300026041 Ga0207639_10000067 Ga0207639_1000006755 661
70 3300038443 Ga0395901_0081749 Ga0395901_0081749_1043_3145 662
71 3300044693 Ga0466961_0026685 Ga0466961_0026685_123_2384 662
72 3300005535 Ga0070684_100044359 Ga0070684_1000443591 665
73 3300005983 Ga0081540_1015501 Ga0081540_10155013 665
74 3300009551 Ga0105238_10042677 Ga0105238_100426773 665
75 3300013105 Ga0157369_10068618 Ga0157369_100686183 665
76 3300048907 Ga0496104_0085468 Ga0496104_0085468_825_2981 665
77 3300005366 Ga0070659_100023999 Ga0070659_1000239992 666
78 3300005455 Ga0070663_100036827 Ga0070663_1000368272 666
79 3300005563 Ga0068855_100014311 Ga0068855_1000143115 666
80 3300005563 Ga0068855_100078623 Ga0068855_1000786232 666
81 3300013104 Ga0157370_10018631 Ga0157370_100186313 666
82 3300013105 Ga0157369_10004905 Ga0157369_1000490512 666
83 3300013105 Ga0157369_10038832 Ga0157369_100388323 666
84 3300025904 Ga0207647_10008617 Ga0207647_100086172 666
85 3300025913 Ga0207695_10061531 Ga0207695_100615312 666
86 3300025919 Ga0207657_10030152 Ga0207657_100301523 666
87 3300025949 Ga0207667_10012926 Ga0207667_100129262 666
88 3300026067 Ga0207678_10000582 Ga0207678_1000058213 666
89 3300026116 Ga0207674_10000835 Ga0207674_100008358 666
90 3300039450 Ga0436363_0894344 Ga0436363_0894344_1201_3402 668
91 3300048929 Ga0496126_0014694 Ga0496126_0014694_4382_6709 669
92 3300037471 Ga0395905_0112937 Ga0395905_0112937_195_2306 671
93 3300026067 Ga0207678_10005165 Ga0207678_100051654 673
94 3300047472 Ga0495686_0004094 Ga0495686_0004094_3226_5499 674
95 3300014325 Ga0163163_10078496 Ga0163163_100784962 675
96 3300014969 Ga0157376_10006752 Ga0157376_100067527 675
97 3300048908 Ga0496105_0012666 Ga0496105_0012666_234_2558 675
98 3300048916 Ga0496113_0069541 Ga0496113_0069541_249_2573 675
99 3300044842 Ga0466957_0000086 Ga0466957_0000086_16247_18409 676
100 3300045976 Ga0466967_0024760 Ga0466967_0024760_2244_4541 676
101 3300046683 Ga0495658_0018710 Ga0495658_0018710_991_3177 676
102 3300047472 Ga0495686_0008915 Ga0495686_0008915_1561_3903 676
103 3300006028 Ga0070717_10031559 Ga0070717_100315595 677
104 3300013105 Ga0157369_10015374 Ga0157369_100153748 677
105 3300013307 Ga0157372_10019230 Ga0157372_100192303 677
106 3300009553 Ga0105249_10016625 Ga0105249_100166257 678
107 3300046558 Ga0495633_0021434 Ga0495633_0021434_739_3060 678
108 3300047472 Ga0495686_0001236 Ga0495686_0001236_25581_27884 678
109 3300005458 Ga0070681_10030494 Ga0070681_100304944 679
110 3300036401 Ga0373937_0022422 Ga0373937_0022422_1715_3898 679
111 3300046472 Ga0495580_0009227 Ga0495580_0009227_2549_4702 679
112 3300046660 Ga0495625_0038396 Ga0495625_0038396_526_2865 679
113 3300005563 Ga0068855_100058466 Ga0068855_1000584663 680
114 3300013306 Ga0163162_10001796 Ga0163162_100017963 680
115 3300014968 Ga0157379_10009022 Ga0157379_100090223 680
116 3300025949 Ga0207667_10051170 Ga0207667_100511704 680
117 3300046516 Ga0495628_0043599 Ga0495628_0043599_898_3243 680
118 3300046543 Ga0495645_0002671 Ga0495645_0002671_4466_6811 680
119 3300047317 Ga0495604_0012837 Ga0495604_0012837_22_2352 680
120 3300047317 Ga0495604_0013438 Ga0495604_0013438_3679_6024 680
121 3300047319 Ga0495674_0021431 Ga0495674_0021431_2958_5312 680
122 iso_pu_bacteria 2884215851 2884217648 680
123 3300005563 Ga0068855_100002980 Ga0068855_1000029802 681
124 3300013104 Ga0157370_10013416 Ga0157370_100134165 681
125 3300025949 Ga0207667_10002653 Ga0207667_1000265316 681
126 3300037471 Ga0395905_0018005 Ga0395905_0018005_2710_4875 681
127 3300046538 Ga0495609_0026545 Ga0495609_0026545_146_2479 681
128 3300047315 Ga0495581_0043704 Ga0495581_0043704_140_2473 681
129 3300047472 Ga0495686_0000027 Ga0495686_0000027_171784_174093 681
130 3300048929 Ga0496126_0000063 Ga0496126_0000063_169641_171905 681
131 3300046459 Ga0495629_0022153 Ga0495629_0022153_1985_4321 682
132 3300046499 Ga0495594_0003427 Ga0495594_0003427_460_2796 682
133 3300046523 Ga0495644_0000153 Ga0495644_0000153_7806_10139 682
134 3300046689 Ga0495613_0003611 Ga0495613_0003611_8434_10770 682
135 3300049570 Ga0501033_0001411 Ga0501033_0001411_11800_14121 682
136 3300049571 Ga0501034_0005357 Ga0501034_0005357_832_3153 682
137 3300049572 Ga0501036_0002654 Ga0501036_0002654_9900_12221 682
138 3300049573 Ga0501037_0002973 Ga0501037_0002973_7902_10223 682
139 3300049574 Ga0501038_0000277 Ga0501038_0000277_21385_23706 682
140 3300049579 Ga0501043_0008393 Ga0501043_0008393_657_2978 682
141 3300049580 Ga0501046_0000080 Ga0501046_0000080_53441_55762 682
142 3300049581 Ga0501047_0000884 Ga0501047_0000884_2258_4579 682
143 3300049822 Ga0501035_0034196 Ga0501035_0034196_1749_4070 682
144 3300049823 Ga0501044_0005329 Ga0501044_0005329_11438_13759 682
145 3300025924 Ga0207694_10010490 Ga0207694_100104902 683
146 3300028379 Ga0268266_10013858 Ga0268266_100138583 683
147 3300046459 Ga0495629_0004452 Ga0495629_0004452_3120_5456 683
148 3300046462 Ga0495651_0022525 Ga0495651_0022525_2483_4819 683
149 3300046471 Ga0495650_0000038 Ga0495650_0000038_48384_50693 683
150 3300046471 Ga0495650_0004733 Ga0495650_0004733_5802_8147 683
151 3300046473 Ga0495582_0001793 Ga0495582_0001793_8621_10957 683
152 3300046499 Ga0495594_0001657 Ga0495594_0001657_2273_4609 683
153 3300046516 Ga0495628_0015724 Ga0495628_0015724_214_2550 683
154 3300046526 Ga0495666_0003911 Ga0495666_0003911_243_2579 683
155 3300046529 Ga0495652_0015585 Ga0495652_0015585_2010_4346 683
156 3300046531 Ga0495665_0012845 Ga0495665_0012845_205_2541 683
157 3300046533 Ga0495640_0039852 Ga0495640_0039852_660_2996 683
158 3300046535 Ga0495586_0006056 Ga0495586_0006056_1805_4141 683
159 3300046559 Ga0495667_0016724 Ga0495667_0016724_2526_4862 683
160 3300046660 Ga0495625_0000346 Ga0495625_0000346_7843_10185 683
161 3300046678 Ga0495599_0001786 Ga0495599_0001786_3188_5524 683
162 3300046690 Ga0495624_0008348 Ga0495624_0008348_2295_4631 683
163 3300047317 Ga0495604_0023477 Ga0495604_0023477_2330_4666 683
164 3300047321 Ga0495676_0010946 Ga0495676_0010946_5000_7336 683
165 3300047322 Ga0495680_0032482 Ga0495680_0032482_1065_3401 683
166 3300005339 Ga0070660_100017968 Ga0070660_1000179682 684
167 3300005344 Ga0070661_100009034 Ga0070661_1000090341 684
168 3300005366 Ga0070659_100051237 Ga0070659_1000512372 684
169 3300005539 Ga0068853_100018207 Ga0068853_1000182075 684
170 3300005563 Ga0068855_100005330 Ga0068855_1000053303 684
171 3300005563 Ga0068855_100023292 Ga0068855_1000232927 684
172 3300005577 Ga0068857_100048827 Ga0068857_1000488272 684
173 3300005614 Ga0068856_100070866 Ga0068856_1000708663 684
174 3300009093 Ga0105240_10005837 Ga0105240_1000583713 684
175 3300009551 Ga0105238_10024705 Ga0105238_100247052 684
176 3300013104 Ga0157370_10028787 Ga0157370_100287875 684
177 3300013105 Ga0157369_10036454 Ga0157369_100364544 684
178 3300013307 Ga0157372_10018818 Ga0157372_100188183 684
179 3300025913 Ga0207695_10000354 Ga0207695_1000035436 684
180 3300025920 Ga0207649_10003966 Ga0207649_100039667 684
181 3300025932 Ga0207690_10039886 Ga0207690_100398862 684
182 3300025949 Ga0207667_10005556 Ga0207667_100055566 684
183 3300025949 Ga0207667_10052934 Ga0207667_100529343 684
184 3300033180 Ga0307510_10041558 Ga0307510_100415583 684
185 3300047320 Ga0495672_0007783 Ga0495672_0007783_3307_5652 684
186 3300048929 Ga0496126_0000127 Ga0496126_0000127_46483_48816 684
187 3300005327 Ga0070658_10000315 Ga0070658_100003153 685
188 3300025909 Ga0207705_10000012 Ga0207705_100000125 685
189 3300005327 Ga0070658_10021915 Ga0070658_100219153 686
190 3300005518 Ga0070699_100006518 Ga0070699_1000065185 686
191 3300005536 Ga0070697_100050894 Ga0070697_1000508942 686
192 3300025909 Ga0207705_10009658 Ga0207705_100096584 686
193 2162886012 MBSR1b_contig_12134909 MBSR1b_0498.00001930 688
194 3300002459 JGI24751J29686_10001709 JGI24751J29686_100017093 688
195 3300005329 Ga0070683_100000496 Ga0070683_1000004968 688
196 3300005331 Ga0070670_100016323 Ga0070670_1000163233 688
197 3300005339 Ga0070660_100003218 Ga0070660_1000032184 688
198 3300005340 Ga0070689_100005423 Ga0070689_1000054232 688
199 3300005343 Ga0070687_100001786 Ga0070687_1000017869 688
200 3300005347 Ga0070668_100014828 Ga0070668_1000148286 688
201 3300005354 Ga0070675_100051063 Ga0070675_1000510634 688
202 3300005356 Ga0070674_100024014 Ga0070674_1000240142 688
203 3300005365 Ga0070688_100000531 Ga0070688_1000005317 688
204 3300005366 Ga0070659_100003187 Ga0070659_1000031874 688
205 3300005457 Ga0070662_100005457 Ga0070662_1000054573 688
206 3300005466 Ga0070685_10001299 Ga0070685_100012999 688
207 3300005535 Ga0070684_100002473 Ga0070684_1000024738 688
208 3300005543 Ga0070672_100030013 Ga0070672_1000300132 688
209 3300005614 Ga0068856_100007717 Ga0068856_1000077176 688
210 3300005615 Ga0070702_100000659 Ga0070702_1000006594 688
211 3300005834 Ga0068851_10003198 Ga0068851_100031982 688
212 3300005840 Ga0068870_10001956 Ga0068870_100019564 688
213 3300005841 Ga0068863_100047292 Ga0068863_1000472923 688
214 3300005844 Ga0068862_100007585 Ga0068862_1000075857 688
215 3300009093 Ga0105240_10207806 Ga0105240_102078061 688
216 3300009098 Ga0105245_10011067 Ga0105245_100110672 688
217 3300009101 Ga0105247_10002106 Ga0105247_100021069 688
218 3300009174 Ga0105241_10004409 Ga0105241_100044091 688
219 3300009545 Ga0105237_10131891 Ga0105237_101318912 688
220 3300010375 Ga0105239_10005619 Ga0105239_100056194 688
221 3300011119 Ga0105246_10002261 Ga0105246_1000226112 688
222 3300013100 Ga0157373_10020271 Ga0157373_100202715 688
223 3300013102 Ga0157371_10007887 Ga0157371_1000788710 688
224 3300014325 Ga0163163_10003303 Ga0163163_100033038 688
225 3300014745 Ga0157377_10012269 Ga0157377_100122693 688
226 3300014968 Ga0157379_10003176 Ga0157379_100031768 688
227 3300025901 Ga0207688_10009196 Ga0207688_100091963 688
228 3300025904 Ga0207647_10001115 Ga0207647_100011155 688
229 3300025908 Ga0207643_10000375 Ga0207643_1000037524 688
230 3300025918 Ga0207662_10001466 Ga0207662_100014664 688
231 3300025919 Ga0207657_10016000 Ga0207657_1001600010 688
232 3300025920 Ga0207649_10000233 Ga0207649_1000023341 688
233 3300025925 Ga0207650_10000107 Ga0207650_1000010771 688
234 3300025926 Ga0207659_10046642 Ga0207659_100466422 688
235 3300025933 Ga0207706_10000238 Ga0207706_1000023831 688
236 3300025938 Ga0207704_10038617 Ga0207704_100386171 688
237 3300025944 Ga0207661_10000138 Ga0207661_1000013842 688
238 3300025945 Ga0207679_10000058 Ga0207679_1000005827 688
239 3300025960 Ga0207651_10001082 Ga0207651_100010823 688
240 3300026088 Ga0207641_10000163 Ga0207641_1000016351 688
241 3300026089 Ga0207648_10001068 Ga0207648_1000106822 688
242 3300026095 Ga0207676_10000142 Ga0207676_1000014227 688
243 3300026116 Ga0207674_10000336 Ga0207674_1000033622 688
244 3300026121 Ga0207683_10002065 Ga0207683_100020659 688
245 3300028381 Ga0268264_10054883 Ga0268264_100548832 688
246 3300048905 Ga0496102_0034356 Ga0496102_0034356_1549_3672 688
247 3300048911 Ga0496108_0000082 Ga0496108_0000082_79286_81409 688
248 3300048912 Ga0496109_0000148 Ga0496109_0000148_30587_32710 688
249 3300048913 Ga0496110_0000377 Ga0496110_0000377_23773_25896 688
250 3300048914 Ga0496111_0000789 Ga0496111_0000789_6930_9053 688
251 3300048915 Ga0496112_0000151 Ga0496112_0000151_31798_33921 688
252 3300048916 Ga0496113_0001130 Ga0496113_0001130_4934_7057 688

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00905

Transpeptidase

Penicillin binding protein transpeptidase domain

257

581

0.95

PF03793

PASTA

PASTA domain

729

784

0.94

PF03717

PBP_dimer

Penicillin-binding Protein dimerisation domain

63

219

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5uy7-assembly1.cif.gz_A crystal structure of a peptidoglycan glycosyltransferase from burkholderia ambifaria 0.9597 201 550
5uy7-assembly1.cif.gz_A crystal structure of a peptidoglycan glycosyltransferase from burkholderia ambifaria 0.9537 201 550
6hzi-assembly1.cif.gz_A apo structure of tp domain from burkholderia pseudomallei penicillin-binding protein 3 0.9469 201 549
6p54-assembly2.cif.gz_B crystal structure of transpeptidase domain of pbp2 from neisseria gonorrhoeae acylated by ceftriaxone 0.9438 201 552
6p52-assembly2.cif.gz_B crystal structure of transpeptidase domain of pbp2 from neisseria gonorrhoeae with a bound phosphate at the active site 0.9437 203 552
ID Description Score Start End Superfamily
5uy7A00 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.9597 201 550 3.40.710.10
5uy7A00 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.9537 201 550 3.40.710.10
3equB02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.9535 204 551 3.30.450.330
5df7A02 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.9433 202 547 3.40.710.10
3equB02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.9393 204 551 3.30.450.330
ID Description Score Start End GO Terms
AF-A0A3C0H8E9-F1-model_v4 deleted 1 632 688
AF-T0Z9E1-F1-model_v4 Peptidoglycan glycosyltransferase 0.9837 259 414 GO:0005886
GO:0008658
GO:0016740
GO:0071555
AF-A0A3N5JGX7-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9639 303 552 GO:0005886
GO:0008658
GO:0071555
AF-A0A2H0LN92-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9637 243 553 GO:0005886
GO:0008658
GO:0071555
AF-X1Q2X3-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.962 273 534 GO:0005886
GO:0008658
GO:0071555

Feature Viewer

pLDDT pTM Quality
84.77 0.74 High
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Predicted Structure (AlphaFold2)

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