F361165

General Info

Members Datasets Scaffolds Average Seq Length
249 204 146 297

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2515154107|2515608435
Length 318
Sequence LMERSGEMEVFTRVVQEGGFSAAARSLDITPSAVSKLIARLEARLGTRLLMRTTRALTLTEEGEAYHHAALKILQALNDADQEASGGAVRGRLRVNATIPFGTMFVAPAMPAFIARNPDLIVDLSFADGIVDLVAEKTDVAIRMGNLPDSGLIARKLGQSRRVVCAAPSYLERKGKPQTPADLERHDCLTFNFRRERPSWPFRWDGREIAQAVTGSLVVNNGETMKQVVLAGAGVARLGLFHVAADIAAGRLVPLLEDCNPGDLELIHAIYVGGGPLPHRVRAFIEYMIEALEESPLLRAGRNHLSVPPCGHDVAYNA

Samples

Sample ID Description Type Environment
1 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
2 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
3 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
4 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
5 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
6 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
7 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
8 2515154113 Rhizobium ruizarguesonis Vc2 Isolate Nodule
9 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
10 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
11 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
12 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
13 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
14 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
15 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
16 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
17 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
18 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
19 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
20 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
21 2615840624 Rhizobium aethiopicum HBR26 Isolate Nodule
22 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
23 2643221640 Caulobacter sp. Root342 Isolate Unclassified
24 2643221642 Caulobacter sp. Root343 Isolate Unclassified
25 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
26 2718217997 Rhizobium phaseoli sv. phaseoli R723 Isolate Nodule
27 2718218199 Rhizobium phaseoli sv. phaseoli N261 Isolate Nodule
28 2718218232 Rhizobium phaseoli sv. phaseoli N161 Isolate Nodule
29 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
30 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
31 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
32 2721755556 Rhizobium phaseoli sv. phaseoli N931 Isolate Nodule
33 2721755684 Rhizobium phaseoli sv. phaseoli N841 Isolate Nodule
34 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
35 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
36 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
37 2721755823 Rhizobium phaseoli sv. phaseoli R630 Isolate Nodule
38 2728369352 Rhizobium phaseoli sv. phaseoli N831 Isolate Nodule
39 2738541293 Rhizobium sp. GV031 Isolate Unclassified
40 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
41 2791355259 Rhizobium hidalgonense FH14 Isolate Nodule
42 2791355261 Rhizobium sp. J15 Isolate Nodule
43 2791355264 Rhizobium sp. S9 Isolate Nodule
44 2791355265 Rhizobium sp. H4 Isolate Nodule
45 2818991457 Xanthomonas translucens 569 Isolate Unclassified
46 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
47 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
48 2838016132 Rhizobium phaseoli SEMIA 4071 Isolate Nodule
49 2838048938 Rhizobium pisi 27/80 Isolate Nodule
50 2838061910 Rhizobium phaseoli L15 Isolate Nodule
51 2838068647 Rhizobium esperanzae VC28 Isolate Nodule
52 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
53 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
54 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
55 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
56 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
57 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
58 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
59 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
60 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
61 2842264693 Rhizobium phaseoli SEMIA 487 Isolate Nodule
62 2842311132 Rhizobium phaseoli SEMIA 4002 Isolate Nodule
63 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
64 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
65 2842422224 Rhizobium esperanzae SEMIA 4042 Isolate Nodule
66 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
67 2842434925 Rhizobium esperanzae SEMIA 4051 Isolate Nodule
68 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
69 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
70 2842462802 Rhizobium phaseoli SEMIA 4057 Isolate Nodule
71 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
72 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
73 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
74 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
75 2857516855 Rhizobium sp. R-72456 Isolate Unclassified
76 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
77 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
78 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
79 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
80 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
81 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
82 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
83 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
84 2933599457 Rhizobium phaseoli M3 Isolate Nodule
85 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
86 2936375103 Rhizobium changzhiense WYCCWR 11317 Isolate Nodule
87 2936996657 Sinorhizobium meliloti USDA1025 Isolate Nodule
88 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
89 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
90 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
91 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
92 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
93 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
94 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
95 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
96 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
97 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
98 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
99 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
100 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
101 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
102 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
103 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
104 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
105 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
106 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
107 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
108 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
109 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
110 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
111 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
112 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
113 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
114 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
115 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
116 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
117 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
118 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
119 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
124 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
127 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
128 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
129 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
130 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
131 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
132 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
133 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
134 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
135 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
136 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
137 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
138 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
139 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
140 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
141 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
142 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
143 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
144 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
145 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
146 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
147 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
148 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
149 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
150 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
151 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
152 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
153 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
154 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
155 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
156 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
157 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
158 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
159 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
160 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
161 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
162 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
163 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
164 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
165 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
166 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
167 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
168 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
169 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
170 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
171 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
172 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
173 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
174 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
175 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
176 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
177 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
178 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
179 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
180 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
181 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
182 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
183 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
184 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
185 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
186 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
187 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
188 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
189 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
190 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
191 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
192 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
193 8005382845 Rhizobium sp. R634 Isolate Nodule
194 8005395548 Rhizobium sp. R339 Isolate Nodule
195 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
196 8005497431 Rhizobium phaseoli CCGM8 Isolate Unclassified
197 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
198 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
199 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
200 8005668836 Rhizobium phaseoli CCGM9 Isolate Unclassified
201 8005695170 Rhizobium sp. RMa-01 Isolate Unclassified
202 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
203 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule
204 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 58.63
Metatranscriptomes 0
Isolates 41.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.86
Nodule 28.51
Rhizoplane 2.81
Rhizosphere 31.33
Stem 0
Stem Tuber 0
Unclassified 22.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10011589 3300002067 Bacteria 2793
2 JGI25162J39368_1001814 3300002737 Bacteria 10027
3 JGI25152J39213_1000814 3300002773 Bacteria 15574
4 JGI25150J39212_1000092 3300002774 Bacteria 51251
5 JGI25151J46595_10000007 3300003187 Bacteria 411751
6 JGI25165J46597_1000490 3300003214 Bacteria 38158
7 JGI25153J46596_10000313 3300003215 Bacteria 35777
8 Ga0055536_1001570 3300003781 Bacteria 13668
9 Ga0055530_10002027 3300003791 Bacteria 13694
10 Ga0070658_10118381 3300005327 Bacteria 2199
11 Ga0070658_10504035 3300005327 Bacteria 1046
12 Ga0070660_100035362 3300005339 Bacteria 3781
13 Ga0068854_100002360 3300005578 Bacteria 11640
14 Ga0105248_10023622 3300009177 Bacteria 6830
15 Ga0123341_1000025 3300009765 Bacteria 71692
16 Ga0123342_1015746 3300009766 Bacteria 6777
17 Ga0157370_10001520 3300013104 Bacteria 28677
18 Ga0213872_10002466 3300021361 Bacteria 10850
19 Ga0209437_100326 3300025233 Bacteria 60536
20 Ga0207425_1000018 3300025245 Bacteria 411841
21 Ga0209148_1002919 3300025254 Bacteria 5199
22 Ga0209129_1000026 3300025258 Bacteria 411839
23 Ga0209233_1000384 3300025261 Bacteria 38210
24 Ga0209455_1000383 3300025272 Bacteria 39626
25 Ga0209673_1002767 3300025273 Bacteria 11441
26 Ga0209676_1000253 3300025292 Bacteria 113412
27 Ga0209025_1000035 3300025294 Bacteria 411841
28 Ga0209564_1037193 3300025295 Bacteria 1376
29 Ga0209758_1000040 3300025297 Bacteria 411841
30 Ga0209050_1000649 3300025298 Bacteria 53856
31 Ga0209051_1002693 3300025303 Bacteria 12365
32 Ga0209257_1007938 3300025304 Bacteria 6224
33 Ga0207705_10100520 3300025909 Bacteria 2127
34 Ga0207705_10179339 3300025909 Bacteria 1598
35 Ga0207695_10009402 3300025913 Bacteria 12092
36 Ga0207671_10009675 3300025914 Bacteria 8028
37 Ga0207657_10249102 3300025919 Bacteria 1417
38 Ga0207711_10025991 3300025941 Bacteria 4911
39 Ga0207667_10274392 3300025949 Bacteria 1724
40 Ga0207640_10003107 3300025981 Bacteria 8926
41 Ga0307515_10004874 3300028794 Bacteria 27441
42 Ga0307408_100116423 3300031548 Bacteria 2063
43 Ga0307413_10234231 3300031824 Bacteria 1351
44 Ga0307412_10000755 3300031911 Bacteria 18765
45 Ga0307412_10005095 3300031911 Bacteria 7349
46 Ga0307416_100054386 3300032002 Bacteria 3218
47 Ga0307414_10168113 3300032004 Bacteria 1750
48 Ga0395900_0300078 3300037418 Bacteria 1593
49 Ga0395898_0102397 3300037466 Bacteria 2749
50 Ga0436361_1098031 3300039447 Bacteria 8212
51 Ga0439465_0081730 3300041413 Bacteria 1096
52 Ga0451849_0238051 3300041505 Bacteria 2230
53 Ga0451853_0246430 3300041512 Bacteria 2159
54 Ga0495638_0000029 3300046460 Bacteria 330201
55 Ga0495638_0062216 3300046460 Bacteria 2304
56 Ga0495596_0000301 3300046500 Bacteria 32732
57 Ga0495583_0000443 3300046506 Bacteria 62113
58 Ga0495583_0006761 3300046506 Bacteria 7414
59 Ga0495583_0016501 3300046506 Bacteria 3966
60 Ga0495606_0084859 3300046507 Bacteria 1960
61 Ga0495616_0036094 3300046513 Bacteria 2553
62 Ga0495632_0000220 3300046519 Bacteria 58010
63 Ga0495637_0073453 3300046520 Bacteria 1376
64 Ga0495643_0002577 3300046522 Bacteria 14164
65 Ga0495643_0003145 3300046522 Bacteria 12288
66 Ga0495643_0019389 3300046522 Bacteria 3935
67 Ga0495643_0033913 3300046522 Bacteria 2820
68 Ga0495643_0057321 3300046522 Bacteria 2076
69 Ga0495648_0000020 3300046524 Bacteria 254330
70 Ga0495609_0004392 3300046538 Bacteria 7735
71 Ga0495609_0077803 3300046538 Bacteria 1452
72 Ga0495597_0009161 3300046542 Bacteria 4910
73 Ga0495597_0039145 3300046542 Bacteria 2124
74 Ga0495633_0135913 3300046558 Unclassified 1137
75 Ga0495668_0000040 3300046616 Bacteria 230681
76 Ga0495668_0012532 3300046616 Bacteria 5028
77 Ga0495668_0099571 3300046616 Bacteria 1590
78 Ga0495611_0165969 3300046648 Bacteria 1032
79 Ga0495625_0004108 3300046660 Bacteria 13886
80 Ga0495625_0014907 3300046660 Bacteria 6181
81 Ga0495625_0106619 3300046660 Bacteria 1918
82 Ga0495625_0107708 3300046660 Bacteria 1907
83 Ga0495625_0109745 3300046660 Bacteria 1887
84 Ga0495671_0000022 3300046692 Bacteria 255591
85 Ga0495649_0011136 3300046694 Bacteria 5292
86 Ga0495687_005963 3300047443 Bacteria 7601
87 Ga0495673_0000051 3300047469 Bacteria 255511
88 Ga0495673_0000277 3300047469 Bacteria 69419
89 Ga0495686_0050749 3300047472 Bacteria 2606
90 Ga0495615_0000021 3300048090 Bacteria 52484
91 Ga0495626_0069580 3300048091 Bacteria 1585
92 Ga0496101_0111428 3300048904 Bacteria 2060
93 Ga0496102_0000424 3300048905 Bacteria 48826
94 Ga0496103_0000395 3300048906 Bacteria 38785
95 Ga0496113_0313450 3300048916 Bacteria 1257
96 Ga0496116_0000486 3300048919 Bacteria 54596
97 Ga0496117_0000824 3300048920 Bacteria 48048
98 Ga0496117_0028624 3300048920 Bacteria 4312
99 Ga0496117_0074683 3300048920 Bacteria 2256
100 Ga0496117_0106506 3300048920 Bacteria 1759
101 Ga0496118_0000133 3300048921 Bacteria 131319
102 Ga0496118_0011456 3300048921 Bacteria 8653
103 Ga0496118_0034686 3300048921 Bacteria 4111
104 Ga0496118_0127896 3300048921 Bacteria 1638
105 Ga0496119_0017431 3300048922 Bacteria 5400
106 Ga0496119_0051405 3300048922 Bacteria 2533
107 Ga0496119_0052575 3300048922 Bacteria 2494
108 Ga0496120_0004826 3300048923 Bacteria 11032
109 Ga0496120_0008477 3300048923 Bacteria 7457
110 Ga0496120_0067074 3300048923 Unclassified 1983
111 Ga0496120_0102786 3300048923 Bacteria 1507
112 Ga0496121_0106888 3300048924 Bacteria 2144
113 Ga0496121_0142061 3300048924 Bacteria 1779
114 Ga0496122_0003091 3300048925 Bacteria 22375
115 Ga0496122_0031573 3300048925 Bacteria 4405
116 Ga0496123_0000386 3300048926 Bacteria 82804
117 Ga0496123_0016042 3300048926 Bacteria 6107
118 Ga0496123_0044875 3300048926 Bacteria 3017
119 Ga0496123_0198728 3300048926 Bacteria 1030
120 Ga0496124_0000903 3300048927 Bacteria 48007
121 Ga0496124_0002964 3300048927 Bacteria 21304
122 Ga0496124_0004042 3300048927 Bacteria 17417
123 Ga0496124_0013540 3300048927 Bacteria 7953
124 Ga0496124_0296142 3300048927 Bacteria 1171
125 Ga0496125_0016051 3300048928 Bacteria 7209
126 Ga0496125_0040548 3300048928 Bacteria 3993
127 Ga0496125_0282273 3300048928 Bacteria 1028
128 Ga0496126_0005604 3300048929 Bacteria 14276
129 Ga0496126_0010364 3300048929 Bacteria 9784
130 Ga0496126_0042641 3300048929 Bacteria 4190
131 Ga0501037_0125257 3300049573 Bacteria 1845
132 nmdc:mga0sz30_54355_c1 3300050516 Bacteria 1703
133 Ga0500643_013692 3300053087 Bacteria 2852
134 Ga0500644_0005061 3300053088 Bacteria 3320
135 Ga0500646_0033508 3300053090 Bacteria 1421
136 Ga0500651_0004116 3300053093 Bacteria 8104
137 Ga0500556_0000734 3300053104 Bacteria 19756
138 Ga0500608_000348 3300053122 Bacteria 17856
139 Ga0500614_002878 3300053123 Bacteria 3781
140 Ga0500655_000088 3300053133 Bacteria 24231
141 Ga0500658_0220684 3300053134 Bacteria 869
142 Ga0500559_0002134 3300053136 Bacteria 10525
143 Ga0500559_0006211 3300053136 Bacteria 5406
144 Ga0500616_0000450 3300053153 Bacteria 53930
145 Ga0500622_0003642 3300053156 Bacteria 10130
146 Ga0500661_000536 3300055283 Bacteria 7059

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046558 Ga0495633_0135913 Ga0495633_0135913_13_780 252
2 3300049573 Ga0501037_0125257 Ga0501037_0125257_11_862 261
3 3300053134 Ga0500658_0220684 Ga0500658_0220684_37_837 261
4 3300050516 nmdc:mga0sz30_54355_c1 nmdc:mga0sz30_54355_c1_12_905 268
5 3300025295 Ga0209564_1037193 Ga0209564_10371931 275
6 3300046660 Ga0495625_0106619 Ga0495625_0106619_308_1234 275
7 3300046660 Ga0495625_0107708 Ga0495625_0107708_604_1530 275
8 3300046616 Ga0495668_0000040 Ga0495668_0000040_6439_7359 276
9 3300002737 JGI25162J39368_1001814 JGI25162J39368_10018147 277
10 3300003214 JGI25165J46597_1000490 JGI25165J46597_100049020 277
11 3300046616 Ga0495668_0012532 Ga0495668_0012532_4059_4985 277
12 3300003781 Ga0055536_1001570 Ga0055536_10015702 279
13 3300003791 Ga0055530_10002027 Ga0055530_100020272 279
14 3300025292 Ga0209676_1000253 Ga0209676_100025315 279
15 3300025298 Ga0209050_1000649 Ga0209050_100064920 279
16 3300025303 Ga0209051_1002693 Ga0209051_10026933 279
17 3300025304 Ga0209257_1007938 Ga0209257_10079382 279
18 3300053090 Ga0500646_0033508 Ga0500646_0033508_137_1042 280
19 3300053122 Ga0500608_000348 Ga0500608_000348_9280_10227 280
20 3300053136 Ga0500559_0006211 Ga0500559_0006211_3392_4339 280
21 3300009765 Ga0123341_1000025 Ga0123341_100002562 281
22 3300009766 Ga0123342_1015746 Ga0123342_10157462 281
23 3300046460 Ga0495638_0062216 Ga0495638_0062216_117_1028 281
24 3300046506 Ga0495583_0006761 Ga0495583_0006761_3831_4751 282
25 3300046513 Ga0495616_0036094 Ga0495616_0036094_934_1854 282
26 3300046520 Ga0495637_0073453 Ga0495637_0073453_16_936 282
27 3300046522 Ga0495643_0002577 Ga0495643_0002577_2666_3586 282
28 3300046542 Ga0495597_0039145 Ga0495597_0039145_871_1791 282
29 3300046660 Ga0495625_0014907 Ga0495625_0014907_2578_3498 282
30 3300046694 Ga0495649_0011136 Ga0495649_0011136_1480_2400 282
31 3300047443 Ga0495687_005963 Ga0495687_005963_1985_2905 282
32 3300047472 Ga0495686_0050749 Ga0495686_0050749_712_1632 282
33 3300048091 Ga0495626_0069580 Ga0495626_0069580_139_1059 282
34 3300053088 Ga0500644_0005061 Ga0500644_0005061_1055_1981 282
35 3300053153 Ga0500616_0000450 Ga0500616_0000450_48811_49731 282
36 3300053156 Ga0500622_0003642 Ga0500622_0003642_935_1861 282
37 3300031824 Ga0307413_10234231 Ga0307413_102342312 283
38 3300048927 Ga0496124_0296142 Ga0496124_0296142_75_980 283
39 3300025233 Ga0209437_100326 Ga0209437_10032643 284
40 3300025261 Ga0209233_1000384 Ga0209233_100038419 284
41 3300032002 Ga0307416_100054386 Ga0307416_1000543864 284
42 3300041413 Ga0439465_0081730 Ga0439465_0081730_120_1037 284
43 3300046500 Ga0495596_0000301 Ga0495596_0000301_8512_9414 284
44 3300046506 Ga0495583_0016501 Ga0495583_0016501_1432_2334 284
45 3300046522 Ga0495643_0019389 Ga0495643_0019389_1855_2757 284
46 3300046538 Ga0495609_0004392 Ga0495609_0004392_5603_6505 284
47 3300046538 Ga0495609_0077803 Ga0495609_0077803_302_1210 284
48 3300046660 Ga0495625_0004108 Ga0495625_0004108_9250_10152 284
49 3300048904 Ga0496101_0111428 Ga0496101_0111428_881_1792 284
50 3300048920 Ga0496117_0028624 Ga0496117_0028624_2875_3786 284
51 3300048921 Ga0496118_0011456 Ga0496118_0011456_2105_3016 284
52 3300048923 Ga0496120_0102786 Ga0496120_0102786_408_1319 284
53 3300048924 Ga0496121_0106888 Ga0496121_0106888_683_1594 284
54 3300048928 Ga0496125_0016051 Ga0496125_0016051_583_1494 284
55 3300048928 Ga0496125_0040548 Ga0496125_0040548_2908_3852 284
56 3300048929 Ga0496126_0010364 Ga0496126_0010364_269_1213 284
57 3300048929 Ga0496126_0042641 Ga0496126_0042641_1178_2089 284
58 3300002773 JGI25152J39213_1000814 JGI25152J39213_10008144 285
59 3300002774 JGI25150J39212_1000092 JGI25150J39212_100009211 285
60 3300003187 JGI25151J46595_10000007 JGI25151J46595_1000000737 285
61 3300003215 JGI25153J46596_10000313 JGI25153J46596_1000031328 285
62 3300025245 Ga0207425_1000018 Ga0207425_1000018293 285
63 3300025258 Ga0209129_1000026 Ga0209129_100002636 285
64 3300025273 Ga0209673_1002767 Ga0209673_100276710 285
65 3300025294 Ga0209025_1000035 Ga0209025_100003536 285
66 3300025297 Ga0209758_1000040 Ga0209758_100004036 285
67 3300031911 Ga0307412_10005095 Ga0307412_100050956 285
68 3300041505 Ga0451849_0238051 Ga0451849_0238051_1104_2021 285
69 3300041512 Ga0451853_0246430 Ga0451853_0246430_419_1333 285
70 3300048922 Ga0496119_0017431 Ga0496119_0017431_2650_3576 285
71 3300053104 Ga0500556_0000734 Ga0500556_0000734_2037_2957 285
72 3300046522 Ga0495643_0003145 Ga0495643_0003145_5699_6601 286
73 3300047469 Ga0495673_0000277 Ga0495673_0000277_37037_37963 286
74 iso_pu_bacteria 2841846520 2841851304 286
75 iso_pu_bacteria 2842124991 2842129279 286
76 iso_pu_bacteria 2842264693 2842265248 286
77 iso_pu_bacteria 2842428310 2842428699 286
78 iso_pu_bacteria 2842434925 2842435312 286
79 iso_pu_bacteria 2842441272 2842441825 286
80 iso_pu_bacteria 2842469257 2842469643 286
81 3300053123 Ga0500614_002878 Ga0500614_002878_2225_3145 287
82 iso_pu_bacteria 2599185359 2600227333 291
83 iso_pu_bacteria 2818991466 2819715861 291
84 iso_pu_bacteria 2928526807 2928529905 291
85 iso_pu_bacteria 2928968154 2928970676 291
86 3300021361 Ga0213872_10002466 Ga0213872_100024664 292
87 3300039447 Ga0436361_1098031 Ga0436361_1098031_2722_3609 292
88 iso_pu_bacteria 2643221605 2644039054 294
89 3300005578 Ga0068854_100002360 Ga0068854_1000023608 295
90 3300025914 Ga0207671_10009675 Ga0207671_100096754 295
91 3300025981 Ga0207640_10003107 Ga0207640_100031078 295
92 3300031911 Ga0307412_10000755 Ga0307412_1000075515 295
93 3300032004 Ga0307414_10168113 Ga0307414_101681132 295
94 3300048922 Ga0496119_0051405 Ga0496119_0051405_486_1373 295
95 3300048923 Ga0496120_0004826 Ga0496120_0004826_5003_5890 295
96 3300048926 Ga0496123_0044875 Ga0496123_0044875_1185_2072 295
97 3300048927 Ga0496124_0002964 Ga0496124_0002964_14681_15568 295
98 3300048927 Ga0496124_0004042 Ga0496124_0004042_13121_14008 295
99 3300048928 Ga0496125_0282273 Ga0496125_0282273_69_956 295
100 3300048929 Ga0496126_0005604 Ga0496126_0005604_11698_12585 295
101 iso_pu_bacteria 2510917021 2511131116 295
102 iso_pu_bacteria 2582581305 2585264011 295
103 iso_pu_bacteria 2842333319 2842336097 295
104 3300031548 Ga0307408_100116423 Ga0307408_1001164233 296
105 3300046648 Ga0495611_0165969 Ga0495611_0165969_70_963 296
106 3300048916 Ga0496113_0313450 Ga0496113_0313450_124_1035 296
107 3300053087 Ga0500643_013692 Ga0500643_013692_1083_1976 296
108 3300053136 Ga0500559_0002134 Ga0500559_0002134_897_1790 296
109 3300055283 Ga0500661_000536 Ga0500661_000536_976_1869 296
110 iso_pu_bacteria 2509276021 2509386028 296
111 3300028794 Ga0307515_10004874 Ga0307515_1000487411 297
112 3300046522 Ga0495643_0033913 Ga0495643_0033913_794_1705 297
113 3300048926 Ga0496123_0198728 Ga0496123_0198728_73_984 297
114 iso_pu_bacteria 2513237138 2513868234 297
115 iso_pu_bacteria 2513237144 2513909268 297
116 iso_pu_bacteria 2513237159 2514000535 297
117 iso_pu_bacteria 2515154107 2515608435 297
118 iso_pu_bacteria 2515154113 2515632131 297
119 iso_pu_bacteria 2515154113 2515634392 297
120 iso_pu_bacteria 2524023207 2524451531 297
121 iso_pu_bacteria 2529292951 2530646256 297
122 iso_pu_bacteria 2534681796 2535518456 297
123 iso_pu_bacteria 2558860100 2558861132 297
124 iso_pu_bacteria 2558860242 2559298554 297
125 iso_pu_bacteria 2582581866 2585397128 297
126 iso_pu_bacteria 2582581867 2585403937 297
127 iso_pu_bacteria 2585427590 2585825168 297
128 iso_pu_bacteria 2615840624 2616297814 297
129 iso_pu_bacteria 2667528174 2671116933 297
130 iso_pu_bacteria 2718217997 2719668408 297
131 iso_pu_bacteria 2718218199 2720489101 297
132 iso_pu_bacteria 2718218232 2720609793 297
133 iso_pu_bacteria 2718218233 2720617224 297
134 iso_pu_bacteria 2718218235 2720628365 297
135 iso_pu_bacteria 2718218269 2720772320 297
136 iso_pu_bacteria 2721755556 2723029740 297
137 iso_pu_bacteria 2721755684 2723564109 297
138 iso_pu_bacteria 2721755685 2723570197 297
139 iso_pu_bacteria 2721755819 2724092349 297
140 iso_pu_bacteria 2721755822 2724101744 297
141 iso_pu_bacteria 2721755823 2724112724 297
142 iso_pu_bacteria 2728369352 2730110273 297
143 iso_pu_bacteria 2738541293 2738799947 297
144 iso_pu_bacteria 2757320392 2757571982 297
145 iso_pu_bacteria 2791355259 2793314976 297
146 iso_pu_bacteria 2791355261 2793331399 297
147 iso_pu_bacteria 2791355264 2793345876 297
148 iso_pu_bacteria 2791355265 2793356978 297
149 iso_pu_bacteria 2818991457 2819660978 297
150 iso_pu_bacteria 2821123053 2821130529 297
151 iso_pu_bacteria 2838016132 2838016376 297
152 iso_pu_bacteria 2838048938 2838049513 297
153 iso_pu_bacteria 2838061910 2838065242 297
154 iso_pu_bacteria 2838068647 2838068911 297
155 iso_pu_bacteria 2838661181 2838666589 297
156 iso_pu_bacteria 2838714209 2838719433 297
157 iso_pu_bacteria 2838719591 2838724853 297
158 iso_pu_bacteria 2842170452 2842175679 297
159 iso_pu_bacteria 2842187318 2842192579 297
160 iso_pu_bacteria 2842211629 2842216888 297
161 iso_pu_bacteria 2842224351 2842229572 297
162 iso_pu_bacteria 2842311132 2842313388 297
163 iso_pu_bacteria 2842395702 2842401456 297
164 iso_pu_bacteria 2842422224 2842423057 297
165 iso_pu_bacteria 2842447887 2842448130 297
166 iso_pu_bacteria 2842462802 2842463123 297
167 iso_pu_bacteria 2842521101 2842523520 297
168 iso_pu_bacteria 2849573788 2849576456 297
169 iso_pu_bacteria 2857516855 2857522845 297
170 iso_pu_bacteria 2857531043 2857535774 297
171 iso_pu_bacteria 2919114240 2919119609 297
172 iso_pu_bacteria 2920760137 2920766843 297
173 iso_pu_bacteria 2926754445 2926759792 297
174 iso_pu_bacteria 2933599457 2933599579 297
175 iso_pu_bacteria 2936367885 2936371240 297
176 iso_pu_bacteria 2936375103 2936375557 297
177 iso_pu_bacteria 2936996657 2937002449 297
178 iso_pu_bacteria 8005282627 8005288753 297
179 iso_pu_bacteria 8005289223 8005290951 297
180 iso_pu_bacteria 8005314921 8005320927 297
181 iso_pu_bacteria 8005382845 8005386480 297
182 iso_pu_bacteria 8005395548 8005396385 297
183 iso_pu_bacteria 8005430974 8005431784 297
184 iso_pu_bacteria 8005497431 8005502615 297
185 iso_pu_bacteria 8005542996 8005549376 297
186 iso_pu_bacteria 8005619151 8005623823 297
187 iso_pu_bacteria 8005626139 8005626382 297
188 iso_pu_bacteria 8005668836 8005674044 297
189 iso_pu_bacteria 8005695170 8005696532 297
190 iso_pu_bacteria 8018127388 8018132084 297
191 iso_pu_bacteria 8023680758 8023682188 297
192 iso_pu_bacteria 8056382006 8056382957 297
193 3300005327 Ga0070658_10118381 Ga0070658_101183812 298
194 3300005327 Ga0070658_10504035 Ga0070658_105040351 298
195 3300009177 Ga0105248_10023622 Ga0105248_100236226 298
196 3300013104 Ga0157370_10001520 Ga0157370_100015209 298
197 3300025909 Ga0207705_10100520 Ga0207705_101005203 298
198 3300025909 Ga0207705_10179339 Ga0207705_101793392 298
199 3300025913 Ga0207695_10009402 Ga0207695_100094022 298
200 3300025941 Ga0207711_10025991 Ga0207711_100259916 298
201 3300025949 Ga0207667_10274392 Ga0207667_102743922 298
202 3300037418 Ga0395900_0300078 Ga0395900_0300078_75_971 298
203 3300037466 Ga0395898_0102397 Ga0395898_0102397_685_1581 298
204 3300046460 Ga0495638_0000029 Ga0495638_0000029_293145_294041 298
205 3300046506 Ga0495583_0000443 Ga0495583_0000443_25276_26172 298
206 3300046507 Ga0495606_0084859 Ga0495606_0084859_617_1513 298
207 3300046519 Ga0495632_0000220 Ga0495632_0000220_35823_36719 298
208 3300046524 Ga0495648_0000020 Ga0495648_0000020_217293_218189 298
209 3300046616 Ga0495668_0099571 Ga0495668_0099571_220_1116 298
210 3300046692 Ga0495671_0000022 Ga0495671_0000022_218518_219414 298
211 3300047469 Ga0495673_0000051 Ga0495673_0000051_36198_37094 298
212 3300048905 Ga0496102_0000424 Ga0496102_0000424_23358_24254 298
213 3300048906 Ga0496103_0000395 Ga0496103_0000395_15109_16005 298
214 3300048919 Ga0496116_0000486 Ga0496116_0000486_38694_39590 298
215 3300048920 Ga0496117_0000824 Ga0496117_0000824_22774_23670 298
216 3300048920 Ga0496117_0074683 Ga0496117_0074683_536_1432 298
217 3300048920 Ga0496117_0106506 Ga0496117_0106506_138_1034 298
218 3300048921 Ga0496118_0000133 Ga0496118_0000133_22781_23677 298
219 3300048921 Ga0496118_0034686 Ga0496118_0034686_1366_2262 298
220 3300048921 Ga0496118_0127896 Ga0496118_0127896_216_1112 298
221 3300048923 Ga0496120_0067074 Ga0496120_0067074_447_1343 298
222 3300048925 Ga0496122_0031573 Ga0496122_0031573_125_1021 298
223 3300048926 Ga0496123_0016042 Ga0496123_0016042_4826_5722 298
224 3300048927 Ga0496124_0000903 Ga0496124_0000903_24331_25227 298
225 iso_pu_bacteria 2513237087 2513591234 298
226 iso_pu_bacteria 2585428106 2587917086 298
227 iso_pu_bacteria 2599185354 2600202986 298
228 iso_pu_bacteria 2643221640 2644223709 298
229 iso_pu_bacteria 2643221642 2644236203 298
230 iso_pu_bacteria 2857504554 2857506104 298
231 iso_pu_bacteria 2884960567 2884963479 298
232 iso_pu_bacteria 2928531327 2928534598 298
233 3300002067 JGI24735J21928_10011589 JGI24735J21928_100115893 299
234 3300005339 Ga0070660_100035362 Ga0070660_1000353622 299
235 3300025254 Ga0209148_1002919 Ga0209148_10029195 299
236 3300025272 Ga0209455_1000383 Ga0209455_100038314 299
237 3300025919 Ga0207657_10249102 Ga0207657_102491022 299
238 3300046522 Ga0495643_0057321 Ga0495643_0057321_231_1139 299
239 3300046542 Ga0495597_0009161 Ga0495597_0009161_3987_4895 299
240 3300046660 Ga0495625_0109745 Ga0495625_0109745_245_1153 299
241 3300048090 Ga0495615_0000021 Ga0495615_0000021_10055_10957 299
242 3300048922 Ga0496119_0052575 Ga0496119_0052575_452_1354 299
243 3300048923 Ga0496120_0008477 Ga0496120_0008477_183_1085 299
244 3300048924 Ga0496121_0142061 Ga0496121_0142061_29_931 299
245 3300048925 Ga0496122_0003091 Ga0496122_0003091_15483_16385 299
246 3300048926 Ga0496123_0000386 Ga0496123_0000386_16943_17845 299
247 3300048927 Ga0496124_0013540 Ga0496124_0013540_4577_5479 299
248 3300053093 Ga0500651_0004116 Ga0500651_0004116_3495_4403 299
249 3300053133 Ga0500655_000088 Ga0500655_000088_20684_21592 299

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

6

64

0.98

PF03466

LysR_substrate

LysR substrate binding domain

86

293

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.9638 4 83
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9624 4 83
4ihs-assembly1.cif.gz_B crystal structure of benm_dbd/catb site 1 dna complex 0.9371 4 83
5z4z-assembly1.cif.gz_A crystal structure of pacysb ntd domain with space group c2 0.9153 4 83
3hhf-assembly1.cif.gz_A structure of crga regulatory domain, a lysr-type transcriptional regulator from neisseria meningitidis. 0.9148 91 295
ID Description Score Start End Superfamily
af_P77700_7_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9806 6 84 1.10.10.10
af_P77744_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9753 4 84 1.10.10.10
af_P9WMF3_10_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.974 6 84 1.10.10.10
af_P76250_6_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9725 5 84 1.10.10.10
af_P23841_7_96_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9714 5 84 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3D5N4X1-F1-model_v4 LysR family transcriptional regulator 0.9059 148 295 GO:0003700
GO:0006351
GO:0043565
AF-A0A4Q5XXI8-F1-model_v4 deleted 0.9021 108 292
AF-A0A410RXX3-F1-model_v4 LysR family transcriptional regulator 0.9018 125 292
AF-A0A3M2XMB2-F1-model_v4 Transcriptional regulator, LysR family 0.8971 117 292 GO:0003700
GO:0006351
GO:0043565
AF-A0A4D4IQK1-F1-model_v4 deleted 0.8954 5 292

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pLDDT pTM Quality
85.16 0.66 Medium
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Predicted Structure (AlphaFold2)

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