F360712

General Info

Members Datasets Scaffolds Average Seq Length
249 138 246 212

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10659535|Ga0114129_106595351
Length 245
Sequence VKRTVRAACFPLSLIRRVEVKYEVPTRSSALGSLMSTEPHVIRILAVDDHALLREGIAALIAAEPGMQLVAACSDGREAIQQFRAFRPDVTLMDLQMPDMTGLDAMIAIRGEFPDARIVVLSSYAGDAQVVRALKAGASGYLLKNLVHKELLDTIRSVYAGRRTLSPEVSIDLATHATDDPLTPAEIEVLRLIASGNGNKQIADKLGITEDTVKGRVRSILSKLGANDRTHATTIGLKRGIIQLM

Samples

Sample ID Description Type Environment
1 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
28 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
39 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
40 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
41 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
42 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
53 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
60 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
61 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
62 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
63 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
67 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
104 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
108 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
109 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
110 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
111 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
112 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
113 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
114 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
115 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
116 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
117 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
118 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
119 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
120 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
121 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
122 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
123 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
124 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
127 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
128 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
136 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
137 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
138 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.6
Metatranscriptomes 0
Isolates 0.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.4
Nodule 0
Rhizoplane 5.22
Rhizosphere 91.97
Stem 0
Stem Tuber 0
Unclassified 2.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065715_10106813 3300005293 Bacteria 2807
2 Ga0065715_10117712 3300005293 Bacteria 2338
3 Ga0065707_10393882 3300005295 Bacteria 861
4 Ga0070676_10049900 3300005328 Bacteria 2451
5 Ga0070677_10050844 3300005333 Bacteria 1675
6 Ga0068869_100011890 3300005334 Bacteria 5725
7 Ga0068868_100037257 3300005338 Bacteria 3769
8 Ga0070689_100039814 3300005340 Bacteria 3600
9 Ga0070661_100011573 3300005344 Bacteria 6149
10 Ga0070669_100431176 3300005353 Bacteria 1083
11 Ga0070671_100157643 3300005355 Bacteria 1918
12 Ga0070673_100094366 3300005364 Bacteria 2452
13 Ga0070688_100057372 3300005365 Bacteria 2447
14 Ga0070667_100260519 3300005367 Bacteria 1552
15 Ga0070709_10174762 3300005434 Bacteria 1504
16 Ga0070711_100024313 3300005439 Unclassified 3950
17 Ga0070708_100075491 3300005445 Bacteria 3043
18 Ga0070708_100602849 3300005445 Bacteria 1035
19 Ga0070678_100681520 3300005456 Bacteria 924
20 Ga0070662_100075548 3300005457 Bacteria 2495
21 Ga0068867_100839779 3300005459 Unclassified 822
22 Ga0070685_10024066 3300005466 Unclassified 3342
23 Ga0070698_100356200 3300005471 Unclassified 1395
24 Ga0070698_100440823 3300005471 Bacteria 1238
25 Ga0070699_100179846 3300005518 Bacteria 1876
26 Ga0070699_100366413 3300005518 Bacteria 1299
27 Ga0070697_100016782 3300005536 Bacteria 5759
28 Ga0070697_100038954 3300005536 Bacteria 3841
29 Ga0070697_100085828 3300005536 Unclassified 2597
30 Ga0070672_100139803 3300005543 Bacteria 1996
31 Ga0070686_100018447 3300005544 Unclassified 4095
32 Ga0070696_100457310 3300005546 Bacteria 1008
33 Ga0070696_100984613 3300005546 Bacteria 704
34 Ga0070693_100180307 3300005547 Unclassified 1359
35 Ga0070665_100469160 3300005548 Unclassified 1269
36 Ga0068859_100047075 3300005617 Unclassified 4332
37 Ga0068859_100192242 3300005617 Unclassified 2125
38 Ga0068859_101010168 3300005617 Unclassified 914
39 Ga0068859_101286679 3300005617 Bacteria 806
40 Ga0068864_100045092 3300005618 Bacteria 3782
41 Ga0068866_10052521 3300005718 Bacteria 2080
42 Ga0068861_100053367 3300005719 Unclassified 3075
43 Ga0068870_10001707 3300005840 Bacteria 8985
44 Ga0068863_100002837 3300005841 Bacteria 17161
45 Ga0068863_100019816 3300005841 Bacteria 6434
46 Ga0068863_100063557 3300005841 Unclassified 3491
47 Ga0068863_100072808 3300005841 Bacteria 3251
48 Ga0068863_100183100 3300005841 Bacteria 2011
49 Ga0068863_100626007 3300005841 Bacteria 1066
50 Ga0068863_100769872 3300005841 Unclassified 959
51 Ga0068860_100006488 3300005843 Bacteria 11747
52 Ga0068860_100397810 3300005843 Bacteria 1362
53 Ga0081539_10000012 3300005985 Bacteria 440369
54 Ga0075432_10013715 3300006058 Bacteria 2756
55 Ga0070715_10070672 3300006163 Unclassified 1559
56 Ga0070716_100158855 3300006173 Bacteria 1462
57 Ga0070712_100048303 3300006175 Bacteria 2949
58 Ga0097621_100068051 3300006237 Bacteria 2936
59 Ga0068871_100230870 3300006358 Bacteria 1606
60 Ga0068871_100494282 3300006358 Bacteria 1102
61 Ga0075428_100005382 3300006844 Bacteria 14234
62 Ga0075428_100141608 3300006844 Bacteria 2614
63 Ga0075428_100317806 3300006844 Bacteria 1673
64 Ga0075428_100327165 3300006844 Bacteria 1647
65 Ga0075428_100916889 3300006844 Bacteria 929
66 Ga0075430_100005305 3300006846 Bacteria 10876
67 Ga0075430_100059412 3300006846 Bacteria 3214
68 Ga0075431_100001350 3300006847 Bacteria 22456
69 Ga0075431_100011678 3300006847 Bacteria 8861
70 Ga0075431_100015179 3300006847 Bacteria 7804
71 Ga0075431_100022690 3300006847 Bacteria 6415
72 Ga0075433_10183974 3300006852 Bacteria 1859
73 Ga0075433_10221379 3300006852 Bacteria 1681
74 Ga0075433_10566696 3300006852 Bacteria 998
75 Ga0075434_100006845 3300006871 Bacteria 10495
76 Ga0075434_100144767 3300006871 Bacteria 2397
77 Ga0075434_100186342 3300006871 Bacteria 2096
78 Ga0075434_100480455 3300006871 Bacteria 1264
79 Ga0075429_100070938 3300006880 Bacteria 3033
80 Ga0075429_100117029 3300006880 Bacteria 2329
81 Ga0075429_100119044 3300006880 Bacteria 2308
82 Ga0075429_100368255 3300006880 Bacteria 1258
83 Ga0075436_100072228 3300006914 Bacteria 2387
84 Ga0097620_100047075 3300006931 Unclassified 4332
85 Ga0097620_100192242 3300006931 Unclassified 2125
86 Ga0097620_101010131 3300006931 Unclassified 914
87 Ga0097620_101286537 3300006931 Bacteria 806
88 Ga0075435_100005701 3300007076 Bacteria 8727
89 Ga0075435_100427882 3300007076 Unclassified 1140
90 Ga0075435_100696425 3300007076 Bacteria 883
91 Ga0099795_10054894 3300007788 Unclassified 1462
92 Ga0111539_10006011 3300009094 Bacteria 15687
93 Ga0111539_10145591 3300009094 Unclassified 2774
94 Ga0111539_10384478 3300009094 Bacteria 1634
95 Ga0105245_10339409 3300009098 Unclassified 1485
96 Ga0105245_10755489 3300009098 Bacteria 1008
97 Ga0114129_10035364 3300009147 Bacteria 7057
98 Ga0114129_10084895 3300009147 Bacteria 4394
99 Ga0114129_10132572 3300009147 Bacteria 3421
100 Ga0114129_10257409 3300009147 Bacteria 2341
101 Ga0114129_10290712 3300009147 Bacteria 2181
102 Ga0114129_10309114 3300009147 Bacteria 2104
103 Ga0114129_10659535 3300009147 Bacteria 1349
104 Ga0114129_10741835 3300009147 Bacteria 1258
105 Ga0114129_11180106 3300009147 Bacteria 955
106 Ga0105242_10151741 3300009176 Bacteria 2021
107 Ga0105248_10012586 3300009177 Bacteria 9334
108 Ga0105248_10027983 3300009177 Bacteria 6278
109 Ga0105249_10176772 3300009553 Bacteria 2074
110 Ga0105249_11189734 3300009553 Unclassified 833
111 Ga0157371_10328050 3300013102 Bacteria 1111
112 Ga0157374_10163180 3300013296 Bacteria 2171
113 Ga0157378_10001131 3300013297 Bacteria 24300
114 Ga0157378_10183287 3300013297 Unclassified 1971
115 Ga0163162_10001735 3300013306 Bacteria 20432
116 Ga0163162_10019511 3300013306 Bacteria 6652
117 Ga0163162_11141663 3300013306 Bacteria 883
118 Ga0157380_10017576 3300014326 Bacteria 5292
119 Ga0157379_10086886 3300014968 Bacteria 2804
120 Ga0157379_10167935 3300014968 Bacteria 1981
121 Ga0213875_10000600 3300021388 Bacteria 29159
122 Ga0213875_10002149 3300021388 Bacteria 12031
123 Ga0207697_10013535 3300025315 Bacteria 3402
124 Ga0207682_10008266 3300025893 Unclassified 4121
125 Ga0207692_10137392 3300025898 Unclassified 1387
126 Ga0207642_10016300 3300025899 Unclassified 2795
127 Ga0207688_10008883 3300025901 Bacteria 5469
128 Ga0207680_10041096 3300025903 Bacteria 2696
129 Ga0207699_10237547 3300025906 Unclassified 1251
130 Ga0207699_10391709 3300025906 Bacteria 988
131 Ga0207645_10059204 3300025907 Bacteria 2446
132 Ga0207643_10020193 3300025908 Bacteria 3655
133 Ga0207684_10012843 3300025910 Bacteria 7255
134 Ga0207684_10539298 3300025910 Bacteria 999
135 Ga0207649_10012213 3300025920 Bacteria 4757
136 Ga0207646_10001333 3300025922 Bacteria 30686
137 Ga0207646_10292547 3300025922 Bacteria 1472
138 Ga0207646_10596263 3300025922 Bacteria 992
139 Ga0207646_11063048 3300025922 Bacteria 713
140 Ga0207681_10003912 3300025923 Bacteria 9240
141 Ga0207659_10012374 3300025926 Bacteria 5426
142 Ga0207659_10093268 3300025926 Bacteria 2253
143 Ga0207644_10021980 3300025931 Bacteria 4352
144 Ga0207706_10037489 3300025933 Unclassified 4304
145 Ga0207686_10402932 3300025934 Unclassified 1042
146 Ga0207670_10101391 3300025936 Bacteria 2057
147 Ga0207665_10063135 3300025939 Bacteria 2515
148 Ga0207665_10546053 3300025939 Unclassified 900
149 Ga0207665_10690944 3300025939 Unclassified 802
150 Ga0207691_10181480 3300025940 Bacteria 1839
151 Ga0207711_10025541 3300025941 Bacteria 4955
152 Ga0207711_10053988 3300025941 Bacteria 3446
153 Ga0207711_10082138 3300025941 Bacteria 2816
154 Ga0207689_10454353 3300025942 Bacteria 1071
155 Ga0207679_10002764 3300025945 Bacteria 10864
156 Ga0207667_10593228 3300025949 Bacteria 1118
157 Ga0207651_10005939 3300025960 Bacteria 6322
158 Ga0207651_10184473 3300025960 Bacteria 1658
159 Ga0207712_10007100 3300025961 Bacteria 7065
160 Ga0207658_10110696 3300025986 Bacteria 2170
161 Ga0207677_10013402 3300026023 Bacteria 4750
162 Ga0207703_10120303 3300026035 Bacteria 2253
163 Ga0207639_10405379 3300026041 Unclassified 1229
164 Ga0207708_10076354 3300026075 Bacteria 2570
165 Ga0207641_10031546 3300026088 Bacteria 4396
166 Ga0207641_10032748 3300026088 Bacteria 4317
167 Ga0207641_10156597 3300026088 Bacteria 2067
168 Ga0207641_10184271 3300026088 Bacteria 1914
169 Ga0207648_10352886 3300026089 Bacteria 1326
170 Ga0207676_10106335 3300026095 Bacteria 2338
171 Ga0207676_10296300 3300026095 Bacteria 1475
172 Ga0207675_100238210 3300026118 Unclassified 1758
173 Ga0207683_10158527 3300026121 Unclassified 2045
174 Ga0207428_10007255 3300027907 Bacteria 10134
175 Ga0207428_10064704 3300027907 Unclassified 2887
176 Ga0268266_10509131 3300028379 Bacteria 1150
177 Ga0268265_10750113 3300028380 Bacteria 947
178 Ga0268264_10031059 3300028381 Bacteria 4379
179 Ga0373941_0164954 3300035115 Bacteria 822
180 Ga0373931_0206823 3300035691 Unclassified 1175
181 Ga0373937_0148317 3300036401 Bacteria 2197
182 Ga0436364_0894905 3300037853 Bacteria 62238
183 Ga0436364_1312784 3300037853 Unclassified 2149
184 Ga0436360_0003563 3300039438 Bacteria 1627
185 Ga0436363_1319183 3300039450 Bacteria 1987
186 Ga0436363_1519619 3300039450 Bacteria 1150
187 Ga0439435_0002331 3300042436 Bacteria 3748
188 Ga0439444_0051412 3300042437 Bacteria 838
189 Ga0451576_0128619 3300045051 Bacteria 2640
190 Ga0451576_0581307 3300045051 Bacteria 1177
191 Ga0495640_0156468 3300046533 Unclassified 1463
192 Ga0495634_0081277 3300046642 Unclassified 2119
193 Ga0495674_0209273 3300047319 Bacteria 1616
194 Ga0496100_0628630 3300048903 Unclassified 835
195 Ga0496101_0230948 3300048904 Unclassified 1438
196 Ga0496101_0325955 3300048904 Unclassified 1205
197 Ga0496102_0080025 3300048905 Bacteria 3010
198 Ga0496103_0043821 3300048906 Bacteria 2756
199 Ga0496104_0183728 3300048907 Bacteria 2001
200 Ga0496104_0220741 3300048907 Unclassified 1808
201 Ga0496104_0338272 3300048907 Unclassified 1418
202 Ga0496108_0240697 3300048911 Bacteria 1574
203 Ga0496112_0353913 3300048915 Unclassified 1411
204 Ga0496112_1192046 3300048915 Bacteria 678
205 Ga0496115_0197528 3300048918 Bacteria 1662
206 Ga0496115_0301093 3300048918 Bacteria 1314
207 Ga0501042_0262254 3300049578 Bacteria 1247
208 nmdc:mga00v17_110299_c1 3300050491 Bacteria 1745
209 nmdc:mga05p37_10663_c1 3300050507 Bacteria 10904
210 nmdc:mga05p37_122045_c1 3300050507 Bacteria 3200
211 nmdc:mga05p37_15036_c1 3300050507 Bacteria 9290
212 nmdc:mga05p37_305253_c1 3300050507 Bacteria 1889
213 nmdc:mga05p37_318982_c1 3300050507 Bacteria 1840
214 nmdc:mga05p37_5625_c1 3300050507 Bacteria 14728
215 nmdc:mga05p37_56272_c1 3300050507 Bacteria 4842
216 nmdc:mga05p37_613209_c1 3300050507 Unclassified 1226
217 nmdc:mga05p37_65660_c1 3300050507 Bacteria 4464
218 nmdc:mga05p37_679074_c1 3300050507 Bacteria 1148
219 nmdc:mga05p37_76447_c1 3300050507 Bacteria 4122
220 nmdc:mga05p37_934658_c1 3300050507 Unclassified 930
221 nmdc:mga09592_128557_c1 3300050508 Bacteria 2179
222 nmdc:mga09592_20057_c1 3300050508 Bacteria 5493
223 nmdc:mga09592_47777_c1 3300050508 Bacteria 3607
224 nmdc:mga0qj67_35857_c1 3300050509 Bacteria 3879
225 nmdc:mga06r32_12839_c1 3300050510 Bacteria 7573
226 nmdc:mga06r32_201901_c1 3300050510 Bacteria 1976
227 nmdc:mga06r32_547227_c1 3300050510 Bacteria 1132
228 nmdc:mga06r32_579_c1 3300050510 Bacteria 31881
229 nmdc:mga06r32_61967_c1 3300050510 Bacteria 3602
230 nmdc:mga06r32_63805_c1 3300050510 Bacteria 3551
231 nmdc:mga08y16_146235_c1 3300050511 Bacteria 2457
232 nmdc:mga08y16_352_c1 3300050511 Bacteria 41512
233 nmdc:mga08y16_95735_c1 3300050511 Unclassified 3093
234 nmdc:mga0n895_150008_c1 3300050512 Bacteria 2361
235 nmdc:mga0n895_315030_c1 3300050512 Bacteria 1585
236 nmdc:mga0n895_380189_c1 3300050512 Unclassified 1429
237 nmdc:mga0rr50_200409_c1 3300050513 Bacteria 1640
238 nmdc:mga0rr50_591822_c1 3300050513 Bacteria 946
239 nmdc:mga0rr50_837675_c1 3300050513 Bacteria 785
240 nmdc:mga08x19_18441_c1 3300050514 Bacteria 4276
241 nmdc:mga08x19_33186_c1 3300050514 Bacteria 3257
242 nmdc:mga08x19_40152_c1 3300050514 Bacteria 2977
243 nmdc:mga0a205_1015297_c1 3300050515 Bacteria 677
244 nmdc:mga0a205_251403_c1 3300050515 Bacteria 1647
245 nmdc:mga0a205_29910_c1 3300050515 Bacteria 5212
246 Ga0501084_0503307 3300054114 Bacteria 1024

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050510 nmdc:mga06r32_63805_c1 nmdc:mga06r32_63805_c1_448_1116 190
2 3300006847 Ga0075431_100015179 Ga0075431_1000151794 193
3 3300009147 Ga0114129_10035364 Ga0114129_100353642 193
4 3300050507 nmdc:mga05p37_5625_c1 nmdc:mga05p37_5625_c1_2592_3221 193
5 3300050509 nmdc:mga0qj67_35857_c1 nmdc:mga0qj67_35857_c1_611_1240 193
6 3300050510 nmdc:mga06r32_12839_c1 nmdc:mga06r32_12839_c1_2659_3288 193
7 3300006846 Ga0075430_100005305 Ga0075430_1000053054 194
8 3300006852 Ga0075433_10566696 Ga0075433_105666962 196
9 3300006871 Ga0075434_100186342 Ga0075434_1001863422 196
10 3300054114 Ga0501084_0503307 Ga0501084_0503307_260_892 197
11 3300048905 Ga0496102_0080025 Ga0496102_0080025_1585_2217 199
12 3300048906 Ga0496103_0043821 Ga0496103_0043821_951_1583 199
13 3300048915 Ga0496112_1192046 Ga0496112_1192046_13_645 199
14 3300048911 Ga0496108_0240697 Ga0496108_0240697_558_1190 201
15 3300006844 Ga0075428_100327165 Ga0075428_1003271652 203
16 3300006846 Ga0075430_100059412 Ga0075430_1000594124 203
17 3300006847 Ga0075431_100022690 Ga0075431_1000226903 203
18 3300006880 Ga0075429_100368255 Ga0075429_1003682552 203
19 3300009147 Ga0114129_10257409 Ga0114129_102574093 203
20 3300050507 nmdc:mga05p37_318982_c1 nmdc:mga05p37_318982_c1_1162_1797 203
21 3300050510 nmdc:mga06r32_201901_c1 nmdc:mga06r32_201901_c1_348_983 203
22 3300005548 Ga0070665_100469160 Ga0070665_1004691602 204
23 3300005841 Ga0068863_100183100 Ga0068863_1001831002 204
24 3300009098 Ga0105245_10755489 Ga0105245_107554891 204
25 3300026088 Ga0207641_10156597 Ga0207641_101565973 204
26 3300035115 Ga0373941_0164954 Ga0373941_0164954_196_810 204
27 3300009098 Ga0105245_10339409 Ga0105245_103394092 205
28 3300005471 Ga0070698_100356200 Ga0070698_1003562002 206
29 iso_pu_bacteria 2884338543 2884340941 206
30 3300005546 Ga0070696_100984613 Ga0070696_1009846131 207
31 3300007076 Ga0075435_100696425 Ga0075435_1006964252 207
32 3300025922 Ga0207646_10292547 Ga0207646_102925471 207
33 3300050513 nmdc:mga0rr50_200409_c1 nmdc:mga0rr50_200409_c1_513_1136 207
34 3300050513 nmdc:mga0rr50_591822_c1 nmdc:mga0rr50_591822_c1_27_650 207
35 3300050514 nmdc:mga08x19_40152_c1 nmdc:mga08x19_40152_c1_530_1153 207
36 3300050515 nmdc:mga0a205_1015297_c1 nmdc:mga0a205_1015297_c1_10_633 207
37 3300005445 Ga0070708_100602849 Ga0070708_1006028491 208
38 3300005841 Ga0068863_100626007 Ga0068863_1006260072 208
39 3300025939 Ga0207665_10690944 Ga0207665_106909442 208
40 3300025949 Ga0207667_10593228 Ga0207667_105932281 208
41 3300006237 Ga0097621_100068051 Ga0097621_1000680512 209
42 3300006358 Ga0068871_100494282 Ga0068871_1004942822 209
43 3300006844 Ga0075428_100141608 Ga0075428_1001416083 209
44 3300006844 Ga0075428_100916889 Ga0075428_1009168892 209
45 3300009094 Ga0111539_10384478 Ga0111539_103844782 209
46 3300009147 Ga0114129_10741835 Ga0114129_107418352 209
47 3300009176 Ga0105242_10151741 Ga0105242_101517412 209
48 3300013306 Ga0163162_10001735 Ga0163162_100017359 209
49 3300021388 Ga0213875_10000600 Ga0213875_1000060024 209
50 3300025934 Ga0207686_10402932 Ga0207686_104029322 209
51 3300025939 Ga0207665_10063135 Ga0207665_100631353 209
52 3300037853 Ga0436364_0894905 Ga0436364_0894905_29932_30561 209
53 3300042437 Ga0439444_0051412 Ga0439444_0051412_106_735 209
54 3300050507 nmdc:mga05p37_15036_c1 nmdc:mga05p37_15036_c1_1898_2527 209
55 3300050507 nmdc:mga05p37_76447_c1 nmdc:mga05p37_76447_c1_2167_2796 209
56 3300050511 nmdc:mga08y16_146235_c1 nmdc:mga08y16_146235_c1_571_1200 209
57 3300050512 nmdc:mga0n895_315030_c1 nmdc:mga0n895_315030_c1_201_830 209
58 3300005434 Ga0070709_10174762 Ga0070709_101747621 210
59 3300005439 Ga0070711_100024313 Ga0070711_1000243132 210
60 3300005445 Ga0070708_100075491 Ga0070708_1000754913 210
61 3300005459 Ga0068867_100839779 Ga0068867_1008397791 210
62 3300005471 Ga0070698_100440823 Ga0070698_1004408231 210
63 3300005518 Ga0070699_100179846 Ga0070699_1001798461 210
64 3300005518 Ga0070699_100366413 Ga0070699_1003664131 210
65 3300005536 Ga0070697_100016782 Ga0070697_1000167822 210
66 3300005536 Ga0070697_100038954 Ga0070697_1000389542 210
67 3300005536 Ga0070697_100085828 Ga0070697_1000858282 210
68 3300005546 Ga0070696_100457310 Ga0070696_1004573101 210
69 3300005547 Ga0070693_100180307 Ga0070693_1001803072 210
70 3300005617 Ga0068859_100192242 Ga0068859_1001922423 210
71 3300005617 Ga0068859_101010168 Ga0068859_1010101682 210
72 3300005617 Ga0068859_101286679 Ga0068859_1012866791 210
73 3300005718 Ga0068866_10052521 Ga0068866_100525212 210
74 3300005841 Ga0068863_100019816 Ga0068863_1000198161 210
75 3300005841 Ga0068863_100063557 Ga0068863_1000635572 210
76 3300005841 Ga0068863_100769872 Ga0068863_1007698722 210
77 3300005843 Ga0068860_100006488 Ga0068860_1000064884 210
78 3300005985 Ga0081539_10000012 Ga0081539_10000012360 210
79 3300006058 Ga0075432_10013715 Ga0075432_100137152 210
80 3300006163 Ga0070715_10070672 Ga0070715_100706722 210
81 3300006173 Ga0070716_100158855 Ga0070716_1001588552 210
82 3300006175 Ga0070712_100048303 Ga0070712_1000483032 210
83 3300006844 Ga0075428_100005382 Ga0075428_1000053829 210
84 3300006844 Ga0075428_100317806 Ga0075428_1003178062 210
85 3300006847 Ga0075431_100001350 Ga0075431_10000135016 210
86 3300006847 Ga0075431_100011678 Ga0075431_1000116784 210
87 3300006852 Ga0075433_10221379 Ga0075433_102213792 210
88 3300006871 Ga0075434_100006845 Ga0075434_1000068457 210
89 3300006871 Ga0075434_100144767 Ga0075434_1001447672 210
90 3300006871 Ga0075434_100480455 Ga0075434_1004804552 210
91 3300006880 Ga0075429_100070938 Ga0075429_1000709382 210
92 3300006880 Ga0075429_100119044 Ga0075429_1001190442 210
93 3300006914 Ga0075436_100072228 Ga0075436_1000722283 210
94 3300006931 Ga0097620_100192242 Ga0097620_1001922423 210
95 3300006931 Ga0097620_101010131 Ga0097620_1010101312 210
96 3300006931 Ga0097620_101286537 Ga0097620_1012865371 210
97 3300007076 Ga0075435_100005701 Ga0075435_1000057013 210
98 3300007076 Ga0075435_100427882 Ga0075435_1004278822 210
99 3300007788 Ga0099795_10054894 Ga0099795_100548942 210
100 3300009094 Ga0111539_10006011 Ga0111539_100060113 210
101 3300009147 Ga0114129_10084895 Ga0114129_100848952 210
102 3300009147 Ga0114129_10132572 Ga0114129_101325723 210
103 3300009147 Ga0114129_10290712 Ga0114129_102907122 210
104 3300009147 Ga0114129_10309114 Ga0114129_103091143 210
105 3300009147 Ga0114129_11180106 Ga0114129_111801061 210
106 3300009177 Ga0105248_10012586 Ga0105248_100125868 210
107 3300009177 Ga0105248_10027983 Ga0105248_100279833 210
108 3300009553 Ga0105249_11189734 Ga0105249_111897342 210
109 3300013297 Ga0157378_10001131 Ga0157378_1000113117 210
110 3300013297 Ga0157378_10183287 Ga0157378_101832872 210
111 3300013306 Ga0163162_10019511 Ga0163162_100195114 210
112 3300014968 Ga0157379_10086886 Ga0157379_100868862 210
113 3300021388 Ga0213875_10002149 Ga0213875_100021497 210
114 3300025898 Ga0207692_10137392 Ga0207692_101373921 210
115 3300025899 Ga0207642_10016300 Ga0207642_100163003 210
116 3300025906 Ga0207699_10237547 Ga0207699_102375471 210
117 3300025906 Ga0207699_10391709 Ga0207699_103917091 210
118 3300025910 Ga0207684_10012843 Ga0207684_100128435 210
119 3300025910 Ga0207684_10539298 Ga0207684_105392981 210
120 3300025922 Ga0207646_10001333 Ga0207646_1000133321 210
121 3300025922 Ga0207646_10596263 Ga0207646_105962631 210
122 3300025922 Ga0207646_11063048 Ga0207646_110630481 210
123 3300025939 Ga0207665_10546053 Ga0207665_105460531 210
124 3300025941 Ga0207711_10053988 Ga0207711_100539882 210
125 3300025941 Ga0207711_10082138 Ga0207711_100821382 210
126 3300026041 Ga0207639_10405379 Ga0207639_104053792 210
127 3300026088 Ga0207641_10031546 Ga0207641_100315462 210
128 3300026088 Ga0207641_10184271 Ga0207641_101842712 210
129 3300026089 Ga0207648_10352886 Ga0207648_103528862 210
130 3300026095 Ga0207676_10296300 Ga0207676_102963002 210
131 3300027907 Ga0207428_10007255 Ga0207428_100072558 210
132 3300028379 Ga0268266_10509131 Ga0268266_105091312 210
133 3300028381 Ga0268264_10031059 Ga0268264_100310592 210
134 3300035691 Ga0373931_0206823 Ga0373931_0206823_112_762 210
135 3300036401 Ga0373937_0148317 Ga0373937_0148317_1254_1886 210
136 3300037853 Ga0436364_1312784 Ga0436364_1312784_379_1011 210
137 3300039438 Ga0436360_0003563 Ga0436360_0003563_75_707 210
138 3300039450 Ga0436363_1319183 Ga0436363_1319183_1214_1855 210
139 3300039450 Ga0436363_1519619 Ga0436363_1519619_485_1117 210
140 3300045051 Ga0451576_0581307 Ga0451576_0581307_202_834 210
141 3300047319 Ga0495674_0209273 Ga0495674_0209273_132_764 210
142 3300048903 Ga0496100_0628630 Ga0496100_0628630_92_724 210
143 3300048904 Ga0496101_0230948 Ga0496101_0230948_413_1063 210
144 3300048904 Ga0496101_0325955 Ga0496101_0325955_293_925 210
145 3300048907 Ga0496104_0183728 Ga0496104_0183728_753_1385 210
146 3300048907 Ga0496104_0220741 Ga0496104_0220741_347_979 210
147 3300048907 Ga0496104_0338272 Ga0496104_0338272_655_1305 210
148 3300048915 Ga0496112_0353913 Ga0496112_0353913_58_708 210
149 3300048918 Ga0496115_0301093 Ga0496115_0301093_19_651 210
150 3300049578 Ga0501042_0262254 Ga0501042_0262254_19_651 210
151 3300050491 nmdc:mga00v17_110299_c1 nmdc:mga00v17_110299_c1_546_1178 210
152 3300050507 nmdc:mga05p37_10663_c1 nmdc:mga05p37_10663_c1_3423_4055 210
153 3300050507 nmdc:mga05p37_122045_c1 nmdc:mga05p37_122045_c1_1795_2427 210
154 3300050507 nmdc:mga05p37_305253_c1 nmdc:mga05p37_305253_c1_869_1501 210
155 3300050507 nmdc:mga05p37_613209_c1 nmdc:mga05p37_613209_c1_283_915 210
156 3300050507 nmdc:mga05p37_65660_c1 nmdc:mga05p37_65660_c1_482_1114 210
157 3300050507 nmdc:mga05p37_934658_c1 nmdc:mga05p37_934658_c1_112_744 210
158 3300050508 nmdc:mga09592_128557_c1 nmdc:mga09592_128557_c1_350_982 210
159 3300050510 nmdc:mga06r32_579_c1 nmdc:mga06r32_579_c1_6455_7087 210
160 3300050510 nmdc:mga06r32_61967_c1 nmdc:mga06r32_61967_c1_2500_3132 210
161 3300050511 nmdc:mga08y16_352_c1 nmdc:mga08y16_352_c1_8310_8942 210
162 3300050512 nmdc:mga0n895_150008_c1 nmdc:mga0n895_150008_c1_1665_2297 210
163 3300050512 nmdc:mga0n895_380189_c1 nmdc:mga0n895_380189_c1_628_1278 210
164 3300050513 nmdc:mga0rr50_837675_c1 nmdc:mga0rr50_837675_c1_29_697 210
165 3300050514 nmdc:mga08x19_18441_c1 nmdc:mga08x19_18441_c1_547_1215 210
166 3300050514 nmdc:mga08x19_33186_c1 nmdc:mga08x19_33186_c1_819_1469 210
167 3300050515 nmdc:mga0a205_29910_c1 nmdc:mga0a205_29910_c1_2076_2708 210
168 3300005293 Ga0065715_10117712 Ga0065715_101177122 211
169 3300009147 Ga0114129_10659535 Ga0114129_106595351 211
170 3300048918 Ga0496115_0197528 Ga0496115_0197528_61_711 211
171 3300050507 nmdc:mga05p37_679074_c1 nmdc:mga05p37_679074_c1_216_953 211
172 3300005293 Ga0065715_10106813 Ga0065715_101068132 213
173 3300005295 Ga0065707_10393882 Ga0065707_103938822 213
174 3300005328 Ga0070676_10049900 Ga0070676_100499002 213
175 3300005333 Ga0070677_10050844 Ga0070677_100508442 213
176 3300005334 Ga0068869_100011890 Ga0068869_1000118902 213
177 3300005338 Ga0068868_100037257 Ga0068868_1000372575 213
178 3300005340 Ga0070689_100039814 Ga0070689_1000398144 213
179 3300005344 Ga0070661_100011573 Ga0070661_1000115732 213
180 3300005353 Ga0070669_100431176 Ga0070669_1004311762 213
181 3300005355 Ga0070671_100157643 Ga0070671_1001576433 213
182 3300005364 Ga0070673_100094366 Ga0070673_1000943662 213
183 3300005365 Ga0070688_100057372 Ga0070688_1000573722 213
184 3300005367 Ga0070667_100260519 Ga0070667_1002605192 213
185 3300005456 Ga0070678_100681520 Ga0070678_1006815202 213
186 3300005457 Ga0070662_100075548 Ga0070662_1000755481 213
187 3300005466 Ga0070685_10024066 Ga0070685_100240662 213
188 3300005543 Ga0070672_100139803 Ga0070672_1001398031 213
189 3300005544 Ga0070686_100018447 Ga0070686_1000184472 213
190 3300005617 Ga0068859_100047075 Ga0068859_1000470753 213
191 3300005618 Ga0068864_100045092 Ga0068864_1000450922 213
192 3300005719 Ga0068861_100053367 Ga0068861_1000533672 213
193 3300005840 Ga0068870_10001707 Ga0068870_100017078 213
194 3300005841 Ga0068863_100002837 Ga0068863_1000028373 213
195 3300005841 Ga0068863_100072808 Ga0068863_1000728083 213
196 3300005843 Ga0068860_100397810 Ga0068860_1003978101 213
197 3300006358 Ga0068871_100230870 Ga0068871_1002308702 213
198 3300006852 Ga0075433_10183974 Ga0075433_101839742 213
199 3300006880 Ga0075429_100117029 Ga0075429_1001170292 213
200 3300006931 Ga0097620_100047075 Ga0097620_1000470753 213
201 3300009094 Ga0111539_10145591 Ga0111539_101455912 213
202 3300009553 Ga0105249_10176772 Ga0105249_101767722 213
203 3300013102 Ga0157371_10328050 Ga0157371_103280501 213
204 3300013296 Ga0157374_10163180 Ga0157374_101631802 213
205 3300013306 Ga0163162_11141663 Ga0163162_111416632 213
206 3300014326 Ga0157380_10017576 Ga0157380_100175763 213
207 3300014968 Ga0157379_10167935 Ga0157379_101679353 213
208 3300025315 Ga0207697_10013535 Ga0207697_100135352 213
209 3300025893 Ga0207682_10008266 Ga0207682_100082662 213
210 3300025901 Ga0207688_10008883 Ga0207688_100088837 213
211 3300025903 Ga0207680_10041096 Ga0207680_100410961 213
212 3300025907 Ga0207645_10059204 Ga0207645_100592043 213
213 3300025908 Ga0207643_10020193 Ga0207643_100201932 213
214 3300025920 Ga0207649_10012213 Ga0207649_100122132 213
215 3300025923 Ga0207681_10003912 Ga0207681_100039122 213
216 3300025926 Ga0207659_10012374 Ga0207659_100123742 213
217 3300025926 Ga0207659_10093268 Ga0207659_100932682 213
218 3300025931 Ga0207644_10021980 Ga0207644_100219803 213
219 3300025933 Ga0207706_10037489 Ga0207706_100374893 213
220 3300025936 Ga0207670_10101391 Ga0207670_101013912 213
221 3300025940 Ga0207691_10181480 Ga0207691_101814802 213
222 3300025941 Ga0207711_10025541 Ga0207711_100255414 213
223 3300025942 Ga0207689_10454353 Ga0207689_104543532 213
224 3300025945 Ga0207679_10002764 Ga0207679_100027644 213
225 3300025960 Ga0207651_10005939 Ga0207651_100059393 213
226 3300025960 Ga0207651_10184473 Ga0207651_101844732 213
227 3300025961 Ga0207712_10007100 Ga0207712_100071006 213
228 3300025986 Ga0207658_10110696 Ga0207658_101106962 213
229 3300026023 Ga0207677_10013402 Ga0207677_100134022 213
230 3300026035 Ga0207703_10120303 Ga0207703_101203032 213
231 3300026075 Ga0207708_10076354 Ga0207708_100763543 213
232 3300026088 Ga0207641_10032748 Ga0207641_100327483 213
233 3300026095 Ga0207676_10106335 Ga0207676_101063352 213
234 3300026118 Ga0207675_100238210 Ga0207675_1002382102 213
235 3300026121 Ga0207683_10158527 Ga0207683_101585272 213
236 3300027907 Ga0207428_10007255 Ga0207428_100072556 213
237 3300027907 Ga0207428_10064704 Ga0207428_100647043 213
238 3300028380 Ga0268265_10750113 Ga0268265_107501131 213
239 3300042436 Ga0439435_0002331 Ga0439435_0002331_598_1239 213
240 3300045051 Ga0451576_0128619 Ga0451576_0128619_373_1014 213
241 3300046533 Ga0495640_0156468 Ga0495640_0156468_735_1418 213
242 3300046642 Ga0495634_0081277 Ga0495634_0081277_1120_1803 213
243 3300050507 nmdc:mga05p37_56272_c1 nmdc:mga05p37_56272_c1_283_924 213
244 3300050508 nmdc:mga09592_20057_c1 nmdc:mga09592_20057_c1_949_1590 213
245 3300050508 nmdc:mga09592_47777_c1 nmdc:mga09592_47777_c1_2171_2812 213
246 3300050510 nmdc:mga06r32_547227_c1 nmdc:mga06r32_547227_c1_405_1046 213
247 3300050511 nmdc:mga08y16_352_c1 nmdc:mga08y16_352_c1_4426_5067 213
248 3300050511 nmdc:mga08y16_95735_c1 nmdc:mga08y16_95735_c1_1558_2199 213
249 3300050515 nmdc:mga0a205_251403_c1 nmdc:mga0a205_251403_c1_262_903 213

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

44

156

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

180

235

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1fse-assembly2.cif.gz_C crystal structure of the bacillus subtilis regulatory protein gere 0.9814 148 210
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9789 148 208
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9766 148 208
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9715 147 201
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.969 7 124
ID Description Score Start End Superfamily
4hyeA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9961 148 208 1.10.10.10
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9882 148 202 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9837 148 202 1.10.10.10
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.983 146 208 1.10.10.10
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9828 148 200 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0F9FFZ2-F1-model_v4 Response regulatory domain-containing protein 0.9833 6 137 GO:0000160
GO:0003677
AF-A0A4V1TC14-F1-model_v4 deleted 0.9814 6 133
AF-A0A7C6XZJ0-F1-model_v4 Response regulator transcription factor 0.9783 6 141 GO:0000160
GO:0003677
AF-A0A6V8NDC5-F1-model_v4 Response regulatory domain-containing protein 0.9768 6 139 GO:0000160
GO:0003677
AF-A0A661KZ54-F1-model_v4 DNA-binding response regulator 0.9715 7 136 GO:0000160
GO:0003677

Feature Viewer

pLDDT pTM Quality
86.61 0.65 Medium
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Predicted Structure (AlphaFold2)

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