F360408

General Info

Members Datasets Scaffolds Average Seq Length
249 165 241 479

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10079138|rootH2_100791387
Length 573
Sequence MRRMIFPRVDPGSCHARTAGIHYPYAPAFIFPAYRQVLVIVDHNALSVYIKIGKAGKDRESKNKCCFLWCLYQNVQLKYQIVHHNSYSFIPAYHSKSYRMNTLKVGLFGIGLAAYWEQFEGLQQRLSGYIDVVHQQLQGYGAEIVSLGLIDTPEKAFEAGSRFRQEEVDLIFLYVTTYALSSTVLPVVKRAKVPVIVLNLSPAAAIDYTAFNNLGNRTAMTGEWLAFCAACPVPEIASVFKRSGIPFYQVTGMLHDDPGVWKEVEEWIAAAKVAHTMYHNRLGLMGNYYGGMLDIYSNLTLHAAVLGGHMEIIEVDELSGIRATVSETEMAAKLQEAGRVFEIQPDCSPEELHRAARTAVALDKLVAKHQLGSLAYYHKGSGNAVNEDTMSSVIMGTSLLTAQGVPVAGEYEVKNAQAMKIMDSFGAGGSFTEYYAMDYQDDIVLMGHDGPCHPVIAAGKIKLKPLQVYHGKVGKGLSVEMSVAHGPVTLLSVVETGNGTLQFLLAEGMSEAGPILEIGNTNSRYRFSIGARNFVEAWNAQGPAHHCAVGKGHIAPRIKKLAELLGIEAIQVC

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
3 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
4 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
5 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
6 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
7 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
8 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
9 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
10 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
11 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
12 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
13 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
16 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
17 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
22 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
23 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
24 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
25 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
28 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
29 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
30 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
33 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
36 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
37 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
43 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
44 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
45 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
46 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
47 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
48 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
49 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
50 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
52 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
53 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
56 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
57 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
62 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
63 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
64 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
65 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
66 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
67 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
68 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
69 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
70 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
71 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
72 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
73 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
74 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
75 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
76 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
77 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
78 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
79 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
80 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
81 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
82 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
83 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
84 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
123 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
124 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
125 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
126 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
127 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
128 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
129 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
130 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
131 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
132 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
133 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
134 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
135 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
136 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
137 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
138 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
139 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
140 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
141 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
142 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
143 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
144 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
145 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
146 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
147 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
148 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
149 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
150 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
151 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
152 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
153 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
154 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
155 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
156 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
157 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
161 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
162 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
163 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
164 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
165 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.79
Metatranscriptomes 0
Isolates 3.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.21
Nodule 0
Rhizoplane 1.2
Rhizosphere 88.76
Stem 0
Stem Tuber 0
Unclassified 6.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2056031 2162886007 Bacteria 41625
2 JGI24740J21852_10009228 3300001979 Bacteria 3874
3 JGI25162J39368_1000012 3300002737 Bacteria 373191
4 JGI25154J39366_1000008 3300002738 Bacteria 315375
5 JGI25157J39369_1003178 3300002741 Unclassified 3488
6 rootH2_10018501 3300003320 Bacteria 14992
7 rootH2_10079138 3300003320 Bacteria 20872
8 Ga0065714_10003347 3300005288 Bacteria 22247
9 Ga0065704_10000208 3300005289 Bacteria 101850
10 Ga0070658_10159181 3300005327 Bacteria 1894
11 Ga0070676_10013189 3300005328 Bacteria 4528
12 Ga0070676_10040709 3300005328 Unclassified 2692
13 Ga0070683_100021249 3300005329 Bacteria 5789
14 Ga0070666_10016680 3300005335 Bacteria 4700
15 Ga0070680_100036799 3300005336 Bacteria 3954
16 Ga0068868_100097050 3300005338 Bacteria 2381
17 Ga0070660_100040511 3300005339 Unclassified 3545
18 Ga0070691_10001269 3300005341 Bacteria 10659
19 Ga0070661_100051175 3300005344 Unclassified 3023
20 Ga0070668_100009001 3300005347 Bacteria 7414
21 Ga0070659_100016622 3300005366 Bacteria 5527
22 Ga0070709_10000323 3300005434 Bacteria 30234
23 Ga0070709_10018116 3300005434 Bacteria 4050
24 Ga0070709_10059295 3300005434 Bacteria 2430
25 Ga0070713_100000034 3300005436 Bacteria 86671
26 Ga0070713_100002075 3300005436 Bacteria 12953
27 Ga0070713_100105232 3300005436 Bacteria 2451
28 Ga0070711_100000387 3300005439 Bacteria 22724
29 Ga0070663_100066650 3300005455 Unclassified 2609
30 Ga0070662_100023293 3300005457 Bacteria 4252
31 Ga0070681_10025134 3300005458 Bacteria 5993
32 Ga0070706_100000447 3300005467 Bacteria 49339
33 Ga0070679_100055227 3300005530 Unclassified 3955
34 Ga0070679_100075020 3300005530 Bacteria 3372
35 Ga0070697_100000435 3300005536 Bacteria 31985
36 Ga0068853_100212278 3300005539 Unclassified 1765
37 Ga0070693_100015449 3300005547 Bacteria 3931
38 Ga0068855_100000026 3300005563 Bacteria 175140
39 Ga0068855_100047478 3300005563 Bacteria 5073
40 Ga0068855_100054315 3300005563 Bacteria 4708
41 Ga0068855_100054945 3300005563 Bacteria 4678
42 Ga0068855_100100496 3300005563 Bacteria 3330
43 Ga0068857_100005877 3300005577 Bacteria 10474
44 Ga0068857_100007531 3300005577 Bacteria 9368
45 Ga0068857_100105380 3300005577 Bacteria 2532
46 Ga0068854_100004414 3300005578 Bacteria 8879
47 Ga0068856_100013501 3300005614 Bacteria 7907
48 Ga0068856_100024000 3300005614 Bacteria 5932
49 Ga0068856_100037135 3300005614 Bacteria 4779
50 Ga0068856_100083568 3300005614 Bacteria 3171
51 Ga0068852_100030596 3300005616 Bacteria 4434
52 Ga0068852_100043785 3300005616 Bacteria 3798
53 Ga0068860_100000019 3300005843 Bacteria 299860
54 Ga0068860_100023442 3300005843 Bacteria 5964
55 Ga0068862_100115335 3300005844 Bacteria 2362
56 Ga0081539_10001987 3300005985 Bacteria 31082
57 Ga0070717_10027713 3300006028 Bacteria 4529
58 Ga0070716_100086625 3300006173 Bacteria 1884
59 Ga0070712_100000020 3300006175 Bacteria 84120
60 Ga0070712_100001428 3300006175 Bacteria 14562
61 Ga0075366_10025788 3300006195 Unclassified 3438
62 Ga0097621_100062630 3300006237 Bacteria 3054
63 Ga0097621_100100023 3300006237 Bacteria 2438
64 Ga0068871_100015327 3300006358 Bacteria 5733
65 Ga0068871_100164694 3300006358 Bacteria 1897
66 Ga0068865_100000015 3300006881 Bacteria 129922
67 Ga0105250_10016150 3300009092 Bacteria 3047
68 Ga0105240_10014867 3300009093 Bacteria 10608
69 Ga0105240_10029180 3300009093 Bacteria 7193
70 Ga0105240_10069212 3300009093 Bacteria 4370
71 Ga0105240_10074831 3300009093 Bacteria 4179
72 Ga0105240_10220000 3300009093 Bacteria 2213
73 Ga0105245_10052718 3300009098 Bacteria 3649
74 Ga0105243_10154122 3300009148 Bacteria 1974
75 Ga0105241_10000230 3300009174 Bacteria 42250
76 Ga0105241_10020207 3300009174 Bacteria 4919
77 Ga0105241_10068008 3300009174 Bacteria 2758
78 Ga0105248_10039213 3300009177 Bacteria 5305
79 Ga0105237_10009566 3300009545 Bacteria 10377
80 Ga0105237_10009619 3300009545 Bacteria 10348
81 Ga0105237_10009851 3300009545 Bacteria 10215
82 Ga0105237_10104816 3300009545 Bacteria 2819
83 Ga0105237_10229562 3300009545 Unclassified 1857
84 Ga0105238_10011091 3300009551 Bacteria 9057
85 Ga0105238_10121797 3300009551 Bacteria 2588
86 Ga0105249_10006320 3300009553 Bacteria 10296
87 Ga0105239_10000004 3300010375 Bacteria 532483
88 Ga0105239_10000005 3300010375 Bacteria 496066
89 Ga0105239_10000173 3300010375 Bacteria 93289
90 Ga0105239_10056753 3300010375 Unclassified 4295
91 Ga0105239_10065327 3300010375 Bacteria 3996
92 Ga0105239_10124308 3300010375 Bacteria 2866
93 Ga0105239_10124635 3300010375 Unclassified 2863
94 Ga0105246_10009132 3300011119 Bacteria 6104
95 Ga0157373_10000064 3300013100 Bacteria 94176
96 Ga0157373_10000944 3300013100 Bacteria 22511
97 Ga0157373_10068973 3300013100 Bacteria 2500
98 Ga0157371_10004718 3300013102 Bacteria 11776
99 Ga0157371_10006874 3300013102 Bacteria 9289
100 Ga0157370_10036464 3300013104 Bacteria 4771
101 Ga0157370_10038412 3300013104 Bacteria 4630
102 Ga0157370_10086504 3300013104 Bacteria 2945
103 Ga0157370_10216019 3300013104 Bacteria 1777
104 Ga0157369_10026815 3300013105 Bacteria 6389
105 Ga0157369_10099968 3300013105 Bacteria 3092
106 Ga0157374_10001077 3300013296 Bacteria 23645
107 Ga0157374_10005238 3300013296 Bacteria 10876
108 Ga0157374_10013707 3300013296 Bacteria 7082
109 Ga0157374_10123631 3300013296 Bacteria 2499
110 Ga0157378_10003231 3300013297 Bacteria 14503
111 Ga0163162_10006145 3300013306 Bacteria 11622
112 Ga0163162_10019423 3300013306 Bacteria 6665
113 Ga0163162_10092258 3300013306 Bacteria 3112
114 Ga0157372_10000376 3300013307 Bacteria 49449
115 Ga0157372_10015376 3300013307 Bacteria 8201
116 Ga0157372_10041659 3300013307 Bacteria 5077
117 Ga0182008_10015431 3300014497 Bacteria 3985
118 Ga0157376_10093855 3300014969 Bacteria 2606
119 Ga0182006_1013089 3300015261 Bacteria 3611
120 Ga0182007_10008033 3300015262 Bacteria 4363
121 Ga0163161_10084052 3300017792 Bacteria 2347
122 Ga0213872_10010777 3300021361 Bacteria 4340
123 Ga0213872_10069759 3300021361 Bacteria 1585
124 Ga0224572_1003166 3300024225 Bacteria 2753
125 Ga0209437_100041 3300025233 Bacteria 444465
126 Ga0209646_1000045 3300025246 Bacteria 333765
127 Ga0209026_1000075 3300025250 Bacteria 202874
128 Ga0209233_1000978 3300025261 Bacteria 12282
129 Ga0207426_1000159 3300025302 Bacteria 175899
130 Ga0207656_10015806 3300025321 Bacteria 2927
131 Ga0207680_10060266 3300025903 Bacteria 2309
132 Ga0207647_10010756 3300025904 Bacteria 6444
133 Ga0207699_10006929 3300025906 Bacteria 5517
134 Ga0207645_10082892 3300025907 Unclassified 2056
135 Ga0207705_10000020 3300025909 Bacteria 311745
136 Ga0207705_10007952 3300025909 Bacteria 7779
137 Ga0207684_10003258 3300025910 Bacteria 15926
138 Ga0207654_10000040 3300025911 Bacteria 105600
139 Ga0207654_10006656 3300025911 Bacteria 5816
140 Ga0207707_10087074 3300025912 Bacteria 2729
141 Ga0207695_10000524 3300025913 Bacteria 81259
142 Ga0207695_10012394 3300025913 Bacteria 10238
143 Ga0207671_10000136 3300025914 Bacteria 112191
144 Ga0207671_10001987 3300025914 Bacteria 22556
145 Ga0207671_10006591 3300025914 Bacteria 10306
146 Ga0207671_10030017 3300025914 Bacteria 4056
147 Ga0207671_10082869 3300025914 Bacteria 2407
148 Ga0207693_10000243 3300025915 Bacteria 50405
149 Ga0207693_10001511 3300025915 Bacteria 20542
150 Ga0207663_10000901 3300025916 Bacteria 13557
151 Ga0207660_10000739 3300025917 Bacteria 21668
152 Ga0207660_10053422 3300025917 Bacteria 2879
153 Ga0207657_10005852 3300025919 Bacteria 12807
154 Ga0207657_10006763 3300025919 Bacteria 11843
155 Ga0207652_10004747 3300025921 Bacteria 11015
156 Ga0207652_10195801 3300025921 Bacteria 1818
157 Ga0207694_10086485 3300025924 Bacteria 2469
158 Ga0207687_10003667 3300025927 Bacteria 10345
159 Ga0207700_10000304 3300025928 Bacteria 29208
160 Ga0207664_10098870 3300025929 Bacteria 2407
161 Ga0207706_10005804 3300025933 Bacteria 11482
162 Ga0207709_10017822 3300025935 Bacteria 3969
163 Ga0207704_10000010 3300025938 Bacteria 188125
164 Ga0207711_10005378 3300025941 Bacteria 10836
165 Ga0207667_10000022 3300025949 Bacteria 369570
166 Ga0207667_10005440 3300025949 Bacteria 15522
167 Ga0207667_10038769 3300025949 Bacteria 5083
168 Ga0207667_10091754 3300025949 Unclassified 3137
169 Ga0207667_10135563 3300025949 Unclassified 2535
170 Ga0207712_10026471 3300025961 Bacteria 3865
171 Ga0207640_10003956 3300025981 Bacteria 7999
172 Ga0207658_10017185 3300025986 Bacteria 4984
173 Ga0207677_10004561 3300026023 Bacteria 7450
174 Ga0207677_10084868 3300026023 Unclassified 2284
175 Ga0207703_10093324 3300026035 Bacteria 2535
176 Ga0207639_10042532 3300026041 Bacteria 3405
177 Ga0207639_10091434 3300026041 Unclassified 2436
178 Ga0207678_10016084 3300026067 Bacteria 6569
179 Ga0207678_10044520 3300026067 Bacteria 3839
180 Ga0207702_10001126 3300026078 Bacteria 27293
181 Ga0207702_10027479 3300026078 Bacteria 4725
182 Ga0207648_10015339 3300026089 Bacteria 7050
183 Ga0207676_10024255 3300026095 Bacteria 4487
184 Ga0207674_10004479 3300026116 Bacteria 16801
185 Ga0207674_10024694 3300026116 Bacteria 6417
186 Ga0207674_10092251 3300026116 Bacteria 3018
187 Ga0207674_10154773 3300026116 Bacteria 2248
188 Ga0207698_10029086 3300026142 Bacteria 3952
189 Ga0268264_10000254 3300028381 Bacteria 98371
190 Ga0268264_10050496 3300028381 Bacteria 3463
191 Ga0307515_10000983 3300028794 Bacteria 65204
192 Ga0265338_10147511 3300028800 Bacteria 1833
193 Ga0307509_10037777 3300031507 Bacteria 5276
194 Ga0307412_10000009 3300031911 Bacteria 445987
195 Ga0307510_10116318 3300033180 Bacteria 2396
196 Ga0373935_0117746 3300035692 Unclassified 1771
197 Ga0395899_0008310 3300037312 Bacteria 7990
198 Ga0395900_0007515 3300037418 Bacteria 11260
199 Ga0395900_0036704 3300037418 Bacteria 5052
200 Ga0395898_0014020 3300037466 Bacteria 8236
201 Ga0436364_0906509 3300037853 Bacteria 3092
202 Ga0436364_1417996 3300037853 Bacteria 2587
203 Ga0395901_0013040 3300038443 Bacteria 8435
204 Ga0395901_0264858 3300038443 Bacteria 1788
205 Ga0436365_0117580 3300039437 Bacteria 8618
206 Ga0436360_0057515 3300039438 Bacteria 2375
207 Ga0436361_0108597 3300039447 Bacteria 2607
208 Ga0436361_0868006 3300039447 Bacteria 6366
209 Ga0453684_0001347 3300044712 Bacteria 71915
210 Ga0453684_0220250 3300044712 Bacteria 2199
211 Ga0451576_0259608 3300045051 Bacteria 1816
212 Ga0495580_0011304 3300046472 Bacteria 6909
213 Ga0495606_0000264 3300046507 Bacteria 92733
214 Ga0495610_0001928 3300046512 Bacteria 17885
215 Ga0495616_0035156 3300046513 Bacteria 2595
216 Ga0495648_0003034 3300046524 Bacteria 15033
217 Ga0495648_0031265 3300046524 Bacteria 3508
218 Ga0495648_0060295 3300046524 Bacteria 2258
219 Ga0495652_0001226 3300046529 Bacteria 28763
220 Ga0495652_0092487 3300046529 Bacteria 2471
221 Ga0495586_0002319 3300046535 Bacteria 10347
222 Ga0495633_0000804 3300046558 Bacteria 27892
223 Ga0495668_0050349 3300046616 Bacteria 2309
224 Ga0495625_0000211 3300046660 Bacteria 92222
225 Ga0495661_0003542 3300046665 Bacteria 11508
226 Ga0495649_0000090 3300046694 Bacteria 78509
227 Ga0495676_0056245 3300047321 Bacteria 3112
228 Ga0495687_000119 3300047443 Bacteria 121587
229 Ga0495686_0000098 3300047472 Bacteria 183131
230 Ga0496106_0065986 3300048909 Bacteria 2756
231 Ga0496108_0194152 3300048911 Bacteria 1760
232 Ga0496112_0110492 3300048915 Bacteria 2719
233 Ga0496125_0000029 3300048928 Bacteria 382675
234 Ga0501032_0094899 3300049569 Bacteria 1978
235 Ga0501034_0005861 3300049571 Bacteria 13363
236 Ga0501046_0000250 3300049580 Bacteria 55051
237 Ga0501047_0009355 3300049581 Bacteria 9254
238 nmdc:mga0k408_22246_c1 3300050493 Unclassified 3569
239 Ga0495619_0092594 3300053085 Bacteria 2048
240 Ga0500583_0012407 3300053092 Unclassified 3250
241 Ga0500622_0007866 3300053156 Bacteria 6005

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003320 rootH2_10018501 rootH2_100185018 456
2 3300014497 Ga0182008_10015431 Ga0182008_100154313 465
3 3300015262 Ga0182007_10008033 Ga0182007_100080332 465
4 3300013296 Ga0157374_10013707 Ga0157374_100137072 469
5 iso_pu_bacteria 2929177148 2929179785 470
6 iso_pu_bacteria 2945977869 2945982207 470
7 iso_pu_bacteria 2946013367 2946018402 470
8 3300037853 Ga0436364_1417996 Ga0436364_1417996_34_1449 471
9 3300046529 Ga0495652_0001226 Ga0495652_0001226_2973_4448 471
10 3300048928 Ga0496125_0000029 Ga0496125_0000029_159249_160691 472
11 iso_pu_bacteria 2919437846 2919441509 472
12 iso_pu_bacteria 2929921140 2929924014 472
13 iso_pu_bacteria 3003233435 3003233710 473
14 iso_pu_bacteria 8003151029 8003157835 473
15 3300005434 Ga0070709_10018116 Ga0070709_100181163 474
16 3300005563 Ga0068855_100000026 Ga0068855_10000002695 474
17 3300005577 Ga0068857_100105380 Ga0068857_1001053802 474
18 3300006237 Ga0097621_100100023 Ga0097621_1001000231 474
19 3300013306 Ga0163162_10092258 Ga0163162_100922583 474
20 3300021361 Ga0213872_10010777 Ga0213872_100107772 474
21 3300025949 Ga0207667_10000022 Ga0207667_1000002280 474
22 3300026116 Ga0207674_10154773 Ga0207674_101547732 474
23 3300046535 Ga0495586_0002319 Ga0495586_0002319_234_1658 474
24 3300047321 Ga0495676_0056245 Ga0495676_0056245_91_1515 474
25 3300049569 Ga0501032_0094899 Ga0501032_0094899_468_1904 474
26 3300049571 Ga0501034_0005861 Ga0501034_0005861_2685_4121 474
27 3300049581 Ga0501047_0009355 Ga0501047_0009355_7317_8753 474
28 iso_pu_bacteria 2522125168 2522551549 474
29 3300005328 Ga0070676_10013189 Ga0070676_100131891 475
30 3300005328 Ga0070676_10040709 Ga0070676_100407092 475
31 3300005335 Ga0070666_10016680 Ga0070666_100166801 475
32 3300005336 Ga0070680_100036799 Ga0070680_1000367992 475
33 3300005338 Ga0068868_100097050 Ga0068868_1000970501 475
34 3300005347 Ga0070668_100009001 Ga0070668_1000090016 475
35 3300005366 Ga0070659_100016622 Ga0070659_1000166222 475
36 3300005434 Ga0070709_10000323 Ga0070709_100003234 475
37 3300005434 Ga0070709_10059295 Ga0070709_100592951 475
38 3300005436 Ga0070713_100000034 Ga0070713_10000003463 475
39 3300005436 Ga0070713_100002075 Ga0070713_1000020755 475
40 3300005436 Ga0070713_100105232 Ga0070713_1001052321 475
41 3300005439 Ga0070711_100000387 Ga0070711_1000003876 475
42 3300005457 Ga0070662_100023293 Ga0070662_1000232934 475
43 3300005458 Ga0070681_10025134 Ga0070681_100251342 475
44 3300005467 Ga0070706_100000447 Ga0070706_10000044723 475
45 3300005530 Ga0070679_100075020 Ga0070679_1000750202 475
46 3300005536 Ga0070697_100000435 Ga0070697_10000043511 475
47 3300005539 Ga0068853_100212278 Ga0068853_1002122781 475
48 3300005547 Ga0070693_100015449 Ga0070693_1000154492 475
49 3300005563 Ga0068855_100047478 Ga0068855_1000474784 475
50 3300005577 Ga0068857_100007531 Ga0068857_1000075311 475
51 3300005578 Ga0068854_100004414 Ga0068854_1000044145 475
52 3300005614 Ga0068856_100024000 Ga0068856_1000240005 475
53 3300005614 Ga0068856_100037135 Ga0068856_1000371353 475
54 3300005614 Ga0068856_100083568 Ga0068856_1000835682 475
55 3300005616 Ga0068852_100030596 Ga0068852_1000305964 475
56 3300005616 Ga0068852_100043785 Ga0068852_1000437854 475
57 3300005843 Ga0068860_100023442 Ga0068860_1000234424 475
58 3300005844 Ga0068862_100115335 Ga0068862_1001153352 475
59 3300005985 Ga0081539_10001987 Ga0081539_1000198728 475
60 3300006028 Ga0070717_10027713 Ga0070717_100277132 475
61 3300006173 Ga0070716_100086625 Ga0070716_1000866251 475
62 3300006175 Ga0070712_100000020 Ga0070712_10000002013 475
63 3300006175 Ga0070712_100001428 Ga0070712_1000014286 475
64 3300006195 Ga0075366_10025788 Ga0075366_100257882 475
65 3300006237 Ga0097621_100062630 Ga0097621_1000626302 475
66 3300006358 Ga0068871_100015327 Ga0068871_1000153274 475
67 3300006358 Ga0068871_100164694 Ga0068871_1001646942 475
68 3300006881 Ga0068865_100000015 Ga0068865_10000001512 475
69 3300009092 Ga0105250_10016150 Ga0105250_100161502 475
70 3300009093 Ga0105240_10014867 Ga0105240_100148674 475
71 3300009093 Ga0105240_10029180 Ga0105240_100291807 475
72 3300009093 Ga0105240_10074831 Ga0105240_100748312 475
73 3300009093 Ga0105240_10220000 Ga0105240_102200002 475
74 3300009098 Ga0105245_10052718 Ga0105245_100527182 475
75 3300009148 Ga0105243_10154122 Ga0105243_101541222 475
76 3300009174 Ga0105241_10000230 Ga0105241_1000023023 475
77 3300009174 Ga0105241_10020207 Ga0105241_100202074 475
78 3300009174 Ga0105241_10068008 Ga0105241_100680082 475
79 3300009177 Ga0105248_10039213 Ga0105248_100392134 475
80 3300009545 Ga0105237_10009566 Ga0105237_100095667 475
81 3300009545 Ga0105237_10009619 Ga0105237_100096192 475
82 3300009545 Ga0105237_10009851 Ga0105237_100098518 475
83 3300009545 Ga0105237_10104816 Ga0105237_101048163 475
84 3300009545 Ga0105237_10229562 Ga0105237_102295622 475
85 3300009551 Ga0105238_10011091 Ga0105238_100110911 475
86 3300009551 Ga0105238_10121797 Ga0105238_101217971 475
87 3300009553 Ga0105249_10006320 Ga0105249_100063204 475
88 3300010375 Ga0105239_10000004 Ga0105239_1000000486 475
89 3300010375 Ga0105239_10000005 Ga0105239_10000005404 475
90 3300010375 Ga0105239_10056753 Ga0105239_100567532 475
91 3300010375 Ga0105239_10065327 Ga0105239_100653272 475
92 3300010375 Ga0105239_10124308 Ga0105239_101243082 475
93 3300011119 Ga0105246_10009132 Ga0105246_100091323 475
94 3300013100 Ga0157373_10000944 Ga0157373_100009443 475
95 3300013100 Ga0157373_10068973 Ga0157373_100689732 475
96 3300013102 Ga0157371_10004718 Ga0157371_100047185 475
97 3300013104 Ga0157370_10216019 Ga0157370_102160191 475
98 3300013105 Ga0157369_10026815 Ga0157369_100268156 475
99 3300013105 Ga0157369_10099968 Ga0157369_100999683 475
100 3300013296 Ga0157374_10005238 Ga0157374_100052386 475
101 3300013297 Ga0157378_10003231 Ga0157378_100032312 475
102 3300013306 Ga0163162_10019423 Ga0163162_100194234 475
103 3300013307 Ga0157372_10000376 Ga0157372_1000037613 475
104 3300013307 Ga0157372_10015376 Ga0157372_100153763 475
105 3300013307 Ga0157372_10041659 Ga0157372_100416592 475
106 3300014969 Ga0157376_10093855 Ga0157376_100938552 475
107 3300024225 Ga0224572_1003166 Ga0224572_10031663 475
108 3300025261 Ga0209233_1000978 Ga0209233_10009782 475
109 3300025321 Ga0207656_10015806 Ga0207656_100158062 475
110 3300025903 Ga0207680_10060266 Ga0207680_100602662 475
111 3300025904 Ga0207647_10010756 Ga0207647_100107562 475
112 3300025906 Ga0207699_10006929 Ga0207699_100069293 475
113 3300025907 Ga0207645_10082892 Ga0207645_100828921 475
114 3300025910 Ga0207684_10003258 Ga0207684_1000325810 475
115 3300025911 Ga0207654_10000040 Ga0207654_1000004010 475
116 3300025911 Ga0207654_10006656 Ga0207654_100066565 475
117 3300025912 Ga0207707_10087074 Ga0207707_100870741 475
118 3300025913 Ga0207695_10000524 Ga0207695_100005248 475
119 3300025913 Ga0207695_10012394 Ga0207695_100123945 475
120 3300025914 Ga0207671_10000136 Ga0207671_1000013688 475
121 3300025914 Ga0207671_10001987 Ga0207671_1000198712 475
122 3300025914 Ga0207671_10006591 Ga0207671_100065912 475
123 3300025914 Ga0207671_10082869 Ga0207671_100828692 475
124 3300025915 Ga0207693_10000243 Ga0207693_1000024334 475
125 3300025915 Ga0207693_10001511 Ga0207693_100015113 475
126 3300025916 Ga0207663_10000901 Ga0207663_100009017 475
127 3300025917 Ga0207660_10053422 Ga0207660_100534221 475
128 3300025919 Ga0207657_10005852 Ga0207657_100058528 475
129 3300025921 Ga0207652_10195801 Ga0207652_101958011 475
130 3300025924 Ga0207694_10086485 Ga0207694_100864852 475
131 3300025927 Ga0207687_10003667 Ga0207687_100036674 475
132 3300025928 Ga0207700_10000304 Ga0207700_100003045 475
133 3300025929 Ga0207664_10098870 Ga0207664_100988702 475
134 3300025933 Ga0207706_10005804 Ga0207706_100058046 475
135 3300025935 Ga0207709_10017822 Ga0207709_100178222 475
136 3300025938 Ga0207704_10000010 Ga0207704_1000001033 475
137 3300025941 Ga0207711_10005378 Ga0207711_100053786 475
138 3300025949 Ga0207667_10005440 Ga0207667_1000544012 475
139 3300025949 Ga0207667_10038769 Ga0207667_100387694 475
140 3300025949 Ga0207667_10091754 Ga0207667_100917542 475
141 3300025961 Ga0207712_10026471 Ga0207712_100264712 475
142 3300025981 Ga0207640_10003956 Ga0207640_100039562 475
143 3300025986 Ga0207658_10017185 Ga0207658_100171854 475
144 3300026023 Ga0207677_10004561 Ga0207677_100045616 475
145 3300026023 Ga0207677_10084868 Ga0207677_100848681 475
146 3300026035 Ga0207703_10093324 Ga0207703_100933242 475
147 3300026078 Ga0207702_10001126 Ga0207702_100011266 475
148 3300026078 Ga0207702_10027479 Ga0207702_100274792 475
149 3300026089 Ga0207648_10015339 Ga0207648_100153394 475
150 3300026095 Ga0207676_10024255 Ga0207676_100242552 475
151 3300026116 Ga0207674_10024694 Ga0207674_100246944 475
152 3300026116 Ga0207674_10092251 Ga0207674_100922513 475
153 3300026142 Ga0207698_10029086 Ga0207698_100290863 475
154 3300028381 Ga0268264_10050496 Ga0268264_100504962 475
155 3300028794 Ga0307515_10000983 Ga0307515_1000098316 475
156 3300031507 Ga0307509_10037777 Ga0307509_100377773 475
157 3300033180 Ga0307510_10116318 Ga0307510_101163182 475
158 3300037853 Ga0436364_0906509 Ga0436364_0906509_260_1702 475
159 3300046472 Ga0495580_0011304 Ga0495580_0011304_3293_4732 475
160 3300046524 Ga0495648_0060295 Ga0495648_0060295_346_1788 475
161 3300046529 Ga0495652_0092487 Ga0495652_0092487_131_1570 475
162 3300046616 Ga0495668_0050349 Ga0495668_0050349_391_1833 475
163 3300047472 Ga0495686_0000098 Ga0495686_0000098_73497_74942 475
164 3300048909 Ga0496106_0065986 Ga0496106_0065986_48_1490 475
165 3300048911 Ga0496108_0194152 Ga0496108_0194152_216_1658 475
166 3300048915 Ga0496112_0110492 Ga0496112_0110492_727_2169 475
167 3300049580 Ga0501046_0000250 Ga0501046_0000250_34880_36310 475
168 3300050493 nmdc:mga0k408_22246_c1 nmdc:mga0k408_22246_c1_776_2206 475
169 3300053085 Ga0495619_0092594 Ga0495619_0092594_533_1975 475
170 3300002737 JGI25162J39368_1000012 JGI25162J39368_1000012189 476
171 3300005329 Ga0070683_100021249 Ga0070683_1000212494 476
172 3300005339 Ga0070660_100040511 Ga0070660_1000405113 476
173 3300005344 Ga0070661_100051175 Ga0070661_1000511753 476
174 3300005455 Ga0070663_100066650 Ga0070663_1000666503 476
175 3300005530 Ga0070679_100055227 Ga0070679_1000552273 476
176 3300005563 Ga0068855_100100496 Ga0068855_1001004962 476
177 3300005577 Ga0068857_100005877 Ga0068857_1000058773 476
178 3300010375 Ga0105239_10000173 Ga0105239_100001739 476
179 3300013104 Ga0157370_10038412 Ga0157370_100384123 476
180 3300013104 Ga0157370_10086504 Ga0157370_100865042 476
181 3300013296 Ga0157374_10001077 Ga0157374_1000107715 476
182 3300021361 Ga0213872_10069759 Ga0213872_100697591 476
183 3300025233 Ga0209437_100041 Ga0209437_100041234 476
184 3300025909 Ga0207705_10007952 Ga0207705_100079523 476
185 3300025914 Ga0207671_10030017 Ga0207671_100300173 476
186 3300025919 Ga0207657_10006763 Ga0207657_100067633 476
187 3300025949 Ga0207667_10135563 Ga0207667_101355631 476
188 3300026041 Ga0207639_10091434 Ga0207639_100914342 476
189 3300026067 Ga0207678_10016084 Ga0207678_100160843 476
190 3300026116 Ga0207674_10004479 Ga0207674_100044793 476
191 3300028800 Ga0265338_10147511 Ga0265338_101475112 476
192 3300037312 Ga0395899_0008310 Ga0395899_0008310_1481_2911 476
193 3300037418 Ga0395900_0007515 Ga0395900_0007515_8178_9608 476
194 3300037418 Ga0395900_0036704 Ga0395900_0036704_2695_4125 476
195 3300037466 Ga0395898_0014020 Ga0395898_0014020_652_2082 476
196 3300038443 Ga0395901_0013040 Ga0395901_0013040_2822_4252 476
197 3300038443 Ga0395901_0264858 Ga0395901_0264858_141_1571 476
198 3300039438 Ga0436360_0057515 Ga0436360_0057515_398_1828 476
199 3300039447 Ga0436361_0868006 Ga0436361_0868006_4830_6260 476
200 3300044712 Ga0453684_0001347 Ga0453684_0001347_69241_70674 476
201 3300044712 Ga0453684_0220250 Ga0453684_0220250_379_1830 476
202 3300046507 Ga0495606_0000264 Ga0495606_0000264_74932_76380 476
203 3300046512 Ga0495610_0001928 Ga0495610_0001928_14236_15684 476
204 3300046513 Ga0495616_0035156 Ga0495616_0035156_1017_2465 476
205 3300046558 Ga0495633_0000804 Ga0495633_0000804_12390_13838 476
206 3300046660 Ga0495625_0000211 Ga0495625_0000211_16807_18255 476
207 3300046665 Ga0495661_0003542 Ga0495661_0003542_5996_7444 476
208 3300046694 Ga0495649_0000090 Ga0495649_0000090_17069_18517 476
209 2162886007 SwRhRL2b_contig_2056031 SwRhRL2b_0705.00002990 477
210 3300001979 JGI24740J21852_10009228 JGI24740J21852_100092281 477
211 3300002738 JGI25154J39366_1000008 JGI25154J39366_1000008110 477
212 3300002741 JGI25157J39369_1003178 JGI25157J39369_10031782 477
213 3300003320 rootH2_10079138 rootH2_100791387 477
214 3300005288 Ga0065714_10003347 Ga0065714_100033477 477
215 3300005289 Ga0065704_10000208 Ga0065704_1000020874 477
216 3300005327 Ga0070658_10159181 Ga0070658_101591811 477
217 3300005341 Ga0070691_10001269 Ga0070691_100012693 477
218 3300005563 Ga0068855_100054315 Ga0068855_1000543151 477
219 3300005563 Ga0068855_100054945 Ga0068855_1000549453 477
220 3300005614 Ga0068856_100013501 Ga0068856_1000135013 477
221 3300005843 Ga0068860_100000019 Ga0068860_100000019169 477
222 3300009093 Ga0105240_10069212 Ga0105240_100692121 477
223 3300010375 Ga0105239_10124635 Ga0105239_101246352 477
224 3300013100 Ga0157373_10000064 Ga0157373_1000006459 477
225 3300013102 Ga0157371_10006874 Ga0157371_100068742 477
226 3300013104 Ga0157370_10036464 Ga0157370_100364644 477
227 3300013296 Ga0157374_10123631 Ga0157374_101236312 477
228 3300013306 Ga0163162_10006145 Ga0163162_100061454 477
229 3300015261 Ga0182006_1013089 Ga0182006_10130892 477
230 3300017792 Ga0163161_10084052 Ga0163161_100840521 477
231 3300025246 Ga0209646_1000045 Ga0209646_1000045112 477
232 3300025250 Ga0209026_1000075 Ga0209026_1000075120 477
233 3300025302 Ga0207426_1000159 Ga0207426_100015943 477
234 3300025909 Ga0207705_10000020 Ga0207705_10000020235 477
235 3300025917 Ga0207660_10000739 Ga0207660_100007397 477
236 3300025921 Ga0207652_10004747 Ga0207652_100047476 477
237 3300026041 Ga0207639_10042532 Ga0207639_100425321 477
238 3300026067 Ga0207678_10044520 Ga0207678_100445203 477
239 3300028381 Ga0268264_10000254 Ga0268264_100002549 477
240 3300031911 Ga0307412_10000009 Ga0307412_10000009160 477
241 3300035692 Ga0373935_0117746 Ga0373935_0117746_158_1591 477
242 3300039437 Ga0436365_0117580 Ga0436365_0117580_4313_5797 477
243 3300039447 Ga0436361_0108597 Ga0436361_0108597_527_1996 477
244 3300045051 Ga0451576_0259608 Ga0451576_0259608_339_1790 477
245 3300046524 Ga0495648_0003034 Ga0495648_0003034_821_2254 477
246 3300046524 Ga0495648_0031265 Ga0495648_0031265_44_1477 477
247 3300047443 Ga0495687_000119 Ga0495687_000119_80948_82387 477
248 3300053092 Ga0500583_0012407 Ga0500583_0012407_854_2287 477
249 3300053156 Ga0500622_0007866 Ga0500622_0007866_3252_4685 477

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11762

Arabinose_Iso_C

L-arabinose isomerase C-terminal domain

428

568

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cx7-assembly1.cif.gz_C-2 crystal structure of arabinose isomerase from hybrid ai8 0.8772 6 477
7cyy-assembly1.cif.gz_E crystal structure of arabinose isomerase from hybrid ai8 with adonitol 0.8757 6 477
4r1p-assembly1.cif.gz_C crystal structure of thermophilic geobacillus kaustophilus l-arabinose isomerase with mn2+ 0.8745 6 477
4f2d-assembly1.cif.gz_A crystal structure of escherichia coli l-arabinose isomerase (ecai) complexed with ribitol 0.8737 7 477
7cyy-assembly1.cif.gz_A crystal structure of arabinose isomerase from hybrid ai8 with adonitol 0.8732 6 477
ID Description Score Start End Superfamily
4f2dC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8361 7 179 3.40.50.10940
4f2dC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8044 7 179 3.40.50.10940
1fuiF03 Alpha Beta;Alpha-Beta Barrel;L-fucose Isomerase; Chain A, domain 3;L-fucose/L-arabinose isomerase, C-terminal 0.7093 330 475 3.20.14.10
af_P02925_28_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.6683 9 103 3.40.50.2300
4lqlD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.6622 1 176 3.40.50.10940
ID Description Score Start End GO Terms
AF-A0A519XS50-F1-model_v4 Arabinose isomerase 0.9833 13 379 GO:0005829
GO:0008733
GO:0019569
GO:0046872
AF-Q28MP9-F1-model_v4 L-arabinose isomerase protein 0.9822 4 475 GO:0005829
GO:0008733
GO:0019569
GO:0046872
AF-A0A1V5J954-F1-model_v4 L-arabinose isomerase 0.9819 154 475 GO:0005829
GO:0008733
GO:0019569
GO:0046872
AF-A0A4R1SX33-F1-model_v4 deleted 0.9814 6 364
AF-A0A7V4IFZ3-F1-model_v4 Arabinose isomerase 0.9789 3 477 GO:0005829
GO:0008733
GO:0019569
GO:0046872

Feature Viewer

pLDDT pTM Quality
92.94 0.93 High
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Predicted Structure (AlphaFold2)

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