F359433

General Info

Members Datasets Scaffolds Average Seq Length
247 172 229 305

Family's Representative Sequence

Representative Sequence 3300053117|Ga0500593_000043|Ga0500593_000043_20187_21170
Length 327
Sequence MNNQGFVTSIAPVDQLLALRVFVRIAESGAFSKAADAMNIPRPTVTKLVQDLERHLGAKLLQRTTRRVSVTPEGAAYYERATRLIADLEEMDESASHARSQPRGRIRVDVGSSVANMILIPALPAFRARHPDLQIELGVSDRSVNLVGEGVDCAIRAGTLTESSLVARRIADLDWVTCASPLYLRARGTPRHPSELETREPDPADTARVPGHVVLGYFSSQSGRAFPLEFRRKAETVVVQGRADVGVNESTAHLSGLLAGLGVGQTFRFMVAQHVADGRLRTVLDDWTRAPQTLQVVYPSGRHLSAKLRVFVDWVAEVFEPFDDRRR

Samples

Sample ID Description Type Environment
1 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
2 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
3 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
4 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
5 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
6 2738541307 Variovorax sp. GV008 Isolate Unclassified
7 2738541337 Pelomonas sp. BT06 Isolate Unclassified
8 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
9 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
10 2904456579 Variovorax sp. 2002 Isolate Unclassified
11 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
12 2919462493 Variovorax sp. 3319 Isolate Rhizosphere
13 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
14 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
15 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
16 2941471342 Luteibacter sp. 621 Isolate Unclassified
17 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
18 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
19 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
20 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
21 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
22 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
23 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
24 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
25 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
26 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
27 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
28 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
29 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
30 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
31 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
32 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
33 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
34 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
35 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
36 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
37 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
38 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
39 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
40 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
41 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
42 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
43 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
44 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
45 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
46 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
47 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
48 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
49 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
50 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
51 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
52 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
53 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
57 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
58 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
61 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
62 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
63 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
64 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
65 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
69 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
70 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
72 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
74 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
76 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
77 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
80 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
92 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
93 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
94 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
95 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
96 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
97 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
98 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
99 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
100 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
101 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
104 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
105 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
106 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
107 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
108 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
109 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
110 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
111 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
112 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
115 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
116 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
117 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
118 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
119 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
120 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
121 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
122 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
123 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
124 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
125 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
126 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
127 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
128 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
129 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
130 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
131 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
132 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
133 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
134 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
135 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
136 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
137 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
138 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
139 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
140 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
141 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
142 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
143 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
144 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
145 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
146 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
147 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
148 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
149 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
150 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
151 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
152 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
153 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
154 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
155 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
156 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
157 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
158 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
159 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
160 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
161 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
162 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
163 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
164 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
165 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
166 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
167 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
168 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
169 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
170 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
171 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
172 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.71
Metatranscriptomes 0
Isolates 7.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 36.03
Nodule 0.81
Rhizoplane 3.64
Rhizosphere 40.89
Stem 0
Stem Tuber 0
Unclassified 18.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000138 3300002704 Bacteria 34553
2 JGI25156J39149_1006526 3300002705 Bacteria 3176
3 JGI25154J39366_1000215 3300002738 Bacteria 39697
4 JGI25157J39369_1008910 3300002741 Bacteria 1372
5 JGI25159J45721_1019537 3300002987 Bacteria 1331
6 JGI25151J46595_10000245 3300003187 Bacteria 63602
7 JGI25151J46595_10005763 3300003187 Bacteria 6347
8 rootH1_10009605 3300003316 Bacteria 1978
9 rootH1_10060613 3300003316 Bacteria 2291
10 rootH2_10030994 3300003320 Bacteria 5005
11 rootH2_10170803 3300003320 Unclassified 1282
12 rootL2_10087251 3300003322 Bacteria 1941
13 rootH1_10008494 3300003323 Bacteria 14707
14 rootH1_10018575 3300003323 Bacteria 2727
15 JGI25160J50197_1013646 3300003354 Bacteria 2758
16 Ga0055539_1000116 3300003752 Bacteria 88977
17 Ga0055533_1000016 3300003756 Bacteria 396179
18 Ga0055524_1000102 3300003775 Bacteria 105348
19 Ga0055524_1000106 3300003775 Bacteria 103668
20 Ga0055530_10000760 3300003791 Bacteria 26812
21 Ga0055530_10001129 3300003791 Bacteria 20823
22 Ga0055530_10024387 3300003791 Bacteria 1716
23 Ga0055540_1000002 3300003792 Bacteria 436954
24 Ga0055540_1000110 3300003792 Bacteria 88766
25 Ga0055540_1003723 3300003792 Bacteria 7208
26 Ga0055531_10000007 3300003794 Bacteria 225289
27 Ga0055531_10002707 3300003794 Bacteria 11670
28 Ga0055531_10019821 3300003794 Bacteria 2698
29 Ga0055531_10044061 3300003794 Bacteria 1255
30 Ga0065165_1000087 3300005262 Bacteria 152471
31 Ga0065165_1002507 3300005262 Bacteria 15346
32 Ga0065704_10079587 3300005289 Bacteria 4123
33 Ga0070658_10085484 3300005327 Bacteria 2594
34 Ga0070658_10275414 3300005327 Bacteria 1432
35 Ga0070668_100319085 3300005347 Bacteria 1308
36 Ga0070708_100508944 3300005445 Bacteria 1136
37 Ga0070678_100007864 3300005456 Bacteria 6345
38 Ga0070706_100138282 3300005467 Bacteria 2273
39 Ga0070699_100137654 3300005518 Bacteria 2154
40 Ga0070697_100100945 3300005536 Bacteria 2397
41 Ga0070672_100124206 3300005543 Bacteria 2116
42 Ga0070665_100339911 3300005548 Bacteria 1506
43 Ga0075365_10050800 3300006038 Bacteria 2736
44 Ga0075364_10137722 3300006051 Bacteria 1641
45 Ga0075362_10010630 3300006177 Bacteria 3601
46 Ga0075370_10004054 3300006353 Bacteria 7043
47 Ga0068865_100335027 3300006881 Bacteria 1221
48 Ga0079104_1000017 3300006946 Bacteria 313784
49 Ga0099794_10055863 3300007265 Bacteria 1909
50 Ga0105240_10011317 3300009093 Bacteria 12430
51 Ga0105240_10029013 3300009093 Bacteria 7216
52 Ga0114129_10320624 3300009147 Bacteria 2060
53 Ga0105243_10725158 3300009148 Unclassified 972
54 Ga0157370_10010652 3300013104 Bacteria 9679
55 Ga0157369_10000504 3300013105 Bacteria 51436
56 Ga0163162_10095038 3300013306 Bacteria 3067
57 Ga0163162_10303534 3300013306 Bacteria 1729
58 Ga0182008_10005456 3300014497 Bacteria 7242
59 Ga0182008_10005644 3300014497 Bacteria 7088
60 Ga0182008_10013930 3300014497 Bacteria 4218
61 Ga0182006_1028842 3300015261 Bacteria 2253
62 Ga0182006_1041097 3300015261 Bacteria 1817
63 Ga0182007_10002263 3300015262 Bacteria 9704
64 Ga0182007_10003598 3300015262 Bacteria 7276
65 Ga0213872_10000086 3300021361 Bacteria 84955
66 Ga0213872_10002148 3300021361 Bacteria 11822
67 Ga0209435_100193 3300025206 Bacteria 17937
68 Ga0209674_100041 3300025226 Bacteria 396231
69 Ga0209147_105827 3300025229 Bacteria 1787
70 Ga0209563_100043 3300025230 Bacteria 397271
71 Ga0209646_1000215 3300025246 Bacteria 62975
72 Ga0209026_1006031 3300025250 Bacteria 3082
73 Ga0209677_100077 3300025253 Bacteria 126245
74 Ga0209677_100923 3300025253 Bacteria 14371
75 Ga0209759_1000439 3300025256 Bacteria 48972
76 Ga0209673_1002704 3300025273 Bacteria 11762
77 Ga0209130_1000934 3300025284 Bacteria 23359
78 Ga0209675_1007310 3300025291 Bacteria 4260
79 Ga0209025_1000096 3300025294 Bacteria 239153
80 Ga0209025_1000192 3300025294 Bacteria 150108
81 Ga0209758_1005405 3300025297 Bacteria 9868
82 Ga0209050_1000534 3300025298 Bacteria 63027
83 Ga0209050_1000828 3300025298 Bacteria 42850
84 Ga0209050_1003799 3300025298 Bacteria 10782
85 Ga0209050_1006976 3300025298 Bacteria 6506
86 Ga0209050_1007300 3300025298 Bacteria 6239
87 Ga0209050_1012192 3300025298 Bacteria 3972
88 Ga0209050_1015526 3300025298 Bacteria 3189
89 Ga0209256_1000011 3300025299 Bacteria 865309
90 Ga0209256_1000225 3300025299 Bacteria 103720
91 Ga0207426_1000301 3300025302 Bacteria 96798
92 Ga0209051_1000024 3300025303 Bacteria 437007
93 Ga0209051_1000092 3300025303 Bacteria 170056
94 Ga0209051_1000148 3300025303 Bacteria 132600
95 Ga0209051_1024483 3300025303 Bacteria 2481
96 Ga0209051_1026357 3300025303 Bacteria 2344
97 Ga0209051_1028689 3300025303 Bacteria 2193
98 Ga0209051_1064844 3300025303 Bacteria 1130
99 Ga0209257_1000021 3300025304 Bacteria 771986
100 Ga0209257_1000079 3300025304 Bacteria 316420
101 Ga0209257_1000380 3300025304 Bacteria 88824
102 Ga0209257_1012482 3300025304 Bacteria 3916
103 Ga0207647_10000234 3300025904 Bacteria 45343
104 Ga0207695_10010242 3300025913 Bacteria 11492
105 Ga0207695_10358718 3300025913 Bacteria 1344
106 Ga0207646_10044654 3300025922 Bacteria 3977
107 Ga0207690_10107510 3300025932 Bacteria 2004
108 Ga0207665_10060070 3300025939 Bacteria 2573
109 Ga0207691_10091951 3300025940 Bacteria 2717
110 Ga0207651_10445804 3300025960 Bacteria 1110
111 Ga0207648_10173151 3300026089 Bacteria 1908
112 Ga0207683_10045276 3300026121 Bacteria 3847
113 Ga0209281_1000042 3300027111 Bacteria 344748
114 Ga0307517_10199016 3300028786 Unclassified 1256
115 Ga0307515_10000028 3300028794 Bacteria 368467
116 Ga0307515_10036008 3300028794 Bacteria 8025
117 Ga0307515_10091407 3300028794 Bacteria 3803
118 Ga0307511_10000058 3300030521 Bacteria 93342
119 Ga0316177_1116192 3300030731 Bacteria 4242
120 Ga0314311_1034245 3300030733 Bacteria 5915
121 Ga0316178_1131215 3300030735 Bacteria 2098
122 Ga0316183_1116871 3300030742 Bacteria 1645
123 Ga0316181_1050079 3300030744 Bacteria 3534
124 Ga0316182_1036195 3300030745 Bacteria 1739
125 Ga0265327_10000108 3300031251 Bacteria 183209
126 Ga0307513_10105534 3300031456 Bacteria 2826
127 Ga0307513_10201610 3300031456 Bacteria 1830
128 Ga0307514_10001152 3300031649 Bacteria 36151
129 Ga0307416_100031603 3300032002 Bacteria 3988
130 Ga0307416_100297746 3300032002 Bacteria 1601
131 Ga0307510_10094734 3300033180 Bacteria 2809
132 Ga0395905_0000421 3300037471 Bacteria 59264
133 Ga0436361_0088508 3300039447 Bacteria 4085
134 Ga0436361_1030340 3300039447 Bacteria 59405
135 Ga0451795_0765165 3300041456 Bacteria 3069
136 Ga0451800_0636319 3300041459 Bacteria 1348
137 Ga0451855_0642492 3300041511 Bacteria 1820
138 Ga0450898_002175 3300042134 Bacteria 2715
139 Ga0495627_000039 3300046453 Bacteria 197253
140 Ga0495638_0033369 3300046460 Bacteria 3293
141 Ga0495638_0055155 3300046460 Bacteria 2469
142 Ga0495650_0000179 3300046471 Bacteria 138628
143 Ga0495650_0001185 3300046471 Bacteria 27668
144 Ga0495605_0043509 3300046474 Bacteria 2226
145 Ga0495584_0000002 3300046491 Bacteria 512179
146 Ga0495607_0000002 3300046501 Bacteria 414833
147 Ga0495607_0000031 3300046501 Bacteria 153964
148 Ga0495607_0000664 3300046501 Bacteria 33361
149 Ga0495607_0027772 3300046501 Bacteria 3496
150 Ga0495606_0004296 3300046507 Bacteria 14340
151 Ga0495606_0014177 3300046507 Bacteria 6239
152 Ga0495610_0007593 3300046512 Bacteria 7180
153 Ga0495616_0006724 3300046513 Bacteria 6935
154 Ga0495631_0001937 3300046518 Bacteria 12137
155 Ga0495632_0010556 3300046519 Bacteria 5454
156 Ga0495654_0006733 3300046530 Bacteria 6497
157 Ga0495609_0000014 3300046538 Bacteria 326023
158 Ga0495621_0002013 3300046539 Bacteria 5361
159 Ga0495621_0002796 3300046539 Bacteria 4746
160 Ga0495656_0000300 3300046615 Bacteria 17175
161 Ga0495668_0017192 3300046616 Bacteria 4200
162 Ga0495625_0031700 3300046660 Bacteria 3929
163 Ga0495625_0035587 3300046660 Bacteria 3669
164 Ga0495661_0037709 3300046665 Bacteria 3016
165 Ga0495649_0002430 3300046694 Bacteria 13126
166 Ga0495649_0066942 3300046694 Bacteria 1927
167 Ga0495672_0009528 3300047320 Bacteria 7028
168 Ga0495672_0024672 3300047320 Bacteria 3868
169 Ga0495687_000017 3300047443 Bacteria 350429
170 Ga0495687_007219 3300047443 Bacteria 6601
171 Ga0495686_0016816 3300047472 Bacteria 4946
172 Ga0495686_0101558 3300047472 Bacteria 1734
173 Ga0495686_0202699 3300047472 Bacteria 1138
174 Ga0495615_0032468 3300048090 Bacteria 1259
175 Ga0496101_0294521 3300048904 Bacteria 1270
176 Ga0496102_0002079 3300048905 Bacteria 17223
177 Ga0496104_0067977 3300048907 Bacteria 3385
178 Ga0496105_0002089 3300048908 Bacteria 14447
179 Ga0496106_0038249 3300048909 Bacteria 3590
180 Ga0496114_0002915 3300048917 Bacteria 13116
181 Ga0496114_0005994 3300048917 Bacteria 9568
182 Ga0496117_0042467 3300048920 Bacteria 3318
183 Ga0496118_0002456 3300048921 Bacteria 24957
184 Ga0496121_0000161 3300048924 Bacteria 145828
185 Ga0496121_0195401 3300048924 Bacteria 1446
186 Ga0496121_0351335 3300048924 Bacteria 982
187 Ga0496122_0147323 3300048925 Bacteria 1460
188 Ga0496123_0007210 3300048926 Bacteria 10549
189 Ga0496124_0117246 3300048927 Bacteria 2133
190 Ga0496125_0056917 3300048928 Bacteria 3171
191 Ga0496125_0156248 3300048928 Bacteria 1558
192 Ga0495682_0126665 3300049460 Bacteria 914
193 Ga0501225_0033022 3300049705 Bacteria 1423
194 Ga0501262_000581 3300049759 Bacteria 4352
195 nmdc:mga0yw44_46813_c1 3300050492 Bacteria 2599
196 nmdc:mga07m45_38783_c1 3300050496 Bacteria 2660
197 nmdc:mga07m45_973_c1 3300050496 Bacteria 12600
198 nmdc:mga05p37_637912_c1 3300050507 Unclassified 1195
199 nmdc:mga0n895_296331_c1 3300050512 Bacteria 1640
200 Ga0500578_0059235 3300053086 Bacteria 2447
201 Ga0500644_0005607 3300053088 Bacteria 3176
202 Ga0500644_0012182 3300053088 Bacteria 2371
203 Ga0500644_0033247 3300053088 Bacteria 1654
204 Ga0500562_001029 3300053108 Bacteria 6833
205 Ga0500562_011825 3300053108 Bacteria 2217
206 Ga0500562_038012 3300053108 Bacteria 1278
207 Ga0500593_000043 3300053117 Bacteria 45165
208 Ga0500594_0000262 3300053118 Bacteria 12351
209 Ga0500594_0001215 3300053118 Bacteria 5568
210 Ga0500607_001683 3300053121 Bacteria 19314
211 Ga0500607_018562 3300053121 Bacteria 3947
212 Ga0500655_031287 3300053133 Bacteria 1026
213 Ga0500658_0000033 3300053134 Bacteria 89738
214 Ga0500658_0002224 3300053134 Bacteria 7533
215 Ga0500559_0000069 3300053136 Bacteria 82288
216 Ga0500559_0000260 3300053136 Bacteria 41596
217 Ga0500564_068375 3300053138 Bacteria 1605
218 Ga0500568_0001051 3300053139 Bacteria 18831
219 Ga0500568_0085410 3300053139 Bacteria 1195
220 Ga0500573_0033849 3300053140 Bacteria 2947
221 Ga0500604_0001249 3300053151 Bacteria 7088
222 Ga0500604_0025744 3300053151 Bacteria 1692
223 Ga0500622_0000713 3300053156 Bacteria 29064
224 Ga0500622_0000881 3300053156 Bacteria 25562
225 Ga0500636_0026442 3300053177 Bacteria 3429
226 Ga0500636_0053336 3300053177 Bacteria 2373
227 Ga0500570_032675 3300053724 Bacteria 2798
228 Ga0500645_004446 3300053730 Bacteria 5380
229 Ga0500596_014525 3300053735 Bacteria 1184

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050512 nmdc:mga0n895_296331_c1 nmdc:mga0n895_296331_c1_70_828 246
2 3300013105 Ga0157369_10000504 Ga0157369_100005043 265
3 3300025904 Ga0207647_10000234 Ga0207647_100002343 265
4 3300048924 Ga0496121_0000161 Ga0496121_0000161_111780_112706 265
5 3300048928 Ga0496125_0056917 Ga0496125_0056917_1667_2593 265
6 3300048920 Ga0496117_0042467 Ga0496117_0042467_1795_2721 268
7 3300048921 Ga0496118_0002456 Ga0496118_0002456_1918_2844 268
8 3300015261 Ga0182006_1041097 Ga0182006_10410971 269
9 3300053133 Ga0500655_031287 Ga0500655_031287_197_1012 269
10 3300048904 Ga0496101_0294521 Ga0496101_0294521_411_1244 274
11 3300048924 Ga0496121_0351335 Ga0496121_0351335_128_967 276
12 3300049460 Ga0495682_0126665 Ga0495682_0126665_13_882 276
13 3300046501 Ga0495607_0000002 Ga0495607_0000002_201487_202461 287
14 3300053139 Ga0500568_0085410 Ga0500568_0085410_309_1184 289
15 iso_pu_bacteria 2562617112 2563060107 289
16 iso_pu_bacteria 2711768613 2713475284 289
17 iso_pu_bacteria 2857576091 2857578942 289
18 3300046453 Ga0495627_000039 Ga0495627_000039_110773_111699 292
19 3300046471 Ga0495650_0001185 Ga0495650_0001185_16867_17793 292
20 3300046501 Ga0495607_0000031 Ga0495607_0000031_41688_42620 292
21 3300046501 Ga0495607_0027772 Ga0495607_0027772_2522_3448 292
22 3300046538 Ga0495609_0000014 Ga0495609_0000014_144327_145253 292
23 3300047320 Ga0495672_0024672 Ga0495672_0024672_2407_3411 292
24 3300053140 Ga0500573_0033849 Ga0500573_0033849_882_1808 292
25 3300046501 Ga0495607_0000664 Ga0495607_0000664_2720_3682 295
26 iso_pu_bacteria 2920760137 2920766005 295
27 3300041459 Ga0451800_0636319 Ga0451800_0636319_352_1296 296
28 iso_pu_bacteria 2941471342 2941475015 296
29 iso_pu_bacteria 2643221592 2643968228 297
30 iso_pu_bacteria 2643221625 2644143619 297
31 iso_pu_bacteria 2643221648 2644272006 297
32 iso_pu_bacteria 2738541307 2738883926 297
33 iso_pu_bacteria 2738541337 2739058924 297
34 iso_pu_bacteria 2904449895 2904454689 297
35 iso_pu_bacteria 2904456579 2904460388 297
36 iso_pu_bacteria 2904541872 2904546283 297
37 iso_pu_bacteria 2919462493 2919464199 297
38 iso_pu_bacteria 2928084124 2928088895 297
39 iso_pu_bacteria 2929160207 2929164098 297
40 iso_pu_bacteria 2945909444 2945912854 297
41 iso_pu_bacteria 2954767861 2954771755 297
42 3300025229 Ga0209147_105827 Ga0209147_1058272 298
43 3300025303 Ga0209051_1028689 Ga0209051_10286892 298
44 3300002987 JGI25159J45721_1019537 JGI25159J45721_10195372 299
45 3300003187 JGI25151J46595_10000245 JGI25151J46595_1000024550 299
46 3300003354 JGI25160J50197_1013646 JGI25160J50197_10136462 299
47 3300025284 Ga0209130_1000934 Ga0209130_100093423 299
48 3300025294 Ga0209025_1000192 Ga0209025_1000192121 299
49 3300025297 Ga0209758_1005405 Ga0209758_10054056 299
50 3300025302 Ga0207426_1000301 Ga0207426_100030112 299
51 3300037471 Ga0395905_0000421 Ga0395905_0000421_12795_13697 299
52 3300046512 Ga0495610_0007593 Ga0495610_0007593_5936_6838 299
53 3300014497 Ga0182008_10005456 Ga0182008_100054566 300
54 3300015262 Ga0182007_10002263 Ga0182007_100022635 300
55 3300021361 Ga0213872_10002148 Ga0213872_1000214811 300
56 3300039447 Ga0436361_0088508 Ga0436361_0088508_2211_3125 300
57 3300046471 Ga0495650_0000179 Ga0495650_0000179_24369_25271 300
58 3300046491 Ga0495584_0000002 Ga0495584_0000002_295139_296041 300
59 3300046507 Ga0495606_0004296 Ga0495606_0004296_5553_6455 300
60 3300046507 Ga0495606_0014177 Ga0495606_0014177_4858_5760 300
61 3300046665 Ga0495661_0037709 Ga0495661_0037709_617_1570 300
62 3300046694 Ga0495649_0066942 Ga0495649_0066942_860_1762 300
63 3300047443 Ga0495687_000017 Ga0495687_000017_269476_270378 300
64 3300048927 Ga0496124_0117246 Ga0496124_0117246_258_1184 300
65 3300053086 Ga0500578_0059235 Ga0500578_0059235_256_1161 300
66 3300053730 Ga0500645_004446 Ga0500645_004446_326_1231 300
67 3300002704 JGI25155J39150_1000138 JGI25155J39150_100013814 301
68 3300002705 JGI25156J39149_1006526 JGI25156J39149_10065262 301
69 3300002738 JGI25154J39366_1000215 JGI25154J39366_100021521 301
70 3300002741 JGI25157J39369_1008910 JGI25157J39369_10089102 301
71 3300003187 JGI25151J46595_10005763 JGI25151J46595_100057634 301
72 3300003316 rootH1_10009605 rootH1_100096052 301
73 3300003316 rootH1_10060613 rootH1_100606132 301
74 3300003320 rootH2_10030994 rootH2_100309947 301
75 3300003320 rootH2_10170803 rootH2_101708032 301
76 3300003322 rootL2_10087251 rootL2_100872511 301
77 3300003323 rootH1_10008494 rootH1_1000849413 301
78 3300003323 rootH1_10018575 rootH1_100185754 301
79 3300003752 Ga0055539_1000116 Ga0055539_100011663 301
80 3300003756 Ga0055533_1000016 Ga0055533_1000016317 301
81 3300003775 Ga0055524_1000102 Ga0055524_100010243 301
82 3300003775 Ga0055524_1000106 Ga0055524_100010613 301
83 3300003791 Ga0055530_10000760 Ga0055530_1000076010 301
84 3300003791 Ga0055530_10001129 Ga0055530_1000112913 301
85 3300003791 Ga0055530_10024387 Ga0055530_100243872 301
86 3300003792 Ga0055540_1000002 Ga0055540_1000002156 301
87 3300003792 Ga0055540_1000110 Ga0055540_100011076 301
88 3300003792 Ga0055540_1003723 Ga0055540_10037232 301
89 3300003794 Ga0055531_10000007 Ga0055531_1000000725 301
90 3300003794 Ga0055531_10002707 Ga0055531_100027074 301
91 3300003794 Ga0055531_10019821 Ga0055531_100198214 301
92 3300003794 Ga0055531_10044061 Ga0055531_100440612 301
93 3300005262 Ga0065165_1000087 Ga0065165_100008793 301
94 3300005262 Ga0065165_1002507 Ga0065165_10025079 301
95 3300005289 Ga0065704_10079587 Ga0065704_100795873 301
96 3300005327 Ga0070658_10085484 Ga0070658_100854841 301
97 3300005327 Ga0070658_10275414 Ga0070658_102754142 301
98 3300005347 Ga0070668_100319085 Ga0070668_1003190852 301
99 3300005445 Ga0070708_100508944 Ga0070708_1005089441 301
100 3300005456 Ga0070678_100007864 Ga0070678_1000078641 301
101 3300005467 Ga0070706_100138282 Ga0070706_1001382821 301
102 3300005518 Ga0070699_100137654 Ga0070699_1001376542 301
103 3300005536 Ga0070697_100100945 Ga0070697_1001009453 301
104 3300005543 Ga0070672_100124206 Ga0070672_1001242062 301
105 3300005548 Ga0070665_100339911 Ga0070665_1003399112 301
106 3300006038 Ga0075365_10050800 Ga0075365_100508004 301
107 3300006051 Ga0075364_10137722 Ga0075364_101377222 301
108 3300006177 Ga0075362_10010630 Ga0075362_100106304 301
109 3300006353 Ga0075370_10004054 Ga0075370_100040548 301
110 3300006881 Ga0068865_100335027 Ga0068865_1003350272 301
111 3300006946 Ga0079104_1000017 Ga0079104_1000017289 301
112 3300007265 Ga0099794_10055863 Ga0099794_100558632 301
113 3300009093 Ga0105240_10011317 Ga0105240_100113177 301
114 3300009093 Ga0105240_10029013 Ga0105240_100290137 301
115 3300009147 Ga0114129_10320624 Ga0114129_103206241 301
116 3300009148 Ga0105243_10725158 Ga0105243_107251581 301
117 3300013104 Ga0157370_10010652 Ga0157370_100106522 301
118 3300013306 Ga0163162_10095038 Ga0163162_100950382 301
119 3300013306 Ga0163162_10303534 Ga0163162_103035342 301
120 3300014497 Ga0182008_10005644 Ga0182008_100056444 301
121 3300014497 Ga0182008_10013930 Ga0182008_100139303 301
122 3300015261 Ga0182006_1028842 Ga0182006_10288423 301
123 3300015262 Ga0182007_10003598 Ga0182007_100035988 301
124 3300021361 Ga0213872_10000086 Ga0213872_1000008629 301
125 3300025206 Ga0209435_100193 Ga0209435_10019311 301
126 3300025226 Ga0209674_100041 Ga0209674_10004168 301
127 3300025230 Ga0209563_100043 Ga0209563_10004368 301
128 3300025246 Ga0209646_1000215 Ga0209646_100021541 301
129 3300025250 Ga0209026_1006031 Ga0209026_10060313 301
130 3300025253 Ga0209677_100077 Ga0209677_10007768 301
131 3300025253 Ga0209677_100923 Ga0209677_1009234 301
132 3300025256 Ga0209759_1000439 Ga0209759_100043931 301
133 3300025273 Ga0209673_1002704 Ga0209673_10027045 301
134 3300025291 Ga0209675_1007310 Ga0209675_10073105 301
135 3300025294 Ga0209025_1000096 Ga0209025_1000096149 301
136 3300025298 Ga0209050_1000534 Ga0209050_100053416 301
137 3300025298 Ga0209050_1000828 Ga0209050_100082813 301
138 3300025298 Ga0209050_1003799 Ga0209050_10037994 301
139 3300025298 Ga0209050_1006976 Ga0209050_10069768 301
140 3300025298 Ga0209050_1007300 Ga0209050_10073007 301
141 3300025298 Ga0209050_1012192 Ga0209050_10121923 301
142 3300025298 Ga0209050_1015526 Ga0209050_10155262 301
143 3300025299 Ga0209256_1000011 Ga0209256_1000011724 301
144 3300025299 Ga0209256_1000225 Ga0209256_1000225110 301
145 3300025303 Ga0209051_1000024 Ga0209051_1000024157 301
146 3300025303 Ga0209051_1000092 Ga0209051_100009216 301
147 3300025303 Ga0209051_1000148 Ga0209051_1000148129 301
148 3300025303 Ga0209051_1024483 Ga0209051_10244834 301
149 3300025303 Ga0209051_1026357 Ga0209051_10263572 301
150 3300025303 Ga0209051_1064844 Ga0209051_10648441 301
151 3300025304 Ga0209257_1000021 Ga0209257_1000021204 301
152 3300025304 Ga0209257_1000079 Ga0209257_1000079157 301
153 3300025304 Ga0209257_1000380 Ga0209257_100038076 301
154 3300025304 Ga0209257_1012482 Ga0209257_10124822 301
155 3300025913 Ga0207695_10010242 Ga0207695_100102427 301
156 3300025913 Ga0207695_10358718 Ga0207695_103587182 301
157 3300025922 Ga0207646_10044654 Ga0207646_100446543 301
158 3300025932 Ga0207690_10107510 Ga0207690_101075103 301
159 3300025939 Ga0207665_10060070 Ga0207665_100600702 301
160 3300025940 Ga0207691_10091951 Ga0207691_100919512 301
161 3300025960 Ga0207651_10445804 Ga0207651_104458041 301
162 3300026089 Ga0207648_10173151 Ga0207648_101731512 301
163 3300026121 Ga0207683_10045276 Ga0207683_100452763 301
164 3300027111 Ga0209281_1000042 Ga0209281_100004261 301
165 3300028786 Ga0307517_10199016 Ga0307517_101990162 301
166 3300028794 Ga0307515_10000028 Ga0307515_1000002845 301
167 3300028794 Ga0307515_10036008 Ga0307515_100360082 301
168 3300028794 Ga0307515_10091407 Ga0307515_100914073 301
169 3300030521 Ga0307511_10000058 Ga0307511_1000005824 301
170 3300030731 Ga0316177_1116192 Ga0316177_11161922 301
171 3300030733 Ga0314311_1034245 Ga0314311_10342452 301
172 3300030735 Ga0316178_1131215 Ga0316178_11312152 301
173 3300030742 Ga0316183_1116871 Ga0316183_11168712 301
174 3300030744 Ga0316181_1050079 Ga0316181_10500792 301
175 3300030745 Ga0316182_1036195 Ga0316182_10361952 301
176 3300031251 Ga0265327_10000108 Ga0265327_10000108109 301
177 3300031456 Ga0307513_10105534 Ga0307513_101055343 301
178 3300031456 Ga0307513_10201610 Ga0307513_102016102 301
179 3300031649 Ga0307514_10001152 Ga0307514_1000115229 301
180 3300032002 Ga0307416_100031603 Ga0307416_1000316032 301
181 3300032002 Ga0307416_100297746 Ga0307416_1002977462 301
182 3300033180 Ga0307510_10094734 Ga0307510_100947343 301
183 3300039447 Ga0436361_1030340 Ga0436361_1030340_29660_30616 301
184 3300041456 Ga0451795_0765165 Ga0451795_0765165_607_1578 301
185 3300041511 Ga0451855_0642492 Ga0451855_0642492_274_1215 301
186 3300042134 Ga0450898_002175 Ga0450898_002175_970_1884 301
187 3300046460 Ga0495638_0033369 Ga0495638_0033369_354_1271 301
188 3300046460 Ga0495638_0055155 Ga0495638_0055155_951_1862 301
189 3300046474 Ga0495605_0043509 Ga0495605_0043509_629_1573 301
190 3300046513 Ga0495616_0006724 Ga0495616_0006724_56_973 301
191 3300046518 Ga0495631_0001937 Ga0495631_0001937_5453_6370 301
192 3300046519 Ga0495632_0010556 Ga0495632_0010556_3129_4073 301
193 3300046530 Ga0495654_0006733 Ga0495654_0006733_371_1288 301
194 3300046539 Ga0495621_0002013 Ga0495621_0002013_3591_4508 301
195 3300046539 Ga0495621_0002796 Ga0495621_0002796_894_1808 301
196 3300046615 Ga0495656_0000300 Ga0495656_0000300_6899_7813 301
197 3300046616 Ga0495668_0017192 Ga0495668_0017192_2841_3758 301
198 3300046660 Ga0495625_0031700 Ga0495625_0031700_869_1837 301
199 3300046660 Ga0495625_0035587 Ga0495625_0035587_608_1552 301
200 3300046694 Ga0495649_0002430 Ga0495649_0002430_4288_5232 301
201 3300047320 Ga0495672_0009528 Ga0495672_0009528_1029_1934 301
202 3300047443 Ga0495687_007219 Ga0495687_007219_3332_4276 301
203 3300047472 Ga0495686_0016816 Ga0495686_0016816_3803_4759 301
204 3300047472 Ga0495686_0101558 Ga0495686_0101558_642_1553 301
205 3300047472 Ga0495686_0202699 Ga0495686_0202699_32_943 301
206 3300048090 Ga0495615_0032468 Ga0495615_0032468_46_960 301
207 3300048905 Ga0496102_0002079 Ga0496102_0002079_9589_10530 301
208 3300048907 Ga0496104_0067977 Ga0496104_0067977_123_1037 301
209 3300048908 Ga0496105_0002089 Ga0496105_0002089_11608_12522 301
210 3300048909 Ga0496106_0038249 Ga0496106_0038249_42_956 301
211 3300048917 Ga0496114_0002915 Ga0496114_0002915_2839_3750 301
212 3300048917 Ga0496114_0005994 Ga0496114_0005994_3973_4911 301
213 3300048924 Ga0496121_0195401 Ga0496121_0195401_456_1361 301
214 3300048925 Ga0496122_0147323 Ga0496122_0147323_80_997 301
215 3300048926 Ga0496123_0007210 Ga0496123_0007210_1704_2621 301
216 3300048928 Ga0496125_0156248 Ga0496125_0156248_587_1504 301
217 3300049705 Ga0501225_0033022 Ga0501225_0033022_426_1343 301
218 3300049759 Ga0501262_000581 Ga0501262_000581_2358_3275 301
219 3300050492 nmdc:mga0yw44_46813_c1 nmdc:mga0yw44_46813_c1_1477_2394 301
220 3300050496 nmdc:mga07m45_38783_c1 nmdc:mga07m45_38783_c1_56_997 301
221 3300050496 nmdc:mga07m45_973_c1 nmdc:mga07m45_973_c1_8858_9799 301
222 3300050507 nmdc:mga05p37_637912_c1 nmdc:mga05p37_637912_c1_117_1028 301
223 3300053088 Ga0500644_0005607 Ga0500644_0005607_104_1048 301
224 3300053088 Ga0500644_0012182 Ga0500644_0012182_77_988 301
225 3300053088 Ga0500644_0033247 Ga0500644_0033247_162_1112 301
226 3300053108 Ga0500562_001029 Ga0500562_001029_3947_4858 301
227 3300053108 Ga0500562_011825 Ga0500562_011825_820_1764 301
228 3300053108 Ga0500562_038012 Ga0500562_038012_146_1063 301
229 3300053117 Ga0500593_000043 Ga0500593_000043_20187_21170 301
230 3300053118 Ga0500594_0000262 Ga0500594_0000262_5803_6744 301
231 3300053118 Ga0500594_0001215 Ga0500594_0001215_2601_3512 301
232 3300053121 Ga0500607_001683 Ga0500607_001683_8297_9211 301
233 3300053121 Ga0500607_018562 Ga0500607_018562_779_1696 301
234 3300053134 Ga0500658_0000033 Ga0500658_0000033_80616_81533 301
235 3300053134 Ga0500658_0002224 Ga0500658_0002224_1300_2244 301
236 3300053136 Ga0500559_0000069 Ga0500559_0000069_26486_27397 301
237 3300053136 Ga0500559_0000260 Ga0500559_0000260_5411_6352 301
238 3300053138 Ga0500564_068375 Ga0500564_068375_477_1415 301
239 3300053139 Ga0500568_0001051 Ga0500568_0001051_5652_6569 301
240 3300053151 Ga0500604_0001249 Ga0500604_0001249_444_1355 301
241 3300053151 Ga0500604_0025744 Ga0500604_0025744_483_1454 301
242 3300053156 Ga0500622_0000713 Ga0500622_0000713_8346_9296 301
243 3300053156 Ga0500622_0000881 Ga0500622_0000881_7877_8788 301
244 3300053177 Ga0500636_0026442 Ga0500636_0026442_460_1410 301
245 3300053177 Ga0500636_0053336 Ga0500636_0053336_143_1054 301
246 3300053724 Ga0500570_032675 Ga0500570_032675_1005_1976 301
247 3300053735 Ga0500596_014525 Ga0500596_014525_192_1109 301

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

16

75

0.97

PF03466

LysR_substrate

LysR substrate binding domain

99

320

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.96 1 83
3mz1-assembly2.cif.gz_C the crystal structure of a possible transcription regulator protein from sinorhizobium meliloti 1021 0.9498 90 301
3mz1-assembly1.cif.gz_A the crystal structure of a possible transcription regulator protein from sinorhizobium meliloti 1021 0.9441 90 300
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.9421 1 83
3mz1-assembly2.cif.gz_C the crystal structure of a possible transcription regulator protein from sinorhizobium meliloti 1021 0.9408 90 301
ID Description Score Start End Superfamily
af_P77700_7_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9875 5 83 1.10.10.10
af_P0ACR7_1_84_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9864 5 82 1.10.10.10
3fzvC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9846 4 72 1.10.10.10
af_P77744_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9818 4 83 1.10.10.10
af_P30864_1_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9811 4 83 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A527IW94-F1-model_v4 deleted 1.005 1 72
AF-A0A7H4MN97-F1-model_v4 LysR family transcriptional regulator 0.9814 1 75 GO:0003700
GO:0006351
GO:0043565
AF-A0A4Q5XXI8-F1-model_v4 deleted 0.9794 107 297
AF-A0A258CPL3-F1-model_v4 LysR family transcriptional regulator 0.9633 1 84 GO:0003700
GO:0006351
GO:0043565
AF-A0A527IW94-F1-model_v4 deleted 0.9515 1 72

Feature Viewer

pLDDT pTM Quality
88.96 0.72 High
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Predicted Structure (AlphaFold2)

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