F358602

General Info

Members Datasets Scaffolds Average Seq Length
246 178 200 761

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2675902999|2676200903
Length 901
Sequence IPVTTGGGQLPASGPTTGPPPERRRGLPRTGTQGGGTRAAGEDAGAAAPTGAERPATEPETAGNGAPVAGPAAASGPAGGDGGAGGDSAGGATSGNGGAASGASVVAVGGGVLAGGPVPDELPEDGAPVQPRLGHESPPLPRRLRSRLSRLSPHRETPPSALDPVLRGLLTNHPKADIGPVQLAFQVADEAHAGQVRASGHPYITHPIAVASILADLGMDVPTLCAALLHDTLEETTLTVDAIREQFGDQVALIVDAVSRLQKVNAGEMAQAEMIRRMVIAMARDPRALVVKLSDRLHNMXTLRFLPEHRQERKARQTLEVYAPLAHRLGMNSLKWELEDLSFAALYPKRYDEIVRLVADRAPSRDVYLADVTAGVQSYLSEAGIPSVVVGRPKHYYSIYQKMVVRGRSFDDIYDLVGIRVLVDSVRDCYAALGTVHANWKPIPGRFKDYIAMPKYNMYQSLHTTVIGPEGKPVELQIRTHGMHNRAEYGIAAHWKYKEEGRAASRRRGGGDEPDLARSRRRGGGEPDLASWLRQILDWQRESADPGEFLDSLRFEAPADEVFVFTPKGDVVALPAGSTPIDFAYAVHTDVGNQCVGARINGRIVTLDTELDNGDTVEVFTSRAQGAGPSEDWLTFVRSSRARSKIRQWHARERREDAVVAGRDAIARSLRRHNLPLTRLMTGEGLLSLAKDLRYADVSALYAAVGENNISAQAVVNRLLTAMGSPEATEEDVADTALPIRPLRRSAGDPGVLVSGASDIWVKLARCCTPMPGDEITGLVTRGRGVSVHRTDCANVGDPANPTADRQVSVEWAPSSGSVFLVVIQVEAMDRAKLLSDVTRVLSDHHVNILSASVTTNRENVAISRFTFEMGDAKHLGQVLGAVRRIEGVYDCFRVTSGVQA

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2508501039 Frankia saprophytica CN3 Isolate Nodule
3 2517572101 Frankia sp. DC12 Isolate Nodule
4 2527291627 Frankia casuarinae Thr Isolate Nodule
5 2527291629 Frankia sp. BMG5.23 Isolate Nodule
6 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
7 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
8 2576861822 Frankia sp. CeD Isolate Nodule
9 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
10 2619618881 Frankia sp. ACN1ag Isolate Unclassified
11 2619619003 Frankia sp. CpI1-P Isolate Nodule
12 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
13 2626541554 Frankia sp. AvcI.1 Isolate Nodule
14 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
15 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
16 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
17 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
18 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
19 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
20 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
21 2671180195 Frankia sp. CcI49 Isolate Nodule
22 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
23 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
24 2684623036 Frankia sp. CgIM4 Isolate Nodule
25 2687453737 Frankia sp. BMG5.36 Isolate Nodule
26 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
27 2710264753 Frankia sp. KB5 Isolate Nodule
28 2739367898 Nocardioides sp. CF479 Isolate Unclassified
29 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
30 2773857922 Frankia sp. CcI49 Isolate Nodule
31 2773857924 Frankia sp. CgIS1 Isolate Nodule
32 2773857933 Frankia sp. BMG5.30 Isolate Nodule
33 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
34 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
35 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
36 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
37 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
38 2939615513 Lactococcus lactis 1925 Isolate Rhizosphere
39 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
40 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
41 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
42 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
43 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
44 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
45 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
46 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
47 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
48 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
49 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
50 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
51 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
52 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
53 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
54 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
55 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
56 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
57 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
58 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
59 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
60 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
61 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
62 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
63 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
64 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
65 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
66 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
67 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
70 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
71 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
72 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
73 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
74 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
92 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
93 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
94 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
95 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
96 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
97 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
98 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
99 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
100 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
101 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
102 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
103 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
104 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
105 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
106 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
107 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
110 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
111 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
112 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
113 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
114 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
115 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
116 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
117 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
118 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
119 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
120 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
121 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
122 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
123 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
124 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
125 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
126 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
127 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
128 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
129 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
130 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
131 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
132 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
133 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
134 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
135 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
136 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
137 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
138 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
139 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
140 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
141 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
142 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
143 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
144 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
147 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
157 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
158 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
159 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
160 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
161 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
162 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
163 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
164 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
165 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
166 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
167 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
168 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
169 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
170 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
171 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
172 637000116 Frankia casuarinae CcI3 Isolate Nodule
173 8002775197 Frankia nepalensis CN7 Isolate Nodule
174 8002784119 Frankia sp. AgB1.9 Isolate Nodule
175 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
176 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
177 8054920844 Frankia tisae Agncl-8 Isolate Nodule
178 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.89
Metatranscriptomes 0.41
Isolates 18.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.41
Nodule 9.76
Rhizoplane 4.47
Rhizosphere 74.39
Stem 0
Stem Tuber 0
Unclassified 10.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10005895 3300005327 Bacteria 9940
2 Ga0070658_10019809 3300005327 Bacteria 5388
3 Ga0070658_10056904 3300005327 Bacteria 3180
4 Ga0070659_100000127 3300005366 Bacteria 57549
5 Ga0070709_10000283 3300005434 Bacteria 32257
6 Ga0070714_100000403 3300005435 Bacteria 31860
7 Ga0070714_100001584 3300005435 Bacteria 16523
8 Ga0070713_100003491 3300005436 Bacteria 10371
9 Ga0070713_100004912 3300005436 Bacteria 9074
10 Ga0070710_10000160 3300005437 Bacteria 31176
11 Ga0070708_100002356 3300005445 Bacteria 14625
12 Ga0070708_100003372 3300005445 Bacteria 12516
13 Ga0070708_100103353 3300005445 Bacteria 2612
14 Ga0070681_10009958 3300005458 Bacteria 9371
15 Ga0070681_10022198 3300005458 Bacteria 6371
16 Ga0070706_100000867 3300005467 Bacteria 33269
17 Ga0070706_100004922 3300005467 Bacteria 12783
18 Ga0070706_100007629 3300005467 Bacteria 10126
19 Ga0070707_100004689 3300005468 Bacteria 12810
20 Ga0070707_100012449 3300005468 Bacteria 7946
21 Ga0070707_100013518 3300005468 Bacteria 7637
22 Ga0070707_100039900 3300005468 Bacteria 4490
23 Ga0070698_100003847 3300005471 Bacteria 16510
24 Ga0070698_100015888 3300005471 Bacteria 7948
25 Ga0070698_100029303 3300005471 Bacteria 5713
26 Ga0070679_100103022 3300005530 Bacteria 2840
27 Ga0068859_100000042 3300005617 Bacteria 158982
28 Ga0068863_100001046 3300005841 Bacteria 27696
29 Ga0068858_100000036 3300005842 Bacteria 138467
30 Ga0068858_100000068 3300005842 Bacteria 105957
31 Ga0068858_100002449 3300005842 Bacteria 18744
32 Ga0068862_100000623 3300005844 Bacteria 36811
33 Ga0081455_10000115 3300005937 Bacteria 91703
34 Ga0081539_10007844 3300005985 Bacteria 9534
35 Ga0070717_10002215 3300006028 Bacteria 13665
36 Ga0070717_10005279 3300006028 Bacteria 9419
37 Ga0070717_10024113 3300006028 Bacteria 4827
38 Ga0070716_100001026 3300006173 Bacteria 12218
39 Ga0070712_100001077 3300006175 Bacteria 16458
40 Ga0097620_100000042 3300006931 Bacteria 158982
41 Ga0099794_10004089 3300007265 Bacteria 5676
42 Ga0105240_10080294 3300009093 Bacteria 4012
43 Ga0105247_10000041 3300009101 Bacteria 158571
44 Ga0105247_10002489 3300009101 Bacteria 12520
45 Ga0114129_10061352 3300009147 Bacteria 5254
46 Ga0105248_10000153 3300009177 Bacteria 80607
47 Ga0105248_10000195 3300009177 Bacteria 70232
48 Ga0105248_10005313 3300009177 Bacteria 14178
49 Ga0157371_10012474 3300013102 Bacteria 6493
50 Ga0157369_10006587 3300013105 Bacteria 13428
51 Ga0157369_10007928 3300013105 Bacteria 12210
52 Ga0157369_10075701 3300013105 Bacteria 3608
53 Ga0157372_10029976 3300013307 Bacteria 5946
54 Ga0163163_10006735 3300014325 Bacteria 10068
55 Ga0157379_10000014 3300014968 Bacteria 105963
56 Ga0157379_10002143 3300014968 Bacteria 16372
57 Ga0213875_10000176 3300021388 Bacteria 67409
58 Ga0224712_10013648 3300022467 Bacteria 2593
59 Ga0207710_10000012 3300025900 Bacteria 409603
60 Ga0207710_10000038 3300025900 Bacteria 241794
61 Ga0207699_10000332 3300025906 Bacteria 25007
62 Ga0207705_10051410 3300025909 Bacteria 2966
63 Ga0207684_10000595 3300025910 Bacteria 43323
64 Ga0207684_10000615 3300025910 Bacteria 42433
65 Ga0207684_10000918 3300025910 Bacteria 33417
66 Ga0207684_10029260 3300025910 Bacteria 4693
67 Ga0207693_10002177 3300025915 Bacteria 17077
68 Ga0207663_10038303 3300025916 Bacteria 2897
69 Ga0207652_10042573 3300025921 Bacteria 3866
70 Ga0207646_10000913 3300025922 Bacteria 38056
71 Ga0207646_10019410 3300025922 Bacteria 6320
72 Ga0207700_10000139 3300025928 Bacteria 43579
73 Ga0207700_10013666 3300025928 Bacteria 5291
74 Ga0207664_10000108 3300025929 Bacteria 72754
75 Ga0207664_10000355 3300025929 Bacteria 33567
76 Ga0207664_10013206 3300025929 Bacteria 5918
77 Ga0207664_10016684 3300025929 Bacteria 5363
78 Ga0207664_10022600 3300025929 Bacteria 4700
79 Ga0207690_10000653 3300025932 Bacteria 22186
80 Ga0207665_10000153 3300025939 Bacteria 46744
81 Ga0207711_10001562 3300025941 Bacteria 21166
82 Ga0207711_10003062 3300025941 Bacteria 14603
83 Ga0207703_10000063 3300026035 Bacteria 127040
84 Ga0207703_10000083 3300026035 Bacteria 110315
85 Ga0207703_10012805 3300026035 Bacteria 6539
86 Ga0207702_10047900 3300026078 Bacteria 3603
87 Ga0207641_10001321 3300026088 Bacteria 24537
88 Ga0268265_10000066 3300028380 Bacteria 142517
89 Ga0265337_1006824 3300028556 Bacteria 4344
90 Ga0265326_10000711 3300028558 Bacteria 12291
91 Ga0265334_10005386 3300028573 Bacteria 5590
92 Ga0265338_10000859 3300028800 Bacteria 51384
93 Ga0265338_10002286 3300028800 Bacteria 29188
94 Ga0265320_10000238 3300031240 Bacteria 45232
95 Ga0265320_10006125 3300031240 Bacteria 7617
96 Ga0316576_10003089 3300031727 Bacteria 9706
97 Ga0316578_10009986 3300031728 Bacteria 4909
98 Ga0316578_10035190 3300031728 Bacteria 2878
99 Ga0307409_100001330 3300031995 Bacteria 11991
100 Ga0373955_0016664 3300035172 Bacteria 3621
101 Ga0316574_0000938 3300035398 Bacteria 13023
102 Ga0373937_0075162 3300036401 Bacteria 3118
103 Ga0316584_0006914 3300036712 Bacteria 7713
104 Ga0373925_0000030 3300037068 Bacteria 146196
105 Ga0373925_0006408 3300037068 Bacteria 8663
106 Ga0395900_0014692 3300037418 Bacteria 7986
107 Ga0395898_0016907 3300037466 Bacteria 7446
108 Ga0395905_0074725 3300037471 Bacteria 3177
109 Ga0436364_0875353 3300037853 Bacteria 55373
110 Ga0395901_0005961 3300038443 Bacteria 12341
111 Ga0395901_0029898 3300038443 Bacteria 5611
112 Ga0400483_062577 3300039062 Bacteria 66463
113 Ga0400483_229655 3300039062 Bacteria 22942
114 Ga0451577_0000141 3300042876 Bacteria 161372
115 Ga0451577_0168571 3300042876 Bacteria 1973
116 Ga0453683_0000007 3300044673 Bacteria 581341
117 Ga0453683_0000580 3300044673 Bacteria 40538
118 Ga0453684_0000463 3300044712 Bacteria 161665
119 Ga0453684_0001850 3300044712 Bacteria 55234
120 Ga0453684_0010286 3300044712 Bacteria 16020
121 Ga0453684_0041602 3300044712 Bacteria 6211
122 Ga0453684_0096372 3300044712 Bacteria 3635
123 Ga0451576_0000155 3300045051 Bacteria 175508
124 Ga0495592_0056878 3300046454 Bacteria 2888
125 Ga0495603_0028784 3300046455 Bacteria 3352
126 Ga0495585_0008272 3300046492 Bacteria 6315
127 Ga0495594_0000219 3300046499 Bacteria 27912
128 Ga0495608_0001749 3300046511 Bacteria 15518
129 Ga0495644_0000041 3300046523 Bacteria 60975
130 Ga0495648_0046814 3300046524 Bacteria 2678
131 Ga0495652_0028611 3300046529 Bacteria 4901
132 Ga0495609_0005607 3300046538 Bacteria 6545
133 Ga0495667_0000427 3300046559 Bacteria 26926
134 Ga0495657_0001402 3300046675 Bacteria 20876
135 Ga0495646_0020154 3300046680 Bacteria 4216
136 Ga0495600_0003697 3300046809 Bacteria 9038
137 Ga0495604_0007425 3300047317 Bacteria 8683
138 Ga0495674_0013036 3300047319 Bacteria 7825
139 Ga0495680_0000660 3300047322 Bacteria 38648
140 Ga0495684_0018212 3300047471 Bacteria 5413
141 Ga0495686_0001533 3300047472 Bacteria 24770
142 Ga0495602_0015422 3300048088 Bacteria 7712
143 Ga0496102_0001140 3300048905 Bacteria 24358
144 Ga0496103_0011640 3300048906 Bacteria 5217
145 Ga0496109_0062773 3300048912 Bacteria 3398
146 Ga0496109_0077774 3300048912 Bacteria 3053
147 Ga0496110_0014376 3300048913 Bacteria 6571
148 Ga0496110_0042086 3300048913 Bacteria 3987
149 Ga0496112_0071618 3300048915 Bacteria 3426
150 Ga0496114_0010648 3300048917 Bacteria 7319
151 Ga0496115_0003169 3300048918 Bacteria 11823
152 Ga0496115_0027746 3300048918 Bacteria 4432
153 Ga0496116_0000150 3300048919 Bacteria 141440
154 Ga0496117_0000060 3300048920 Bacteria 258500
155 Ga0496118_0032144 3300048921 Bacteria 4332
156 Ga0496119_0001709 3300048922 Bacteria 25586
157 Ga0496119_0002359 3300048922 Bacteria 20786
158 Ga0496120_0000340 3300048923 Bacteria 77467
159 Ga0496121_0017690 3300048924 Bacteria 7256
160 Ga0496121_0021082 3300048924 Bacteria 6403
161 Ga0496126_0001168 3300048929 Bacteria 43240
162 Ga0496126_0011235 3300048929 Bacteria 9290
163 Ga0501031_0068281 3300049568 Bacteria 2315
164 Ga0501034_0030618 3300049571 Bacteria 5469
165 Ga0501036_0018271 3300049572 Bacteria 5871
166 Ga0501038_0038484 3300049574 Bacteria 4188
167 Ga0501039_0038284 3300049575 Bacteria 3704
168 Ga0501040_0048845 3300049576 Bacteria 2892
169 Ga0501041_0010195 3300049577 Bacteria 5538
170 Ga0501042_0004632 3300049578 Bacteria 8777
171 Ga0501042_0021780 3300049578 Bacteria 4470
172 Ga0501047_0095721 3300049581 Bacteria 2848
173 Ga0501067_0022383 3300049583 Bacteria 3498
174 Ga0501071_0002901 3300049587 Bacteria 10571
175 Ga0501071_0019246 3300049587 Bacteria 4736
176 Ga0501071_0022386 3300049587 Bacteria 4406
177 Ga0501072_0005965 3300049588 Bacteria 9286
178 Ga0501074_0015168 3300049590 Bacteria 5603
179 Ga0501074_0028204 3300049590 Bacteria 4068
180 Ga0501075_0025082 3300049591 Bacteria 4378
181 Ga0501076_0024092 3300049592 Bacteria 4701
182 Ga0501076_0039503 3300049592 Bacteria 3704
183 Ga0501076_0068366 3300049592 Bacteria 2837
184 Ga0501077_0015581 3300049593 Bacteria 4786
185 Ga0501077_0035394 3300049593 Bacteria 3178
186 Ga0501079_0016887 3300049741 Bacteria 5574
187 Ga0501080_0019495 3300049742 Bacteria 6282
188 Ga0501080_0036946 3300049742 Bacteria 4560
189 Ga0501080_0073315 3300049742 Bacteria 3185
190 Ga0501081_0008985 3300049743 Bacteria 6495
191 Ga0501081_0035220 3300049743 Bacteria 3407
192 Ga0501045_0009780 3300049824 Bacteria 6707
193 Ga0501045_0015543 3300049824 Bacteria 5399
194 nmdc:mga05p37_217508_c1 3300050507 Bacteria 2307
195 nmdc:mga05p37_43789_c1 3300050507 Bacteria 5507
196 Ga0495595_0013625 3300053084 Bacteria 3437
197 Ga0500643_000978 3300053087 Bacteria 17644
198 Ga0501084_0002242 3300054114 Bacteria 15513
199 Ga0501084_0042276 3300054114 Bacteria 3812
200 Ga0501082_0006118 3300060353 Bacteria 10448

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0168571 Ga0451577_0168571_86_1933 581
2 3300005467 Ga0070706_100000867 Ga0070706_10000086721 640
3 3300025910 Ga0207684_10000615 Ga0207684_1000061519 640
4 3300050507 nmdc:mga05p37_217508_c1 nmdc:mga05p37_217508_c1_63_2081 643
5 3300028573 Ga0265334_10005386 Ga0265334_100053863 655
6 3300044712 Ga0453684_0096372 Ga0453684_0096372_1196_3409 673
7 3300005985 Ga0081539_10007844 Ga0081539_100078442 678
8 3300028558 Ga0265326_10000711 Ga0265326_100007115 679
9 3300028800 Ga0265338_10000859 Ga0265338_1000085948 679
10 3300031240 Ga0265320_10000238 Ga0265320_1000023848 679
11 3300049576 Ga0501040_0048845 Ga0501040_0048845_183_2399 680
12 3300049577 Ga0501041_0010195 Ga0501041_0010195_687_2903 680
13 3300049578 Ga0501042_0021780 Ga0501042_0021780_2120_4336 680
14 3300049587 Ga0501071_0022386 Ga0501071_0022386_1943_4159 680
15 3300049588 Ga0501072_0005965 Ga0501072_0005965_6374_8590 680
16 3300049590 Ga0501074_0015168 Ga0501074_0015168_2092_4308 680
17 3300049592 Ga0501076_0039503 Ga0501076_0039503_896_3112 680
18 3300049593 Ga0501077_0015581 Ga0501077_0015581_2533_4749 680
19 3300049741 Ga0501079_0016887 Ga0501079_0016887_2310_4526 680
20 3300049742 Ga0501080_0036946 Ga0501080_0036946_2187_4403 680
21 3300049743 Ga0501081_0008985 Ga0501081_0008985_3480_5696 680
22 3300049824 Ga0501045_0015543 Ga0501045_0015543_2805_5021 680
23 3300054114 Ga0501084_0042276 Ga0501084_0042276_1031_3247 680
24 3300060353 Ga0501082_0006118 Ga0501082_0006118_2120_4336 680
25 3300045051 Ga0451576_0000155 Ga0451576_0000155_116676_118847 681
26 3300048915 Ga0496112_0071618 Ga0496112_0071618_658_3033 682
27 3300014968 Ga0157379_10002143 Ga0157379_100021432 686
28 3300039062 Ga0400483_062577 Ga0400483_062577_61425_63677 690
29 3300039062 Ga0400483_229655 Ga0400483_229655_6931_9183 690
30 3300044673 Ga0453683_0000007 Ga0453683_0000007_141937_144150 690
31 3300044712 Ga0453684_0001850 Ga0453684_0001850_4405_6618 690
32 3300048913 Ga0496110_0014376 Ga0496110_0014376_4096_6270 690
33 3300048918 Ga0496115_0027746 Ga0496115_0027746_377_2551 690
34 3300009101 Ga0105247_10002489 Ga0105247_100024894 691
35 3300048924 Ga0496121_0021082 Ga0496121_0021082_11_2308 691
36 3300046454 Ga0495592_0056878 Ga0495592_0056878_287_2449 692
37 3300046455 Ga0495603_0028784 Ga0495603_0028784_148_2424 693
38 3300046492 Ga0495585_0008272 Ga0495585_0008272_497_2773 693
39 3300046499 Ga0495594_0000219 Ga0495594_0000219_698_2974 693
40 3300046523 Ga0495644_0000041 Ga0495644_0000041_19891_22167 693
41 3300046538 Ga0495609_0005607 Ga0495609_0005607_4241_6517 693
42 iso_pu_bacteria 2506783011 2506867096 693
43 iso_pu_bacteria 2684623036 2686544918 693
44 iso_pu_bacteria 2687453737 2689962683 693
45 3300005445 Ga0070708_100003372 Ga0070708_10000337213 694
46 3300005467 Ga0070706_100004922 Ga0070706_10000492210 694
47 3300005468 Ga0070707_100013518 Ga0070707_1000135185 694
48 3300025910 Ga0207684_10000595 Ga0207684_1000059543 694
49 3300013102 Ga0157371_10012474 Ga0157371_100124745 695
50 3300005445 Ga0070708_100002356 Ga0070708_1000023567 696
51 3300028556 Ga0265337_1006824 Ga0265337_10068241 696
52 3300031240 Ga0265320_10006125 Ga0265320_100061252 696
53 3300035172 Ga0373955_0016664 Ga0373955_0016664_520_2676 696
54 3300036401 Ga0373937_0075162 Ga0373937_0075162_213_2369 696
55 3300046511 Ga0495608_0001749 Ga0495608_0001749_6625_8781 696
56 3300046529 Ga0495652_0028611 Ga0495652_0028611_182_2338 696
57 3300046559 Ga0495667_0000427 Ga0495667_0000427_2935_5091 696
58 3300046675 Ga0495657_0001402 Ga0495657_0001402_11952_14108 696
59 3300046680 Ga0495646_0020154 Ga0495646_0020154_775_2931 696
60 3300046809 Ga0495600_0003697 Ga0495600_0003697_6670_8826 696
61 3300047317 Ga0495604_0007425 Ga0495604_0007425_4729_6885 696
62 3300047322 Ga0495680_0000660 Ga0495680_0000660_5649_7805 696
63 3300047471 Ga0495684_0018212 Ga0495684_0018212_3008_5164 696
64 3300047472 Ga0495686_0001533 Ga0495686_0001533_3451_5922 696
65 3300053084 Ga0495595_0013625 Ga0495595_0013625_930_3089 696
66 3300007265 Ga0099794_10004089 Ga0099794_100040892 697
67 3300046524 Ga0495648_0046814 Ga0495648_0046814_82_2253 697
68 3300048088 Ga0495602_0015422 Ga0495602_0015422_5053_7272 697
69 3300048918 Ga0496115_0003169 Ga0496115_0003169_1202_3427 697
70 3300053087 Ga0500643_000978 Ga0500643_000978_4921_7329 697
71 3300049568 Ga0501031_0068281 Ga0501031_0068281_60_2273 698
72 3300049572 Ga0501036_0018271 Ga0501036_0018271_2711_4924 698
73 3300049574 Ga0501038_0038484 Ga0501038_0038484_1364_3577 698
74 3300049575 Ga0501039_0038284 Ga0501039_0038284_511_2724 698
75 3300049578 Ga0501042_0004632 Ga0501042_0004632_1051_3264 698
76 3300049583 Ga0501067_0022383 Ga0501067_0022383_223_2436 698
77 3300049587 Ga0501071_0002901 Ga0501071_0002901_213_2426 698
78 3300049587 Ga0501071_0019246 Ga0501071_0019246_2476_4689 698
79 3300049590 Ga0501074_0028204 Ga0501074_0028204_638_2851 698
80 3300049591 Ga0501075_0025082 Ga0501075_0025082_460_2673 698
81 3300049592 Ga0501076_0024092 Ga0501076_0024092_765_2978 698
82 3300049592 Ga0501076_0068366 Ga0501076_0068366_353_2566 698
83 3300049593 Ga0501077_0035394 Ga0501077_0035394_423_2636 698
84 3300049742 Ga0501080_0019495 Ga0501080_0019495_288_2501 698
85 3300049742 Ga0501080_0073315 Ga0501080_0073315_78_2291 698
86 3300049743 Ga0501081_0035220 Ga0501081_0035220_105_2318 698
87 3300049824 Ga0501045_0009780 Ga0501045_0009780_1737_3950 698
88 3300005445 Ga0070708_100103353 Ga0070708_1001033531 699
89 3300005468 Ga0070707_100004689 Ga0070707_1000046893 699
90 3300005468 Ga0070707_100039900 Ga0070707_1000399002 699
91 3300025922 Ga0207646_10019410 Ga0207646_100194102 699
92 3300005468 Ga0070707_100012449 Ga0070707_1000124493 700
93 3300005471 Ga0070698_100029303 Ga0070698_1000293034 700
94 3300025910 Ga0207684_10000918 Ga0207684_100009188 700
95 3300025922 Ga0207646_10000913 Ga0207646_1000091315 700
96 3300025929 Ga0207664_10022600 Ga0207664_100226003 700
97 3300048929 Ga0496126_0011235 Ga0496126_0011235_3746_5977 700
98 3300050507 nmdc:mga05p37_43789_c1 nmdc:mga05p37_43789_c1_2826_5072 700
99 iso_pu_bacteria 2939615513 2939616608 700
100 3300035398 Ga0316574_0000938 Ga0316574_0000938_6946_9180 701
101 3300044712 Ga0453684_0010286 Ga0453684_0010286_7437_9650 701
102 3300044712 Ga0453684_0041602 Ga0453684_0041602_592_2805 701
103 3300048917 Ga0496114_0010648 Ga0496114_0010648_2035_4236 701
104 3300022467 Ga0224712_10013648 Ga0224712_100136481 702
105 3300026078 Ga0207702_10047900 Ga0207702_100479003 702
106 3300048920 Ga0496117_0000060 Ga0496117_0000060_174459_176681 702
107 3300005434 Ga0070709_10000283 Ga0070709_1000028329 703
108 3300005435 Ga0070714_100000403 Ga0070714_1000004035 703
109 3300005436 Ga0070713_100004912 Ga0070713_1000049123 703
110 3300005437 Ga0070710_10000160 Ga0070710_100001603 703
111 3300021388 Ga0213875_10000176 Ga0213875_1000017621 703
112 3300037853 Ga0436364_0875353 Ga0436364_0875353_13186_15375 703
113 3300005530 Ga0070679_100103022 Ga0070679_1001030221 704
114 3300013105 Ga0157369_10075701 Ga0157369_100757013 704
115 3300028800 Ga0265338_10002286 Ga0265338_1000228625 704
116 3300037068 Ga0373925_0000030 Ga0373925_0000030_72749_74989 704
117 3300005842 Ga0068858_100000036 Ga0068858_1000000362 705
118 3300025900 Ga0207710_10000012 Ga0207710_10000012149 705
119 3300026035 Ga0207703_10000063 Ga0207703_10000063106 705
120 3300038443 Ga0395901_0029898 Ga0395901_0029898_1351_3822 705
121 3300009147 Ga0114129_10061352 Ga0114129_100613524 706
122 3300031728 Ga0316578_10009986 Ga0316578_100099863 706
123 3300042876 Ga0451577_0000141 Ga0451577_0000141_122094_124334 708
124 3300044673 Ga0453683_0000580 Ga0453683_0000580_11926_14166 708
125 3300044712 Ga0453684_0000463 Ga0453684_0000463_37344_39584 708
126 3300009177 Ga0105248_10005313 Ga0105248_1000531313 713
127 3300048929 Ga0496126_0001168 Ga0496126_0001168_30171_32588 715
128 3300031727 Ga0316576_10003089 Ga0316576_100030893 716
129 3300031728 Ga0316578_10035190 Ga0316578_100351902 716
130 3300036712 Ga0316584_0006914 Ga0316584_0006914_560_2833 716
131 3300048913 Ga0496110_0042086 Ga0496110_0042086_1012_3279 716
132 3300049571 Ga0501034_0030618 Ga0501034_0030618_2753_5002 716
133 iso_pu_bacteria 2554235227 2555229947 716
134 iso_pu_bacteria 2654587600 2655032651 716
135 3300005471 Ga0070698_100015888 Ga0070698_1000158885 717
136 3300009101 Ga0105247_10000041 Ga0105247_1000004183 717
137 3300009177 Ga0105248_10000153 Ga0105248_1000015346 717
138 3300013105 Ga0157369_10007928 Ga0157369_100079282 717
139 3300014325 Ga0163163_10006735 Ga0163163_100067357 717
140 3300025900 Ga0207710_10000038 Ga0207710_10000038103 717
141 3300025941 Ga0207711_10003062 Ga0207711_1000306213 717
142 3300048921 Ga0496118_0032144 Ga0496118_0032144_1769_4003 717
143 3300048922 Ga0496119_0001709 Ga0496119_0001709_21073_23394 717
144 3300048923 Ga0496120_0000340 Ga0496120_0000340_49932_52253 717
145 iso_pu_bacteria 2773857933 2774903944 717
146 iso_pu_bacteria 8054920844 8054921193 717
147 3300005458 Ga0070681_10022198 Ga0070681_100221984 718
148 3300006028 Ga0070717_10002215 Ga0070717_100022154 718
149 3300013105 Ga0157369_10006587 Ga0157369_100065878 718
150 iso_pu_bacteria 2739367898 2740169508 718
151 3300049581 Ga0501047_0095721 Ga0501047_0095721_77_2416 719
152 iso_pu_bacteria 2643221690 2644503802 720
153 iso_pu_bacteria 2643221694 2644527128 720
154 iso_pu_bacteria 2643221722 2644670143 720
155 iso_pu_bacteria 2884994152 2884995573 720
156 iso_pu_bacteria 2887443736 2887446472 720
157 3300013307 Ga0157372_10029976 Ga0157372_100299764 721
158 3300037068 Ga0373925_0006408 Ga0373925_0006408_1277_3778 721
159 3300047319 Ga0495674_0013036 Ga0495674_0013036_2004_4391 721
160 3300048905 Ga0496102_0001140 Ga0496102_0001140_14373_16730 721
161 3300048906 Ga0496103_0011640 Ga0496103_0011640_2380_4737 721
162 3300005327 Ga0070658_10056904 Ga0070658_100569042 722
163 3300025909 Ga0207705_10051410 Ga0207705_100514102 722
164 3300037418 Ga0395900_0014692 Ga0395900_0014692_786_3098 722
165 3300037466 Ga0395898_0016907 Ga0395898_0016907_2992_5304 722
166 3300037471 Ga0395905_0074725 Ga0395905_0074725_305_2758 722
167 3300038443 Ga0395901_0005961 Ga0395901_0005961_6064_8517 722
168 3300048912 Ga0496109_0062773 Ga0496109_0062773_446_2908 722
169 3300048912 Ga0496109_0077774 Ga0496109_0077774_443_2962 722
170 3300048924 Ga0496121_0017690 Ga0496121_0017690_1870_4272 722
171 iso_pu_bacteria 2643221567 2643849972 722
172 iso_pu_bacteria 2643221624 2644135974 722
173 iso_pu_bacteria 2643221631 2644174060 722
174 3300005366 Ga0070659_100000127 Ga0070659_1000001278 723
175 3300025932 Ga0207690_10000653 Ga0207690_1000065314 723
176 3300031995 Ga0307409_100001330 Ga0307409_10000133011 723
177 3300054114 Ga0501084_0002242 Ga0501084_0002242_3715_6027 723
178 iso_pu_bacteria 2808606365 2808874182 723
179 iso_pu_bacteria 2818991472 2819739100 724
180 3300025928 Ga0207700_10013666 Ga0207700_100136663 727
181 3300025929 Ga0207664_10013206 Ga0207664_100132063 727
182 3300048919 Ga0496116_0000150 Ga0496116_0000150_118600_121260 729
183 3300005458 Ga0070681_10009958 Ga0070681_100099585 730
184 3300005937 Ga0081455_10000115 Ga0081455_100001154 730
185 3300006028 Ga0070717_10005279 Ga0070717_100052796 730
186 3300006173 Ga0070716_100001026 Ga0070716_1000010266 730
187 3300006175 Ga0070712_100001077 Ga0070712_1000010776 730
188 3300025906 Ga0207699_10000332 Ga0207699_100003323 730
189 3300025915 Ga0207693_10002177 Ga0207693_100021779 730
190 3300025921 Ga0207652_10042573 Ga0207652_100425732 730
191 3300025928 Ga0207700_10000139 Ga0207700_1000013940 730
192 3300025929 Ga0207664_10000108 Ga0207664_1000010829 730
193 3300025939 Ga0207665_10000153 Ga0207665_100001536 730
194 3300005435 Ga0070714_100001584 Ga0070714_10000158412 731
195 3300005842 Ga0068858_100000068 Ga0068858_10000006879 731
196 3300009177 Ga0105248_10000195 Ga0105248_1000019521 731
197 3300014968 Ga0157379_10000014 Ga0157379_1000001426 731
198 3300025929 Ga0207664_10016684 Ga0207664_100166841 731
199 3300026035 Ga0207703_10000083 Ga0207703_1000008326 731
200 3300005467 Ga0070706_100007629 Ga0070706_1000076294 732
201 3300005471 Ga0070698_100003847 Ga0070698_1000038476 732
202 3300006028 Ga0070717_10024113 Ga0070717_100241132 732
203 3300025910 Ga0207684_10029260 Ga0207684_100292603 732
204 3300025941 Ga0207711_10001562 Ga0207711_1000156216 732
205 iso_pu_bacteria 8055157932 8055162909 732
206 iso_pu_bacteria 8054913762 8054916467 733
207 3300005617 Ga0068859_100000042 Ga0068859_100000042102 734
208 3300005841 Ga0068863_100001046 Ga0068863_1000010462 734
209 3300005842 Ga0068858_100002449 Ga0068858_10000244916 734
210 3300005844 Ga0068862_100000623 Ga0068862_10000062319 734
211 3300006931 Ga0097620_100000042 Ga0097620_100000042102 734
212 3300026035 Ga0207703_10012805 Ga0207703_100128052 734
213 3300026088 Ga0207641_10001321 Ga0207641_100013216 734
214 3300028380 Ga0268265_10000066 Ga0268265_1000006690 734
215 iso_pu_bacteria 2626541554 2626638396 734
216 3300009093 Ga0105240_10080294 Ga0105240_100802941 735
217 3300025929 Ga0207664_10000355 Ga0207664_1000035517 735
218 3300048922 Ga0496119_0002359 Ga0496119_0002359_11451_14111 735
219 iso_pu_bacteria 2684623035 2686536036 735
220 iso_pu_bacteria 2895880812 2895887237 735
221 3300005327 Ga0070658_10019809 Ga0070658_100198094 736
222 iso_pu_bacteria 2508501039 2508675790 736
223 iso_pu_bacteria 2517572101 2517763865 736
224 iso_pu_bacteria 2527291627 2528203195 736
225 iso_pu_bacteria 2527291629 2528213042 736
226 iso_pu_bacteria 2546825537 2546949258 736
227 iso_pu_bacteria 2576861822 2579748038 736
228 iso_pu_bacteria 2579778521 2579852872 736
229 iso_pu_bacteria 2619618881 2619854046 736
230 iso_pu_bacteria 2619619003 2620348978 736
231 iso_pu_bacteria 2671180195 2671832904 736
232 iso_pu_bacteria 2675902999 2676200903 736
233 iso_pu_bacteria 2687453743 2689991114 736
234 iso_pu_bacteria 2710264753 2710602031 736
235 iso_pu_bacteria 2773857921 2774845481 736
236 iso_pu_bacteria 2773857922 2774851060 736
237 iso_pu_bacteria 2773857924 2774863523 736
238 iso_pu_bacteria 3002998708 3003002167 736
239 iso_pu_bacteria 637000116 637878713 736
240 iso_pu_bacteria 8002775197 8002777709 736
241 iso_pu_bacteria 8002784119 8002790073 736
242 3300025916 Ga0207663_10038303 Ga0207663_100383032 737
243 iso_pu_bacteria 2622736605 2623500231 738
244 iso_pu_bacteria 8053945823 8053947921 738
245 3300005436 Ga0070713_100003491 Ga0070713_10000349110 739
246 3300005327 Ga0070658_10005895 Ga0070658_100058955 740

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04607

RelA_SpoT

Region found in RelA / SpoT proteins

391

502

0.99

PF02824

TGS

TGS domain

562

621

0.98

PF13328

HD_4

HD domain

184

332

0.98

PF01842

ACT

ACT domain

822

888

0.97

PF13291

ACT_4

ACT domain

816

894

0.97

PF19296

RelA_AH_RIS

RelA/SpoT, AH and RIS domains

635

798

0.81

PF01966

HD

HD domain

203

300

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hvz-assembly3.cif.gz_E crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a 0.9916 415 476
3hvz-assembly3.cif.gz_E crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a 0.9761 415 476
7oiw-assembly1.cif.gz_A structure of s. aureus rel catalytic domains in complex with pppgpp 0.952 42 372
7oiw-assembly2.cif.gz_B structure of s. aureus rel catalytic domains in complex with pppgpp 0.9415 42 372
7oiw-assembly1.cif.gz_A structure of s. aureus rel catalytic domains in complex with pppgpp 0.935 42 372
ID Description Score Start End Superfamily
af_P0AG24_192_325_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9821 225 358 3.30.460.10
3hvzC00 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9804 415 477 3.10.20.30
af_P0AG24_192_325_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9749 225 358 3.30.460.10
af_P0AG20_208_341_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9635 225 358 3.30.460.10
af_P0AG24_2_190_1.10.3210.10 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.9595 38 223 1.10.3210.10
ID Description Score Start End GO Terms
AF-A0A535STX3-F1-model_v4 Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase 0.9841 58 351 GO:0005886
GO:0015969
GO:0016787
AF-A0A661X1T4-F1-model_v4 HD domain-containing protein 0.9822 38 300 GO:0005886
GO:0015969
AF-A0A6L8JM59-F1-model_v4 deleted 0.982 39 328
AF-A0A847WCF3-F1-model_v4 Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase 0.9814 38 120 GO:0016787
AF-A0A7K0N1T4-F1-model_v4 HD domain-containing protein 0.9785 36 243 GO:0005886

Feature Viewer

pLDDT pTM Quality
76.1 0.51 Medium
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Predicted Structure (AlphaFold2)

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