F355999

General Info

Members Datasets Scaffolds Average Seq Length
243 154 230 320

Family's Representative Sequence

Representative Sequence 3300049588|Ga0501072_0057145|Ga0501072_0057145_1122_2189
Length 355
Sequence VDENAPRDNHARICKHRIALVRRQSQEPETMMAKPALLMTGPMMPLIENGCDAAFIVHRLHKTADREALLRTVAPEIRAICTGGHTGVKTDDAFMARFPNLRIVGNFGVGYDSVDAAAAARRGVVVTNTPDVLTEEVADTTLGLLLATVREFYWAEKWLRDGRWAREGDYRLTSGSLRDRSAGIAGLGRIGKAIARRLEAFGVPVSYFGRSRQPGVAYRHYSDLVALARDVDTLIVVTPGGPATQNLIDAAVLEALGPRGILINVSRGSVVDEAALIDALKNRTILAAGLDVFAGEPGINPALLELDNLTMFPHVGSASVHTRNAMGQLVVDNLAAFAVGKPPLTPVAETPFKGW

Samples

Sample ID Description Type Environment
1 2643221734 Bosea sp. Root670 Isolate Unclassified
2 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
3 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
4 2841917233 Bosea caraganae RCAM04680 Isolate Nodule
5 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
6 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
7 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
8 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
9 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
10 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
11 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
28 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
29 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
30 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
40 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
41 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
42 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
55 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
57 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
58 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
59 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
60 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
61 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
66 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
67 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
68 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
69 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
75 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
78 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
79 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
80 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
86 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
87 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
88 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
89 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
90 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
91 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
92 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
93 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
94 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
95 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
98 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
99 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
103 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
119 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
120 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
121 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
122 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
123 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
127 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
130 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
134 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
135 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
136 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
137 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
138 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
139 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
140 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
141 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
142 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
143 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
144 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
145 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
146 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
147 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
148 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
149 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
150 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
151 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
152 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
153 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
154 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.65
Metatranscriptomes 0
Isolates 5.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.87
Nodule 1.23
Rhizoplane 3.7
Rhizosphere 70.78
Stem 0
Stem Tuber 0
Unclassified 7.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000052 3300003187 Bacteria 159471
2 Ga0055524_1000014 3300003775 Bacteria 259417
3 Ga0070675_100401317 3300005354 Bacteria 1223
4 Ga0070671_100002411 3300005355 Bacteria 14452
5 Ga0070671_100345139 3300005355 Bacteria 1270
6 Ga0070673_100198224 3300005364 Bacteria 1728
7 Ga0070709_10119512 3300005434 Bacteria 1784
8 Ga0070714_100022011 3300005435 Bacteria 5223
9 Ga0070714_100056719 3300005435 Bacteria 3351
10 Ga0070711_100416415 3300005439 Bacteria 1094
11 Ga0070665_100002164 3300005548 Bacteria 21915
12 Ga0068861_100050150 3300005719 Bacteria 3164
13 Ga0068861_100272086 3300005719 Bacteria 1455
14 Ga0068862_100040875 3300005844 Bacteria 3944
15 Ga0081455_10000028 3300005937 Bacteria 155778
16 Ga0081539_10026648 3300005985 Bacteria 3682
17 Ga0075365_10003123 3300006038 Bacteria 8432
18 Ga0075365_10020005 3300006038 Bacteria 4142
19 Ga0075365_10035715 3300006038 Bacteria 3217
20 Ga0075368_10001152 3300006042 Bacteria 8340
21 Ga0075364_10005001 3300006051 Bacteria 7690
22 Ga0075364_10008822 3300006051 Bacteria 6035
23 Ga0075364_10011359 3300006051 Bacteria 5409
24 Ga0075364_10043239 3300006051 Bacteria 2929
25 Ga0070712_100013591 3300006175 Bacteria 5206
26 Ga0075362_10014029 3300006177 Bacteria 3224
27 Ga0075367_10005938 3300006178 Bacteria 6126
28 Ga0075367_10009341 3300006178 Bacteria 5122
29 Ga0075367_10011402 3300006178 Bacteria 4701
30 Ga0075367_10033468 3300006178 Bacteria 2963
31 Ga0075366_10022324 3300006195 Bacteria 3680
32 Ga0075366_10032006 3300006195 Bacteria 3096
33 Ga0075366_10117017 3300006195 Bacteria 1605
34 Ga0075370_10038517 3300006353 Bacteria 2690
35 Ga0075428_100014020 3300006844 Bacteria 8921
36 Ga0075430_100090281 3300006846 Bacteria 2563
37 Ga0075431_100025629 3300006847 Bacteria 6045
38 Ga0075431_100176944 3300006847 Bacteria 2191
39 Ga0075434_100004034 3300006871 Bacteria 13165
40 Ga0075429_100113604 3300006880 Bacteria 2367
41 Ga0075429_100192611 3300006880 Bacteria 1786
42 Ga0075435_100053707 3300007076 Bacteria 3250
43 Ga0111539_10085751 3300009094 Bacteria 3701
44 Ga0111539_10230156 3300009094 Bacteria 2158
45 Ga0114129_10039705 3300009147 Bacteria 6637
46 Ga0114129_10316250 3300009147 Bacteria 2076
47 Ga0171462_1012 3300013250 Bacteria 208216
48 Ga0213872_10004902 3300021361 Bacteria 6975
49 Ga0213872_10007360 3300021361 Bacteria 5429
50 Ga0213874_10015343 3300021377 Bacteria 2019
51 Ga0209673_1022131 3300025273 Bacteria 2201
52 Ga0209675_1001679 3300025291 Bacteria 12302
53 Ga0209025_1000017 3300025294 Bacteria 768983
54 Ga0209025_1026162 3300025294 Bacteria 2939
55 Ga0209564_1000082 3300025295 Bacteria 261494
56 Ga0209256_1000033 3300025299 Bacteria 393924
57 Ga0207685_10011662 3300025905 Bacteria 2651
58 Ga0207699_10272206 3300025906 Bacteria 1174
59 Ga0207693_10003287 3300025915 Bacteria 13840
60 Ga0207664_10008048 3300025929 Bacteria 7329
61 Ga0207644_10000446 3300025931 Bacteria 26672
62 Ga0207665_10322249 3300025939 Bacteria 1160
63 Ga0207675_100072045 3300026118 Bacteria 3231
64 Ga0207675_100156317 3300026118 Bacteria 2173
65 Ga0209813_10006845 3300027866 Bacteria 2827
66 Ga0268266_10001459 3300028379 Bacteria 28148
67 Ga0265326_10026112 3300028558 Bacteria 1666
68 Ga0265319_1015823 3300028563 Bacteria 2909
69 Ga0265334_10000148 3300028573 Bacteria 43717
70 Ga0265330_10003931 3300031235 Bacteria 7637
71 Ga0265320_10013670 3300031240 Bacteria 4655
72 Ga0265331_10006906 3300031250 Bacteria 6629
73 Ga0265316_10020350 3300031344 Bacteria 5650
74 Ga0307513_10021029 3300031456 Bacteria 7713
75 Ga0265314_10014215 3300031711 Bacteria 6383
76 Ga0265342_10007081 3300031712 Bacteria 8264
77 Ga0307516_10000010 3300031730 Bacteria 229720
78 Ga0307516_10153593 3300031730 Bacteria 2060
79 Ga0307510_10001841 3300033180 Bacteria 23760
80 Ga0373962_0009414 3300035242 Bacteria 2421
81 Ga0373931_0015375 3300035691 Bacteria 3753
82 Ga0373925_0088368 3300037068 Bacteria 2367
83 Ga0395900_0016592 3300037418 Bacteria 7511
84 Ga0395900_0098195 3300037418 Bacteria 3009
85 Ga0395898_0025505 3300037466 Bacteria 5956
86 Ga0395905_0000065 3300037471 Bacteria 184928
87 Ga0395905_0160776 3300037471 Bacteria 2111
88 Ga0395905_0393426 3300037471 Bacteria 1280
89 Ga0436364_0824670 3300037853 Bacteria 1102
90 Ga0436364_1148995 3300037853 Bacteria 1262
91 Ga0436360_0132195 3300039438 Bacteria 4166
92 Ga0436360_0304134 3300039438 Bacteria 3352
93 Ga0436361_0021397 3300039447 Bacteria 46447
94 Ga0436361_0189887 3300039447 Bacteria 1776
95 Ga0436361_0485398 3300039447 Bacteria 8299
96 Ga0436363_0326013 3300039450 Bacteria 2351
97 Ga0436362_0073172 3300039453 Bacteria 6338
98 Ga0450888_011956 3300042126 Bacteria 1024
99 Ga0466969_0003416 3300044656 Bacteria 8445
100 Ga0466961_0002816 3300044693 Bacteria 10820
101 Ga0466970_0077047 3300044765 Bacteria 1797
102 Ga0466957_0178255 3300044842 Bacteria 1387
103 Ga0466959_0000686 3300045049 Bacteria 19811
104 Ga0495580_0031317 3300046472 Bacteria 3844
105 Ga0495594_0063131 3300046499 Bacteria 2052
106 Ga0495583_0002688 3300046506 Bacteria 14780
107 Ga0495643_0041827 3300046522 Bacteria 2498
108 Ga0495597_0000572 3300046542 Bacteria 30608
109 Ga0495668_0027259 3300046616 Bacteria 3238
110 Ga0495625_0019107 3300046660 Bacteria 5330
111 Ga0495604_0043413 3300047317 Bacteria 3519
112 Ga0495677_0001641 3300047445 Bacteria 8992
113 Ga0495686_0140514 3300047472 Bacteria 1425
114 Ga0495626_0002910 3300048091 Bacteria 11405
115 Ga0496104_0004706 3300048907 Bacteria 11885
116 Ga0496104_0111512 3300048907 Bacteria 2623
117 Ga0496105_0034629 3300048908 Bacteria 4154
118 Ga0496107_0006383 3300048910 Bacteria 8104
119 Ga0496108_0001594 3300048911 Bacteria 17977
120 Ga0496109_0013014 3300048912 Bacteria 7195
121 Ga0496110_0000284 3300048913 Bacteria 33124
122 Ga0496111_0097297 3300048914 Bacteria 2160
123 Ga0496112_0128640 3300048915 Bacteria 2503
124 Ga0496121_0019969 3300048924 Bacteria 6666
125 Ga0496121_0025942 3300048924 Bacteria 5543
126 Ga0496123_0040278 3300048926 Bacteria 3256
127 Ga0496126_0070494 3300048929 Bacteria 3114
128 Ga0501031_0189285 3300049568 Bacteria 1344
129 Ga0501032_0033178 3300049569 Bacteria 3538
130 Ga0501032_0088794 3300049569 Bacteria 2052
131 Ga0501032_0124985 3300049569 Bacteria 1699
132 Ga0501032_0195078 3300049569 Bacteria 1323
133 Ga0501033_0001367 3300049570 Bacteria 21762
134 Ga0501033_0023557 3300049570 Bacteria 4643
135 Ga0501033_0072169 3300049570 Bacteria 2535
136 Ga0501033_0124356 3300049570 Bacteria 1870
137 Ga0501034_0109522 3300049571 Bacteria 2753
138 Ga0501036_0008637 3300049572 Bacteria 8357
139 Ga0501036_0103944 3300049572 Bacteria 2402
140 Ga0501037_0000895 3300049573 Bacteria 22218
141 Ga0501037_0047932 3300049573 Bacteria 3131
142 Ga0501038_0061469 3300049574 Bacteria 3212
143 Ga0501038_0170089 3300049574 Bacteria 1765
144 Ga0501042_0040418 3300049578 Bacteria 3316
145 Ga0501043_0000045 3300049579 Bacteria 114003
146 Ga0501043_0065934 3300049579 Bacteria 2843
147 Ga0501043_0145390 3300049579 Bacteria 1857
148 Ga0501043_0203525 3300049579 Bacteria 1536
149 Ga0501046_0033914 3300049580 Bacteria 4123
150 Ga0501046_0361713 3300049580 Bacteria 1052
151 Ga0501047_0017854 3300049581 Bacteria 6797
152 Ga0501047_0057532 3300049581 Bacteria 3759
153 Ga0501047_0080920 3300049581 Bacteria 3123
154 Ga0501047_0082057 3300049581 Bacteria 3099
155 Ga0501047_0210362 3300049581 Bacteria 1804
156 Ga0501067_0022431 3300049583 Bacteria 3494
157 Ga0501068_0008469 3300049584 Bacteria 5724
158 Ga0501069_0000007 3300049585 Bacteria 182820
159 Ga0501069_0064071 3300049585 Bacteria 2054
160 Ga0501069_0103231 3300049585 Bacteria 1619
161 Ga0501070_0000758 3300049586 Bacteria 29461
162 Ga0501070_0001581 3300049586 Bacteria 20248
163 Ga0501070_0003344 3300049586 Bacteria 13925
164 Ga0501070_0029624 3300049586 Bacteria 4588
165 Ga0501070_0070098 3300049586 Bacteria 2903
166 Ga0501070_0132444 3300049586 Bacteria 2059
167 Ga0501071_0013377 3300049587 Bacteria 5590
168 Ga0501071_0045205 3300049587 Bacteria 3161
169 Ga0501071_0046801 3300049587 Bacteria 3107
170 Ga0501072_0057145 3300049588 Bacteria 3075
171 Ga0501073_0009535 3300049589 Bacteria 7164
172 Ga0501073_0109098 3300049589 Bacteria 1920
173 Ga0501073_0139441 3300049589 Bacteria 1680
174 Ga0501073_0245762 3300049589 Bacteria 1235
175 Ga0501074_0000047 3300049590 Bacteria 57039
176 Ga0501075_0023581 3300049591 Bacteria 4507
177 Ga0501075_0027128 3300049591 Bacteria 4220
178 Ga0501079_0085595 3300049741 Bacteria 2440
179 Ga0501079_0305213 3300049741 Bacteria 1245
180 Ga0501080_0005487 3300049742 Bacteria 11319
181 Ga0501080_0009780 3300049742 Bacteria 8760
182 Ga0501080_0042890 3300049742 Bacteria 4212
183 Ga0501081_0027400 3300049743 Bacteria 3844
184 Ga0501083_0002704 3300049744 Bacteria 12233
185 Ga0501083_0092087 3300049744 Bacteria 2001
186 Ga0501035_0000060 3300049822 Bacteria 132293
187 Ga0501035_0001302 3300049822 Bacteria 25776
188 Ga0501035_0001528 3300049822 Bacteria 23579
189 Ga0501035_0075439 3300049822 Bacteria 2982
190 Ga0501035_0081112 3300049822 Bacteria 2863
191 Ga0501035_0110406 3300049822 Bacteria 2410
192 Ga0501044_0000009 3300049823 Bacteria 270072
193 Ga0501044_0030532 3300049823 Bacteria 5679
194 Ga0501044_0031834 3300049823 Bacteria 5547
195 Ga0501044_0046486 3300049823 Bacteria 4493
196 Ga0501044_0067123 3300049823 Bacteria 3655
197 Ga0501044_0622483 3300049823 Bacteria 971
198 Ga0501045_0044953 3300049824 Bacteria 3216
199 Ga0501045_0085765 3300049824 Bacteria 2324
200 Ga0501045_0140728 3300049824 Bacteria 1794
201 nmdc:mga03n38_228739_c1 3300050490 Bacteria 974
202 nmdc:mga00v17_12256_c1 3300050491 Bacteria 4729
203 nmdc:mga00v17_46235_c1 3300050491 Unclassified 2633
204 nmdc:mga0yw44_31276_c1 3300050492 Bacteria 3093
205 nmdc:mga0yw44_61434_c1 3300050492 Bacteria 2305
206 nmdc:mga0yw44_93733_c1 3300050492 Bacteria 1902
207 nmdc:mga06z11_122956_c1 3300050494 Bacteria 1450
208 nmdc:mga06z11_515_c1 3300050494 Bacteria 14263
209 nmdc:mga06z11_55962_c1 3300050494 Bacteria 2039
210 nmdc:mga06z11_5972_c1 3300050494 Bacteria 4921
211 nmdc:mga04h51_14729_c1 3300050495 Bacteria 2241
212 nmdc:mga0qj67_21851_c1 3300050509 Bacteria 4909
213 nmdc:mga0qj67_91247_c1 3300050509 Bacteria 2448
214 nmdc:mga06r32_1601_c1 3300050510 Bacteria 20404
215 nmdc:mga06r32_5359_c1 3300050510 Bacteria 11543
216 nmdc:mga08y16_311804_c1 3300050511 Bacteria 1620
217 nmdc:mga08y16_400578_c1 3300050511 Bacteria 1405
218 nmdc:mga0n895_11150_c1 3300050512 Bacteria 8000
219 nmdc:mga0rr50_27471_c1 3300050513 Bacteria 3985
220 nmdc:mga0a205_13030_c1 3300050515 Bacteria 7720
221 Ga0500559_0013294 3300053136 Bacteria 3488
222 Ga0500568_0000035 3300053139 Bacteria 137912
223 Ga0500590_001859 3300053148 Bacteria 8971
224 Ga0500616_0057592 3300053153 Bacteria 2024
225 Ga0501082_0035671 3300060353 Bacteria 4286
226 Ga0501082_0109477 3300060353 Bacteria 2391
227 Ga0501082_0197082 3300060353 Bacteria 1752
228 Ga0501082_0345632 3300060353 Bacteria 1296
229 Ga0530510_0005989 3300061734 Bacteria 8436
230 Ga0530510_0031202 3300061734 Bacteria 3832

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049569 Ga0501032_0195078 Ga0501032_0195078_436_1272 250
2 3300037853 Ga0436364_0824670 Ga0436364_0824670_297_1076 259
3 3300042126 Ga0450888_011956 Ga0450888_011956_16_849 275
4 3300049580 Ga0501046_0361713 Ga0501046_0361713_34_891 284
5 3300021377 Ga0213874_10015343 Ga0213874_100153432 299
6 3300037853 Ga0436364_1148995 Ga0436364_1148995_80_1018 299
7 3300039450 Ga0436363_0326013 Ga0436363_0326013_165_1103 299
8 3300053153 Ga0500616_0057592 Ga0500616_0057592_907_1848 304
9 3300048091 Ga0495626_0002910 Ga0495626_0002910_8027_8947 305
10 3300049569 Ga0501032_0033178 Ga0501032_0033178_1281_2252 307
11 3300049570 Ga0501033_0001367 Ga0501033_0001367_19550_20521 307
12 3300049570 Ga0501033_0072169 Ga0501033_0072169_337_1350 307
13 3300049571 Ga0501034_0109522 Ga0501034_0109522_1567_2580 307
14 3300049573 Ga0501037_0000895 Ga0501037_0000895_3126_4097 307
15 3300049579 Ga0501043_0000045 Ga0501043_0000045_1903_2874 307
16 3300049579 Ga0501043_0065934 Ga0501043_0065934_1769_2782 307
17 3300049581 Ga0501047_0080920 Ga0501047_0080920_392_1363 307
18 3300049584 Ga0501068_0008469 Ga0501068_0008469_2762_3733 307
19 3300049585 Ga0501069_0000007 Ga0501069_0000007_161129_162100 307
20 3300049586 Ga0501070_0000758 Ga0501070_0000758_23125_24096 307
21 3300049586 Ga0501070_0132444 Ga0501070_0132444_132_1145 307
22 3300049587 Ga0501071_0013377 Ga0501071_0013377_293_1264 307
23 3300049589 Ga0501073_0009535 Ga0501073_0009535_532_1503 307
24 3300049590 Ga0501074_0000047 Ga0501074_0000047_13575_14546 307
25 3300049742 Ga0501080_0005487 Ga0501080_0005487_4453_5424 307
26 3300049742 Ga0501080_0042890 Ga0501080_0042890_2725_3738 307
27 3300049744 Ga0501083_0002704 Ga0501083_0002704_8938_9909 307
28 3300049744 Ga0501083_0092087 Ga0501083_0092087_423_1436 307
29 3300049822 Ga0501035_0000060 Ga0501035_0000060_31381_32352 307
30 3300049822 Ga0501035_0075439 Ga0501035_0075439_919_1932 307
31 3300049823 Ga0501044_0000009 Ga0501044_0000009_161113_162084 307
32 3300049823 Ga0501044_0031834 Ga0501044_0031834_933_1946 307
33 3300060353 Ga0501082_0109477 Ga0501082_0109477_336_1307 307
34 3300044842 Ga0466957_0178255 Ga0466957_0178255_415_1374 308
35 3300046542 Ga0495597_0000572 Ga0495597_0000572_17955_18884 308
36 3300006195 Ga0075366_10117017 Ga0075366_101170172 309
37 3300037471 Ga0395905_0000065 Ga0395905_0000065_75240_76172 309
38 3300044656 Ga0466969_0003416 Ga0466969_0003416_3527_4459 309
39 3300044693 Ga0466961_0002816 Ga0466961_0002816_6338_7270 309
40 3300044765 Ga0466970_0077047 Ga0466970_0077047_629_1561 309
41 3300045049 Ga0466959_0000686 Ga0466959_0000686_4060_4992 309
42 3300046522 Ga0495643_0041827 Ga0495643_0041827_1220_2152 309
43 3300050513 nmdc:mga0rr50_27471_c1 nmdc:mga0rr50_27471_c1_2320_3258 309
44 iso_pu_bacteria 2834641062 2834644725 309
45 iso_pu_bacteria 2858688981 2858696629 309
46 iso_pu_bacteria 8003400568 8003403041 309
47 3300005435 Ga0070714_100056719 Ga0070714_1000567191 310
48 3300035242 Ga0373962_0009414 Ga0373962_0009414_1225_2166 310
49 3300035691 Ga0373931_0015375 Ga0373931_0015375_381_1322 310
50 3300039447 Ga0436361_0021397 Ga0436361_0021397_21404_22336 310
51 3300049568 Ga0501031_0189285 Ga0501031_0189285_321_1301 310
52 3300049570 Ga0501033_0023557 Ga0501033_0023557_2936_3916 310
53 3300049574 Ga0501038_0061469 Ga0501038_0061469_83_1063 310
54 3300049579 Ga0501043_0145390 Ga0501043_0145390_294_1274 310
55 3300049581 Ga0501047_0017854 Ga0501047_0017854_5235_6215 310
56 3300049585 Ga0501069_0064071 Ga0501069_0064071_989_1969 310
57 3300049586 Ga0501070_0003344 Ga0501070_0003344_1830_2810 310
58 3300049586 Ga0501070_0029624 Ga0501070_0029624_1418_2362 310
59 3300049589 Ga0501073_0139441 Ga0501073_0139441_81_1061 310
60 3300049742 Ga0501080_0009780 Ga0501080_0009780_4955_5935 310
61 3300049822 Ga0501035_0001302 Ga0501035_0001302_3576_4556 310
62 3300049823 Ga0501044_0030532 Ga0501044_0030532_4141_5121 310
63 3300049823 Ga0501044_0622483 Ga0501044_0622483_13_957 310
64 3300050511 nmdc:mga08y16_400578_c1 nmdc:mga08y16_400578_c1_140_1081 310
65 3300050512 nmdc:mga0n895_11150_c1 nmdc:mga0n895_11150_c1_4244_5185 310
66 3300050515 nmdc:mga0a205_13030_c1 nmdc:mga0a205_13030_c1_4701_5642 310
67 3300053139 Ga0500568_0000035 Ga0500568_0000035_115470_116453 310
68 3300053148 Ga0500590_001859 Ga0500590_001859_5405_6337 310
69 3300037471 Ga0395905_0393426 Ga0395905_0393426_41_1018 311
70 iso_pu_bacteria 2929199973 2929201189 311
71 3300005434 Ga0070709_10119512 Ga0070709_101195121 312
72 3300005985 Ga0081539_10026648 Ga0081539_100266483 312
73 3300025906 Ga0207699_10272206 Ga0207699_102722061 312
74 3300031730 Ga0307516_10000010 Ga0307516_1000001095 312
75 3300039438 Ga0436360_0132195 Ga0436360_0132195_3096_4034 312
76 3300048907 Ga0496104_0111512 Ga0496104_0111512_369_1316 312
77 3300049572 Ga0501036_0008637 Ga0501036_0008637_7215_8153 312
78 3300049579 Ga0501043_0203525 Ga0501043_0203525_17_988 312
79 3300049581 Ga0501047_0210362 Ga0501047_0210362_206_1177 312
80 3300049586 Ga0501070_0070098 Ga0501070_0070098_1353_2324 312
81 3300049591 Ga0501075_0027128 Ga0501075_0027128_2842_3780 312
82 3300049822 Ga0501035_0110406 Ga0501035_0110406_653_1624 312
83 3300049824 Ga0501045_0044953 Ga0501045_0044953_279_1217 312
84 3300021361 Ga0213872_10004902 Ga0213872_100049025 313
85 3300037418 Ga0395900_0016592 Ga0395900_0016592_2182_3165 313
86 3300037418 Ga0395900_0098195 Ga0395900_0098195_1673_2689 313
87 3300037466 Ga0395898_0025505 Ga0395898_0025505_1818_2801 313
88 3300037471 Ga0395905_0160776 Ga0395905_0160776_39_1055 313
89 3300039447 Ga0436361_0485398 Ga0436361_0485398_2432_3376 313
90 3300039453 Ga0436362_0073172 Ga0436362_0073172_1350_2294 313
91 3300046472 Ga0495580_0031317 Ga0495580_0031317_1926_2867 313
92 3300046499 Ga0495594_0063131 Ga0495594_0063131_929_1870 313
93 3300047317 Ga0495604_0043413 Ga0495604_0043413_566_1507 313
94 3300049569 Ga0501032_0124985 Ga0501032_0124985_504_1478 313
95 3300049581 Ga0501047_0057532 Ga0501047_0057532_762_1736 313
96 3300049585 Ga0501069_0103231 Ga0501069_0103231_443_1417 313
97 3300049586 Ga0501070_0001581 Ga0501070_0001581_2068_3042 313
98 3300049587 Ga0501071_0045205 Ga0501071_0045205_942_1916 313
99 3300049589 Ga0501073_0109098 Ga0501073_0109098_368_1342 313
100 3300049822 Ga0501035_0001528 Ga0501035_0001528_815_1789 313
101 3300049823 Ga0501044_0046486 Ga0501044_0046486_2592_3566 313
102 3300021361 Ga0213872_10007360 Ga0213872_100073606 314
103 3300048915 Ga0496112_0128640 Ga0496112_0128640_1533_2486 314
104 3300049580 Ga0501046_0033914 Ga0501046_0033914_2980_3957 314
105 3300049741 Ga0501079_0305213 Ga0501079_0305213_43_1020 314
106 3300049743 Ga0501081_0027400 Ga0501081_0027400_1404_2381 314
107 3300049824 Ga0501045_0085765 Ga0501045_0085765_110_1087 314
108 3300050490 nmdc:mga03n38_228739_c1 nmdc:mga03n38_228739_c1_11_964 314
109 3300050494 nmdc:mga06z11_55962_c1 nmdc:mga06z11_55962_c1_385_1338 314
110 3300060353 Ga0501082_0035671 Ga0501082_0035671_2072_3049 314
111 3300061734 Ga0530510_0031202 Ga0530510_0031202_2120_3097 314
112 iso_pu_bacteria 2841911363 2841911461 314
113 iso_pu_bacteria 2841917233 2841917924 314
114 iso_pu_bacteria 8055909800 8055909957 314
115 3300031730 Ga0307516_10153593 Ga0307516_101535932 315
116 iso_pu_bacteria 643348564 643599152 315
117 3300005355 Ga0070671_100002411 Ga0070671_10000241113 316
118 3300005548 Ga0070665_100002164 Ga0070665_10000216419 316
119 3300006177 Ga0075362_10014029 Ga0075362_100140291 316
120 3300006178 Ga0075367_10005938 Ga0075367_100059387 316
121 3300006195 Ga0075366_10032006 Ga0075366_100320063 316
122 3300025931 Ga0207644_10000446 Ga0207644_1000044619 316
123 3300028379 Ga0268266_10001459 Ga0268266_1000145920 316
124 3300048924 Ga0496121_0025942 Ga0496121_0025942_3507_4499 316
125 3300006195 Ga0075366_10022324 Ga0075366_100223242 317
126 iso_pu_bacteria 2889790730 2889792610 317
127 iso_pu_bacteria 2889914905 2889919157 317
128 3300006038 Ga0075365_10003123 Ga0075365_100031239 318
129 3300006051 Ga0075364_10005001 Ga0075364_100050017 318
130 3300006178 Ga0075367_10011402 Ga0075367_100114022 318
131 3300050492 nmdc:mga0yw44_61434_c1 nmdc:mga0yw44_61434_c1_80_1045 318
132 3300050494 nmdc:mga06z11_122956_c1 nmdc:mga06z11_122956_c1_83_1048 318
133 3300006051 Ga0075364_10008822 Ga0075364_100088225 319
134 3300025294 Ga0209025_1026162 Ga0209025_10261623 319
135 3300025929 Ga0207664_10008048 Ga0207664_100080482 319
136 3300050491 nmdc:mga00v17_46235_c1 nmdc:mga00v17_46235_c1_1589_2569 319
137 3300005355 Ga0070671_100345139 Ga0070671_1003451392 320
138 3300005364 Ga0070673_100198224 Ga0070673_1001982242 320
139 3300005719 Ga0068861_100272086 Ga0068861_1002720862 320
140 3300009094 Ga0111539_10230156 Ga0111539_102301561 320
141 3300026118 Ga0207675_100156317 Ga0207675_1001563172 320
142 3300047472 Ga0495686_0140514 Ga0495686_0140514_234_1211 320
143 3300049578 Ga0501042_0040418 Ga0501042_0040418_1997_2965 320
144 3300049587 Ga0501071_0046801 Ga0501071_0046801_2075_3043 320
145 iso_pu_bacteria 2643221734 2644737376 320
146 3300005354 Ga0070675_100401317 Ga0070675_1004013172 321
147 3300005719 Ga0068861_100050150 Ga0068861_1000501503 321
148 3300005844 Ga0068862_100040875 Ga0068862_1000408753 321
149 3300005937 Ga0081455_10000028 Ga0081455_1000002885 321
150 3300006038 Ga0075365_10020005 Ga0075365_100200053 321
151 3300006038 Ga0075365_10035715 Ga0075365_100357153 321
152 3300006042 Ga0075368_10001152 Ga0075368_100011522 321
153 3300006051 Ga0075364_10011359 Ga0075364_100113593 321
154 3300006178 Ga0075367_10009341 Ga0075367_100093414 321
155 3300006178 Ga0075367_10033468 Ga0075367_100334683 321
156 3300006846 Ga0075430_100090281 Ga0075430_1000902812 321
157 3300006847 Ga0075431_100025629 Ga0075431_1000256295 321
158 3300006847 Ga0075431_100176944 Ga0075431_1001769442 321
159 3300006871 Ga0075434_100004034 Ga0075434_10000403410 321
160 3300006880 Ga0075429_100113604 Ga0075429_1001136042 321
161 3300006880 Ga0075429_100192611 Ga0075429_1001926112 321
162 3300007076 Ga0075435_100053707 Ga0075435_1000537072 321
163 3300009094 Ga0111539_10085751 Ga0111539_100857512 321
164 3300009147 Ga0114129_10039705 Ga0114129_100397056 321
165 3300025905 Ga0207685_10011662 Ga0207685_100116622 321
166 3300026118 Ga0207675_100072045 Ga0207675_1000720451 321
167 3300027866 Ga0209813_10006845 Ga0209813_100068452 321
168 3300028558 Ga0265326_10026112 Ga0265326_100261122 321
169 3300028563 Ga0265319_1015823 Ga0265319_10158231 321
170 3300028573 Ga0265334_10000148 Ga0265334_1000014833 321
171 3300031235 Ga0265330_10003931 Ga0265330_100039318 321
172 3300031240 Ga0265320_10013670 Ga0265320_100136704 321
173 3300031250 Ga0265331_10006906 Ga0265331_100069063 321
174 3300031344 Ga0265316_10020350 Ga0265316_100203504 321
175 3300031711 Ga0265314_10014215 Ga0265314_100142154 321
176 3300031712 Ga0265342_10007081 Ga0265342_100070815 321
177 3300037068 Ga0373925_0088368 Ga0373925_0088368_1282_2265 321
178 3300039438 Ga0436360_0304134 Ga0436360_0304134_443_1465 321
179 3300039447 Ga0436361_0189887 Ga0436361_0189887_531_1553 321
180 3300048907 Ga0496104_0004706 Ga0496104_0004706_772_1746 321
181 3300048908 Ga0496105_0034629 Ga0496105_0034629_936_1910 321
182 3300048911 Ga0496108_0001594 Ga0496108_0001594_15394_16368 321
183 3300048912 Ga0496109_0013014 Ga0496109_0013014_1628_2602 321
184 3300048913 Ga0496110_0000284 Ga0496110_0000284_1977_2951 321
185 3300048914 Ga0496111_0097297 Ga0496111_0097297_278_1252 321
186 3300049583 Ga0501067_0022431 Ga0501067_0022431_1990_2964 321
187 3300050491 nmdc:mga00v17_12256_c1 nmdc:mga00v17_12256_c1_311_1285 321
188 3300050492 nmdc:mga0yw44_31276_c1 nmdc:mga0yw44_31276_c1_991_1965 321
189 3300050492 nmdc:mga0yw44_93733_c1 nmdc:mga0yw44_93733_c1_657_1631 321
190 3300050494 nmdc:mga06z11_515_c1 nmdc:mga06z11_515_c1_11428_12402 321
191 3300050494 nmdc:mga06z11_5972_c1 nmdc:mga06z11_5972_c1_337_1311 321
192 3300050495 nmdc:mga04h51_14729_c1 nmdc:mga04h51_14729_c1_735_1709 321
193 3300050509 nmdc:mga0qj67_21851_c1 nmdc:mga0qj67_21851_c1_1915_2889 321
194 3300050509 nmdc:mga0qj67_91247_c1 nmdc:mga0qj67_91247_c1_195_1175 321
195 3300050510 nmdc:mga06r32_1601_c1 nmdc:mga06r32_1601_c1_642_1622 321
196 3300050510 nmdc:mga06r32_5359_c1 nmdc:mga06r32_5359_c1_8054_9028 321
197 3300050511 nmdc:mga08y16_311804_c1 nmdc:mga08y16_311804_c1_127_1110 321
198 3300060353 Ga0501082_0345632 Ga0501082_0345632_190_1164 321
199 3300005435 Ga0070714_100022011 Ga0070714_1000220112 322
200 3300005439 Ga0070711_100416415 Ga0070711_1004164151 322
201 3300006175 Ga0070712_100013591 Ga0070712_1000135914 322
202 3300025915 Ga0207693_10003287 Ga0207693_1000328714 322
203 3300031456 Ga0307513_10021029 Ga0307513_100210297 322
204 3300033180 Ga0307510_10001841 Ga0307510_1000184121 322
205 3300046506 Ga0495583_0002688 Ga0495583_0002688_4610_5587 322
206 3300046616 Ga0495668_0027259 Ga0495668_0027259_1206_2183 322
207 3300046660 Ga0495625_0019107 Ga0495625_0019107_1052_2029 322
208 3300047445 Ga0495677_0001641 Ga0495677_0001641_3379_4356 322
209 3300048910 Ga0496107_0006383 Ga0496107_0006383_2331_3314 322
210 3300048924 Ga0496121_0019969 Ga0496121_0019969_3920_4903 322
211 3300053136 Ga0500559_0013294 Ga0500559_0013294_1786_2760 322
212 3300006051 Ga0075364_10043239 Ga0075364_100432393 323
213 3300006353 Ga0075370_10038517 Ga0075370_100385172 323
214 3300006844 Ga0075428_100014020 Ga0075428_1000140207 323
215 3300025939 Ga0207665_10322249 Ga0207665_103222491 323
216 3300049569 Ga0501032_0088794 Ga0501032_0088794_1024_2001 323
217 3300049570 Ga0501033_0124356 Ga0501033_0124356_841_1818 323
218 3300049572 Ga0501036_0103944 Ga0501036_0103944_1175_2152 323
219 3300049574 Ga0501038_0170089 Ga0501038_0170089_343_1320 323
220 3300049581 Ga0501047_0082057 Ga0501047_0082057_711_1688 323
221 3300049589 Ga0501073_0245762 Ga0501073_0245762_177_1187 323
222 3300049822 Ga0501035_0081112 Ga0501035_0081112_778_1755 323
223 3300049823 Ga0501044_0067123 Ga0501044_0067123_1365_2342 323
224 iso_pu_bacteria 2919450847 2919452262 323
225 iso_pu_bacteria 8001845381 8001845940 323
226 3300003187 JGI25151J46595_10000052 JGI25151J46595_1000005298 324
227 3300003775 Ga0055524_1000014 Ga0055524_100001462 324
228 3300009147 Ga0114129_10316250 Ga0114129_103162502 324
229 3300013250 Ga0171462_1012 Ga0171462_1012153 324
230 3300025273 Ga0209673_1022131 Ga0209673_10221312 324
231 3300025291 Ga0209675_1001679 Ga0209675_10016799 324
232 3300025294 Ga0209025_1000017 Ga0209025_100001773 324
233 3300025295 Ga0209564_1000082 Ga0209564_1000082165 324
234 3300025299 Ga0209256_1000033 Ga0209256_1000033286 324
235 3300048926 Ga0496123_0040278 Ga0496123_0040278_1070_2059 324
236 3300048929 Ga0496126_0070494 Ga0496126_0070494_597_1571 324
237 3300049573 Ga0501037_0047932 Ga0501037_0047932_1940_2929 324
238 3300049588 Ga0501072_0057145 Ga0501072_0057145_1122_2189 324
239 3300049591 Ga0501075_0023581 Ga0501075_0023581_3363_4430 324
240 3300049741 Ga0501079_0085595 Ga0501079_0085595_1212_2279 324
241 3300049824 Ga0501045_0140728 Ga0501045_0140728_535_1602 324
242 3300060353 Ga0501082_0197082 Ga0501082_0197082_549_1616 324
243 3300061734 Ga0530510_0005989 Ga0530510_0005989_4833_5900 324

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00389

2-Hacid_dh

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

38

348

0.95

PF02826

2-Hacid_dh_C

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

142

316

0.94

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

181

306

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5v72-assembly2.cif.gz_B crystal structure of nadph-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with citrate 0.9557 6 323
5v72-assembly2.cif.gz_B crystal structure of nadph-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with citrate 0.9527 6 323
5v72-assembly1.cif.gz_A crystal structure of nadph-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with citrate 0.9469 5 324
4lsw-assembly1.cif.gz_A crystallization and structural analysis of 2-hydroxyacid dehydrogenase from ketogulonicigenium vulgare y25 0.9457 5 316
5v6q-assembly2.cif.gz_C crystal structure of nadph-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with nadp and malonate 0.9437 5 324
ID Description Score Start End Superfamily
af_K7L0E3_188_326_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9844 175 310 3.40.50.720
af_Q7XRA3_150_294_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9827 148 288 3.40.50.720
af_Q9LE33_108_292_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9826 106 288 3.40.50.720
af_A0A0R0KIU5_101_193_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9754 197 288 3.40.50.720
5j23A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9749 106 288 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A845HGW1-F1-model_v4 2-hydroxyacid dehydrogenase 0.9861 148 316 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A7N0VHN0-F1-model_v4 Hydroxyphenylpyruvate reductase 0.9852 94 316 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A519EK37-F1-model_v4 2-hydroxyacid dehydrogenase 0.9851 148 316 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A453AAZ5-F1-model_v4 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein 0.9838 148 317 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A5P1FLX5-F1-model_v4 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein 0.9834 127 317 GO:0005829
GO:0016618
GO:0030267
GO:0051287

Feature Viewer

pLDDT pTM Quality
94.25 0.89 High
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Predicted Structure (AlphaFold2)

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