F355998

General Info

Members Datasets Scaffolds Average Seq Length
243 170 476 584

Family's Representative Sequence

Representative Sequence 3300049588|Ga0501072_0025375|Ga0501072_0025375_775_2736
Length 630
Sequence MGDRTLPARHTQNPEGDFKKGAVEHLAPPCIWREFRTRGTDPRLRARAKTFQISHCGPAEGGVRARSMPRETFRIELIKPSHYDADGYVIQWLRSTIPSNSLASVYGLLAECAAEKVLGGDVDIEINPVDECNTVVSNQFPRALDLARQFRAAGIPVVIGGFHVSGCIAMLPDLPADLKEALDLGITLYAGEGEGRMSELLLDMRAGKAKPIYNYLSDMPDMADATLPILPRDTVTRVAGHYTSFDAGRGCPFQCSFCTIINVQGRKSRYRTPDDVERIVRENAQQGITRFFITDDNFARNRNWEPLLDRLIELREVHGFRIRLMLQVDTLCHRIPGFIEKSARAGCTAVFIGLENINPESLLGTKKRQNKIWEYREMLQAWRAQHVMTYAGYILGFPTDTPASIARDIDIIKNELPIDLLEFFFLTPLPGSEDHKTLMSKGVPMDPDMNNYDLEHACTAHSRMSKVEWEKVYADAWSRYYSDEHVERILRRAVVSGINRTKILDALIVFSGATRIENVHPLQFGFVRRKIRTQRRHGLPVVNPLIFYPWRAWDFARNLLAWLRHVKRYRAILKRVAADPDAASYTDEALTPVTSAAEDHFVQMYADKIPDTHGAPKRDKAKAEPVVAAE

Samples

Sample ID Description Type Environment
1 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
2 3300002070 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 Metagenome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
24 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
25 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
34 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
35 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
36 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
37 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
62 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
63 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
64 3300025271 Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
66 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
68 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
95 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
96 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
97 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
98 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
99 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
100 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
101 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
102 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
103 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
104 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
105 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
106 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
107 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
108 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
109 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
110 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
111 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
112 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
113 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
114 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
115 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
116 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
117 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
118 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
119 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
120 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
121 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
122 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
123 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
124 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
125 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
126 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
127 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
128 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
129 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
130 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
131 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
132 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
133 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
136 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
137 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
138 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
139 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
140 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
141 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
142 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
143 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
144 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
145 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
146 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
147 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
148 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
149 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
150 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
151 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
152 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
154 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
155 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
156 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
157 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
158 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
159 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
160 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
161 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
162 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
163 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
164 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
165 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
166 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
167 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
168 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
169 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
170 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.94
Metatranscriptomes 2.06
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.17
Nodule 0
Rhizoplane 0.41
Rhizosphere 92.18
Stem 0
Stem Tuber 0
Unclassified 0.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501072_0025375 3300049588 Bacteria 4617
2 JGI24750J21931_1002568 3300002070 Bacteria 2190
3 JGI25151J46595_10000468 3300003187 Bacteria 38636
4 JGI25160J50197_1003198 3300003354 Bacteria 7417
5 Ga0065712_10090830 3300005290 Bacteria 2381
6 Ga0065712_10099682 3300005290 Bacteria 2084
7 Ga0065715_10123890 3300005293 Unclassified 2167
8 Ga0070676_10012576 3300005328 Bacteria 4625
9 Ga0070676_10017975 3300005328 Bacteria 3915
10 Ga0070670_100006899 3300005331 Bacteria 9627
11 Ga0070666_10065356 3300005335 Bacteria 2468
12 Ga0070666_10082412 3300005335 Bacteria 2200
13 Ga0070689_100040905 3300005340 Bacteria 3555
14 Ga0070689_100071454 3300005340 Bacteria 2711
15 Ga0070687_100035051 3300005343 Bacteria 2489
16 Ga0070661_100029532 3300005344 Bacteria 3957
17 Ga0070668_100093277 3300005347 Bacteria 2375
18 Ga0070675_100017483 3300005354 Bacteria 5698
19 Ga0070671_100018101 3300005355 Bacteria 5719
20 Ga0070674_100015139 3300005356 Bacteria 4809
21 Ga0070674_100016138 3300005356 Bacteria 4680
22 Ga0070673_100004452 3300005364 Bacteria 8857
23 Ga0070673_100094193 3300005364 Bacteria 2454
24 Ga0070688_100039416 3300005365 Bacteria 2890
25 Ga0070667_100028115 3300005367 Bacteria 4680
26 Ga0070667_100057633 3300005367 Bacteria 3284
27 Ga0070701_10034294 3300005438 Bacteria 2541
28 Ga0070700_100005883 3300005441 Bacteria 6517
29 Ga0070678_100005663 3300005456 Bacteria 7257
30 Ga0070685_10024750 3300005466 Bacteria 3300
31 Ga0070706_100076736 3300005467 Bacteria 3092
32 Ga0070697_100050613 3300005536 Bacteria 3373
33 Ga0070672_100039551 3300005543 Bacteria 3613
34 Ga0070672_100099779 3300005543 Bacteria 2354
35 Ga0070686_100057407 3300005544 Bacteria 2500
36 Ga0068854_100056685 3300005578 Bacteria 2825
37 Ga0068852_100058115 3300005616 Bacteria 3348
38 Ga0068859_100231179 3300005617 Bacteria 1937
39 Ga0068858_100110454 3300005842 Bacteria 2567
40 Ga0068858_100153475 3300005842 Bacteria 2166
41 Ga0068860_100130233 3300005843 Bacteria 2413
42 Ga0081538_10001703 3300005981 Bacteria 22414
43 Ga0081538_10049558 3300005981 Bacteria 2546
44 Ga0075363_100000713 3300006048 Bacteria 11278
45 Ga0075364_10022171 3300006051 Bacteria 4008
46 Ga0070712_100002658 3300006175 Bacteria 11030
47 Ga0070712_100020978 3300006175 Bacteria 4283
48 Ga0075366_10007845 3300006195 Bacteria 5906
49 Ga0097621_100090049 3300006237 Bacteria 2566
50 Ga0075428_100167984 3300006844 Bacteria 2379
51 Ga0075430_100000082 3300006846 Bacteria 53500
52 Ga0075431_100033091 3300006847 Bacteria 5328
53 Ga0075434_100080905 3300006871 Bacteria 3246
54 Ga0075434_100123856 3300006871 Bacteria 2602
55 Ga0075429_100012702 3300006880 Bacteria 7305
56 Ga0097620_100231153 3300006931 Bacteria 1937
57 Ga0099795_10001689 3300007788 Bacteria 4901
58 Ga0105240_10046791 3300009093 Bacteria 5479
59 Ga0111539_10014710 3300009094 Bacteria 9762
60 Ga0111539_10033573 3300009094 Bacteria 6230
61 Ga0111539_10132981 3300009094 Bacteria 2913
62 Ga0111539_10138668 3300009094 Bacteria 2848
63 Ga0111539_10174659 3300009094 Bacteria 2510
64 Ga0105245_10109022 3300009098 Bacteria 2572
65 Ga0114129_10001100 3300009147 Bacteria 35529
66 Ga0114129_10226859 3300009147 Bacteria 2517
67 Ga0105243_10104848 3300009148 Bacteria 2354
68 Ga0105248_10033596 3300009177 Bacteria 5730
69 Ga0105237_10070787 3300009545 Bacteria 3483
70 Ga0105249_10061279 3300009553 Bacteria 3452
71 Ga0099796_10001612 3300010159 Bacteria 4643
72 Ga0105239_10178269 3300010375 Bacteria 2377
73 Ga0157374_10163451 3300013296 Bacteria 2169
74 Ga0157378_10074239 3300013297 Bacteria 3060
75 Ga0157375_10025985 3300013308 Bacteria 5451
76 Ga0163163_10047213 3300014325 Bacteria 4232
77 Ga0163163_10094119 3300014325 Bacteria 3013
78 Ga0163163_10141576 3300014325 Bacteria 2448
79 Ga0157380_10072067 3300014326 Bacteria 2797
80 Ga0157380_10117719 3300014326 Bacteria 2244
81 Ga0157379_10111032 3300014968 Bacteria 2462
82 Ga0157376_10086896 3300014969 Unclassified 2697
83 Ga0157376_10148576 3300014969 Bacteria 2111
84 Ga0228598_1004536 3300024227 Bacteria 2938
85 Ga0207666_1001701 3300025271 Bacteria 2617
86 Ga0209130_1000674 3300025284 Bacteria 30898
87 Ga0209025_1000251 3300025294 Bacteria 126418
88 Ga0207426_1000179 3300025302 Bacteria 158635
89 Ga0207697_10008855 3300025315 Bacteria 4377
90 Ga0207682_10002532 3300025893 Bacteria 8173
91 Ga0207682_10027552 3300025893 Bacteria 2263
92 Ga0207688_10001035 3300025901 Bacteria 14247
93 Ga0207645_10029928 3300025907 Bacteria 3509
94 Ga0207645_10075065 3300025907 Bacteria 2164
95 Ga0207643_10005027 3300025908 Bacteria 7085
96 Ga0207693_10002830 3300025915 Bacteria 15024
97 Ga0207693_10030937 3300025915 Bacteria 4228
98 Ga0207693_10053591 3300025915 Bacteria 3164
99 Ga0207693_10077724 3300025915 Bacteria 2599
100 Ga0207662_10037480 3300025918 Bacteria 2837
101 Ga0207681_10022711 3300025923 Bacteria 4003
102 Ga0207681_10023243 3300025923 Bacteria 3963
103 Ga0207659_10076890 3300025926 Bacteria 2455
104 Ga0207687_10078683 3300025927 Bacteria 2375
105 Ga0207700_10087113 3300025928 Bacteria 2455
106 Ga0207644_10027902 3300025931 Bacteria 3902
107 Ga0207706_10035309 3300025933 Bacteria 4446
108 Ga0207706_10063893 3300025933 Bacteria 3241
109 Ga0207686_10021555 3300025934 Bacteria 3700
110 Ga0207691_10015409 3300025940 Bacteria 7273
111 Ga0207691_10050467 3300025940 Bacteria 3808
112 Ga0207689_10056786 3300025942 Bacteria 3221
113 Ga0207668_10114419 3300025972 Bacteria 2030
114 Ga0207640_10065169 3300025981 Bacteria 2430
115 Ga0207677_10110991 3300026023 Bacteria 2042
116 Ga0207708_10003654 3300026075 Bacteria 11350
117 Ga0207648_10009069 3300026089 Bacteria 9568
118 Ga0207674_10123406 3300026116 Bacteria 2556
119 Ga0207675_100061378 3300026118 Bacteria 3509
120 Ga0207683_10008644 3300026121 Bacteria 8707
121 Ga0207428_10027010 3300027907 Bacteria 4782
122 Ga0207428_10036319 3300027907 Bacteria 4019
123 Ga0207428_10058042 3300027907 Bacteria 3072
124 Ga0268265_10044247 3300028380 Bacteria 3314
125 Ga0265340_10023806 3300031247 Bacteria 3118
126 Ga0316579_10039619 3300031691 Bacteria 2183
127 Ga0316576_10003937 3300031727 Bacteria 8815
128 Ga0316576_10021537 3300031727 Bacteria 4460
129 Ga0316576_10084122 3300031727 Bacteria 2364
130 Ga0316578_10007458 3300031728 Bacteria 5489
131 Ga0316592_1000843 3300033524 Bacteria 4615
132 Ga0316592_1003416 3300033524 Bacteria 2859
133 Ga0316588_1001693 3300033528 Bacteria 3696
134 Ga0316588_1007316 3300033528 Bacteria 2238
135 Ga0316596_1002084 3300033541 Bacteria 4217
136 Ga0373923_0041663 3300035111 Bacteria 1894
137 Ga0373945_0002772 3300035116 Bacteria 5501
138 Ga0373956_0020355 3300035119 Bacteria 2822
139 Ga0316574_0054634 3300035398 Bacteria 2494
140 Ga0373927_0001678 3300035695 Bacteria 16555
141 Ga0373927_0039386 3300035695 Bacteria 3067
142 Ga0373927_0061013 3300035695 Bacteria 2440
143 Ga0373933_0002949 3300035724 Bacteria 9487
144 Ga0373933_0047250 3300035724 Bacteria 2559
145 Ga0373947_0004347 3300035725 Bacteria 8314
146 Ga0373947_0035092 3300035725 Bacteria 2969
147 Ga0373937_0000478 3300036401 Bacteria 36732
148 Ga0373937_0011809 3300036401 Bacteria 7667
149 Ga0373937_0077437 3300036401 Bacteria 3073
150 Ga0316584_0023254 3300036712 Bacteria 4528
151 Ga0316584_0023741 3300036712 Bacteria 4480
152 Ga0436365_1533801 3300039437 Bacteria 5999
153 Ga0436365_1722463 3300039437 Bacteria 7389
154 Ga0436361_0283750 3300039447 Bacteria 2534
155 Ga0436363_1650122 3300039450 Bacteria 4580
156 Ga0436362_0326343 3300039453 Bacteria 2438
157 Ga0439453_0000146 3300041408 Bacteria 6251
158 Ga0439435_0001112 3300042436 Bacteria 4792
159 Ga0495592_0016729 3300046454 Bacteria 5566
160 Ga0495592_0064492 3300046454 Bacteria 2685
161 Ga0495629_0002539 3300046459 Bacteria 14001
162 Ga0495638_0014409 3300046460 Bacteria 5344
163 Ga0495651_0000303 3300046462 Bacteria 38437
164 Ga0495662_0002693 3300046476 Bacteria 8975
165 Ga0495662_0022651 3300046476 Bacteria 3033
166 Ga0495664_0032494 3300046477 Bacteria 3062
167 Ga0495610_0015802 3300046512 Bacteria 4372
168 Ga0495618_0005963 3300046514 Bacteria 7402
169 Ga0495618_0011358 3300046514 Bacteria 5397
170 Ga0495630_0041442 3300046517 Bacteria 3438
171 Ga0495652_0001947 3300046529 Bacteria 21945
172 Ga0495652_0026508 3300046529 Bacteria 5119
173 Ga0495665_0014272 3300046531 Bacteria 4286
174 Ga0495665_0022502 3300046531 Bacteria 3389
175 Ga0495640_0058138 3300046533 Bacteria 2638
176 Ga0495586_0014171 3300046535 Bacteria 4237
177 Ga0495598_0003774 3300046537 Bacteria 3238
178 Ga0495621_0010473 3300046539 Bacteria 2838
179 Ga0495645_0005380 3300046543 Bacteria 8781
180 Ga0495645_0094106 3300046543 Bacteria 2138
181 Ga0495667_0007727 3300046559 Bacteria 7286
182 Ga0495634_0011001 3300046642 Bacteria 6603
183 Ga0495634_0017876 3300046642 Bacteria 5054
184 Ga0495635_0004934 3300046663 Bacteria 9286
185 Ga0495635_0030736 3300046663 Bacteria 3731
186 Ga0495657_0018823 3300046675 Bacteria 4991
187 Ga0495646_0022781 3300046680 Bacteria 3948
188 Ga0495646_0034015 3300046680 Bacteria 3167
189 Ga0495658_0011126 3300046683 Bacteria 4517
190 Ga0495613_0017965 3300046689 Bacteria 5271
191 Ga0495624_0063623 3300046690 Bacteria 2306
192 Ga0495649_0060960 3300046694 Bacteria 2029
193 Ga0495600_0013472 3300046809 Bacteria 5138
194 Ga0495600_0062472 3300046809 Bacteria 2433
195 Ga0495581_0027663 3300047315 Bacteria 3289
196 Ga0495604_0000436 3300047317 Bacteria 37082
197 Ga0495604_0083002 3300047317 Bacteria 2395
198 Ga0495674_0001565 3300047319 Bacteria 22422
199 Ga0495676_0035221 3300047321 Bacteria 4189
200 Ga0495680_0001019 3300047322 Bacteria 31132
201 Ga0495675_0076886 3300047444 Bacteria 2103
202 Ga0495684_0001444 3300047471 Bacteria 19026
203 Ga0495684_0003420 3300047471 Bacteria 12438
204 Ga0495593_0039091 3300047673 Bacteria 2560
205 Ga0495602_0013656 3300048088 Bacteria 8286
206 Ga0496108_0063631 3300048911 Bacteria 3107
207 Ga0501047_0133741 3300049581 Bacteria 2360
208 Ga0501073_0064024 3300049589 Bacteria 2564
209 Ga0501083_0061494 3300049744 Bacteria 2507
210 Ga0501044_0106515 3300049823 Bacteria 2816
211 Ga0501044_0124286 3300049823 Bacteria 2578
212 nmdc:mga03n38_3972_c1 3300050490 Bacteria 4830
213 nmdc:mga0k408_3327_c1 3300050493 Bacteria 8506
214 nmdc:mga06z11_61809_c1 3300050494 Bacteria 1955
215 nmdc:mga07m45_33717_c1 3300050496 Bacteria 2844
216 nmdc:mga05p37_1094_c1 3300050507 Bacteria 31123
217 nmdc:mga05p37_155555_c1 3300050507 Bacteria 2794
218 nmdc:mga05p37_58991_c1 3300050507 Bacteria 4726
219 nmdc:mga09592_20988_c1 3300050508 Bacteria 5378
220 nmdc:mga09592_94064_c1 3300050508 Bacteria 2563
221 nmdc:mga0qj67_112_c1 3300050509 Bacteria 53272
222 nmdc:mga08y16_139745_c1 3300050511 Bacteria 2518
223 nmdc:mga08y16_15271_c1 3300050511 Bacteria 8078
224 nmdc:mga08y16_54242_c1 3300050511 Bacteria 4189
225 nmdc:mga08y16_86420_c1 3300050511 Bacteria 3268
226 nmdc:mga0n895_65460_c1 3300050512 Bacteria 3597
227 nmdc:mga0n895_75323_c1 3300050512 Bacteria 3354
228 nmdc:mga0rr50_27007_c1 3300050513 Bacteria 4014
229 Ga0495601_0000881 3300053077 Bacteria 16381
230 Ga0495601_0002492 3300053077 Bacteria 10470
231 Ga0495601_0033952 3300053077 Bacteria 3179
232 Ga0495601_0064954 3300053077 Bacteria 2322
233 Ga0495612_0000806 3300053078 Bacteria 12770
234 Ga0495595_0000786 3300053084 Bacteria 12053
235 Ga0495619_0001879 3300053085 Bacteria 13991
236 Ga0495619_0002496 3300053085 Bacteria 12042
237 Ga0495619_0069945 3300053085 Bacteria 2347
238 Ga0500641_0010472 3300053096 Bacteria 3352
239 Ga0501072_0025375
240 JGI24750J21931_1002568
241 JGI25151J46595_10000468
242 JGI25160J50197_1003198
243 Ga0065712_10090830
244 Ga0065712_10099682
245 Ga0065715_10123890
246 Ga0070676_10012576
247 Ga0070676_10017975
248 Ga0070670_100006899
249 Ga0070666_10065356
250 Ga0070666_10082412
251 Ga0070689_100040905
252 Ga0070689_100071454
253 Ga0070687_100035051
254 Ga0070661_100029532
255 Ga0070668_100093277
256 Ga0070675_100017483
257 Ga0070671_100018101
258 Ga0070674_100015139
259 Ga0070674_100016138
260 Ga0070673_100004452
261 Ga0070673_100094193
262 Ga0070688_100039416
263 Ga0070667_100028115
264 Ga0070667_100057633
265 Ga0070701_10034294
266 Ga0070700_100005883
267 Ga0070678_100005663
268 Ga0070685_10024750
269 Ga0070706_100076736
270 Ga0070697_100050613
271 Ga0070672_100039551
272 Ga0070672_100099779
273 Ga0070686_100057407
274 Ga0068854_100056685
275 Ga0068852_100058115
276 Ga0068859_100231179
277 Ga0068858_100110454
278 Ga0068858_100153475
279 Ga0068860_100130233
280 Ga0081538_10001703
281 Ga0081538_10049558
282 Ga0075363_100000713
283 Ga0075364_10022171
284 Ga0070712_100002658
285 Ga0070712_100020978
286 Ga0075366_10007845
287 Ga0097621_100090049
288 Ga0075428_100167984
289 Ga0075430_100000082
290 Ga0075431_100033091
291 Ga0075434_100080905
292 Ga0075434_100123856
293 Ga0075429_100012702
294 Ga0097620_100231153
295 Ga0099795_10001689
296 Ga0105240_10046791
297 Ga0111539_10014710
298 Ga0111539_10033573
299 Ga0111539_10132981
300 Ga0111539_10138668
301 Ga0111539_10174659
302 Ga0105245_10109022
303 Ga0114129_10001100
304 Ga0114129_10226859
305 Ga0105243_10104848
306 Ga0105248_10033596
307 Ga0105237_10070787
308 Ga0105249_10061279
309 Ga0099796_10001612
310 Ga0105239_10178269
311 Ga0157374_10163451
312 Ga0157378_10074239
313 Ga0157375_10025985
314 Ga0163163_10047213
315 Ga0163163_10094119
316 Ga0163163_10141576
317 Ga0157380_10072067
318 Ga0157380_10117719
319 Ga0157379_10111032
320 Ga0157376_10086896
321 Ga0157376_10148576
322 Ga0228598_1004536
323 Ga0207666_1001701
324 Ga0209130_1000674
325 Ga0209025_1000251
326 Ga0207426_1000179
327 Ga0207697_10008855
328 Ga0207682_10002532
329 Ga0207682_10027552
330 Ga0207688_10001035
331 Ga0207645_10029928
332 Ga0207645_10075065
333 Ga0207643_10005027
334 Ga0207693_10002830
335 Ga0207693_10030937
336 Ga0207693_10053591
337 Ga0207693_10077724
338 Ga0207662_10037480
339 Ga0207681_10022711
340 Ga0207681_10023243
341 Ga0207659_10076890
342 Ga0207687_10078683
343 Ga0207700_10087113
344 Ga0207644_10027902
345 Ga0207706_10035309
346 Ga0207706_10063893
347 Ga0207686_10021555
348 Ga0207691_10015409
349 Ga0207691_10050467
350 Ga0207689_10056786
351 Ga0207668_10114419
352 Ga0207640_10065169
353 Ga0207677_10110991
354 Ga0207708_10003654
355 Ga0207648_10009069
356 Ga0207674_10123406
357 Ga0207675_100061378
358 Ga0207683_10008644
359 Ga0207428_10027010
360 Ga0207428_10036319
361 Ga0207428_10058042
362 Ga0268265_10044247
363 Ga0265340_10023806
364 Ga0316579_10039619
365 Ga0316576_10003937
366 Ga0316576_10021537
367 Ga0316576_10084122
368 Ga0316578_10007458
369 Ga0316592_1000843
370 Ga0316592_1003416
371 Ga0316588_1001693
372 Ga0316588_1007316
373 Ga0316596_1002084
374 Ga0373923_0041663
375 Ga0373945_0002772
376 Ga0373956_0020355
377 Ga0316574_0054634
378 Ga0373927_0001678
379 Ga0373927_0039386
380 Ga0373927_0061013
381 Ga0373933_0002949
382 Ga0373933_0047250
383 Ga0373947_0004347
384 Ga0373947_0035092
385 Ga0373937_0000478
386 Ga0373937_0011809
387 Ga0373937_0077437
388 Ga0316584_0023254
389 Ga0316584_0023741
390 Ga0436365_1533801
391 Ga0436365_1722463
392 Ga0436361_0283750
393 Ga0436363_1650122
394 Ga0436362_0326343
395 Ga0439453_0000146
396 Ga0439435_0001112
397 Ga0495592_0016729
398 Ga0495592_0064492
399 Ga0495629_0002539
400 Ga0495638_0014409
401 Ga0495651_0000303
402 Ga0495662_0002693
403 Ga0495662_0022651
404 Ga0495664_0032494
405 Ga0495610_0015802
406 Ga0495618_0005963
407 Ga0495618_0011358
408 Ga0495630_0041442
409 Ga0495652_0001947
410 Ga0495652_0026508
411 Ga0495665_0014272
412 Ga0495665_0022502
413 Ga0495640_0058138
414 Ga0495586_0014171
415 Ga0495598_0003774
416 Ga0495621_0010473
417 Ga0495645_0005380
418 Ga0495645_0094106
419 Ga0495667_0007727
420 Ga0495634_0011001
421 Ga0495634_0017876
422 Ga0495635_0004934
423 Ga0495635_0030736
424 Ga0495657_0018823
425 Ga0495646_0022781
426 Ga0495646_0034015
427 Ga0495658_0011126
428 Ga0495613_0017965
429 Ga0495624_0063623
430 Ga0495649_0060960
431 Ga0495600_0013472
432 Ga0495600_0062472
433 Ga0495581_0027663
434 Ga0495604_0000436
435 Ga0495604_0083002
436 Ga0495674_0001565
437 Ga0495676_0035221
438 Ga0495680_0001019
439 Ga0495675_0076886
440 Ga0495684_0001444
441 Ga0495684_0003420
442 Ga0495593_0039091
443 Ga0495602_0013656
444 Ga0496108_0063631
445 Ga0501047_0133741
446 Ga0501073_0064024
447 Ga0501083_0061494
448 Ga0501044_0106515
449 Ga0501044_0124286
450 nmdc:mga03n38_3972_c1
451 nmdc:mga0k408_3327_c1
452 nmdc:mga06z11_61809_c1
453 nmdc:mga07m45_33717_c1
454 nmdc:mga05p37_1094_c1
455 nmdc:mga05p37_155555_c1
456 nmdc:mga05p37_58991_c1
457 nmdc:mga09592_20988_c1
458 nmdc:mga09592_94064_c1
459 nmdc:mga0qj67_112_c1
460 nmdc:mga08y16_139745_c1
461 nmdc:mga08y16_15271_c1
462 nmdc:mga08y16_54242_c1
463 nmdc:mga08y16_86420_c1
464 nmdc:mga0n895_65460_c1
465 nmdc:mga0n895_75323_c1
466 nmdc:mga0rr50_27007_c1
467 Ga0495601_0000881
468 Ga0495601_0002492
469 Ga0495601_0033952
470 Ga0495601_0064954
471 Ga0495612_0000806
472 Ga0495595_0000786
473 Ga0495619_0001879
474 Ga0495619_0002496
475 Ga0495619_0069945
476 Ga0500641_0010472

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

246

412

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6b4c-assembly8.cif.gz_H structure of viperin from trichoderma virens 0.7721 202 354
7voc-assembly1.cif.gz_C the crystal structure of a radical sam enzyme blse involved in the biosynthesis of blasticidin s 0.736 229 388
5v1t-assembly1.cif.gz_A crystal structure of streptococcus suis suib bound to precursor peptide suia 0.73 202 385
5ff4-assembly1.cif.gz_A hyde from t. maritima in complex with (2r,4r)-tmetda 0.7155 202 393
6wtf-assembly1.cif.gz_A structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7134 8 401
ID Description Score Start End Superfamily
af_Q58536_158_370_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7944 252 402 3.80.30.20
af_Q4CUJ9_220_394_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.7909 268 402 3.30.750.200
af_A0A0R0IRV7_127_250_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.7708 308 436 3.30.750.200
af_Q2FXY9_7_216_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7652 233 433 3.80.30.20
af_A4IGH2_157_284_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.7649 311 439 3.30.750.200
ID Description Score Start End GO Terms
AF-A0A833FWZ6-F1-model_v4 Radical SAM protein 0.9729 5 133
AF-A0A554TRX5-F1-model_v4 deleted 0.9713 329 433
AF-A0A521LEG1-F1-model_v4 Radical SAM protein 0.962 2 452 GO:0003824
GO:0005829
GO:0051536
AF-A0A521LEG1-F1-model_v4 Radical SAM protein 0.9495 2 452 GO:0003824
GO:0005829
GO:0051536
AF-A0A1H8W7S5-F1-model_v4 Radical SAM superfamily enzyme YgiQ, UPF0313 family 0.9455 2 564 GO:0003824
GO:0005829
GO:0051536

Map