F353184

General Info

Members Datasets Scaffolds Average Seq Length
240 154 214 589

Family's Representative Sequence

Representative Sequence 3300046558|Ga0495633_0000027|Ga0495633_0000027_32091_33965
Length 624
Sequence VGNEGYSAKHIKGDQGTVGGLPGKMKKVVFILLTSLAFQNSFAQHHPKKRKMEQTTADHKLIIYQLLPRLFGNTKTLNKTNGSIEENGVGKLNDINDKALHEIKKMGFTYVWYTGVIEHATMTDYSAYGIKADDPDIVKGRAGSPYAIKDYYDIDPDLAVDVKNRIGEFEELIKRTHANGLKVLMDLVPNHVARTYASDVKPAGVRDFGQDDDKSKGFSPQNDFYYIPGQPFVVPAGYNPGGDEFKSPLKDGKFDENPAKATGNDVFSASPSINDWFETMKLNYGVDYMDHRGGHFDPIPPLWNKVYDILKYWTAKGVDGFRCDMVEMVPLEFWAWVIPKMKAEHPGIVFIGEAYDKGKYSDYIFKGHFDYLYDKVGLYDTIRNLTRNDYHTNTWGINAVWNHDSKGIDQHMLRFMENHDEQRIASPDFAGNPWLAIPGMIITATLNTGPVMIYFGQEVGEPGAGSEGFSGNDGRSSIFDYWGVPEHQKWLNGGAYDGGKLSGDQKELRGFYSTLLNAVHNGEAIKTGAFYELMMANEHQPGFDTKMYIYLRYTNNQRILVITNFNREARKLSVKLPDDLLHKLNINGKQQFTDLLSGSKFNTDDIKNGVEVTVGASSGLMLEF

Samples

Sample ID Description Type Environment
1 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
2 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
3 2738541283 Pedobacter sp. OK701 Isolate Unclassified
4 2738541284 Pedobacter sp. YR016 Isolate Unclassified
5 2738541302 Pedobacter sp. CF074 Isolate Unclassified
6 2738543023 Pedobacter sp. OK628 Isolate Unclassified
7 2739367651 Pedobacter sp. OK291 Isolate Unclassified
8 2739367656 Pedobacter sp. CF523 Isolate Unclassified
9 2739367663 Pedobacter sp. YR510 Isolate Unclassified
10 2818991437 Pedobacter terrae 518 Isolate Unclassified
11 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
12 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
13 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
14 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
15 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
16 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
17 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
18 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
19 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
20 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
21 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
22 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
23 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
24 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
25 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
26 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
27 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
28 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
29 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
30 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
31 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
32 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
33 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
34 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
35 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
36 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
37 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
38 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
39 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
40 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
41 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
42 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
43 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
44 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
45 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
46 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
47 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
48 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
49 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
50 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
51 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
52 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
53 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
54 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
55 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
56 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
57 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
58 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
59 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
60 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
61 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
62 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
63 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
64 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
67 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
68 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
69 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
70 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
71 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
72 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
73 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
74 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
75 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
76 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
77 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
78 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
79 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
80 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
81 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
82 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
83 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
84 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
85 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
86 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
87 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
89 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
90 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
111 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
112 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
113 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
114 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
115 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
116 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
117 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
118 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
119 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
120 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
121 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
122 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
123 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
124 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
125 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
126 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
127 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
128 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
129 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
130 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
131 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
132 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
133 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
134 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
135 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
136 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
137 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
138 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
139 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
140 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
141 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
142 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
143 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
144 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
145 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
146 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
147 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
148 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
149 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
150 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
151 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
152 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
153 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
154 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.17
Metatranscriptomes 0
Isolates 10.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.67
Nodule 0
Rhizoplane 0.42
Rhizosphere 74.58
Stem 0
Stem Tuber 0
Unclassified 13.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10002092 3300001990 Bacteria 7133
2 JGI24735J21928_10000008 3300002067 Bacteria 319819
3 JGI25162J39368_1000059 3300002737 Bacteria 138925
4 JGI25152J39213_1000006 3300002773 Bacteria 158516
5 JGI25150J39212_1000005 3300002774 Bacteria 311800
6 JGI25151J46595_10000004 3300003187 Bacteria 494006
7 JGI25165J46597_1002482 3300003214 Bacteria 5877
8 JGI25153J46596_10000004 3300003215 Bacteria 494006
9 rootH1_10064296 3300003316 Bacteria 2755
10 rootH2_10006878 3300003320 Bacteria 66386
11 rootH2_10008353 3300003320 Bacteria 41961
12 rootH2_10146773 3300003320 Bacteria 4480
13 rootH1_10003476 3300003323 Bacteria 16026
14 rootH1_10008561 3300003323 Bacteria 7304
15 rootH1_10039458 3300003323 Bacteria 6636
16 Ga0055536_1000016 3300003781 Bacteria 222134
17 Ga0055530_10005830 3300003791 Bacteria 5713
18 Ga0065714_10064640 3300005288 Bacteria 26501
19 Ga0070658_10000045 3300005327 Bacteria 130728
20 Ga0070658_10024686 3300005327 Bacteria 4820
21 Ga0070676_10000440 3300005328 Bacteria 19779
22 Ga0070680_100023720 3300005336 Bacteria 4896
23 Ga0068868_100031158 3300005338 Bacteria 4094
24 Ga0070660_100010017 3300005339 Bacteria 6684
25 Ga0070660_100015819 3300005339 Bacteria 5459
26 Ga0070671_100002771 3300005355 Bacteria 13618
27 Ga0070674_100036781 3300005356 Bacteria 3289
28 Ga0070673_100000911 3300005364 Bacteria 16687
29 Ga0070659_100000188 3300005366 Bacteria 47486
30 Ga0070663_100001759 3300005455 Bacteria 12053
31 Ga0070678_100042239 3300005456 Bacteria 3240
32 Ga0070662_100006349 3300005457 Bacteria 7616
33 Ga0070681_10009906 3300005458 Bacteria 9390
34 Ga0068853_100010180 3300005539 Bacteria 7600
35 Ga0068853_100062374 3300005539 Bacteria 3226
36 Ga0070665_100000034 3300005548 Bacteria 324289
37 Ga0068855_100000927 3300005563 Bacteria 36472
38 Ga0068855_100005512 3300005563 Bacteria 15446
39 Ga0068855_100098029 3300005563 Bacteria 3377
40 Ga0068856_100000275 3300005614 Bacteria 55981
41 Ga0068856_100025437 3300005614 Bacteria 5774
42 Ga0068852_100002097 3300005616 Bacteria 13635
43 Ga0075366_10001288 3300006195 Bacteria 12501
44 Ga0075366_10027150 3300006195 Bacteria 3358
45 Ga0068871_100000674 3300006358 Bacteria 23358
46 Ga0105244_10047975 3300009036 Bacteria 2187
47 Ga0105240_10000103 3300009093 Bacteria 172981
48 Ga0105240_10004401 3300009093 Bacteria 21482
49 Ga0105240_10020923 3300009093 Bacteria 8711
50 Ga0105240_10065227 3300009093 Bacteria 4521
51 Ga0105241_10002850 3300009174 Bacteria 12909
52 Ga0105241_10016798 3300009174 Bacteria 5372
53 Ga0105242_10024058 3300009176 Bacteria 4808
54 Ga0105237_10000167 3300009545 Bacteria 92638
55 Ga0105237_10001530 3300009545 Bacteria 30283
56 Ga0105237_10001570 3300009545 Bacteria 29798
57 Ga0105237_10014166 3300009545 Bacteria 8347
58 Ga0105237_10015491 3300009545 Bacteria 7934
59 Ga0105238_10018039 3300009551 Bacteria 7173
60 Ga0105239_10000059 3300010375 Bacteria 155685
61 Ga0105239_10001792 3300010375 Bacteria 28226
62 Ga0105239_10003368 3300010375 Bacteria 19625
63 Ga0105239_10006343 3300010375 Bacteria 13749
64 Ga0105239_10006801 3300010375 Bacteria 13196
65 Ga0105239_10011135 3300010375 Bacteria 10040
66 Ga0157373_10000223 3300013100 Bacteria 46516
67 Ga0157373_10006242 3300013100 Bacteria 8906
68 Ga0157373_10019258 3300013100 Bacteria 4970
69 Ga0157371_10000027 3300013102 Bacteria 269243
70 Ga0157371_10000805 3300013102 Bacteria 35999
71 Ga0157370_10000084 3300013104 Bacteria 104159
72 Ga0157370_10000961 3300013104 Bacteria 36550
73 Ga0157370_10030279 3300013104 Bacteria 5304
74 Ga0157369_10000169 3300013105 Bacteria 91977
75 Ga0157369_10001449 3300013105 Bacteria 29101
76 Ga0157374_10001036 3300013296 Bacteria 24103
77 Ga0157374_10003671 3300013296 Bacteria 12902
78 Ga0157374_10004922 3300013296 Bacteria 11210
79 Ga0157378_10022024 3300013297 Bacteria 5606
80 Ga0163162_10000116 3300013306 Bacteria 70911
81 Ga0163162_10000349 3300013306 Bacteria 42017
82 Ga0163162_10021163 3300013306 Bacteria 6398
83 Ga0157372_10000109 3300013307 Bacteria 86749
84 Ga0157372_10003720 3300013307 Bacteria 16387
85 Ga0157372_10012261 3300013307 Bacteria 9128
86 Ga0157375_10129568 3300013308 Bacteria 2641
87 Ga0157380_10032575 3300014326 Bacteria 4011
88 Ga0182008_10000631 3300014497 Bacteria 25814
89 Ga0182008_10000840 3300014497 Bacteria 21424
90 Ga0182008_10016873 3300014497 Bacteria 3788
91 Ga0182006_1000236 3300015261 Bacteria 52217
92 Ga0182006_1000346 3300015261 Bacteria 39502
93 Ga0182006_1000532 3300015261 Bacteria 28917
94 Ga0182007_10000016 3300015262 Bacteria 202375
95 Ga0182007_10011881 3300015262 Bacteria 3370
96 Ga0182007_10025490 3300015262 Bacteria 2060
97 Ga0183373_1012 3300015682 Bacteria 118834
98 Ga0163161_10000281 3300017792 Bacteria 44484
99 Ga0163161_10000768 3300017792 Bacteria 25285
100 Ga0163161_10003150 3300017792 Bacteria 11638
101 Ga0163161_10003802 3300017792 Bacteria 10582
102 Ga0163161_10009476 3300017792 Bacteria 6740
103 Ga0207427_100519 3300025231 Bacteria 20335
104 Ga0209437_100010 3300025233 Bacteria 838447
105 Ga0209437_100169 3300025233 Bacteria 142584
106 Ga0207425_1000008 3300025245 Bacteria 618024
107 Ga0209026_1000646 3300025250 Bacteria 21440
108 Ga0209026_1001754 3300025250 Bacteria 8984
109 Ga0209026_1005165 3300025250 Bacteria 3589
110 Ga0209129_1000040 3300025258 Bacteria 313043
111 Ga0209233_1000017 3300025261 Bacteria 898076
112 Ga0209676_1000106 3300025292 Bacteria 222576
113 Ga0209025_1000020 3300025294 Bacteria 618024
114 Ga0209758_1000022 3300025297 Bacteria 618024
115 Ga0209050_1000456 3300025298 Bacteria 73296
116 Ga0207647_10000238 3300025904 Bacteria 45001
117 Ga0207645_10000169 3300025907 Bacteria 51953
118 Ga0207705_10000080 3300025909 Bacteria 119562
119 Ga0207705_10028598 3300025909 Bacteria 3974
120 Ga0207695_10000019 3300025913 Bacteria 732137
121 Ga0207695_10020922 3300025913 Bacteria 7477
122 Ga0207695_10121873 3300025913 Bacteria 2574
123 Ga0207695_10122260 3300025913 Bacteria 2570
124 Ga0207671_10000603 3300025914 Bacteria 47713
125 Ga0207671_10002601 3300025914 Bacteria 19061
126 Ga0207671_10004870 3300025914 Bacteria 12631
127 Ga0207671_10028533 3300025914 Bacteria 4169
128 Ga0207671_10087245 3300025914 Bacteria 2346
129 Ga0207657_10017621 3300025919 Bacteria 6842
130 Ga0207657_10088104 3300025919 Bacteria 2595
131 Ga0207644_10006997 3300025931 Bacteria 7346
132 Ga0207690_10037197 3300025932 Bacteria 3159
133 Ga0207706_10000306 3300025933 Bacteria 53202
134 Ga0207704_10000153 3300025938 Bacteria 37136
135 Ga0207667_10000015 3300025949 Bacteria 417534
136 Ga0207667_10019919 3300025949 Bacteria 7475
137 Ga0207667_10052221 3300025949 Bacteria 4306
138 Ga0207677_10011034 3300026023 Bacteria 5135
139 Ga0207639_10008430 3300026041 Bacteria 7063
140 Ga0207639_10019290 3300026041 Bacteria 4862
141 Ga0207678_10006979 3300026067 Bacteria 10025
142 Ga0207702_10000420 3300026078 Bacteria 48565
143 Ga0207702_10024367 3300026078 Bacteria 5020
144 Ga0207648_10000123 3300026089 Bacteria 76156
145 Ga0207683_10062747 3300026121 Bacteria 3273
146 Ga0207698_10091595 3300026142 Bacteria 2489
147 Ga0268266_10000111 3300028379 Bacteria 169743
148 Ga0307517_10005863 3300028786 Bacteria 18351
149 Ga0307515_10005328 3300028794 Bacteria 26136
150 Ga0307515_10009352 3300028794 Bacteria 18961
151 Ga0307515_10054231 3300028794 Bacteria 5890
152 Ga0307515_10134455 3300028794 Bacteria 2699
153 Ga0265338_10032888 3300028800 Bacteria 5048
154 Ga0307405_10000025 3300031731 Bacteria 123095
155 Ga0307407_10000016 3300031903 Bacteria 141499
156 Ga0307409_100016771 3300031995 Bacteria 4860
157 Ga0307416_100000036 3300032002 Bacteria 141505
158 Ga0307414_10010950 3300032004 Bacteria 5296
159 Ga0307507_10000034 3300033179 Bacteria 188697
160 Ga0307510_10000733 3300033180 Bacteria 33678
161 Ga0395899_0000001 3300037312 Bacteria 1750322
162 Ga0395899_0000289 3300037312 Bacteria 64799
163 Ga0395899_0002667 3300037312 Bacteria 14392
164 Ga0395900_0000095 3300037418 Bacteria 164383
165 Ga0395900_0000370 3300037418 Bacteria 64745
166 Ga0395898_0007663 3300037466 Bacteria 11463
167 Ga0395905_0000529 3300037471 Bacteria 52320
168 Ga0395905_0002186 3300037471 Bacteria 22096
169 Ga0395901_0002303 3300038443 Bacteria 19465
170 Ga0395901_0013745 3300038443 Bacteria 8228
171 Ga0436361_0673487 3300039447 Bacteria 2924
172 Ga0439448_0002688 3300042005 Bacteria 4857
173 Ga0466966_0070205 3300044684 Bacteria 2196
174 Ga0466961_0004573 3300044693 Bacteria 8684
175 Ga0466958_0045353 3300045836 Bacteria 2651
176 Ga0495650_0000127 3300046471 Bacteria 177276
177 Ga0495585_0000294 3300046492 Bacteria 50289
178 Ga0495585_0001550 3300046492 Bacteria 17823
179 Ga0495596_0008104 3300046500 Bacteria 4691
180 Ga0495606_0000035 3300046507 Bacteria 243820
181 Ga0495606_0028727 3300046507 Bacteria 3917
182 Ga0495606_0085452 3300046507 Bacteria 1952
183 Ga0495610_0000039 3300046512 Bacteria 166799
184 Ga0495610_0000103 3300046512 Bacteria 98502
185 Ga0495610_0007763 3300046512 Bacteria 7080
186 Ga0495616_0003500 3300046513 Bacteria 10042
187 Ga0495637_0044975 3300046520 Bacteria 1876
188 Ga0495648_0003548 3300046524 Bacteria 13649
189 Ga0495633_0000027 3300046558 Bacteria 204613
190 Ga0495633_0003402 3300046558 Bacteria 10630
191 Ga0495668_0000010 3300046616 Bacteria 487308
192 Ga0495625_0000144 3300046660 Bacteria 109247
193 Ga0495625_0000576 3300046660 Bacteria 53723
194 Ga0495625_0000715 3300046660 Bacteria 46840
195 Ga0495625_0015504 3300046660 Bacteria 6035
196 Ga0495625_0064594 3300046660 Bacteria 2581
197 Ga0495661_0004960 3300046665 Bacteria 9512
198 Ga0495661_0005257 3300046665 Bacteria 9210
199 Ga0495649_0000385 3300046694 Bacteria 38373
200 Ga0495687_000264 3300047443 Bacteria 70552
201 Ga0495686_0000113 3300047472 Bacteria 168307
202 Ga0495686_0002235 3300047472 Bacteria 18711
203 Ga0496122_0000837 3300048925 Bacteria 58147
204 Ga0496125_0033596 3300048928 Bacteria 4536
205 Ga0495678_003841 3300049459 Bacteria 9041
206 nmdc:mga0k408_2882_c1 3300050493 Bacteria 9119
207 nmdc:mga0k408_829_c1 3300050493 Bacteria 17023
208 nmdc:mga08y16_55165_c1 3300050511 Bacteria 4153
209 Ga0500608_007395 3300053122 Bacteria 4541
210 Ga0500608_007673 3300053122 Bacteria 4480
211 Ga0500618_000012 3300053125 Bacteria 185382
212 Ga0500616_0000004 3300053153 Bacteria 1002714
213 Ga0500622_0001600 3300053156 Bacteria 17790
214 Ga0500624_001214 3300053157 Bacteria 4629

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053153 Ga0500616_0000004 Ga0500616_0000004_982604_984280 528
2 3300037418 Ga0395900_0000095 Ga0395900_0000095_37619_39340 548
3 iso_pu_bacteria 2849281842 2849285157 553
4 3300053157 Ga0500624_001214 Ga0500624_001214_1340_3046 554
5 3300037471 Ga0395905_0002186 Ga0395905_0002186_17551_19260 555
6 3300038443 Ga0395901_0013745 Ga0395901_0013745_4702_6411 555
7 3300046660 Ga0495625_0064594 Ga0495625_0064594_322_2037 556
8 3300049459 Ga0495678_003841 Ga0495678_003841_7098_8813 556
9 3300046665 Ga0495661_0005257 Ga0495661_0005257_377_2092 560
10 3300047472 Ga0495686_0002235 Ga0495686_0002235_14419_16146 561
11 iso_pu_bacteria 2852623160 2852624628 565
12 iso_pu_bacteria 2884933994 2884936489 565
13 3300003323 rootH1_10039458 rootH1_100394582 566
14 3300009093 Ga0105240_10000103 Ga0105240_1000010386 566
15 3300009174 Ga0105241_10002850 Ga0105241_100028509 566
16 3300009545 Ga0105237_10000167 Ga0105237_100001679 566
17 3300010375 Ga0105239_10006343 Ga0105239_100063439 566
18 3300025913 Ga0207695_10000019 Ga0207695_10000019501 566
19 3300025914 Ga0207671_10000603 Ga0207671_1000060332 566
20 iso_pu_bacteria 2919437846 2919438455 566
21 3300002737 JGI25162J39368_1000059 JGI25162J39368_100005932 567
22 3300009545 Ga0105237_10014166 Ga0105237_100141667 567
23 3300010375 Ga0105239_10001792 Ga0105239_100017928 567
24 3300025233 Ga0209437_100169 Ga0209437_100169108 567
25 3300025914 Ga0207671_10004870 Ga0207671_1000487011 567
26 3300003323 rootH1_10008561 rootH1_100085613 568
27 3300010375 Ga0105239_10003368 Ga0105239_1000336814 568
28 3300013100 Ga0157373_10000223 Ga0157373_1000022333 568
29 3300013307 Ga0157372_10003720 Ga0157372_1000372010 568
30 3300025250 Ga0209026_1001754 Ga0209026_10017543 568
31 3300037312 Ga0395899_0000001 Ga0395899_0000001_646138_647844 568
32 iso_pu_bacteria 2928078545 2928083599 568
33 iso_pu_bacteria 2928147474 2928151141 568
34 3300006195 Ga0075366_10027150 Ga0075366_100271503 569
35 3300025250 Ga0209026_1000646 Ga0209026_100064618 569
36 3300050493 nmdc:mga0k408_829_c1 nmdc:mga0k408_829_c1_13815_15527 569
37 iso_pu_bacteria 2738541284 2738762067 569
38 3300003320 rootH2_10146773 rootH2_101467732 570
39 3300010375 Ga0105239_10011135 Ga0105239_100111354 570
40 3300013100 Ga0157373_10019258 Ga0157373_100192582 570
41 3300028794 Ga0307515_10134455 Ga0307515_101344552 570
42 3300046513 Ga0495616_0003500 Ga0495616_0003500_2323_4038 570
43 3300047472 Ga0495686_0000113 Ga0495686_0000113_5412_7124 570
44 3300053156 Ga0500622_0001600 Ga0500622_0001600_17_1732 570
45 iso_pu_bacteria 2738543023 2739301953 570
46 3300003320 rootH2_10006878 rootH2_100068785 571
47 3300003320 rootH2_10008353 rootH2_1000835312 571
48 3300005364 Ga0070673_100000911 Ga0070673_10000091113 571
49 3300005457 Ga0070662_100006349 Ga0070662_1000063492 571
50 3300005539 Ga0068853_100010180 Ga0068853_1000101804 571
51 3300005548 Ga0070665_100000034 Ga0070665_100000034324 571
52 3300005563 Ga0068855_100005512 Ga0068855_1000055122 571
53 3300009036 Ga0105244_10047975 Ga0105244_100479752 571
54 3300009093 Ga0105240_10004401 Ga0105240_100044016 571
55 3300009093 Ga0105240_10020923 Ga0105240_100209232 571
56 3300013296 Ga0157374_10001036 Ga0157374_1000103618 571
57 3300013306 Ga0163162_10000116 Ga0163162_1000011640 571
58 3300025904 Ga0207647_10000238 Ga0207647_1000023834 571
59 3300025913 Ga0207695_10020922 Ga0207695_100209223 571
60 3300025913 Ga0207695_10121873 Ga0207695_101218732 571
61 3300025933 Ga0207706_10000306 Ga0207706_100003064 571
62 3300025949 Ga0207667_10019919 Ga0207667_100199195 571
63 3300025949 Ga0207667_10052221 Ga0207667_100522213 571
64 3300026041 Ga0207639_10008430 Ga0207639_100084302 571
65 3300028379 Ga0268266_10000111 Ga0268266_10000111150 571
66 3300039447 Ga0436361_0673487 Ga0436361_0673487_999_2717 571
67 3300045836 Ga0466958_0045353 Ga0466958_0045353_29_1747 571
68 3300046660 Ga0495625_0015504 Ga0495625_0015504_1792_3510 571
69 3300005327 Ga0070658_10000045 Ga0070658_1000004544 572
70 3300005328 Ga0070676_10000440 Ga0070676_1000044012 572
71 3300005338 Ga0068868_100031158 Ga0068868_1000311582 572
72 3300005339 Ga0070660_100010017 Ga0070660_1000100173 572
73 3300005339 Ga0070660_100015819 Ga0070660_1000158192 572
74 3300005355 Ga0070671_100002771 Ga0070671_1000027715 572
75 3300005366 Ga0070659_100000188 Ga0070659_10000018812 572
76 3300005456 Ga0070678_100042239 Ga0070678_1000422392 572
77 3300005539 Ga0068853_100062374 Ga0068853_1000623742 572
78 3300005563 Ga0068855_100000927 Ga0068855_1000009273 572
79 3300005614 Ga0068856_100000275 Ga0068856_10000027527 572
80 3300005616 Ga0068852_100002097 Ga0068852_1000020977 572
81 3300006358 Ga0068871_100000674 Ga0068871_1000006742 572
82 3300009174 Ga0105241_10016798 Ga0105241_100167982 572
83 3300009176 Ga0105242_10024058 Ga0105242_100240583 572
84 3300009545 Ga0105237_10015491 Ga0105237_100154913 572
85 3300009551 Ga0105238_10018039 Ga0105238_100180393 572
86 3300013296 Ga0157374_10003671 Ga0157374_100036712 572
87 3300013296 Ga0157374_10004922 Ga0157374_100049227 572
88 3300013297 Ga0157378_10022024 Ga0157378_100220242 572
89 3300013306 Ga0163162_10021163 Ga0163162_100211633 572
90 3300017792 Ga0163161_10009476 Ga0163161_100094764 572
91 3300025907 Ga0207645_10000169 Ga0207645_1000016913 572
92 3300025909 Ga0207705_10000080 Ga0207705_1000008083 572
93 3300025914 Ga0207671_10002601 Ga0207671_100026015 572
94 3300025914 Ga0207671_10087245 Ga0207671_100872452 572
95 3300025919 Ga0207657_10017621 Ga0207657_100176213 572
96 3300025919 Ga0207657_10088104 Ga0207657_100881042 572
97 3300025931 Ga0207644_10006997 Ga0207644_100069972 572
98 3300025932 Ga0207690_10037197 Ga0207690_100371972 572
99 3300025938 Ga0207704_10000153 Ga0207704_1000015329 572
100 3300025949 Ga0207667_10000015 Ga0207667_10000015190 572
101 3300026023 Ga0207677_10011034 Ga0207677_100110343 572
102 3300026041 Ga0207639_10019290 Ga0207639_100192901 572
103 3300026078 Ga0207702_10000420 Ga0207702_1000042026 572
104 3300026089 Ga0207648_10000123 Ga0207648_1000012342 572
105 3300026121 Ga0207683_10062747 Ga0207683_100627472 572
106 3300026142 Ga0207698_10091595 Ga0207698_100915951 572
107 3300028786 Ga0307517_10005863 Ga0307517_1000586314 572
108 3300033180 Ga0307510_10000733 Ga0307510_100007335 572
109 3300037312 Ga0395899_0000289 Ga0395899_0000289_44327_46048 572
110 3300037418 Ga0395900_0000370 Ga0395900_0000370_44911_46632 572
111 3300037466 Ga0395898_0007663 Ga0395898_0007663_8370_10091 572
112 3300037471 Ga0395905_0000529 Ga0395905_0000529_5919_7640 572
113 3300038443 Ga0395901_0002303 Ga0395901_0002303_2174_3895 572
114 3300042005 Ga0439448_0002688 Ga0439448_0002688_2960_4681 572
115 3300046500 Ga0495596_0008104 Ga0495596_0008104_2186_3907 572
116 3300046507 Ga0495606_0085452 Ga0495606_0085452_74_1795 572
117 3300046665 Ga0495661_0004960 Ga0495661_0004960_61_1779 572
118 3300028794 Ga0307515_10054231 Ga0307515_100542314 573
119 3300015262 Ga0182007_10011881 Ga0182007_100118812 574
120 3300013308 Ga0157375_10129568 Ga0157375_101295682 576
121 3300053122 Ga0500608_007673 Ga0500608_007673_1243_2976 576
122 3300013100 Ga0157373_10006242 Ga0157373_100062423 577
123 3300013105 Ga0157369_10000169 Ga0157369_1000016923 577
124 3300015262 Ga0182007_10000016 Ga0182007_1000001611 577
125 3300017792 Ga0163161_10000768 Ga0163161_1000076813 577
126 3300017792 Ga0163161_10003150 Ga0163161_100031503 577
127 3300015261 Ga0182006_1000346 Ga0182006_100034615 578
128 3300015682 Ga0183373_1012 Ga0183373_101220 578
129 3300015261 Ga0182006_1000532 Ga0182006_10005325 580
130 3300009545 Ga0105237_10001570 Ga0105237_100015708 581
131 3300013104 Ga0157370_10000084 Ga0157370_1000008431 581
132 3300014497 Ga0182008_10000631 Ga0182008_1000063121 581
133 3300015261 Ga0182006_1000236 Ga0182006_100023640 581
134 3300017792 Ga0163161_10003802 Ga0163161_100038027 581
135 3300048925 Ga0496122_0000837 Ga0496122_0000837_49471_51258 581
136 3300048928 Ga0496125_0033596 Ga0496125_0033596_1286_3073 581
137 iso_pu_bacteria 2738541283 2738758855 581
138 3300014497 Ga0182008_10016873 Ga0182008_100168732 582
139 3300015262 Ga0182007_10025490 Ga0182007_100254902 582
140 3300002773 JGI25152J39213_1000006 JGI25152J39213_1000006125 583
141 3300002774 JGI25150J39212_1000005 JGI25150J39212_1000005109 583
142 3300003187 JGI25151J46595_10000004 JGI25151J46595_10000004277 583
143 3300003215 JGI25153J46596_10000004 JGI25153J46596_10000004277 583
144 3300005288 Ga0065714_10064640 Ga0065714_1006464011 583
145 3300005563 Ga0068855_100098029 Ga0068855_1000980292 583
146 3300013102 Ga0157371_10000027 Ga0157371_10000027227 583
147 3300013104 Ga0157370_10000961 Ga0157370_100009613 583
148 3300013104 Ga0157370_10030279 Ga0157370_100302793 583
149 3300013306 Ga0163162_10000349 Ga0163162_1000034911 583
150 3300014326 Ga0157380_10032575 Ga0157380_100325752 583
151 3300014497 Ga0182008_10000840 Ga0182008_100008406 583
152 3300025245 Ga0207425_1000008 Ga0207425_1000008160 583
153 3300025258 Ga0209129_1000040 Ga0209129_1000040105 583
154 3300025294 Ga0209025_1000020 Ga0209025_1000020160 583
155 3300025297 Ga0209758_1000022 Ga0209758_1000022160 583
156 3300046512 Ga0495610_0000039 Ga0495610_0000039_144905_146713 583
157 3300050511 nmdc:mga08y16_55165_c1 nmdc:mga08y16_55165_c1_798_2591 583
158 iso_pu_bacteria 2739367656 2739617499 583
159 iso_pu_bacteria 2818991437 2819550188 583
160 iso_pu_bacteria 2852623160 2852623985 583
161 iso_pu_bacteria 2857627736 2857630438 583
162 iso_pu_bacteria 2884933994 2884937112 583
163 iso_pu_bacteria 2904445276 2904449825 583
164 iso_pu_bacteria 2910245624 2910249594 583
165 3300003781 Ga0055536_1000016 Ga0055536_100001637 584
166 3300003791 Ga0055530_10005830 Ga0055530_100058303 584
167 3300017792 Ga0163161_10000281 Ga0163161_100002817 584
168 3300025292 Ga0209676_1000106 Ga0209676_1000106167 584
169 3300025298 Ga0209050_1000456 Ga0209050_100045637 584
170 3300031731 Ga0307405_10000025 Ga0307405_1000002569 584
171 3300031903 Ga0307407_10000016 Ga0307407_1000001641 584
172 3300031995 Ga0307409_100016771 Ga0307409_1000167712 584
173 3300032002 Ga0307416_100000036 Ga0307416_10000003641 584
174 3300032004 Ga0307414_10010950 Ga0307414_100109503 584
175 iso_pu_bacteria 2739367651 2739587330 584
176 iso_pu_bacteria 2842722452 2842726777 584
177 iso_pu_bacteria 2842909656 2842911618 584
178 iso_pu_bacteria 2945997725 2946002909 584
179 iso_pu_bacteria 2954016120 2954019774 584
180 iso_pu_bacteria 2739367663 2739647944 585
181 3300046512 Ga0495610_0000103 Ga0495610_0000103_18180_20072 586
182 iso_pu_bacteria 2585427687 2586210207 586
183 iso_pu_bacteria 2738541302 2738854234 586
184 3300053122 Ga0500608_007395 Ga0500608_007395_1308_3110 588
185 3300010375 Ga0105239_10000059 Ga0105239_1000005953 591
186 3300005336 Ga0070680_100023720 Ga0070680_1000237201 594
187 3300005455 Ga0070663_100001759 Ga0070663_1000017591 594
188 3300005458 Ga0070681_10009906 Ga0070681_100099063 594
189 3300013105 Ga0157369_10001449 Ga0157369_100014498 594
190 3300025250 Ga0209026_1005165 Ga0209026_10051653 594
191 3300026067 Ga0207678_10006979 Ga0207678_100069791 594
192 3300037312 Ga0395899_0002667 Ga0395899_0002667_4269_6068 594
193 3300044693 Ga0466961_0004573 Ga0466961_0004573_1535_3325 594
194 3300013102 Ga0157371_10000805 Ga0157371_1000080527 598
195 3300013307 Ga0157372_10000109 Ga0157372_1000010963 598
196 3300044684 Ga0466966_0070205 Ga0466966_0070205_294_2108 598
197 3300046558 Ga0495633_0000027 Ga0495633_0000027_32091_33965 599
198 3300009545 Ga0105237_10001530 Ga0105237_1000153026 600
199 3300025914 Ga0207671_10028533 Ga0207671_100285332 600
200 3300028794 Ga0307515_10009352 Ga0307515_1000935213 600
201 3300046471 Ga0495650_0000127 Ga0495650_0000127_129432_131234 600
202 3300046512 Ga0495610_0007763 Ga0495610_0007763_4400_6202 600
203 3300046558 Ga0495633_0003402 Ga0495633_0003402_395_2197 600
204 3300046694 Ga0495649_0000385 Ga0495649_0000385_9587_11389 600
205 iso_pu_bacteria 2599185184 2599480156 600
206 iso_pu_bacteria 2932082852 2932084438 600
207 3300005356 Ga0070674_100036781 Ga0070674_1000367811 601
208 3300009093 Ga0105240_10065227 Ga0105240_100652272 601
209 3300025913 Ga0207695_10122260 Ga0207695_101222602 601
210 3300028794 Ga0307515_10005328 Ga0307515_1000532822 601
211 3300053125 Ga0500618_000012 Ga0500618_000012_34782_36590 601
212 3300006195 Ga0075366_10001288 Ga0075366_1000128810 602
213 3300033179 Ga0307507_10000034 Ga0307507_10000034159 602
214 3300046660 Ga0495625_0000576 Ga0495625_0000576_29210_31021 602
215 3300050493 nmdc:mga0k408_2882_c1 nmdc:mga0k408_2882_c1_4696_6507 602
216 3300001990 JGI24737J22298_10002092 JGI24737J22298_100020924 604
217 3300002067 JGI24735J21928_10000008 JGI24735J21928_1000000873 604
218 3300003214 JGI25165J46597_1002482 JGI25165J46597_10024824 604
219 3300003316 rootH1_10064296 rootH1_100642962 604
220 3300003323 rootH1_10003476 rootH1_100034764 604
221 3300005327 Ga0070658_10024686 Ga0070658_100246862 604
222 3300005614 Ga0068856_100025437 Ga0068856_1000254373 604
223 3300010375 Ga0105239_10006801 Ga0105239_100068013 604
224 3300013307 Ga0157372_10012261 Ga0157372_100122618 604
225 3300025231 Ga0207427_100519 Ga0207427_10051915 604
226 3300025233 Ga0209437_100010 Ga0209437_100010102 604
227 3300025261 Ga0209233_1000017 Ga0209233_1000017115 604
228 3300025909 Ga0207705_10028598 Ga0207705_100285982 604
229 3300026078 Ga0207702_10024367 Ga0207702_100243673 604
230 3300028800 Ga0265338_10032888 Ga0265338_100328882 604
231 3300046492 Ga0495585_0000294 Ga0495585_0000294_14519_16333 604
232 3300046492 Ga0495585_0001550 Ga0495585_0001550_9537_11354 604
233 3300046507 Ga0495606_0000035 Ga0495606_0000035_163613_165427 604
234 3300046507 Ga0495606_0028727 Ga0495606_0028727_23_1837 604
235 3300046520 Ga0495637_0044975 Ga0495637_0044975_13_1827 604
236 3300046524 Ga0495648_0003548 Ga0495648_0003548_6517_8334 604
237 3300046616 Ga0495668_0000010 Ga0495668_0000010_214078_215895 604
238 3300046660 Ga0495625_0000144 Ga0495625_0000144_26652_28466 604
239 3300046660 Ga0495625_0000715 Ga0495625_0000715_12662_14479 604
240 3300047443 Ga0495687_000264 Ga0495687_000264_41574_43388 604

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10438

Cyc-maltodext_C

Cyclo-malto-dextrinase C-terminal domain

543

613

0.9

PF00128

Alpha-amylase

Alpha amylase, catalytic domain

90

467

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dhu-assembly3.cif.gz_C crystal structure of an alpha-amylase from lactobacillus plantarum 0.8086 38 604
1j0i-assembly1.cif.gz_B crystal structure of neopullulanase complex with panose 0.8068 41 603
5a2c-assembly1.cif.gz_A crystal structure of anoxybacillus alpha-amylase provides insights into a new glycosyl hydrolase subclass 0.8012 34 603
1gvi-assembly1.cif.gz_A thermus maltogenic amylase in complex with beta-cd 0.8006 38 603
4gkl-assembly1.cif.gz_A crystal structure of a noncanonic maltogenic alpha-amylase amyb from thermotoga neapolitana 0.7991 41 604
ID Description Score Start End Superfamily
1ji1A03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8519 502 604 2.60.40.1180
5a2cA02 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8443 505 603 2.60.40.1180
1ji1A03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8432 502 604 2.60.40.1180
3a6oA04 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.825 508 603 2.60.40.1180
3ttsA03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8167 524 603 2.60.40.1180
ID Description Score Start End GO Terms
AF-A0A0B8QLB2-F1-model_v4 Alpha-amylase (EC 3.2.1.1) 0.9802 305 442 GO:0004556
GO:0005975
AF-A0A519UQM9-F1-model_v4 Alpha-amylase 0.9772 44 604 GO:0004556
GO:0009313
GO:0043169
AF-A0A519UY15-F1-model_v4 Alpha-amylase 0.9755 242 604 GO:0004556
GO:0009313
AF-A0A519NN70-F1-model_v4 deleted 0.9747 34 530
AF-A0A519UQM9-F1-model_v4 Alpha-amylase 0.9721 44 604 GO:0004556
GO:0009313
GO:0043169

Feature Viewer

pLDDT pTM Quality
86.49 0.88 High
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Predicted Structure (AlphaFold2)

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