F351947

General Info

Members Datasets Scaffolds Average Seq Length
239 156 227 326

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10044658|Ga0157372_100446581
Length 370
Sequence LNDQFSLLFVTTNLFRFRNFLGMELRQTTGLVTPFFFVKFECMKRISILVPKGAILGSLEGTRQLFTQVNYFFKDRDLPIPFDVQLVGLTAATPLTGGLFTAHNHVVLNEATKTDLIIIPAFDGDVQQAIENNKDFIPWIVEQYRNGAEVASLCMGAFLLASTGLLQGKKCATHWMAANDFRRMFPDVQLVTEKIITDEQRIYSSGGAFSYLNLILYLIEKYAGREMAILCAKVFAIEIERDSQLSFTIFQGQKDHGDDVVKEAQVYIEKNYQDRMTVDQLASMLALSRRAFERRFKKATANTVNEYIQRVKMEAAKMSLESTRENVNEVMYKVGYNDTKAFRTTFKRITGLSPMEYRNKYREINERQIA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738541284 Pedobacter sp. YR016 Isolate Unclassified
3 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
4 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
5 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
6 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
7 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
8 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
9 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
10 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
11 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
12 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
13 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
14 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
15 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
16 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
17 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
18 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
19 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
22 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
23 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
24 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
25 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
26 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
27 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
28 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
29 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
30 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
31 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
32 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
33 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
34 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
35 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
36 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
37 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
38 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
39 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
40 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
41 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
42 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
43 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
44 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
45 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
46 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
62 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
63 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
64 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
65 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
68 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
87 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
88 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
89 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
90 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
91 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
92 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
93 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
96 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
97 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
98 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
99 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
100 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
101 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
102 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
103 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
104 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
105 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
106 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
107 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
108 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
109 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
110 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
111 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
112 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
113 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
114 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
115 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
116 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
119 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
120 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
121 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
122 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
127 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
128 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
129 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
130 3300049657 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought Metagenome Rhizosphere
131 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
132 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
133 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
134 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
135 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
136 3300049682 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_B_3_drought Metagenome Rhizosphere
137 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
138 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
139 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
140 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
141 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
142 3300049774 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_A_5_drought Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
148 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
149 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
150 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
151 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
152 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
153 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
154 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
155 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
156 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.98
Metatranscriptomes 0
Isolates 5.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.97
Nodule 0
Rhizoplane 0
Rhizosphere 73.64
Stem 0
Stem Tuber 0
Unclassified 13.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1307337 2162886007 Bacteria 11873
2 JGI24739J22299_10032685 3300001989 Bacteria 1788
3 JGI25162J39368_1000062 3300002737 Bacteria 135587
4 JGI25157J39369_1003241 3300002741 Unclassified 3420
5 rootH1_10001844 3300003316 Bacteria 8432
6 rootH1_10014678 3300003316 Bacteria 6641
7 rootH1_10055563 3300003316 Bacteria 3420
8 rootH2_10004884 3300003320 Bacteria 33742
9 rootH2_10241312 3300003320 Unclassified 2320
10 rootH2_10322579 3300003320 Bacteria 1725
11 rootH2_10338628 3300003320 Bacteria 1171
12 rootL2_10024564 3300003322 Unclassified 2961
13 rootL2_10060312 3300003322 Bacteria 14882
14 rootL2_10147489 3300003322 Bacteria 5433
15 rootL2_10277121 3300003322 Bacteria 2339
16 rootL2_10307183 3300003322 Bacteria 2916
17 rootL2_10375019 3300003322 Bacteria 1343
18 rootH1_10001058 3300003323 Bacteria 37224
19 rootH1_10012724 3300003323 Bacteria 1510
20 rootH1_10023758 3300003323 Bacteria 38885
21 rootH1_10076350 3300003323 Bacteria 6007
22 rootH1_10169682 3300003323 Bacteria 9309
23 Ga0055526_1012971 3300003771 Bacteria 3573
24 Ga0055528_1000227 3300003790 Bacteria 46980
25 Ga0055530_10001448 3300003791 Bacteria 17330
26 Ga0055531_10011692 3300003794 Bacteria 4203
27 Ga0055531_10013545 3300003794 Unclassified 3750
28 Ga0065165_1000514 3300005262 Bacteria 59489
29 Ga0065165_1002890 3300005262 Bacteria 13208
30 Ga0065714_10002913 3300005288 Bacteria 23390
31 Ga0065714_10004916 3300005288 Bacteria 9550
32 Ga0065714_10029884 3300005288 Bacteria 1651
33 Ga0065714_10081377 3300005288 Bacteria 2379
34 Ga0065704_10000290 3300005289 Bacteria 44457
35 Ga0070658_10036874 3300005327 Bacteria 3940
36 Ga0070658_10172299 3300005327 Bacteria 1818
37 Ga0070683_100219642 3300005329 Bacteria 1806
38 Ga0070680_100186762 3300005336 Bacteria 1746
39 Ga0068868_100234191 3300005338 Unclassified 1541
40 Ga0070660_100060929 3300005339 Bacteria 2930
41 Ga0070691_10007110 3300005341 Bacteria 5133
42 Ga0070668_100273974 3300005347 Bacteria 1407
43 Ga0070675_100027476 3300005354 Bacteria 4571
44 Ga0070659_100005481 3300005366 Bacteria 9118
45 Ga0070678_100062040 3300005456 Bacteria 2758
46 Ga0070698_100165115 3300005471 Unclassified 2157
47 Ga0070679_100009536 3300005530 Bacteria 9183
48 Ga0070684_100024633 3300005535 Bacteria 5050
49 Ga0070665_100009647 3300005548 Bacteria 9762
50 Ga0070665_100040420 3300005548 Bacteria 4688
51 Ga0068855_100000280 3300005563 Bacteria 62945
52 Ga0068855_100002627 3300005563 Bacteria 22138
53 Ga0068855_100171011 3300005563 Viruses 2461
54 Ga0068856_100064647 3300005614 Unclassified 3615
55 Ga0068856_100071340 3300005614 Bacteria 3438
56 Ga0068864_100179352 3300005618 Unclassified 1936
57 Ga0075366_10003771 3300006195 Bacteria 8056
58 Ga0097621_100316107 3300006237 Bacteria 1382
59 Ga0075428_100473081 3300006844 Bacteria 1341
60 Ga0105240_10010762 3300009093 Bacteria 12829
61 Ga0105240_10085605 3300009093 Bacteria 3862
62 Ga0105240_10365658 3300009093 Bacteria 1633
63 Ga0111539_10028750 3300009094 Bacteria 6780
64 Ga0105241_10013982 3300009174 Bacteria 5885
65 Ga0105237_10001692 3300009545 Bacteria 28560
66 Ga0105237_10002056 3300009545 Viruses 25544
67 Ga0105237_10014838 3300009545 Viruses 8130
68 Ga0105237_10033936 3300009545 Bacteria 5170
69 Ga0105237_10165609 3300009545 Bacteria 2209
70 Ga0105237_10276561 3300009545 Bacteria 1681
71 Ga0105239_10000081 3300010375 Bacteria 133686
72 Ga0105239_10001204 3300010375 Bacteria 35365
73 Ga0105239_10003037 3300010375 Bacteria 20874
74 Ga0105239_10003413 3300010375 Viruses 19478
75 Ga0105239_10030533 3300010375 Bacteria 5924
76 Ga0105239_10611409 3300010375 Bacteria 1243
77 Ga0157373_10000134 3300013100 Bacteria 58266
78 Ga0157373_10000641 3300013100 Bacteria 27467
79 Ga0157371_10000656 3300013102 Bacteria 40997
80 Ga0157371_10001180 3300013102 Bacteria 28028
81 Ga0157371_10002719 3300013102 Bacteria 16657
82 Ga0157371_10004216 3300013102 Bacteria 12652
83 Ga0157371_10043972 3300013102 Bacteria 3181
84 Ga0157371_10060081 3300013102 Unclassified 2695
85 Ga0157370_10000916 3300013104 Bacteria 37388
86 Ga0157370_10061918 3300013104 Bacteria 3550
87 Ga0157370_10313357 3300013104 Bacteria 1448
88 Ga0157370_10506048 3300013104 Bacteria 1109
89 Ga0157369_10197188 3300013105 Bacteria 2114
90 Ga0157374_10099725 3300013296 Bacteria 2783
91 Ga0157374_10294142 3300013296 Bacteria 1606
92 Ga0157378_10143988 3300013297 Bacteria 2215
93 Ga0163162_10000513 3300013306 Bacteria 35886
94 Ga0163162_10344771 3300013306 Bacteria 1622
95 Ga0157372_10000725 3300013307 Bacteria 35931
96 Ga0157372_10012283 3300013307 Bacteria 9123
97 Ga0157372_10040702 3300013307 Bacteria 5134
98 Ga0157372_10044658 3300013307 Bacteria 4911
99 Ga0157372_10073003 3300013307 Unclassified 3867
100 Ga0157380_10012577 3300014326 Bacteria 6141
101 Ga0182008_10000406 3300014497 Bacteria 33218
102 Ga0182006_1000703 3300015261 Bacteria 23183
103 Ga0163161_10080036 3300017792 Unclassified 2404
104 Ga0209437_100177 3300025233 Bacteria 135759
105 Ga0209026_1000357 3300025250 Bacteria 43020
106 Ga0209129_1006185 3300025258 Viruses 3965
107 Ga0209673_1000014 3300025273 Bacteria 537082
108 Ga0209673_1000018 3300025273 Bacteria 458281
109 Ga0209758_1004737 3300025297 Bacteria 11069
110 Ga0209050_1000693 3300025298 Bacteria 50067
111 Ga0207426_1000148 3300025302 Bacteria 190030
112 Ga0207426_1001091 3300025302 Bacteria 25153
113 Ga0209257_1000023 3300025304 Bacteria 753019
114 Ga0209257_1002351 3300025304 Bacteria 19024
115 Ga0207647_10002941 3300025904 Bacteria 12819
116 Ga0207654_10052992 3300025911 Bacteria 2340
117 Ga0207695_10019624 3300025913 Bacteria 7777
118 Ga0207671_10000189 3300025914 Bacteria 95291
119 Ga0207671_10001659 3300025914 Viruses 25316
120 Ga0207671_10015544 3300025914 Viruses 5953
121 Ga0207660_10234673 3300025917 Bacteria 1443
122 Ga0207652_10222215 3300025921 Bacteria 1702
123 Ga0207690_10000190 3300025932 Bacteria 47477
124 Ga0207661_10125288 3300025944 Bacteria 2193
125 Ga0207667_10000349 3300025949 Bacteria 62960
126 Ga0207667_10005753 3300025949 Bacteria 15129
127 Ga0207702_10000455 3300026078 Bacteria 46164
128 Ga0207702_10013873 3300026078 Bacteria 6692
129 Ga0207675_100736189 3300026118 Bacteria 997
130 Ga0268266_10004556 3300028379 Bacteria 13240
131 Ga0268266_10024016 3300028379 Bacteria 5187
132 Ga0268264_10001323 3300028381 Bacteria 23322
133 Ga0307515_10000007 3300028794 Bacteria 719669
134 Ga0307515_10000114 3300028794 Bacteria 194024
135 Ga0307515_10007071 3300028794 Bacteria 22296
136 Ga0307515_10195068 3300028794 Bacteria 1921
137 Ga0307408_100000570 3300031548 Bacteria 31760
138 Ga0307408_100000683 3300031548 Bacteria 27901
139 Ga0265313_10020066 3300031595 Bacteria 3699
140 Ga0307508_10332930 3300031616 Bacteria 1110
141 Ga0307410_10389160 3300031852 Bacteria 1124
142 Ga0307412_10000001 3300031911 Bacteria 822691
143 Ga0307412_10002515 3300031911 Bacteria 10190
144 Ga0307412_10094570 3300031911 Unclassified 2099
145 Ga0307409_100151114 3300031995 Unclassified 2016
146 Ga0307416_100151011 3300032002 Unclassified 2130
147 Ga0307414_10000802 3300032004 Bacteria 16094
148 Ga0307414_10006799 3300032004 Bacteria 6397
149 Ga0307414_10020582 3300032004 Bacteria 4115
150 Ga0307414_10112101 3300032004 Bacteria 2079
151 Ga0307414_10169917 3300032004 Unclassified 1742
152 Ga0307414_10229243 3300032004 Viruses 1530
153 Ga0307411_10002526 3300032005 Bacteria 8145
154 Ga0316583_10007300 3300032133 Bacteria 3978
155 Ga0307507_10001092 3300033179 Bacteria 60190
156 Ga0395899_0040478 3300037312 Bacteria 3484
157 Ga0395899_0041645 3300037312 Bacteria 3431
158 Ga0395900_0186156 3300037418 Bacteria 2107
159 Ga0395898_0061908 3300037466 Bacteria 3635
160 Ga0395905_0060532 3300037471 Bacteria 3541
161 Ga0395905_0321478 3300037471 Bacteria 1437
162 Ga0395901_0003458 3300038443 Bacteria 15912
163 Ga0395901_0130843 3300038443 Bacteria 2637
164 Ga0395901_0293835 3300038443 Bacteria 1685
165 Ga0439439_0028008 3300041406 Bacteria 1425
166 Ga0439466_0066212 3300041411 Bacteria 1157
167 Ga0439465_0038071 3300041413 Unclassified 1548
168 Ga0450894_001678 3300042131 Bacteria 3121
169 Ga0439434_0008418 3300042435 Bacteria 3023
170 Ga0466972_0000021 3300044658 Bacteria 196266
171 Ga0466970_0000944 3300044765 Bacteria 14045
172 Ga0495651_0129295 3300046462 Bacteria 1845
173 Ga0495585_0003586 3300046492 Bacteria 10416
174 Ga0495628_0284603 3300046516 Bacteria 1227
175 Ga0495648_0005282 3300046524 Bacteria 10786
176 Ga0495648_0050011 3300046524 Bacteria 2558
177 Ga0495609_0020297 3300046538 Bacteria 3070
178 Ga0495633_0000014 3300046558 Bacteria 261742
179 Ga0495668_0000003 3300046616 Bacteria 695023
180 Ga0495625_0000949 3300046660 Bacteria 38756
181 Ga0495625_0007363 3300046660 Bacteria 9594
182 Ga0495625_0189008 3300046660 Bacteria 1365
183 Ga0495660_0117000 3300046810 Bacteria 1353
184 Ga0495672_0006754 3300047320 Bacteria 8802
185 Ga0495672_0035087 3300047320 Unclassified 3091
186 Ga0495686_0000372 3300047472 Bacteria 72285
187 Ga0501298_019295 3300049521 Bacteria 1262
188 Ga0501033_0354753 3300049570 Unclassified 1027
189 Ga0501034_0000373 3300049571 Bacteria 76337
190 Ga0501034_0046976 3300049571 Bacteria 4361
191 Ga0501038_0029522 3300049574 Bacteria 4858
192 Ga0501040_0184243 3300049576 Bacteria 1480
193 Ga0501198_013058 3300049649 Bacteria 1254
194 Ga0501202_006555 3300049652 Bacteria 2085
195 Ga0501202_015862 3300049652 Bacteria 1455
196 Ga0501206_005683 3300049653 Bacteria 1609
197 Ga0501208_011028 3300049655 Bacteria 1294
198 Ga0501210_001395 3300049657 Bacteria 1371
199 Ga0501217_002532 3300049661 Bacteria 3609
200 Ga0501222_002339 3300049662 Bacteria 2632
201 Ga0501223_002948 3300049663 Bacteria 3734
202 Ga0501235_000577 3300049669 Bacteria 7367
203 Ga0501243_004006 3300049675 Bacteria 2198
204 Ga0501252_007417 3300049682 Bacteria 1242
205 Ga0501259_008210 3300049688 Bacteria 1679
206 Ga0501261_006535 3300049690 Bacteria 1483
207 Ga0501245_007479 3300049708 Bacteria 1545
208 Ga0501241_004878 3300049758 Bacteria 2502
209 Ga0501264_000153 3300049761 Bacteria 11021
210 Ga0501278_002143 3300049774 Bacteria 1390
211 Ga0501035_0024706 3300049822 Bacteria 5509
212 Ga0501044_0338356 3300049823 Bacteria 1426
213 nmdc:mga0k408_2260_c1 3300050493 Bacteria 10279
214 nmdc:mga05p37_68157_c1 3300050507 Unclassified 4376
215 nmdc:mga08y16_141473_c1 3300050511 Unclassified 2501
216 nmdc:mga08y16_17428_c1 3300050511 Bacteria 7563
217 Ga0500583_0056256 3300053092 Bacteria 1843
218 Ga0500651_0000102 3300053093 Bacteria 52381
219 Ga0500608_027958 3300053122 Bacteria 2659
220 Ga0500618_000061 3300053125 Bacteria 96180
221 Ga0500564_031782 3300053138 Viruses 2433
222 Ga0500568_0002647 3300053139 Bacteria 10393
223 Ga0500616_0001274 3300053153 Bacteria 25179
224 Ga0500616_0018913 3300053153 Bacteria 3891
225 Ga0500616_0045388 3300053153 Bacteria 2341
226 Ga0500627_0091516 3300053158 Bacteria 1361
227 Ga0500611_000012 3300053727 Bacteria 137782

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300025914 Ga0207671_10000189 Ga0207671_1000018945 286
2 3300053158 Ga0500627_0091516 Ga0500627_0091516_435_1328 296
3 3300010375 Ga0105239_10003037 Ga0105239_1000303716 301
4 3300009093 Ga0105240_10365658 Ga0105240_103656582 302
5 3300010375 Ga0105239_10001204 Ga0105239_1000120426 302
6 3300013297 Ga0157378_10143988 Ga0157378_101439883 302
7 3300026118 Ga0207675_100736189 Ga0207675_1007361891 303
8 3300003320 rootH2_10338628 rootH2_103386281 305
9 3300026078 Ga0207702_10000455 Ga0207702_1000045529 306
10 3300005563 Ga0068855_100000280 Ga0068855_10000028011 312
11 3300032004 Ga0307414_10020582 Ga0307414_100205823 312
12 3300041413 Ga0439465_0038071 Ga0439465_0038071_442_1386 312
13 3300046516 Ga0495628_0284603 Ga0495628_0284603_15_953 312
14 3300025949 Ga0207667_10000349 Ga0207667_1000034952 313
15 3300001989 JGI24739J22299_10032685 JGI24739J22299_100326852 317
16 3300049570 Ga0501033_0354753 Ga0501033_0354753_10_993 317
17 3300049574 Ga0501038_0029522 Ga0501038_0029522_520_1548 317
18 3300049823 Ga0501044_0338356 Ga0501044_0338356_316_1344 317
19 3300005288 Ga0065714_10029884 Ga0065714_100298842 318
20 3300003320 rootH2_10322579 rootH2_103225792 319
21 3300031616 Ga0307508_10332930 Ga0307508_103329301 319
22 3300032004 Ga0307414_10006799 Ga0307414_100067992 319
23 3300049521 Ga0501298_019295 Ga0501298_019295_39_1019 321
24 3300049652 Ga0501202_006555 Ga0501202_006555_919_1899 321
25 3300049657 Ga0501210_001395 Ga0501210_001395_138_1118 321
26 3300049761 Ga0501264_000153 Ga0501264_000153_1763_2743 321
27 iso_pu_bacteria 2738541284 2738763105 321
28 iso_pu_bacteria 2775506987 2776616353 321
29 iso_pu_bacteria 2818991460 2819681738 321
30 iso_pu_bacteria 2852627209 2852631416 321
31 iso_pu_bacteria 2884791551 2884793308 321
32 iso_pu_bacteria 2919186247 2919189524 321
33 iso_pu_bacteria 2919437846 2919441057 321
34 iso_pu_bacteria 2929177148 2929179796 321
35 iso_pu_bacteria 2939664404 2939667750 321
36 iso_pu_bacteria 2945977869 2945982219 321
37 iso_pu_bacteria 2946013367 2946018391 321
38 iso_pu_bacteria 2977232053 2977234391 321
39 3300003323 rootH1_10012724 rootH1_100127242 322
40 3300005471 Ga0070698_100165115 Ga0070698_1001651153 323
41 3300041406 Ga0439439_0028008 Ga0439439_0028008_358_1329 323
42 3300041411 Ga0439466_0066212 Ga0439466_0066212_76_1047 323
43 3300042131 Ga0450894_001678 Ga0450894_001678_18_989 323
44 3300042435 Ga0439434_0008418 Ga0439434_0008418_1094_2065 323
45 3300003316 rootH1_10001844 rootH1_100018448 324
46 3300003320 rootH2_10004884 rootH2_1000488427 324
47 3300003322 rootL2_10024564 rootL2_100245643 324
48 3300003322 rootL2_10375019 rootL2_103750191 324
49 3300003323 rootH1_10001058 rootH1_1000105812 324
50 3300003323 rootH1_10023758 rootH1_100237589 324
51 3300005341 Ga0070691_10007110 Ga0070691_100071104 324
52 3300005548 Ga0070665_100040420 Ga0070665_1000404204 324
53 3300009093 Ga0105240_10010762 Ga0105240_1001076214 324
54 3300009545 Ga0105237_10001692 Ga0105237_1000169222 324
55 3300013307 Ga0157372_10044658 Ga0157372_100446581 324
56 3300028379 Ga0268266_10004556 Ga0268266_1000455613 324
57 3300031911 Ga0307412_10094570 Ga0307412_100945701 324
58 3300031995 Ga0307409_100151114 Ga0307409_1001511141 324
59 3300032002 Ga0307416_100151011 Ga0307416_1001510112 324
60 3300032005 Ga0307411_10002526 Ga0307411_100025267 324
61 3300037471 Ga0395905_0321478 Ga0395905_0321478_210_1190 324
62 3300049571 Ga0501034_0000373 Ga0501034_0000373_56407_57396 324
63 3300049663 Ga0501223_002948 Ga0501223_002948_2109_3083 324
64 3300053727 Ga0500611_000012 Ga0500611_000012_32064_33038 324
65 2162886007 SwRhRL2b_contig_1307337 SwRhRL2b_0307.00006090 325
66 3300002737 JGI25162J39368_1000062 JGI25162J39368_100006225 325
67 3300002741 JGI25157J39369_1003241 JGI25157J39369_10032412 325
68 3300003316 rootH1_10014678 rootH1_100146783 325
69 3300003316 rootH1_10055563 rootH1_100555634 325
70 3300003320 rootH2_10241312 rootH2_102413122 325
71 3300003322 rootL2_10060312 rootL2_100603129 325
72 3300003322 rootL2_10147489 rootL2_101474895 325
73 3300003322 rootL2_10277121 rootL2_102771214 325
74 3300003322 rootL2_10307183 rootL2_103071832 325
75 3300003323 rootH1_10076350 rootH1_100763506 325
76 3300003323 rootH1_10169682 rootH1_101696828 325
77 3300003771 Ga0055526_1012971 Ga0055526_10129713 325
78 3300003790 Ga0055528_1000227 Ga0055528_100022723 325
79 3300003791 Ga0055530_10001448 Ga0055530_1000144810 325
80 3300003794 Ga0055531_10011692 Ga0055531_100116923 325
81 3300003794 Ga0055531_10013545 Ga0055531_100135453 325
82 3300005262 Ga0065165_1000514 Ga0065165_100051431 325
83 3300005262 Ga0065165_1002890 Ga0065165_10028906 325
84 3300005288 Ga0065714_10002913 Ga0065714_100029137 325
85 3300005288 Ga0065714_10004916 Ga0065714_100049164 325
86 3300005288 Ga0065714_10081377 Ga0065714_100813771 325
87 3300005289 Ga0065704_10000290 Ga0065704_100002909 325
88 3300005327 Ga0070658_10036874 Ga0070658_100368742 325
89 3300005327 Ga0070658_10172299 Ga0070658_101722993 325
90 3300005329 Ga0070683_100219642 Ga0070683_1002196422 325
91 3300005336 Ga0070680_100186762 Ga0070680_1001867622 325
92 3300005338 Ga0068868_100234191 Ga0068868_1002341911 325
93 3300005339 Ga0070660_100060929 Ga0070660_1000609292 325
94 3300005347 Ga0070668_100273974 Ga0070668_1002739742 325
95 3300005354 Ga0070675_100027476 Ga0070675_1000274763 325
96 3300005366 Ga0070659_100005481 Ga0070659_10000548113 325
97 3300005456 Ga0070678_100062040 Ga0070678_1000620403 325
98 3300005530 Ga0070679_100009536 Ga0070679_1000095364 325
99 3300005535 Ga0070684_100024633 Ga0070684_1000246337 325
100 3300005548 Ga0070665_100009647 Ga0070665_1000096472 325
101 3300005563 Ga0068855_100002627 Ga0068855_10000262721 325
102 3300005563 Ga0068855_100171011 Ga0068855_1001710113 325
103 3300005614 Ga0068856_100064647 Ga0068856_1000646474 325
104 3300005614 Ga0068856_100071340 Ga0068856_1000713402 325
105 3300005618 Ga0068864_100179352 Ga0068864_1001793521 325
106 3300006195 Ga0075366_10003771 Ga0075366_100037713 325
107 3300006237 Ga0097621_100316107 Ga0097621_1003161071 325
108 3300006844 Ga0075428_100473081 Ga0075428_1004730811 325
109 3300009093 Ga0105240_10085605 Ga0105240_100856054 325
110 3300009094 Ga0111539_10028750 Ga0111539_100287502 325
111 3300009174 Ga0105241_10013982 Ga0105241_100139823 325
112 3300009545 Ga0105237_10002056 Ga0105237_1000205615 325
113 3300009545 Ga0105237_10014838 Ga0105237_100148384 325
114 3300009545 Ga0105237_10033936 Ga0105237_100339362 325
115 3300009545 Ga0105237_10165609 Ga0105237_101656092 325
116 3300009545 Ga0105237_10276561 Ga0105237_102765612 325
117 3300010375 Ga0105239_10000081 Ga0105239_1000008197 325
118 3300010375 Ga0105239_10003413 Ga0105239_100034139 325
119 3300010375 Ga0105239_10030533 Ga0105239_100305338 325
120 3300010375 Ga0105239_10611409 Ga0105239_106114091 325
121 3300013100 Ga0157373_10000134 Ga0157373_1000013447 325
122 3300013100 Ga0157373_10000641 Ga0157373_100006412 325
123 3300013102 Ga0157371_10000656 Ga0157371_1000065644 325
124 3300013102 Ga0157371_10001180 Ga0157371_100011809 325
125 3300013102 Ga0157371_10002719 Ga0157371_100027196 325
126 3300013102 Ga0157371_10004216 Ga0157371_100042167 325
127 3300013102 Ga0157371_10043972 Ga0157371_100439724 325
128 3300013102 Ga0157371_10060081 Ga0157371_100600812 325
129 3300013104 Ga0157370_10000916 Ga0157370_1000091610 325
130 3300013104 Ga0157370_10061918 Ga0157370_100619182 325
131 3300013104 Ga0157370_10313357 Ga0157370_103133572 325
132 3300013104 Ga0157370_10506048 Ga0157370_105060481 325
133 3300013105 Ga0157369_10197188 Ga0157369_101971882 325
134 3300013296 Ga0157374_10099725 Ga0157374_100997252 325
135 3300013296 Ga0157374_10294142 Ga0157374_102941422 325
136 3300013306 Ga0163162_10000513 Ga0163162_100005132 325
137 3300013306 Ga0163162_10344771 Ga0163162_103447711 325
138 3300013307 Ga0157372_10000725 Ga0157372_1000072524 325
139 3300013307 Ga0157372_10012283 Ga0157372_100122835 325
140 3300013307 Ga0157372_10040702 Ga0157372_100407026 325
141 3300013307 Ga0157372_10073003 Ga0157372_100730032 325
142 3300014326 Ga0157380_10012577 Ga0157380_100125775 325
143 3300014497 Ga0182008_10000406 Ga0182008_100004068 325
144 3300015261 Ga0182006_1000703 Ga0182006_10007039 325
145 3300017792 Ga0163161_10080036 Ga0163161_100800361 325
146 3300025233 Ga0209437_100177 Ga0209437_10017724 325
147 3300025250 Ga0209026_1000357 Ga0209026_100035721 325
148 3300025258 Ga0209129_1006185 Ga0209129_10061854 325
149 3300025273 Ga0209673_1000014 Ga0209673_1000014352 325
150 3300025273 Ga0209673_1000018 Ga0209673_1000018300 325
151 3300025297 Ga0209758_1004737 Ga0209758_100473710 325
152 3300025298 Ga0209050_1000693 Ga0209050_100069331 325
153 3300025302 Ga0207426_1000148 Ga0207426_100014838 325
154 3300025302 Ga0207426_1001091 Ga0207426_100109125 325
155 3300025304 Ga0209257_1000023 Ga0209257_1000023208 325
156 3300025304 Ga0209257_1002351 Ga0209257_10023517 325
157 3300025904 Ga0207647_10002941 Ga0207647_100029416 325
158 3300025911 Ga0207654_10052992 Ga0207654_100529923 325
159 3300025913 Ga0207695_10019624 Ga0207695_100196243 325
160 3300025914 Ga0207671_10001659 Ga0207671_1000165917 325
161 3300025914 Ga0207671_10015544 Ga0207671_100155443 325
162 3300025917 Ga0207660_10234673 Ga0207660_102346732 325
163 3300025921 Ga0207652_10222215 Ga0207652_102222152 325
164 3300025932 Ga0207690_10000190 Ga0207690_100001903 325
165 3300025944 Ga0207661_10125288 Ga0207661_101252883 325
166 3300025949 Ga0207667_10005753 Ga0207667_100057539 325
167 3300026078 Ga0207702_10013873 Ga0207702_100138733 325
168 3300028379 Ga0268266_10024016 Ga0268266_100240162 325
169 3300028381 Ga0268264_10001323 Ga0268264_1000132312 325
170 3300028794 Ga0307515_10000007 Ga0307515_10000007134 325
171 3300028794 Ga0307515_10000114 Ga0307515_10000114113 325
172 3300028794 Ga0307515_10007071 Ga0307515_100070715 325
173 3300028794 Ga0307515_10195068 Ga0307515_101950682 325
174 3300031548 Ga0307408_100000570 Ga0307408_10000057036 325
175 3300031548 Ga0307408_100000683 Ga0307408_1000006836 325
176 3300031595 Ga0265313_10020066 Ga0265313_100200662 325
177 3300031852 Ga0307410_10389160 Ga0307410_103891601 325
178 3300031911 Ga0307412_10000001 Ga0307412_100000019 325
179 3300031911 Ga0307412_10002515 Ga0307412_1000251512 325
180 3300032004 Ga0307414_10000802 Ga0307414_100008025 325
181 3300032004 Ga0307414_10112101 Ga0307414_101121012 325
182 3300032004 Ga0307414_10169917 Ga0307414_101699172 325
183 3300032004 Ga0307414_10229243 Ga0307414_102292431 325
184 3300032133 Ga0316583_10007300 Ga0316583_100073002 325
185 3300033179 Ga0307507_10001092 Ga0307507_1000109210 325
186 3300037312 Ga0395899_0040478 Ga0395899_0040478_799_1782 325
187 3300037312 Ga0395899_0041645 Ga0395899_0041645_1560_2543 325
188 3300037418 Ga0395900_0186156 Ga0395900_0186156_121_1104 325
189 3300037466 Ga0395898_0061908 Ga0395898_0061908_400_1383 325
190 3300037471 Ga0395905_0060532 Ga0395905_0060532_1124_2110 325
191 3300038443 Ga0395901_0003458 Ga0395901_0003458_5339_6322 325
192 3300038443 Ga0395901_0130843 Ga0395901_0130843_163_1143 325
193 3300038443 Ga0395901_0293835 Ga0395901_0293835_562_1545 325
194 3300044658 Ga0466972_0000021 Ga0466972_0000021_21939_22919 325
195 3300044765 Ga0466970_0000944 Ga0466970_0000944_9739_10719 325
196 3300046462 Ga0495651_0129295 Ga0495651_0129295_326_1303 325
197 3300046492 Ga0495585_0003586 Ga0495585_0003586_1219_2196 325
198 3300046524 Ga0495648_0005282 Ga0495648_0005282_8474_9451 325
199 3300046524 Ga0495648_0050011 Ga0495648_0050011_894_1871 325
200 3300046538 Ga0495609_0020297 Ga0495609_0020297_1010_1987 325
201 3300046558 Ga0495633_0000014 Ga0495633_0000014_18152_19129 325
202 3300046616 Ga0495668_0000003 Ga0495668_0000003_265870_266847 325
203 3300046660 Ga0495625_0000949 Ga0495625_0000949_17620_18597 325
204 3300046660 Ga0495625_0007363 Ga0495625_0007363_3895_4872 325
205 3300046660 Ga0495625_0189008 Ga0495625_0189008_207_1184 325
206 3300046810 Ga0495660_0117000 Ga0495660_0117000_210_1187 325
207 3300047320 Ga0495672_0006754 Ga0495672_0006754_6673_7650 325
208 3300047320 Ga0495672_0035087 Ga0495672_0035087_251_1231 325
209 3300047472 Ga0495686_0000372 Ga0495686_0000372_29420_30397 325
210 3300049571 Ga0501034_0046976 Ga0501034_0046976_331_1311 325
211 3300049576 Ga0501040_0184243 Ga0501040_0184243_33_1016 325
212 3300049649 Ga0501198_013058 Ga0501198_013058_46_1026 325
213 3300049652 Ga0501202_015862 Ga0501202_015862_56_1036 325
214 3300049653 Ga0501206_005683 Ga0501206_005683_480_1460 325
215 3300049655 Ga0501208_011028 Ga0501208_011028_126_1106 325
216 3300049661 Ga0501217_002532 Ga0501217_002532_54_1034 325
217 3300049662 Ga0501222_002339 Ga0501222_002339_1491_2471 325
218 3300049669 Ga0501235_000577 Ga0501235_000577_6334_7314 325
219 3300049675 Ga0501243_004006 Ga0501243_004006_800_1780 325
220 3300049682 Ga0501252_007417 Ga0501252_007417_54_1034 325
221 3300049688 Ga0501259_008210 Ga0501259_008210_409_1389 325
222 3300049690 Ga0501261_006535 Ga0501261_006535_75_1055 325
223 3300049708 Ga0501245_007479 Ga0501245_007479_76_1056 325
224 3300049758 Ga0501241_004878 Ga0501241_004878_882_1862 325
225 3300049774 Ga0501278_002143 Ga0501278_002143_259_1239 325
226 3300049822 Ga0501035_0024706 Ga0501035_0024706_901_1881 325
227 3300050493 nmdc:mga0k408_2260_c1 nmdc:mga0k408_2260_c1_8495_9472 325
228 3300050507 nmdc:mga05p37_68157_c1 nmdc:mga05p37_68157_c1_1171_2268 325
229 3300050511 nmdc:mga08y16_141473_c1 nmdc:mga08y16_141473_c1_1068_2057 325
230 3300050511 nmdc:mga08y16_17428_c1 nmdc:mga08y16_17428_c1_3978_4979 325
231 3300053092 Ga0500583_0056256 Ga0500583_0056256_617_1594 325
232 3300053093 Ga0500651_0000102 Ga0500651_0000102_15831_16808 325
233 3300053122 Ga0500608_027958 Ga0500608_027958_203_1180 325
234 3300053125 Ga0500618_000061 Ga0500618_000061_3005_3982 325
235 3300053138 Ga0500564_031782 Ga0500564_031782_1048_2025 325
236 3300053139 Ga0500568_0002647 Ga0500568_0002647_711_1688 325
237 3300053153 Ga0500616_0001274 Ga0500616_0001274_20923_21906 325
238 3300053153 Ga0500616_0018913 Ga0500616_0018913_599_1576 325
239 3300053153 Ga0500616_0045388 Ga0500616_0045388_311_1288 325

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

281

360

0.97

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

320

359

0.96

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

268

309

0.94

PF01965

DJ-1_PfpI

DJ-1/PfpI family

82

221

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.9573 217 320
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9406 221 316
3oio-assembly1.cif.gz_A crystal structure of transcriptional regulator (arac-type dna-binding domain-containing proteins) from chromobacterium violaceum 0.9401 218 319
1u8b-assembly1.cif.gz_A crystal structure of the methylated n-ada/dna complex 0.9307 218 270
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.9263 219 324
ID Description Score Start End Superfamily
af_P31449_179_288_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9666 218 319 1.10.10.60
af_P09377_170_274_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9639 218 318 1.10.10.60
af_P77379_178_282_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9626 222 319 1.10.10.60
af_P0A9E0_176_235_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9602 216 269 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9595 270 317 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A329BEW4-F1-model_v4 AraC family transcriptional regulator 0.9889 218 319 GO:0003700
GO:0043565
AF-A0A239B962-F1-model_v4 Transcriptional regulator, AraC family 0.9887 218 319 GO:0003700
GO:0043565
AF-E0S2S7-F1-model_v4 Transcriptional regulator AraC family 0.9855 218 319 GO:0003700
GO:0043565
AF-A4X6Y1-F1-model_v4 Transcriptional regulator, AraC family 0.9825 216 317 GO:0003700
GO:0043565
AF-A0A2N5I3E9-F1-model_v4 AraC family transcriptional regulator 0.9785 217 319 GO:0003700
GO:0006281
GO:0008168
GO:0008270
GO:0032259
GO:0043565

Feature Viewer

pLDDT pTM Quality
87.92 0.63 Medium
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Predicted Structure (AlphaFold2)

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