F351396

General Info

Members Datasets Scaffolds Average Seq Length
238 180 218 195

Family's Representative Sequence

Representative Sequence 3300050493|nmdc:mga0k408_1458_c1|nmdc:mga0k408_1458_c1_6672_7364
Length 230
Sequence MPSSYSSVLCIVNEIKTINNEIPLKKRNINIRFIYKQTINQMRKIRIFEHISLDGVIEHDEDYTYGAWTIPYRSPAGAAMLFEAYGPNFDLLLARHTYDIFTGFWPNAGDFPMANAINAATKYIVTHRPDSLEWGPVKGLGEDIIAAIRDLKSTDGSDLIVVGSSTLTSLLLDQGLVDEVVLITYPVLLGHGKRLLADSINARELAFVDSKSTSTGLLINTYRHVGPLKS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
3 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
4 2738541277 Variovorax sp. GV051 Isolate Unclassified
5 2738543019 Variovorax sp. GV040 Isolate Unclassified
6 2738543023 Pedobacter sp. OK628 Isolate Unclassified
7 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
8 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
9 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
10 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
11 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
12 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
13 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
14 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
15 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
16 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
17 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
18 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
19 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
20 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
21 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
22 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
23 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
24 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
25 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
26 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
27 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
28 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
29 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
30 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
31 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
32 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
33 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
34 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
35 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
36 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
37 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
38 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
39 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
40 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
41 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
42 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
43 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
44 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
45 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
46 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
47 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
48 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
49 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
50 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
51 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
52 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
53 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
54 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
55 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
56 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
57 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
58 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
59 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
60 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
61 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
62 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
63 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
65 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
66 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
67 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
68 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
69 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
70 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
71 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
72 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
73 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
74 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
75 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
76 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
77 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
78 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
79 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
80 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
81 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
82 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
83 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
84 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
85 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
86 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
87 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
88 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
92 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
116 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
117 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
118 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
119 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
120 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
121 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
122 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
123 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
124 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
125 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
126 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
127 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
128 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
129 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
130 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
131 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
132 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
133 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
134 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
135 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
136 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
137 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
138 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
139 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
140 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
141 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
142 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
143 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
144 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
145 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
146 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
147 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
148 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
149 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
150 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
151 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
152 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
153 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
154 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
155 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
156 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
157 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
158 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
159 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
160 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
161 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
162 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
163 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
164 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
165 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
166 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
167 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
168 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
170 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
171 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
172 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
173 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
174 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
175 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
176 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
177 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
178 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
179 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
180 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.76
Metatranscriptomes 0.42
Isolates 8.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.4
Nodule 0.84
Rhizoplane 5.88
Rhizosphere 68.91
Stem 0
Stem Tuber 0
Unclassified 15.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1662053 2162886007 Bacteria 3001
2 SwRhRL2b_contig_713296 2162886007 Bacteria 2207
3 JGI24739J22299_10014628 3300001989 Bacteria 2852
4 JGI24737J22298_10006576 3300001990 Bacteria 3962
5 JGI24735J21928_10000020 3300002067 Bacteria 108706
6 JGI25162J39368_1000022 3300002737 Bacteria 239510
7 JGI25151J46595_10002645 3300003187 Bacteria 10545
8 rootH1_10005676 3300003316 Bacteria 11468
9 rootH1_10005676 3300003323 Bacteria 4854
10 rootH1_10016291 3300003316 Bacteria 9689
11 rootH2_10008985 3300003320 Bacteria 15998
12 rootH2_10081500 3300003320 Bacteria 23617
13 rootH2_10197886 3300003320 Bacteria 1812
14 rootH2_10229557 3300003320 Bacteria 1079
15 rootL2_10187486 3300003322 Bacteria 5180
16 rootL2_10279988 3300003322 Bacteria 1189
17 rootL2_10279989 3300003322 Bacteria 1631
18 rootH1_10013340 3300003323 Bacteria 3712
19 rootH1_10337388 3300003323 Bacteria 1863
20 rootH1_10348864 3300003323 Bacteria 2724
21 JGI25160J50197_1000074 3300003354 Bacteria 103621
22 Ga0055527_1013852 3300003760 Bacteria 896
23 Ga0055536_1000024 3300003781 Bacteria 185534
24 Ga0055530_10003260 3300003791 Bacteria 9440
25 Ga0065165_1000203 3300005262 Bacteria 103001
26 Ga0065714_10015553 3300005288 Bacteria 1500
27 Ga0065704_10001617 3300005289 Bacteria 13592
28 Ga0065704_10071135 3300005289 Bacteria 12917
29 Ga0065704_10080625 3300005289 Bacteria 3912
30 Ga0065704_10184398 3300005289 Bacteria 1221
31 Ga0065704_10199335 3300005289 Bacteria 1153
32 Ga0070658_10144251 3300005327 Bacteria 1990
33 Ga0070670_100061535 3300005331 Bacteria 3222
34 Ga0070670_100232986 3300005331 Bacteria 1603
35 Ga0068868_100000657 3300005338 Bacteria 23311
36 Ga0070661_100054247 3300005344 Bacteria 2936
37 Ga0070671_100003575 3300005355 Bacteria 12159
38 Ga0070708_100629278 3300005445 Bacteria 1011
39 Ga0068867_100025463 3300005459 Bacteria 4245
40 Ga0070699_100237060 3300005518 Bacteria 1627
41 Ga0070684_100177118 3300005535 Bacteria 1938
42 Ga0070697_100097518 3300005536 Bacteria 2439
43 Ga0070697_100595542 3300005536 Bacteria 971
44 Ga0068853_100192413 3300005539 Bacteria 1854
45 Ga0068853_100580143 3300005539 Bacteria 1064
46 Ga0068853_100608643 3300005539 Bacteria 1038
47 Ga0068853_100780086 3300005539 Bacteria 914
48 Ga0068853_100875652 3300005539 Bacteria 862
49 Ga0070665_100000147 3300005548 Bacteria 129683
50 Ga0070664_100034594 3300005564 Bacteria 4238
51 Ga0068854_100039034 3300005578 Bacteria 3342
52 Ga0068852_100379202 3300005616 Bacteria 1387
53 Ga0068859_100013201 3300005617 Bacteria 8294
54 Ga0068859_100587393 3300005617 Bacteria 1207
55 Ga0068864_100099214 3300005618 Bacteria 2580
56 Ga0068861_100300469 3300005719 Bacteria 1390
57 Ga0068851_10221925 3300005834 Unclassified 1062
58 Ga0068870_10119452 3300005840 Bacteria 1516
59 Ga0068860_100008773 3300005843 Bacteria 10074
60 Ga0075365_10065313 3300006038 Bacteria 2439
61 Ga0075366_10084856 3300006195 Bacteria 1894
62 Ga0068865_100168664 3300006881 Bacteria 1676
63 Ga0075436_100039794 3300006914 Bacteria 3244
64 Ga0097620_100013201 3300006931 Bacteria 8294
65 Ga0097620_100587400 3300006931 Bacteria 1207
66 Ga0105240_10004003 3300009093 Bacteria 22708
67 Ga0105240_10067595 3300009093 Bacteria 4429
68 Ga0105240_10100535 3300009093 Bacteria 3518
69 Ga0105245_10462718 3300009098 Bacteria 1279
70 Ga0105245_10531712 3300009098 Bacteria 1196
71 Ga0105245_10972941 3300009098 Bacteria 892
72 Ga0105243_10000004 3300009148 Bacteria 601266
73 Ga0105237_10009013 3300009545 Bacteria 10726
74 Ga0105237_10010864 3300009545 Bacteria 9660
75 Ga0105237_10017565 3300009545 Bacteria 7413
76 Ga0105237_10082284 3300009545 Bacteria 3210
77 Ga0105237_10084578 3300009545 Bacteria 3163
78 Ga0105237_10299582 3300009545 Bacteria 1611
79 Ga0105238_10221463 3300009551 Bacteria 1868
80 Ga0105249_10596982 3300009553 Bacteria 1158
81 Ga0105239_10000002 3300010375 Bacteria 610298
82 Ga0105239_10000012 3300010375 Bacteria 332279
83 Ga0105239_10002464 3300010375 Bacteria 23582
84 Ga0105246_10259475 3300011119 Bacteria 1384
85 Ga0157371_10015752 3300013102 Bacteria 5659
86 Ga0157371_10029283 3300013102 Bacteria 3984
87 Ga0157371_10289646 3300013102 Bacteria 1184
88 Ga0157370_11138683 3300013104 Bacteria 705
89 Ga0157369_10053231 3300013105 Bacteria 4376
90 Ga0157378_10000045 3300013297 Bacteria 106376
91 Ga0157378_10035390 3300013297 Bacteria 4416
92 Ga0157378_11160977 3300013297 Bacteria 811
93 Ga0157372_10084623 3300013307 Bacteria 3595
94 Ga0157372_10267921 3300013307 Bacteria 1984
95 Ga0157375_10000373 3300013308 Bacteria 40703
96 Ga0157375_10041679 3300013308 Bacteria 4435
97 Ga0157375_10050067 3300013308 Bacteria 4097
98 Ga0157375_11003011 3300013308 Bacteria 975
99 Ga0163163_10030389 3300014325 Bacteria 5206
100 Ga0157380_10369781 3300014326 Bacteria 1349
101 Ga0182008_10000006 3300014497 Bacteria 378521
102 Ga0182008_10035154 3300014497 Bacteria 2511
103 Ga0182006_1047354 3300015261 Bacteria 1667
104 Ga0206351_10778961 3300020077 Bacteria 1613
105 Ga0213873_10005639 3300021358 Eukaryota 2414
106 Ga0213872_10102912 3300021361 Eukaryota 1272
107 Ga0213871_10002102 3300021441 Eukaryota 3584
108 Ga0209437_100024 3300025233 Bacteria 592878
109 Ga0209130_1006446 3300025284 Bacteria 3811
110 Ga0209676_1000008 3300025292 Bacteria 991778
111 Ga0209025_1000548 3300025294 Bacteria 70257
112 Ga0209050_1000055 3300025298 Bacteria 339254
113 Ga0207426_1000018 3300025302 Bacteria 566740
114 Ga0207643_10093707 3300025908 Bacteria 1754
115 Ga0207705_10171219 3300025909 Bacteria 1635
116 Ga0207684_10126592 3300025910 Bacteria 2192
117 Ga0207695_10002731 3300025913 Bacteria 25745
118 Ga0207695_10593803 3300025913 Bacteria 988
119 Ga0207671_10016327 3300025914 Bacteria 5774
120 Ga0207671_10049895 3300025914 Bacteria 3099
121 Ga0207671_10396408 3300025914 Bacteria 1097
122 Ga0207671_10407434 3300025914 Bacteria 1081
123 Ga0207649_10031399 3300025920 Bacteria 3156
124 Ga0207650_10043026 3300025925 Bacteria 3313
125 Ga0207687_10792461 3300025927 Bacteria 808
126 Ga0207644_10007249 3300025931 Bacteria 7219
127 Ga0207686_10260185 3300025934 Bacteria 1272
128 Ga0207709_10000010 3300025935 Bacteria 601305
129 Ga0207709_10038204 3300025935 Bacteria 2857
130 Ga0207679_10055736 3300025945 Bacteria 2915
131 Ga0207667_10043501 3300025949 Bacteria 4766
132 Ga0207712_10119744 3300025961 Bacteria 1989
133 Ga0207658_10359188 3300025986 Bacteria 1270
134 Ga0207677_10000004 3300026023 Bacteria 299062
135 Ga0207639_10035184 3300026041 Bacteria 3706
136 Ga0207639_10164842 3300026041 Bacteria 1871
137 Ga0207639_10836074 3300026041 Bacteria 859
138 Ga0207674_10861686 3300026116 Bacteria 873
139 Ga0207675_100170969 3300026118 Bacteria 2077
140 Ga0207698_10348639 3300026142 Bacteria 1397
141 Ga0268266_10000030 3300028379 Bacteria 417120
142 Ga0268265_10118988 3300028380 Bacteria 2173
143 Ga0268264_10012801 3300028381 Bacteria 6904
144 Ga0307515_10003049 3300028794 Bacteria 35493
145 Ga0307509_10151846 3300031507 Bacteria 2230
146 Ga0307516_10199286 3300031730 Bacteria 1723
147 Ga0307405_10000002 3300031731 Bacteria 575196
148 Ga0307414_10089591 3300032004 Bacteria 2280
149 Ga0395901_0091625 3300038443 Unclassified 3182
150 Ga0436360_1218976 3300039438 Eukaryota 4319
151 Ga0436362_0416744 3300039453 Bacteria 10002
152 Ga0466972_0000035 3300044658 Bacteria 147516
153 Ga0466965_0020192 3300044683 Bacteria 3201
154 Ga0466964_0142181 3300044706 Bacteria 1104
155 Ga0466971_0000034 3300044719 Bacteria 56431
156 Ga0466968_0090213 3300044735 Bacteria 1357
157 Ga0466970_0008058 3300044765 Bacteria 5291
158 Ga0466970_0088042 3300044765 Bacteria 1684
159 Ga0466957_0029907 3300044842 Bacteria 3250
160 Ga0466959_0498176 3300045049 Bacteria 823
161 Ga0495627_004123 3300046453 Bacteria 6173
162 Ga0495650_0110105 3300046471 Bacteria 1024
163 Ga0495585_0000341 3300046492 Bacteria 45317
164 Ga0495585_0000832 3300046492 Bacteria 26625
165 Ga0495631_0220724 3300046518 Bacteria 809
166 Ga0495632_0178612 3300046519 Bacteria 973
167 Ga0495648_0108724 3300046524 Bacteria 1513
168 Ga0495654_0027533 3300046530 Bacteria 2914
169 Ga0495609_0005796 3300046538 Bacteria 6413
170 Ga0495622_0030109 3300046557 Bacteria 2536
171 Ga0495668_0000009 3300046616 Bacteria 492623
172 Ga0495625_0000636 3300046660 Bacteria 50443
173 Ga0495658_0006049 3300046683 Bacteria 5945
174 Ga0495670_0588134 3300046691 Bacteria 606
175 Ga0495660_0002852 3300046810 Bacteria 10868
176 Ga0495660_0190483 3300046810 Bacteria 986
177 Ga0495687_002666 3300047443 Bacteria 13909
178 Ga0496100_0000040 3300048903 Bacteria 92907
179 Ga0496101_0000175 3300048904 Bacteria 51289
180 Ga0496102_0000203 3300048905 Bacteria 79868
181 Ga0496102_0342066 3300048905 Bacteria 1409
182 Ga0496103_0000309 3300048906 Bacteria 45090
183 Ga0496104_0084482 3300048907 Bacteria 3029
184 Ga0496106_0571602 3300048909 Bacteria 906
185 Ga0496107_0116115 3300048910 Bacteria 1970
186 Ga0496107_0426157 3300048910 Bacteria 986
187 Ga0496108_0199343 3300048911 Bacteria 1737
188 Ga0496112_0523598 3300048915 Bacteria 1120
189 Ga0496113_0171331 3300048916 Bacteria 1719
190 Ga0496115_0940190 3300048918 Bacteria 664
191 Ga0496116_0096603 3300048919 Bacteria 1779
192 Ga0496117_0000532 3300048920 Bacteria 62597
193 Ga0496118_0000206 3300048921 Bacteria 104093
194 Ga0496121_0000455 3300048924 Bacteria 80555
195 Ga0496121_0301549 3300048924 Bacteria 1087
196 Ga0496122_0013467 3300048925 Bacteria 8002
197 Ga0496123_0030001 3300048926 Bacteria 3990
198 Ga0496123_0324467 3300048926 Bacteria 725
199 Ga0496124_0107542 3300048927 Bacteria 2250
200 Ga0496125_0174926 3300048928 Bacteria 1438
201 Ga0496125_0263969 3300048928 Unclassified 1077
202 Ga0496126_0072186 3300048929 Bacteria 3071
203 Ga0495682_0076455 3300049460 Bacteria 1204
204 Ga0501033_0000049 3300049570 Bacteria 114610
205 Ga0501038_0106554 3300049574 Bacteria 2326
206 Ga0501068_0428162 3300049584 Bacteria 855
207 Ga0501080_0411809 3300049742 Bacteria 1215
208 Ga0501083_0013318 3300049744 Bacteria 5751
209 Ga0501241_000971 3300049758 Bacteria 6058
210 Ga0501241_003743 3300049758 Bacteria 2864
211 Ga0501269_000880 3300049766 Bacteria 4487
212 nmdc:mga0k408_1458_c1 3300050493 Bacteria 12758
213 nmdc:mga0k408_440828_c1 3300050493 Bacteria 774
214 nmdc:mga08x19_164348_c1 3300050514 Bacteria 1509
215 Ga0500642_0006201 3300053130 Bacteria 3918
216 Ga0500627_0008477 3300053158 Bacteria 3655
217 Ga0500645_024267 3300053730 Unclassified 1854
218 Ga0466962_0000429 3300061719 Bacteria 18192

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300045049 Ga0466959_0498176 Ga0466959_0498176_259_810 174
2 3300005617 Ga0068859_100587393 Ga0068859_1005873932 180
3 3300006931 Ga0097620_100587400 Ga0097620_1005874002 180
4 3300005459 Ga0068867_100025463 Ga0068867_1000254636 183
5 3300009545 Ga0105237_10082284 Ga0105237_100822844 183
6 3300025934 Ga0207686_10260185 Ga0207686_102601853 183
7 3300025961 Ga0207712_10119744 Ga0207712_101197443 183
8 3300028380 Ga0268265_10118988 Ga0268265_101189883 183
9 iso_pu_bacteria 2738541277 2738722546 183
10 iso_pu_bacteria 2738543019 2739283117 183
11 iso_pu_bacteria 2904541872 2904548825 183
12 iso_pu_bacteria 2929160207 2929166758 183
13 iso_pu_bacteria 8002869464 8002870276 184
14 iso_pu_bacteria 2512047030 2512349546 185
15 iso_pu_bacteria 2599185184 2599481290 185
16 iso_pu_bacteria 2738543023 2739300827 185
17 iso_pu_bacteria 2852623160 2852623884 185
18 iso_pu_bacteria 2852627209 2852628849 185
19 iso_pu_bacteria 2884933994 2884937212 185
20 iso_pu_bacteria 2885270888 2885273510 185
21 iso_pu_bacteria 2904615490 2904618689 185
22 iso_pu_bacteria 2921643360 2921647113 185
23 iso_pu_bacteria 2928078545 2928081888 185
24 iso_pu_bacteria 2928147474 2928151910 185
25 iso_pu_bacteria 2929177148 2929179610 185
26 iso_pu_bacteria 2929921140 2929924117 185
27 iso_pu_bacteria 2932082852 2932087218 185
28 iso_pu_bacteria 2945977869 2945982037 185
29 iso_pu_bacteria 2946013367 2946018574 185
30 3300014326 Ga0157380_10369781 Ga0157380_103697811 186
31 3300003187 JGI25151J46595_10002645 JGI25151J46595_100026459 187
32 3300003760 Ga0055527_1013852 Ga0055527_10138521 187
33 3300005289 Ga0065704_10199335 Ga0065704_101993352 187
34 3300005331 Ga0070670_100061535 Ga0070670_1000615355 187
35 3300005344 Ga0070661_100054247 Ga0070661_1000542472 187
36 3300005564 Ga0070664_100034594 Ga0070664_1000345943 187
37 3300005618 Ga0068864_100099214 Ga0068864_1000992142 187
38 3300013297 Ga0157378_10000045 Ga0157378_1000004593 187
39 3300013308 Ga0157375_10000373 Ga0157375_1000037340 187
40 3300025294 Ga0209025_1000548 Ga0209025_100054849 187
41 3300025920 Ga0207649_10031399 Ga0207649_100313995 187
42 3300025925 Ga0207650_10043026 Ga0207650_100430263 187
43 3300025945 Ga0207679_10055736 Ga0207679_100557362 187
44 3300046453 Ga0495627_004123 Ga0495627_004123_1437_2018 187
45 3300048911 Ga0496108_0199343 Ga0496108_0199343_643_1224 187
46 3300048915 Ga0496112_0523598 Ga0496112_0523598_390_971 187
47 3300049742 Ga0501080_0411809 Ga0501080_0411809_215_796 187
48 3300049744 Ga0501083_0013318 Ga0501083_0013318_2008_2589 187
49 3300005327 Ga0070658_10144251 Ga0070658_101442512 188
50 3300005338 Ga0068868_100000657 Ga0068868_10000065722 188
51 3300005445 Ga0070708_100629278 Ga0070708_1006292782 188
52 3300005518 Ga0070699_100237060 Ga0070699_1002370602 188
53 3300005536 Ga0070697_100097518 Ga0070697_1000975183 188
54 3300005536 Ga0070697_100595542 Ga0070697_1005955421 188
55 3300005719 Ga0068861_100300469 Ga0068861_1003004692 188
56 3300006038 Ga0075365_10065313 Ga0075365_100653134 188
57 3300006881 Ga0068865_100168664 Ga0068865_1001686642 188
58 3300006914 Ga0075436_100039794 Ga0075436_1000397942 188
59 3300009098 Ga0105245_10531712 Ga0105245_105317122 188
60 3300009553 Ga0105249_10596982 Ga0105249_105969822 188
61 3300013308 Ga0157375_11003011 Ga0157375_110030112 188
62 3300025909 Ga0207705_10171219 Ga0207705_101712191 188
63 3300025910 Ga0207684_10126592 Ga0207684_101265922 188
64 3300025927 Ga0207687_10792461 Ga0207687_107924612 188
65 3300025935 Ga0207709_10038204 Ga0207709_100382042 188
66 3300026023 Ga0207677_10000004 Ga0207677_10000004207 188
67 3300026118 Ga0207675_100170969 Ga0207675_1001709693 188
68 3300044683 Ga0466965_0020192 Ga0466965_0020192_890_1471 188
69 3300044706 Ga0466964_0142181 Ga0466964_0142181_84_665 188
70 3300044719 Ga0466971_0000034 Ga0466971_0000034_25427_26008 188
71 3300044735 Ga0466968_0090213 Ga0466968_0090213_338_919 188
72 3300044842 Ga0466957_0029907 Ga0466957_0029907_1047_1628 188
73 3300048905 Ga0496102_0342066 Ga0496102_0342066_53_634 188
74 3300048910 Ga0496107_0116115 Ga0496107_0116115_482_1063 188
75 3300049570 Ga0501033_0000049 Ga0501033_0000049_110664_111245 188
76 3300049574 Ga0501038_0106554 Ga0501038_0106554_96_677 188
77 3300049584 Ga0501068_0428162 Ga0501068_0428162_261_842 188
78 3300050514 nmdc:mga08x19_164348_c1 nmdc:mga08x19_164348_c1_597_1178 188
79 3300061719 Ga0466962_0000429 Ga0466962_0000429_3348_3929 188
80 2162886007 SwRhRL2b_contig_1662053 SwRhRL2b_0034.00007390 189
81 2162886007 SwRhRL2b_contig_713296 SwRhRL2b_0057.00006400 189
82 3300001989 JGI24739J22299_10014628 JGI24739J22299_100146283 189
83 3300001990 JGI24737J22298_10006576 JGI24737J22298_100065762 189
84 3300002067 JGI24735J21928_10000020 JGI24735J21928_1000002097 189
85 3300002737 JGI25162J39368_1000022 JGI25162J39368_1000022131 189
86 3300003316 rootH1_10005676 rootH1_100056766 189
87 3300003316 rootH1_10016291 rootH1_100162915 189
88 3300003320 rootH2_10008985 rootH2_100089854 189
89 3300003320 rootH2_10081500 rootH2_100815009 189
90 3300003320 rootH2_10197886 rootH2_101978862 189
91 3300003320 rootH2_10229557 rootH2_102295571 189
92 3300003322 rootL2_10187486 rootL2_101874862 189
93 3300003322 rootL2_10279988 rootL2_102799881 189
94 3300003322 rootL2_10279989 rootL2_102799892 189
95 3300003323 rootH1_10013340 rootH1_100133403 189
96 3300003323 rootH1_10337388 rootH1_103373882 189
97 3300003323 rootH1_10348864 rootH1_103488643 189
98 3300003354 JGI25160J50197_1000074 JGI25160J50197_100007435 189
99 3300003781 Ga0055536_1000024 Ga0055536_100002470 189
100 3300003791 Ga0055530_10003260 Ga0055530_100032606 189
101 3300005262 Ga0065165_1000203 Ga0065165_100020369 189
102 3300005288 Ga0065714_10015553 Ga0065714_100155532 189
103 3300005289 Ga0065704_10001617 Ga0065704_1000161714 189
104 3300005289 Ga0065704_10071135 Ga0065704_1007113510 189
105 3300005289 Ga0065704_10080625 Ga0065704_100806256 189
106 3300005289 Ga0065704_10184398 Ga0065704_101843982 189
107 3300005331 Ga0070670_100232986 Ga0070670_1002329863 189
108 3300005355 Ga0070671_100003575 Ga0070671_1000035754 189
109 3300005535 Ga0070684_100177118 Ga0070684_1001771182 189
110 3300005539 Ga0068853_100192413 Ga0068853_1001924132 189
111 3300005539 Ga0068853_100580143 Ga0068853_1005801431 189
112 3300005539 Ga0068853_100608643 Ga0068853_1006086432 189
113 3300005539 Ga0068853_100780086 Ga0068853_1007800861 189
114 3300005539 Ga0068853_100875652 Ga0068853_1008756521 189
115 3300005548 Ga0070665_100000147 Ga0070665_100000147113 189
116 3300005578 Ga0068854_100039034 Ga0068854_1000390342 189
117 3300005616 Ga0068852_100379202 Ga0068852_1003792022 189
118 3300005617 Ga0068859_100013201 Ga0068859_1000132019 189
119 3300005834 Ga0068851_10221925 Ga0068851_102219252 189
120 3300005840 Ga0068870_10119452 Ga0068870_101194522 189
121 3300005843 Ga0068860_100008773 Ga0068860_1000087731 189
122 3300006195 Ga0075366_10084856 Ga0075366_100848562 189
123 3300006931 Ga0097620_100013201 Ga0097620_1000132019 189
124 3300009093 Ga0105240_10004003 Ga0105240_100040035 189
125 3300009093 Ga0105240_10067595 Ga0105240_100675956 189
126 3300009093 Ga0105240_10100535 Ga0105240_101005352 189
127 3300009098 Ga0105245_10462718 Ga0105245_104627181 189
128 3300009098 Ga0105245_10972941 Ga0105245_109729412 189
129 3300009148 Ga0105243_10000004 Ga0105243_10000004384 189
130 3300009545 Ga0105237_10009013 Ga0105237_100090132 189
131 3300009545 Ga0105237_10010864 Ga0105237_1001086411 189
132 3300009545 Ga0105237_10017565 Ga0105237_100175652 189
133 3300009545 Ga0105237_10084578 Ga0105237_100845782 189
134 3300009545 Ga0105237_10299582 Ga0105237_102995821 189
135 3300009551 Ga0105238_10221463 Ga0105238_102214632 189
136 3300010375 Ga0105239_10000002 Ga0105239_10000002338 189
137 3300010375 Ga0105239_10000012 Ga0105239_10000012236 189
138 3300010375 Ga0105239_10002464 Ga0105239_1000246414 189
139 3300011119 Ga0105246_10259475 Ga0105246_102594752 189
140 3300013102 Ga0157371_10015752 Ga0157371_100157522 189
141 3300013102 Ga0157371_10029283 Ga0157371_100292835 189
142 3300013102 Ga0157371_10289646 Ga0157371_102896462 189
143 3300013104 Ga0157370_11138683 Ga0157370_111386831 189
144 3300013105 Ga0157369_10053231 Ga0157369_100532313 189
145 3300013297 Ga0157378_10035390 Ga0157378_100353903 189
146 3300013297 Ga0157378_11160977 Ga0157378_111609772 189
147 3300013307 Ga0157372_10084623 Ga0157372_100846235 189
148 3300013307 Ga0157372_10267921 Ga0157372_102679211 189
149 3300013308 Ga0157375_10041679 Ga0157375_100416793 189
150 3300013308 Ga0157375_10050067 Ga0157375_100500673 189
151 3300014325 Ga0163163_10030389 Ga0163163_100303892 189
152 3300014497 Ga0182008_10000006 Ga0182008_10000006111 189
153 3300014497 Ga0182008_10035154 Ga0182008_100351543 189
154 3300015261 Ga0182006_1047354 Ga0182006_10473542 189
155 3300020077 Ga0206351_10778961 Ga0206351_107789612 189
156 3300021358 Ga0213873_10005639 Ga0213873_100056392 189
157 3300021361 Ga0213872_10102912 Ga0213872_101029121 189
158 3300021441 Ga0213871_10002102 Ga0213871_100021023 189
159 3300025233 Ga0209437_100024 Ga0209437_100024445 189
160 3300025284 Ga0209130_1006446 Ga0209130_10064465 189
161 3300025292 Ga0209676_1000008 Ga0209676_1000008201 189
162 3300025298 Ga0209050_1000055 Ga0209050_1000055211 189
163 3300025302 Ga0207426_1000018 Ga0207426_1000018315 189
164 3300025908 Ga0207643_10093707 Ga0207643_100937072 189
165 3300025913 Ga0207695_10002731 Ga0207695_1000273116 189
166 3300025913 Ga0207695_10593803 Ga0207695_105938031 189
167 3300025914 Ga0207671_10016327 Ga0207671_100163272 189
168 3300025914 Ga0207671_10049895 Ga0207671_100498953 189
169 3300025914 Ga0207671_10396408 Ga0207671_103964082 189
170 3300025914 Ga0207671_10407434 Ga0207671_104074341 189
171 3300025931 Ga0207644_10007249 Ga0207644_100072494 189
172 3300025935 Ga0207709_10000010 Ga0207709_10000010386 189
173 3300025949 Ga0207667_10043501 Ga0207667_100435012 189
174 3300025986 Ga0207658_10359188 Ga0207658_103591882 189
175 3300026041 Ga0207639_10035184 Ga0207639_100351841 189
176 3300026041 Ga0207639_10164842 Ga0207639_101648422 189
177 3300026041 Ga0207639_10836074 Ga0207639_108360741 189
178 3300026116 Ga0207674_10861686 Ga0207674_108616861 189
179 3300026142 Ga0207698_10348639 Ga0207698_103486392 189
180 3300028379 Ga0268266_10000030 Ga0268266_10000030326 189
181 3300028381 Ga0268264_10012801 Ga0268264_100128012 189
182 3300028794 Ga0307515_10003049 Ga0307515_100030492 189
183 3300031507 Ga0307509_10151846 Ga0307509_101518461 189
184 3300031730 Ga0307516_10199286 Ga0307516_101992863 189
185 3300031731 Ga0307405_10000002 Ga0307405_10000002193 189
186 3300032004 Ga0307414_10089591 Ga0307414_100895912 189
187 3300038443 Ga0395901_0091625 Ga0395901_0091625_2477_3145 189
188 3300039438 Ga0436360_1218976 Ga0436360_1218976_1033_1641 189
189 3300039453 Ga0436362_0416744 Ga0436362_0416744_6393_7001 189
190 3300044658 Ga0466972_0000035 Ga0466972_0000035_9464_10033 189
191 3300044765 Ga0466970_0008058 Ga0466970_0008058_4421_4990 189
192 3300044765 Ga0466970_0088042 Ga0466970_0088042_893_1462 189
193 3300046471 Ga0495650_0110105 Ga0495650_0110105_441_1010 189
194 3300046492 Ga0495585_0000341 Ga0495585_0000341_32847_33416 189
195 3300046492 Ga0495585_0000832 Ga0495585_0000832_10886_11455 189
196 3300046518 Ga0495631_0220724 Ga0495631_0220724_127_696 189
197 3300046519 Ga0495632_0178612 Ga0495632_0178612_385_954 189
198 3300046524 Ga0495648_0108724 Ga0495648_0108724_231_800 189
199 3300046530 Ga0495654_0027533 Ga0495654_0027533_322_891 189
200 3300046538 Ga0495609_0005796 Ga0495609_0005796_4128_4697 189
201 3300046557 Ga0495622_0030109 Ga0495622_0030109_18_587 189
202 3300046616 Ga0495668_0000009 Ga0495668_0000009_310623_311192 189
203 3300046660 Ga0495625_0000636 Ga0495625_0000636_11033_11602 189
204 3300046683 Ga0495658_0006049 Ga0495658_0006049_3248_3817 189
205 3300046691 Ga0495670_0588134 Ga0495670_0588134_22_591 189
206 3300046810 Ga0495660_0002852 Ga0495660_0002852_6830_7399 189
207 3300046810 Ga0495660_0190483 Ga0495660_0190483_312_881 189
208 3300047443 Ga0495687_002666 Ga0495687_002666_3276_3845 189
209 3300048903 Ga0496100_0000040 Ga0496100_0000040_54840_55514 189
210 3300048904 Ga0496101_0000175 Ga0496101_0000175_32078_32752 189
211 3300048905 Ga0496102_0000203 Ga0496102_0000203_34425_35099 189
212 3300048906 Ga0496103_0000309 Ga0496103_0000309_37065_37739 189
213 3300048907 Ga0496104_0084482 Ga0496104_0084482_569_1243 189
214 3300048909 Ga0496106_0571602 Ga0496106_0571602_39_713 189
215 3300048910 Ga0496107_0426157 Ga0496107_0426157_218_886 189
216 3300048916 Ga0496113_0171331 Ga0496113_0171331_418_1092 189
217 3300048918 Ga0496115_0940190 Ga0496115_0940190_34_603 189
218 3300048919 Ga0496116_0096603 Ga0496116_0096603_151_825 189
219 3300048920 Ga0496117_0000532 Ga0496117_0000532_24552_25226 189
220 3300048921 Ga0496118_0000206 Ga0496118_0000206_37310_37984 189
221 3300048924 Ga0496121_0000455 Ga0496121_0000455_37387_38061 189
222 3300048924 Ga0496121_0301549 Ga0496121_0301549_410_979 189
223 3300048925 Ga0496122_0013467 Ga0496122_0013467_1057_1626 189
224 3300048926 Ga0496123_0030001 Ga0496123_0030001_2527_3096 189
225 3300048926 Ga0496123_0324467 Ga0496123_0324467_24_698 189
226 3300048927 Ga0496124_0107542 Ga0496124_0107542_1140_1814 189
227 3300048928 Ga0496125_0174926 Ga0496125_0174926_704_1378 189
228 3300048928 Ga0496125_0263969 Ga0496125_0263969_382_951 189
229 3300048929 Ga0496126_0072186 Ga0496126_0072186_1981_2655 189
230 3300049460 Ga0495682_0076455 Ga0495682_0076455_155_724 189
231 3300049758 Ga0501241_000971 Ga0501241_000971_831_1400 189
232 3300049758 Ga0501241_003743 Ga0501241_003743_376_945 189
233 3300049766 Ga0501269_000880 Ga0501269_000880_3294_3863 189
234 3300050493 nmdc:mga0k408_1458_c1 nmdc:mga0k408_1458_c1_6672_7364 189
235 3300050493 nmdc:mga0k408_440828_c1 nmdc:mga0k408_440828_c1_14_583 189
236 3300053130 Ga0500642_0006201 Ga0500642_0006201_1236_1805 189
237 3300053158 Ga0500627_0008477 Ga0500627_0008477_2267_2836 189
238 3300053730 Ga0500645_024267 Ga0500645_024267_1033_1602 189

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01872

RibD_C

RibD C-terminal domain

43

219

0.62

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jtw-assembly2.cif.gz_B-3 crystal structure of putative dihydrofolate reductase (yp_805003.1) from pediococcus pentosaceus atcc 25745 at 1.90 a resolution 0.6443 1 183
3jtw-assembly1.cif.gz_A-2 crystal structure of putative dihydrofolate reductase (yp_805003.1) from pediococcus pentosaceus atcc 25745 at 1.90 a resolution 0.6331 1 183
3jtw-assembly2.cif.gz_B-3 crystal structure of putative dihydrofolate reductase (yp_805003.1) from pediococcus pentosaceus atcc 25745 at 1.90 a resolution 0.6313 1 183
5hi6-assembly1.cif.gz_A the high resolution structure of dihydrofolate reductase from yersinia pestis complex with methotrexate as closed form 0.6237 1 183
3jtw-assembly1.cif.gz_A-2 crystal structure of putative dihydrofolate reductase (yp_805003.1) from pediococcus pentosaceus atcc 25745 at 1.90 a resolution 0.6207 1 183
ID Description Score Start End Superfamily
af_Q9W4F8_52_264_1.10.510.10 Mainly Alpha;Orthogonal Bundle;Transferase(Phosphotransferase); domain 1;Transferase(Phosphotransferase) domain 1 0.6798 164 185 1.10.510.10
3jtwB00 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.6305 1 183 3.40.430.10
2gd9B01 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.6284 2 182 3.40.430.10
2xw7B00 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.6267 1 186 3.40.430.10
2gd9B01 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.6249 2 182 3.40.430.10
ID Description Score Start End GO Terms
AF-A0A529ZDE2-F1-model_v4 Dihydrofolate reductase 0.9175 39 126
AF-A0A529NCM0-F1-model_v4 Dihydrofolate reductase 0.905 1 153 GO:0008703
GO:0009231
AF-A0A561SYS1-F1-model_v4 Dihydrofolate reductase 0.9026 1 184 GO:0008703
GO:0009231
AF-A0A1X8WLT8-F1-model_v4 deleted 0.888 33 133
AF-A0A561SYS1-F1-model_v4 Dihydrofolate reductase 0.8878 1 184 GO:0008703
GO:0009231

Feature Viewer

pLDDT pTM Quality
86.82 0.8 High
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Predicted Structure (AlphaFold2)

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