F350912

General Info

Members Datasets Scaffolds Average Seq Length
238 143 228 475

Family's Representative Sequence

Representative Sequence 3300009176|Ga0105242_10004883|Ga0105242_100048835
Length 516
Sequence MAVITIAHLTIRTIVCPILWQKAFTCNLFRNLAATSNSNIFMQQDRRKFLRHFAAGTGALAAGLPALATVKTDQEDRKKSISDTGIQQFNMSGYAAPKIETVRVGIIGLGMRGGDAVERLSYIEGLEIVALCDKLPDRVTKAQGTLEKMGRPKAKEFSGENGWKTLCESKDIDLVYTPTPWDLHAPIALLAMNNGKHAATEVNAGLTIDACWQLVETSEKTKKHCMMLENCCYDFFELLTLNMVRNGLFGELLHAEGAYIHNLSTDYLFNKNAYVDMWRLKQNIKHNGNLYPTHGLGPIAQCLDINRGDKMDYLTSTSTNDFTLNNIAKELAAKDPFFKEYVNKPYRGNMNTTVIRTHKGKTIMLQHDVSSTRPYSRLHLLSGTKGVAQKYPDPARIAFGHEWIKEEELKDLYEKYSPPIVKHIGTIAKDVGGHGGMDFIMDWRLIDCLRNGLPLDQDVYDAAAWSSIFALSGQSVGNKSKTVDVPDFTRGAWKTNKKVDLTLDGGGSTQVRAKKS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
3 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
4 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
5 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
6 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
7 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
8 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
9 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
10 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
11 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
12 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
13 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
14 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
19 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
20 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
21 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
22 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
23 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
24 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
25 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
26 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
27 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
28 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
29 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
30 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
31 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
32 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
33 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
34 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
35 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
36 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
37 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
38 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
39 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
40 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
41 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
42 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
43 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
44 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
45 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
48 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
49 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
50 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
51 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
52 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
54 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
55 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
56 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
57 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
61 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
62 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
63 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
66 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
67 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
68 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
69 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
70 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
71 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
72 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
73 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
74 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
77 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
110 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
111 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
112 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
115 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
116 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
117 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
118 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
123 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
124 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
125 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
126 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
127 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
128 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
129 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
130 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
135 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
136 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
137 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
138 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
140 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
141 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
142 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
143 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.8
Metatranscriptomes 0
Isolates 4.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.36
Nodule 0
Rhizoplane 1.26
Rhizosphere 94.12
Stem 0
Stem Tuber 0
Unclassified 1.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1556306 2162886007 Bacteria 2813
2 JGI24751J29686_10002314 3300002459 Unclassified 3851
3 rootH1_10059944 3300003316 Bacteria 5320
4 JGI25160J50197_1001224 3300003354 Bacteria 13023
5 Ga0055536_1005394 3300003781 Bacteria 6264
6 Ga0065165_1000057 3300005262 Bacteria 185971
7 Ga0065165_1000226 3300005262 Bacteria 99005
8 Ga0065714_10071360 3300005288 Bacteria 3597
9 Ga0065714_10102885 3300005288 Bacteria 1599
10 Ga0065704_10099228 3300005289 Bacteria 2320
11 Ga0065712_10067980 3300005290 Bacteria 18253
12 Ga0070676_10085617 3300005328 Bacteria 1921
13 Ga0070683_100015439 3300005329 Bacteria 6708
14 Ga0070690_100034445 3300005330 Unclassified 3173
15 Ga0070670_100004569 3300005331 Bacteria 11610
16 Ga0070670_100044897 3300005331 Bacteria 3798
17 Ga0068869_100002999 3300005334 Bacteria 10259
18 Ga0068869_100130595 3300005334 Unclassified 1930
19 Ga0070689_100022083 3300005340 Bacteria 4748
20 Ga0070661_100000952 3300005344 Bacteria 20625
21 Ga0070661_100004252 3300005344 Bacteria 9876
22 Ga0070661_100100255 3300005344 Bacteria 2153
23 Ga0070668_100007086 3300005347 Bacteria 8305
24 Ga0070669_100049174 3300005353 Bacteria 3078
25 Ga0070669_100161971 3300005353 Bacteria 1739
26 Ga0070675_100024589 3300005354 Bacteria 4823
27 Ga0070671_100051984 3300005355 Unclassified 3408
28 Ga0070671_100182290 3300005355 Bacteria 1778
29 Ga0070674_100082424 3300005356 Bacteria 2301
30 Ga0070674_100147457 3300005356 Bacteria 1772
31 Ga0070673_100008237 3300005364 Bacteria 6923
32 Ga0070673_100030315 3300005364 Bacteria 4045
33 Ga0070688_100022468 3300005365 Bacteria 3697
34 Ga0070667_100012926 3300005367 Bacteria 6900
35 Ga0070667_100065208 3300005367 Unclassified 3092
36 Ga0070700_100070492 3300005441 Bacteria 2229
37 Ga0070662_100008755 3300005457 Bacteria 6602
38 Ga0070662_100009262 3300005457 Bacteria 6434
39 Ga0070662_100029759 3300005457 Bacteria 3814
40 Ga0068867_100105439 3300005459 Bacteria 2158
41 Ga0070685_10001191 3300005466 Bacteria 13891
42 Ga0070685_10012906 3300005466 Bacteria 4398
43 Ga0070685_10040407 3300005466 Bacteria 2654
44 Ga0070698_100000267 3300005471 Bacteria 52849
45 Ga0070698_100006151 3300005471 Bacteria 13074
46 Ga0070684_100001403 3300005535 Bacteria 17339
47 Ga0070684_100026688 3300005535 Bacteria 4868
48 Ga0068853_100002491 3300005539 Bacteria 13803
49 Ga0068853_100155027 3300005539 Bacteria 2063
50 Ga0070686_100123959 3300005544 Bacteria 1778
51 Ga0070664_100000140 3300005564 Bacteria 49126
52 Ga0070664_100008154 3300005564 Bacteria 8472
53 Ga0068857_100000920 3300005577 Bacteria 22265
54 Ga0068857_100025219 3300005577 Bacteria 5236
55 Ga0068854_100009084 3300005578 Bacteria 6408
56 Ga0068852_100122975 3300005616 Bacteria 2379
57 Ga0068859_100000646 3300005617 Bacteria 34856
58 Ga0068859_100019736 3300005617 Bacteria 6767
59 Ga0068861_100004391 3300005719 Bacteria 9452
60 Ga0068870_10019151 3300005840 Bacteria 3316
61 Ga0068863_100012446 3300005841 Bacteria 8216
62 Ga0068863_100159125 3300005841 Bacteria 2163
63 Ga0068860_100036421 3300005843 Bacteria 4715
64 Ga0068860_100193530 3300005843 Bacteria 1968
65 Ga0068862_100181150 3300005844 Bacteria 1891
66 Ga0097621_100024664 3300006237 Bacteria 4700
67 Ga0068871_100029143 3300006358 Bacteria 4334
68 Ga0075430_100005079 3300006846 Bacteria 11078
69 Ga0075434_100031641 3300006871 Bacteria 5216
70 Ga0075429_100040612 3300006880 Bacteria 4051
71 Ga0075429_100047514 3300006880 Bacteria 3734
72 Ga0068865_100104451 3300006881 Bacteria 2079
73 Ga0097620_100000646 3300006931 Bacteria 34856
74 Ga0097620_100019736 3300006931 Bacteria 6767
75 Ga0111539_10033864 3300009094 Bacteria 6198
76 Ga0111539_10170764 3300009094 Bacteria 2541
77 Ga0105243_10000043 3300009148 Bacteria 158809
78 Ga0105243_10044154 3300009148 Bacteria 3495
79 Ga0105242_10004883 3300009176 Bacteria 10380
80 Ga0105237_10000015 3300009545 Bacteria 266079
81 Ga0105249_10000177 3300009553 Bacteria 74897
82 Ga0105249_10002872 3300009553 Bacteria 14869
83 Ga0105249_10099343 3300009553 Bacteria 2735
84 Ga0157370_10024600 3300013104 Bacteria 5963
85 Ga0157370_10175247 3300013104 Bacteria 1993
86 Ga0157374_10002053 3300013296 Bacteria 16926
87 Ga0157374_10005324 3300013296 Bacteria 10809
88 Ga0157374_10040502 3300013296 Bacteria 4291
89 Ga0157378_10013867 3300013297 Bacteria 7050
90 Ga0157378_10017149 3300013297 Bacteria 6348
91 Ga0157378_10277511 3300013297 Bacteria 1614
92 Ga0163162_10006384 3300013306 Bacteria 11415
93 Ga0163162_10046726 3300013306 Bacteria 4340
94 Ga0163162_10127779 3300013306 Bacteria 2649
95 Ga0157375_10004139 3300013308 Bacteria 12585
96 Ga0157375_10006368 3300013308 Bacteria 10292
97 Ga0157375_10037479 3300013308 Bacteria 4647
98 Ga0157375_10047323 3300013308 Bacteria 4200
99 Ga0163163_10000088 3300014325 Bacteria 101126
100 Ga0163163_10020832 3300014325 Bacteria 6181
101 Ga0157380_10021147 3300014326 Bacteria 4877
102 Ga0157380_10038219 3300014326 Bacteria 3726
103 Ga0157377_10008905 3300014745 Bacteria 4910
104 Ga0157377_10047087 3300014745 Unclassified 2414
105 Ga0157377_10047642 3300014745 Bacteria 2402
106 Ga0157379_10039299 3300014968 Bacteria 4221
107 Ga0157376_10008773 3300014969 Bacteria 7312
108 Ga0157376_10012735 3300014969 Bacteria 6254
109 Ga0157376_10035205 3300014969 Bacteria 4049
110 Ga0163161_10001941 3300017792 Bacteria 15074
111 Ga0163161_10022559 3300017792 Unclassified 4433
112 Ga0209676_1000734 3300025292 Bacteria 44835
113 Ga0209676_1002773 3300025292 Bacteria 11699
114 Ga0207426_1000002 3300025302 Bacteria 1249660
115 Ga0207682_10041449 3300025893 Bacteria 1879
116 Ga0207682_10044234 3300025893 Unclassified 1825
117 Ga0207642_10002997 3300025899 Bacteria 5289
118 Ga0207688_10003710 3300025901 Bacteria 8335
119 Ga0207680_10047060 3300025903 Bacteria 2553
120 Ga0207647_10038379 3300025904 Bacteria 3029
121 Ga0207645_10008943 3300025907 Bacteria 6955
122 Ga0207645_10012357 3300025907 Bacteria 5795
123 Ga0207645_10120552 3300025907 Bacteria 1702
124 Ga0207671_10000007 3300025914 Bacteria 825758
125 Ga0207649_10009515 3300025920 Bacteria 5319
126 Ga0207681_10035502 3300025923 Bacteria 3285
127 Ga0207644_10046685 3300025931 Unclassified 3087
128 Ga0207644_10132064 3300025931 Bacteria 1913
129 Ga0207706_10005985 3300025933 Bacteria 11309
130 Ga0207706_10017309 3300025933 Bacteria 6492
131 Ga0207706_10035951 3300025933 Bacteria 4401
132 Ga0207686_10000470 3300025934 Bacteria 26697
133 Ga0207686_10026236 3300025934 Bacteria 3398
134 Ga0207709_10000021 3300025935 Bacteria 386722
135 Ga0207670_10002622 3300025936 Bacteria 9460
136 Ga0207670_10005472 3300025936 Bacteria 6973
137 Ga0207691_10033060 3300025940 Bacteria 4817
138 Ga0207691_10051852 3300025940 Bacteria 3749
139 Ga0207711_10137842 3300025941 Bacteria 2193
140 Ga0207689_10002859 3300025942 Bacteria 15921
141 Ga0207689_10002870 3300025942 Bacteria 15893
142 Ga0207689_10006858 3300025942 Bacteria 10013
143 Ga0207661_10001545 3300025944 Bacteria 15653
144 Ga0207661_10040501 3300025944 Bacteria 3662
145 Ga0207679_10000266 3300025945 Bacteria 39927
146 Ga0207679_10002436 3300025945 Bacteria 11462
147 Ga0207679_10019275 3300025945 Bacteria 4580
148 Ga0207679_10139393 3300025945 Bacteria 1958
149 Ga0207651_10016957 3300025960 Bacteria 4288
150 Ga0207651_10035727 3300025960 Unclassified 3236
151 Ga0207712_10001667 3300025961 Bacteria 14917
152 Ga0207712_10003131 3300025961 Bacteria 10546
153 Ga0207668_10029337 3300025972 Bacteria 3605
154 Ga0207658_10148036 3300025986 Bacteria 1909
155 Ga0207703_10041197 3300026035 Bacteria 3699
156 Ga0207678_10046423 3300026067 Bacteria 3755
157 Ga0207641_10003772 3300026088 Bacteria 13304
158 Ga0207648_10006218 3300026089 Bacteria 11901
159 Ga0207648_10010932 3300026089 Bacteria 8577
160 Ga0207648_10062279 3300026089 Bacteria 3252
161 Ga0207676_10014814 3300026095 Bacteria 5617
162 Ga0207674_10002088 3300026116 Bacteria 25283
163 Ga0207683_10015834 3300026121 Bacteria 6420
164 Ga0268265_10137048 3300028380 Bacteria 2043
165 Ga0268264_10058675 3300028381 Bacteria 3223
166 Ga0307515_10000001 3300028794 Bacteria 4259510
167 Ga0316181_1248553 3300030744 Bacteria 22193
168 Ga0265327_10000087 3300031251 Bacteria 198174
169 Ga0307410_10000027 3300031852 Bacteria 52776
170 Ga0307414_10001079 3300032004 Bacteria 13944
171 Ga0307414_10002369 3300032004 Bacteria 9853
172 Ga0307414_10008686 3300032004 Bacteria 5784
173 Ga0307414_10057891 3300032004 Bacteria 2727
174 Ga0307414_10085054 3300032004 Bacteria 2329
175 Ga0373937_0074510 3300036401 Bacteria 3132
176 Ga0395905_0001769 3300037471 Bacteria 25100
177 Ga0439441_003696 3300042001 Bacteria 2275
178 Ga0439449_0019966 3300042007 Bacteria 2512
179 Ga0450894_003949 3300042131 Bacteria 1937
180 Ga0451577_0000607 3300042876 Bacteria 57672
181 Ga0451577_0001556 3300042876 Bacteria 30086
182 Ga0451577_0024112 3300042876 Bacteria 5536
183 Ga0453683_0000151 3300044673 Bacteria 102293
184 Ga0453683_0001717 3300044673 Bacteria 18210
185 Ga0453683_0007117 3300044673 Bacteria 7620
186 Ga0453683_0018548 3300044673 Bacteria 4466
187 Ga0453683_0024512 3300044673 Bacteria 3837
188 Ga0453684_0000081 3300044712 Bacteria 402985
189 Ga0453684_0001294 3300044712 Bacteria 74327
190 Ga0453684_0001410 3300044712 Bacteria 69337
191 Ga0453684_0005919 3300044712 Bacteria 23717
192 Ga0453684_0007572 3300044712 Bacteria 19913
193 Ga0453684_0019750 3300044712 Bacteria 10229
194 Ga0453684_0026802 3300044712 Bacteria 8305
195 Ga0453684_0053734 3300044712 Bacteria 5255
196 Ga0453684_0344733 3300044712 Bacteria 1681
197 Ga0453684_0421613 3300044712 Bacteria 1490
198 Ga0451576_0000190 3300045051 Bacteria 154484
199 Ga0451576_0000279 3300045051 Bacteria 125074
200 Ga0451576_0000294 3300045051 Bacteria 122276
201 Ga0451576_0000404 3300045051 Bacteria 100847
202 Ga0451576_0002421 3300045051 Bacteria 27947
203 Ga0451576_0004151 3300045051 Bacteria 19073
204 Ga0451576_0006731 3300045051 Bacteria 14000
205 Ga0451576_0009087 3300045051 Bacteria 11566
206 Ga0451576_0025228 3300045051 Bacteria 6406
207 Ga0495592_0005039 3300046454 Bacteria 9719
208 Ga0495650_0050877 3300046471 Bacteria 1710
209 Ga0495643_0048338 3300046522 Bacteria 2300
210 Ga0495634_0057495 3300046642 Bacteria 2596
211 Ga0495684_0067172 3300047471 Bacteria 2727
212 Ga0496110_0060942 3300048913 Bacteria 3329
213 Ga0496110_0092715 3300048913 Bacteria 2703
214 Ga0496111_0142835 3300048914 Bacteria 1774
215 Ga0501032_0063790 3300049569 Bacteria 2466
216 Ga0501043_0015198 3300049579 Bacteria 6027
217 Ga0501046_0022853 3300049580 Bacteria 5150
218 Ga0501048_0032343 3300049582 Bacteria 3780
219 Ga0501067_0017476 3300049583 Unclassified 3967
220 Ga0501070_0034550 3300049586 Bacteria 4226
221 Ga0501238_002268 3300049671 Bacteria 2285
222 Ga0501083_0007104 3300049744 Bacteria 7952
223 Ga0501035_0019195 3300049822 Bacteria 6294
224 Ga0501044_0026292 3300049823 Bacteria 6163
225 nmdc:mga06r32_24932_c1 3300050510 Bacteria 5558
226 nmdc:mga0n895_133034_c1 3300050512 Bacteria 2513
227 Ga0500611_000004 3300053727 Bacteria 253326
228 Ga0501084_0043224 3300054114 Bacteria 3770

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300031852 Ga0307410_10000027 Ga0307410_1000002726 418
2 3300049671 Ga0501238_002268 Ga0501238_002268_975_2255 418
3 3300025933 Ga0207706_10017309 Ga0207706_100173092 428
4 3300025934 Ga0207686_10026236 Ga0207686_100262362 428
5 3300044712 Ga0453684_0344733 Ga0453684_0344733_323_1615 429
6 3300037471 Ga0395905_0001769 Ga0395905_0001769_18093_19454 431
7 3300044712 Ga0453684_0421613 Ga0453684_0421613_129_1460 433
8 3300009545 Ga0105237_10000015 Ga0105237_10000015239 435
9 3300025914 Ga0207671_10000007 Ga0207671_10000007541 435
10 iso_pu_bacteria 2919186247 2919188063 436
11 iso_pu_bacteria 2939664404 2939664670 436
12 3300005356 Ga0070674_100082424 Ga0070674_1000824242 440
13 3300013104 Ga0157370_10175247 Ga0157370_101752472 440
14 3300026089 Ga0207648_10062279 Ga0207648_100622792 440
15 iso_pu_bacteria 2852627209 2852629911 440
16 3300044712 Ga0453684_0005919 Ga0453684_0005919_9550_10959 441
17 iso_pu_bacteria 2522125168 2522547652 441
18 3300025893 Ga0207682_10041449 Ga0207682_100414491 443
19 3300003781 Ga0055536_1005394 Ga0055536_10053945 445
20 3300005262 Ga0065165_1000057 Ga0065165_100005744 445
21 3300005262 Ga0065165_1000226 Ga0065165_100022677 445
22 3300005289 Ga0065704_10099228 Ga0065704_100992282 445
23 3300013104 Ga0157370_10024600 Ga0157370_100246003 445
24 3300025292 Ga0209676_1000734 Ga0209676_100073442 445
25 3300025292 Ga0209676_1002773 Ga0209676_10027732 445
26 3300032004 Ga0307414_10008686 Ga0307414_100086864 445
27 3300013306 Ga0163162_10006384 Ga0163162_1000638410 446
28 3300014745 Ga0157377_10047642 Ga0157377_100476423 446
29 3300044673 Ga0453683_0000151 Ga0453683_0000151_13251_14699 446
30 3300045051 Ga0451576_0000404 Ga0451576_0000404_86179_87627 446
31 3300048913 Ga0496110_0060942 Ga0496110_0060942_1829_3223 446
32 3300048914 Ga0496111_0142835 Ga0496111_0142835_200_1594 446
33 3300042876 Ga0451577_0000607 Ga0451577_0000607_39998_41395 447
34 3300044712 Ga0453684_0001294 Ga0453684_0001294_45690_47087 447
35 3300045051 Ga0451576_0000279 Ga0451576_0000279_78121_79518 447
36 3300005330 Ga0070690_100034445 Ga0070690_1000344452 448
37 3300005355 Ga0070671_100051984 Ga0070671_1000519842 448
38 3300005841 Ga0068863_100159125 Ga0068863_1001591251 448
39 3300013297 Ga0157378_10013867 Ga0157378_100138673 448
40 3300025931 Ga0207644_10046685 Ga0207644_100466852 448
41 3300032004 Ga0307414_10085054 Ga0307414_100850542 449
42 3300045051 Ga0451576_0025228 Ga0451576_0025228_3891_5300 450
43 iso_pu_bacteria 2522125168 2522547902 450
44 3300005564 Ga0070664_100008154 Ga0070664_1000081543 451
45 3300005617 Ga0068859_100019736 Ga0068859_1000197363 451
46 3300006931 Ga0097620_100019736 Ga0097620_1000197363 451
47 3300025907 Ga0207645_10120552 Ga0207645_101205522 451
48 3300025920 Ga0207649_10009515 Ga0207649_100095153 451
49 3300025936 Ga0207670_10002622 Ga0207670_100026224 451
50 3300025945 Ga0207679_10002436 Ga0207679_100024364 451
51 3300025945 Ga0207679_10139393 Ga0207679_101393932 451
52 3300025986 Ga0207658_10148036 Ga0207658_101480362 451
53 3300026095 Ga0207676_10014814 Ga0207676_100148142 451
54 3300030744 Ga0316181_1248553 Ga0316181_124855323 451
55 3300044712 Ga0453684_0026802 Ga0453684_0026802_5787_7220 451
56 3300042007 Ga0439449_0019966 Ga0439449_0019966_662_2083 452
57 3300042876 Ga0451577_0001556 Ga0451577_0001556_20919_22343 453
58 3300044673 Ga0453683_0024512 Ga0453683_0024512_2354_3778 453
59 3300044712 Ga0453684_0001410 Ga0453684_0001410_60170_61594 453
60 3300045051 Ga0451576_0006731 Ga0451576_0006731_11353_12777 453
61 3300005288 Ga0065714_10071360 Ga0065714_100713602 454
62 3300005288 Ga0065714_10102885 Ga0065714_101028851 454
63 3300032004 Ga0307414_10057891 Ga0307414_100578912 454
64 3300005471 Ga0070698_100006151 Ga0070698_1000061517 455
65 3300009148 Ga0105243_10044154 Ga0105243_100441542 455
66 3300009176 Ga0105242_10004883 Ga0105242_100048835 455
67 3300013297 Ga0157378_10277511 Ga0157378_102775112 455
68 3300032004 Ga0307414_10001079 Ga0307414_100010796 455
69 3300042131 Ga0450894_003949 Ga0450894_003949_314_1783 456
70 3300046522 Ga0495643_0048338 Ga0495643_0048338_370_1839 456
71 3300049569 Ga0501032_0063790 Ga0501032_0063790_17_1444 456
72 3300049579 Ga0501043_0015198 Ga0501043_0015198_4314_5795 456
73 3300049580 Ga0501046_0022853 Ga0501046_0022853_1079_2560 456
74 3300049582 Ga0501048_0032343 Ga0501048_0032343_828_2309 456
75 3300049583 Ga0501067_0017476 Ga0501067_0017476_930_2411 456
76 3300049586 Ga0501070_0034550 Ga0501070_0034550_350_1831 456
77 3300049744 Ga0501083_0007104 Ga0501083_0007104_3531_5012 456
78 3300049822 Ga0501035_0019195 Ga0501035_0019195_2673_4154 456
79 3300049823 Ga0501044_0026292 Ga0501044_0026292_3211_4692 456
80 3300053727 Ga0500611_000004 Ga0500611_000004_223550_224986 456
81 3300054114 Ga0501084_0043224 Ga0501084_0043224_2145_3626 456
82 3300003354 JGI25160J50197_1001224 JGI25160J50197_10012247 457
83 3300014326 Ga0157380_10038219 Ga0157380_100382194 457
84 3300025302 Ga0207426_1000002 Ga0207426_1000002739 457
85 3300044673 Ga0453683_0018548 Ga0453683_0018548_281_1717 457
86 3300002459 JGI24751J29686_10002314 JGI24751J29686_100023141 458
87 3300005329 Ga0070683_100015439 Ga0070683_1000154395 458
88 3300005331 Ga0070670_100004569 Ga0070670_1000045692 458
89 3300005334 Ga0068869_100002999 Ga0068869_1000029993 458
90 3300005340 Ga0070689_100022083 Ga0070689_1000220834 458
91 3300005344 Ga0070661_100000952 Ga0070661_10000095211 458
92 3300005344 Ga0070661_100004252 Ga0070661_1000042524 458
93 3300005344 Ga0070661_100100255 Ga0070661_1001002552 458
94 3300005353 Ga0070669_100161971 Ga0070669_1001619712 458
95 3300005354 Ga0070675_100024589 Ga0070675_1000245894 458
96 3300005355 Ga0070671_100182290 Ga0070671_1001822901 458
97 3300005364 Ga0070673_100030315 Ga0070673_1000303152 458
98 3300005365 Ga0070688_100022468 Ga0070688_1000224683 458
99 3300005457 Ga0070662_100008755 Ga0070662_1000087553 458
100 3300005457 Ga0070662_100009262 Ga0070662_1000092622 458
101 3300005457 Ga0070662_100029759 Ga0070662_1000297593 458
102 3300005466 Ga0070685_10012906 Ga0070685_100129064 458
103 3300005466 Ga0070685_10040407 Ga0070685_100404072 458
104 3300005471 Ga0070698_100000267 Ga0070698_10000026721 458
105 3300005535 Ga0070684_100001403 Ga0070684_1000014035 458
106 3300005535 Ga0070684_100026688 Ga0070684_1000266884 458
107 3300005539 Ga0068853_100002491 Ga0068853_1000024916 458
108 3300005544 Ga0070686_100123959 Ga0070686_1001239592 458
109 3300005564 Ga0070664_100000140 Ga0070664_10000014015 458
110 3300005577 Ga0068857_100000920 Ga0068857_10000092018 458
111 3300005577 Ga0068857_100025219 Ga0068857_1000252193 458
112 3300005578 Ga0068854_100009084 Ga0068854_1000090845 458
113 3300005843 Ga0068860_100193530 Ga0068860_1001935301 458
114 3300005844 Ga0068862_100181150 Ga0068862_1001811502 458
115 3300006846 Ga0075430_100005079 Ga0075430_1000050794 458
116 3300006880 Ga0075429_100040612 Ga0075429_1000406122 458
117 3300006880 Ga0075429_100047514 Ga0075429_1000475142 458
118 3300009094 Ga0111539_10170764 Ga0111539_101707644 458
119 3300009553 Ga0105249_10099343 Ga0105249_100993433 458
120 3300013296 Ga0157374_10002053 Ga0157374_100020534 458
121 3300013296 Ga0157374_10005324 Ga0157374_100053243 458
122 3300013306 Ga0163162_10046726 Ga0163162_100467263 458
123 3300013306 Ga0163162_10127779 Ga0163162_101277791 458
124 3300013308 Ga0157375_10004139 Ga0157375_100041393 458
125 3300013308 Ga0157375_10037479 Ga0157375_100374793 458
126 3300013308 Ga0157375_10047323 Ga0157375_100473232 458
127 3300014325 Ga0163163_10000088 Ga0163163_1000008876 458
128 3300014325 Ga0163163_10020832 Ga0163163_100208323 458
129 3300014745 Ga0157377_10008905 Ga0157377_100089053 458
130 3300014745 Ga0157377_10047087 Ga0157377_100470873 458
131 3300014968 Ga0157379_10039299 Ga0157379_100392993 458
132 3300014969 Ga0157376_10008773 Ga0157376_100087734 458
133 3300014969 Ga0157376_10035205 Ga0157376_100352052 458
134 3300017792 Ga0163161_10022559 Ga0163161_100225593 458
135 3300025904 Ga0207647_10038379 Ga0207647_100383793 458
136 3300025907 Ga0207645_10012357 Ga0207645_100123575 458
137 3300025931 Ga0207644_10132064 Ga0207644_101320642 458
138 3300025933 Ga0207706_10005985 Ga0207706_100059853 458
139 3300025933 Ga0207706_10035951 Ga0207706_100359511 458
140 3300025936 Ga0207670_10005472 Ga0207670_100054724 458
141 3300025942 Ga0207689_10002859 Ga0207689_1000285913 458
142 3300025944 Ga0207661_10001545 Ga0207661_100015455 458
143 3300025944 Ga0207661_10040501 Ga0207661_100405013 458
144 3300025945 Ga0207679_10000266 Ga0207679_1000026631 458
145 3300025945 Ga0207679_10019275 Ga0207679_100192754 458
146 3300025960 Ga0207651_10035727 Ga0207651_100357273 458
147 3300026035 Ga0207703_10041197 Ga0207703_100411972 458
148 3300026067 Ga0207678_10046423 Ga0207678_100464233 458
149 3300026089 Ga0207648_10010932 Ga0207648_100109325 458
150 3300026116 Ga0207674_10002088 Ga0207674_1000208813 458
151 3300028380 Ga0268265_10137048 Ga0268265_101370482 458
152 3300028381 Ga0268264_10058675 Ga0268264_100586753 458
153 3300036401 Ga0373937_0074510 Ga0373937_0074510_481_1911 458
154 3300042001 Ga0439441_003696 Ga0439441_003696_525_1949 458
155 3300044673 Ga0453683_0007117 Ga0453683_0007117_4789_6237 458
156 3300044712 Ga0453684_0019750 Ga0453684_0019750_2685_4133 458
157 3300045051 Ga0451576_0002421 Ga0451576_0002421_8097_9545 458
158 3300046454 Ga0495592_0005039 Ga0495592_0005039_6229_7659 458
159 3300046642 Ga0495634_0057495 Ga0495634_0057495_464_1894 458
160 3300047471 Ga0495684_0067172 Ga0495684_0067172_835_2265 458
161 3300048913 Ga0496110_0092715 Ga0496110_0092715_475_1908 458
162 3300050510 nmdc:mga06r32_24932_c1 nmdc:mga06r32_24932_c1_394_1827 458
163 3300005290 Ga0065712_10067980 Ga0065712_1006798013 459
164 3300005331 Ga0070670_100044897 Ga0070670_1000448975 459
165 3300005353 Ga0070669_100049174 Ga0070669_1000491743 459
166 3300005356 Ga0070674_100147457 Ga0070674_1001474571 459
167 3300005364 Ga0070673_100008237 Ga0070673_1000082372 459
168 3300005367 Ga0070667_100012926 Ga0070667_1000129266 459
169 3300005367 Ga0070667_100065208 Ga0070667_1000652082 459
170 3300005459 Ga0068867_100105439 Ga0068867_1001054392 459
171 3300005466 Ga0070685_10001191 Ga0070685_1000119110 459
172 3300005539 Ga0068853_100155027 Ga0068853_1001550272 459
173 3300005616 Ga0068852_100122975 Ga0068852_1001229752 459
174 3300005840 Ga0068870_10019151 Ga0068870_100191512 459
175 3300005841 Ga0068863_100012446 Ga0068863_1000124464 459
176 3300005843 Ga0068860_100036421 Ga0068860_1000364212 459
177 3300006237 Ga0097621_100024664 Ga0097621_1000246644 459
178 3300006358 Ga0068871_100029143 Ga0068871_1000291432 459
179 3300006871 Ga0075434_100031641 Ga0075434_1000316414 459
180 3300006881 Ga0068865_100104451 Ga0068865_1001044512 459
181 3300009553 Ga0105249_10000177 Ga0105249_1000017739 459
182 3300009553 Ga0105249_10002872 Ga0105249_100028723 459
183 3300013296 Ga0157374_10040502 Ga0157374_100405025 459
184 3300013297 Ga0157378_10017149 Ga0157378_100171494 459
185 3300013308 Ga0157375_10006368 Ga0157375_100063685 459
186 3300014326 Ga0157380_10021147 Ga0157380_100211473 459
187 3300014969 Ga0157376_10012735 Ga0157376_100127357 459
188 3300017792 Ga0163161_10001941 Ga0163161_1000194112 459
189 3300025893 Ga0207682_10044234 Ga0207682_100442342 459
190 3300025899 Ga0207642_10002997 Ga0207642_100029972 459
191 3300025901 Ga0207688_10003710 Ga0207688_100037105 459
192 3300025903 Ga0207680_10047060 Ga0207680_100470603 459
193 3300025907 Ga0207645_10008943 Ga0207645_100089434 459
194 3300025934 Ga0207686_10000470 Ga0207686_1000047013 459
195 3300025940 Ga0207691_10033060 Ga0207691_100330604 459
196 3300025941 Ga0207711_10137842 Ga0207711_101378421 459
197 3300025942 Ga0207689_10002870 Ga0207689_1000287012 459
198 3300025960 Ga0207651_10016957 Ga0207651_100169573 459
199 3300025961 Ga0207712_10001667 Ga0207712_1000166712 459
200 3300025961 Ga0207712_10003131 Ga0207712_100031316 459
201 3300025972 Ga0207668_10029337 Ga0207668_100293374 459
202 3300026088 Ga0207641_10003772 Ga0207641_100037728 459
203 3300026089 Ga0207648_10006218 Ga0207648_100062184 459
204 3300026121 Ga0207683_10015834 Ga0207683_100158344 459
205 3300044712 Ga0453684_0053734 Ga0453684_0053734_3088_4560 459
206 3300045051 Ga0451576_0004151 Ga0451576_0004151_3800_5272 459
207 3300050512 nmdc:mga0n895_133034_c1 nmdc:mga0n895_133034_c1_256_1695 459
208 3300005334 Ga0068869_100130595 Ga0068869_1001305952 460
209 3300005347 Ga0070668_100007086 Ga0070668_1000070862 460
210 3300005719 Ga0068861_100004391 Ga0068861_1000043913 460
211 3300025942 Ga0207689_10006858 Ga0207689_100068589 460
212 3300045051 Ga0451576_0009087 Ga0451576_0009087_10087_11529 460
213 3300046471 Ga0495650_0050877 Ga0495650_0050877_60_1508 460
214 3300042876 Ga0451577_0024112 Ga0451577_0024112_511_1956 461
215 3300003316 rootH1_10059944 rootH1_100599442 462
216 3300025940 Ga0207691_10051852 Ga0207691_100518523 462
217 3300028794 Ga0307515_10000001 Ga0307515_100000011084 462
218 iso_pu_bacteria 2896344016 2896345982 462
219 3300005617 Ga0068859_100000646 Ga0068859_10000064620 463
220 3300006931 Ga0097620_100000646 Ga0097620_10000064620 463
221 3300031251 Ga0265327_10000087 Ga0265327_10000087139 463
222 3300044673 Ga0453683_0001717 Ga0453683_0001717_1179_2666 463
223 3300044712 Ga0453684_0000081 Ga0453684_0000081_295656_297104 463
224 3300045051 Ga0451576_0000190 Ga0451576_0000190_10518_12005 463
225 3300045051 Ga0451576_0000294 Ga0451576_0000294_107878_109326 463
226 iso_pu_bacteria 2890737413 2890739304 463
227 iso_pu_bacteria 2898713307 2898716516 463
228 3300005328 Ga0070676_10085617 Ga0070676_100856172 464
229 3300005441 Ga0070700_100070492 Ga0070700_1000704922 464
230 3300009094 Ga0111539_10033864 Ga0111539_100338642 464
231 3300025923 Ga0207681_10035502 Ga0207681_100355021 464
232 3300044712 Ga0453684_0007572 Ga0453684_0007572_12822_14312 464
233 iso_pu_bacteria 2896317667 2896321030 465
234 iso_pu_bacteria 3003233435 3003236923 465
235 3300032004 Ga0307414_10002369 Ga0307414_100023693 466
236 2162886007 SwRhRL2b_contig_1556306 SwRhRL2b_0281.00000260 468
237 3300009148 Ga0105243_10000043 Ga0105243_100000432 468
238 3300025935 Ga0207709_10000021 Ga0207709_10000021309 468

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

102

229

0.92

PF21252

Glyco_hydro_109_C

Glycosyl hydrolase 109, C-terminal domain

238

411

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6t2b-assembly2.cif.gz_D glycoside hydrolase family 109 from akkermansia muciniphila in complex with galnac and nad+. 0.949 32 445
6t2b-assembly1.cif.gz_C glycoside hydrolase family 109 from akkermansia muciniphila in complex with galnac and nad+. 0.9487 32 445
2ixa-assembly1.cif.gz_A a-zyme, n-acetylgalactosaminidase 0.9027 46 441
6t2b-assembly1.cif.gz_C glycoside hydrolase family 109 from akkermansia muciniphila in complex with galnac and nad+. 0.8999 32 445
6t2b-assembly2.cif.gz_D glycoside hydrolase family 109 from akkermansia muciniphila in complex with galnac and nad+. 0.8981 32 445
ID Description Score Start End Superfamily
2ixbA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9393 46 173 3.40.50.720
4n54A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9147 46 173 3.40.50.720
6jnkA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.91 46 171 3.40.50.720
3ezyC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.909 47 172 3.40.50.720
af_P77376_2_121_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9038 44 173 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0A257WA22-F1-model_v4 Acetylgalactosaminidase 0.9803 36 188 GO:0000166
GO:0016787
AF-A0A553FRG6-F1-model_v4 Acetylgalactosaminidase 0.9757 34 456 GO:0000166
GO:0016798
AF-A0A257WA22-F1-model_v4 Acetylgalactosaminidase 0.9678 36 188 GO:0000166
GO:0016787
AF-A0A2U1FC81-F1-model_v4 Oxidoreductase family protein 0.9651 31 253 GO:0000166
GO:0016798
AF-A0A7Y1YUW6-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9573 55 442 GO:0000166
GO:0016798

Feature Viewer

pLDDT pTM Quality
90.18 0.87 High
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Predicted Structure (AlphaFold2)

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