F349630

General Info

Members Datasets Scaffolds Average Seq Length
237 175 211 508

Family's Representative Sequence

Representative Sequence 3300003203|JGI25406J46586_10003541|JGI25406J46586_100035413
Length 549
Sequence MPTYLAPGVYVEEVDSGSRPIEGVGTAVAAFVGLAERGPFNTPTLVSNWTQFTTTFGNFIAGTYLAHAVYGYFMNGGGNCYVVRIGDDGSNGSKDGGDRKELASAPQAALGGRLKVVALNGDAKPGDIEVEITQAGGDAPTDDMFKLLIKQGGQVVEEFDRATVTRGKQNVATMVNASSKVIRIEDTGTGTMDKPEPGTVRTLTTDDYVGDVADRTGFGGLEAVDDVTMVCVPDLMSAYQQGAIDLETVQAVQLGMIAHCELMGDRVAILDPPPGLNAQQIKEWRVDKARYDSKYAALYWPWIKVFDPATGKIQFVPPGGHVAGVWGRNDDARGVHKAPANEVVRGAVELETQITKNEHGLLNPVGINCIRAFPGGGIRVYGARTLSSDPAWRYLNVRRLFNYLEESILNGTQWVVFEPNDDALWARIRRTIAAFLVNEWRKGALFGLTPDEAFYVKCDRETNPAEGIDAGQVICQIGVAPVKPAEFVVFQLTQFSGGTSLVAEXPSDPPEVDPHGASRPRQLRRPLIXAGIRRAQDGAGRRRAQAERP

Samples

Sample ID Description Type Environment
1 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
2 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
3 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
4 2643221576 Nocardioides sp. Root614 Isolate Unclassified
5 2643221590 Nocardioides sp. Root682 Isolate Unclassified
6 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
7 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
8 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
9 2808606372 Agromyces sp. 23-23 Isolate Unclassified
10 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
11 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
12 2842134933 Mycolicibacterium obuense SEMIA 442 Isolate Nodule
13 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
14 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
15 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
16 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
17 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
18 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
19 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
20 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
21 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
22 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
24 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
25 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
26 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
27 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
30 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
31 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
39 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
40 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
73 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
74 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
75 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
79 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
80 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
81 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
82 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
83 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
84 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
85 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
86 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
87 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
88 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
89 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
90 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
91 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
92 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
93 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
94 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
95 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
96 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
97 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
98 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
99 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
100 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
101 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
102 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
103 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
104 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
105 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
106 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
107 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
108 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
109 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
110 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
111 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
112 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
113 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
114 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
115 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
116 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
117 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
118 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
119 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
120 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
121 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
122 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
123 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
124 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
125 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
126 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
127 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
128 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
129 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
130 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
131 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
132 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
133 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
134 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
135 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
136 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
137 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
138 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
139 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
140 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
152 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
153 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
154 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
155 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
156 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
157 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
158 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
159 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
160 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
162 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
163 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
164 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
165 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
166 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
167 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
168 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
169 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
170 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
171 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
172 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
173 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
174 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
175 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.92
Metatranscriptomes 2.11
Isolates 10.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.69
Nodule 0.42
Rhizoplane 10.55
Rhizosphere 75.11
Stem 0
Stem Tuber 0
Unclassified 12.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10003541 3300003203 Bacteria 7321
2 rootH1_10164545 3300003323 Bacteria 4422
3 Ga0055540_1000040 3300003792 Bacteria 157728
4 Ga0070682_100080394 3300005337 Bacteria 2107
5 Ga0070713_100000475 3300005436 Bacteria 25564
6 Ga0070663_100000209 3300005455 Bacteria 29282
7 Ga0070706_100000185 3300005467 Bacteria 78882
8 Ga0070707_100000046 3300005468 Bacteria 105374
9 Ga0070699_100000161 3300005518 Bacteria 63799
10 Ga0070684_100192935 3300005535 Bacteria 1854
11 Ga0070665_100027911 3300005548 Bacteria 5684
12 Ga0068855_100156958 3300005563 Bacteria 2584
13 Ga0070664_100172760 3300005564 Bacteria 1917
14 Ga0068859_100004182 3300005617 Bacteria 14745
15 Ga0068860_100065611 3300005843 Bacteria 3447
16 Ga0081455_10000948 3300005937 Bacteria 37109
17 Ga0081538_10000536 3300005981 Bacteria 41868
18 Ga0081539_10000085 3300005985 Bacteria 217816
19 Ga0081539_10003971 3300005985 Bacteria 17100
20 Ga0070717_10000745 3300006028 Bacteria 21247
21 Ga0070717_10003415 3300006028 Bacteria 11357
22 Ga0075364_10003769 3300006051 Bacteria 8665
23 Ga0075428_100000228 3300006844 Bacteria 54657
24 Ga0075430_100000610 3300006846 Bacteria 27294
25 Ga0075430_100007199 3300006846 Bacteria 9385
26 Ga0075430_100090647 3300006846 Bacteria 2557
27 Ga0075431_100000012 3300006847 Bacteria 93206
28 Ga0075431_100004541 3300006847 Bacteria 13628
29 Ga0075431_100034014 3300006847 Bacteria 5252
30 Ga0075429_100000625 3300006880 Bacteria 27294
31 Ga0075429_100004584 3300006880 Bacteria 11877
32 Ga0075429_100010342 3300006880 Bacteria 8072
33 Ga0097620_100004182 3300006931 Bacteria 14745
34 Ga0105245_10001345 3300009098 Bacteria 22274
35 Ga0105245_10075856 3300009098 Bacteria 3062
36 Ga0105247_10004292 3300009101 Bacteria 9115
37 Ga0114129_10000696 3300009147 Bacteria 42382
38 Ga0114129_10083062 3300009147 Bacteria 4450
39 Ga0114129_10134979 3300009147 Bacteria 3386
40 Ga0105237_10008877 3300009545 Bacteria 10834
41 Ga0105239_10001323 3300010375 Bacteria 33361
42 Ga0157369_10013067 3300013105 Bacteria 9403
43 Ga0157372_10064996 3300013307 Bacteria 4095
44 Ga0197907_10388012 3300020069 Bacteria 2773
45 Ga0206356_10034981 3300020070 Bacteria 1675
46 Ga0206350_10528316 3300020080 Bacteria 2478
47 Ga0209051_1000107 3300025303 Bacteria 157903
48 Ga0207684_10000070 3300025910 Bacteria 185924
49 Ga0207671_10004373 3300025914 Bacteria 13548
50 Ga0207663_10142946 3300025916 Bacteria 1669
51 Ga0207662_10093121 3300025918 Bacteria 1856
52 Ga0207646_10000007 3300025922 Bacteria 478285
53 Ga0207687_10000605 3300025927 Bacteria 24228
54 Ga0207687_10137550 3300025927 Bacteria 1849
55 Ga0207700_10000446 3300025928 Bacteria 24275
56 Ga0207700_10011088 3300025928 Bacteria 5731
57 Ga0207640_10065976 3300025981 Bacteria 2417
58 Ga0207678_10000016 3300026067 Bacteria 137207
59 Ga0207702_10009493 3300026078 Bacteria 8173
60 Ga0207683_10023981 3300026121 Bacteria 5250
61 Ga0207428_10043118 3300027907 Bacteria 3646
62 Ga0268266_10138528 3300028379 Bacteria 2182
63 Ga0268264_10049726 3300028381 Bacteria 3489
64 Ga0265334_10002552 3300028573 Bacteria 8494
65 Ga0265318_10006761 3300028577 Bacteria 5247
66 Ga0265322_10002446 3300028654 Bacteria 5732
67 Ga0265336_10023863 3300028666 Bacteria 1936
68 Ga0307515_10226586 3300028794 Bacteria 1673
69 Ga0265338_10024736 3300028800 Bacteria 6123
70 Ga0265324_10005492 3300029957 Bacteria 5470
71 Ga0316180_1189858 3300030736 Bacteria 1825
72 Ga0265332_10023718 3300031238 Bacteria 2705
73 Ga0265320_10002152 3300031240 Bacteria 13830
74 Ga0265325_10045499 3300031241 Bacteria 2280
75 Ga0265329_10001519 3300031242 Bacteria 11105
76 Ga0265340_10000957 3300031247 Bacteria 16441
77 Ga0265339_10011347 3300031249 Bacteria 5490
78 Ga0265331_10030806 3300031250 Bacteria 2668
79 Ga0265316_10004088 3300031344 Bacteria 14604
80 Ga0307513_10000149 3300031456 Bacteria 99930
81 Ga0307408_100046275 3300031548 Bacteria 3111
82 Ga0316579_10000503 3300031691 Bacteria 12785
83 Ga0265314_10003330 3300031711 Bacteria 15642
84 Ga0316576_10047030 3300031727 Bacteria 3125
85 Ga0316578_10035303 3300031728 Bacteria 2874
86 Ga0307518_10007724 3300031838 Bacteria 7690
87 Ga0307409_100005222 3300031995 Bacteria 7440
88 Ga0307409_100026453 3300031995 Bacteria 4092
89 Ga0307415_100041151 3300032126 Bacteria 3066
90 Ga0307507_10028815 3300033179 Bacteria 5905
91 Ga0307510_10070319 3300033180 Bacteria 3496
92 Ga0316588_1003175 3300033528 Bacteria 2962
93 Ga0316584_0026771 3300036712 Bacteria 4240
94 Ga0436364_0223097 3300037853 Bacteria 2728
95 Ga0439436_0003183 3300041404 Bacteria 4978
96 Ga0439436_0015165 3300041404 Bacteria 2319
97 Ga0451791_0010454 3300041451 Bacteria 4459
98 Ga0451793_1290055 3300041452 Bacteria 3150
99 Ga0451841_0979694 3300041498 Bacteria 1910
100 Ga0451843_0677753 3300041509 Bacteria 2435
101 Ga0451853_1484412 3300041512 Bacteria 3576
102 Ga0451853_2112645 3300041512 Bacteria 2758
103 Ga0439433_0001464 3300041999 Bacteria 4883
104 Ga0439433_0003883 3300041999 Bacteria 3216
105 Ga0439449_0000818 3300042007 Bacteria 12004
106 Ga0439449_0001436 3300042007 Bacteria 9308
107 Ga0466972_0001958 3300044658 Bacteria 10098
108 Ga0466972_0002049 3300044658 Bacteria 9875
109 Ga0466972_0007572 3300044658 Bacteria 5452
110 Ga0466972_0010317 3300044658 Bacteria 4690
111 Ga0466965_0017198 3300044683 Bacteria 3453
112 Ga0466968_0002974 3300044735 Bacteria 6263
113 Ga0466968_0003663 3300044735 Bacteria 5697
114 Ga0466957_0042114 3300044842 Bacteria 2762
115 Ga0466960_0008502 3300044901 Bacteria 4205
116 Ga0466960_0022228 3300044901 Bacteria 2833
117 Ga0451576_0046925 3300045051 Bacteria 4545
118 Ga0466967_0234791 3300045976 Bacteria 1747
119 Ga0495603_0001151 3300046455 Bacteria 15423
120 Ga0495629_0000233 3300046459 Bacteria 48921
121 Ga0495641_0053884 3300046461 Bacteria 1829
122 Ga0495640_0045821 3300046533 Bacteria 3033
123 Ga0495640_0071879 3300046533 Bacteria 2320
124 Ga0495613_0000760 3300046689 Bacteria 25237
125 Ga0495613_0106488 3300046689 Bacteria 2023
126 Ga0495674_0070469 3300047319 Bacteria 3021
127 Ga0495676_0000631 3300047321 Bacteria 29213
128 Ga0495614_0000085 3300048089 Bacteria 30894
129 Ga0496100_0054286 3300048903 Bacteria 2613
130 Ga0496102_0000212 3300048905 Bacteria 77755
131 Ga0496103_0000593 3300048906 Bacteria 28545
132 Ga0496104_0023165 3300048907 Bacteria 5709
133 Ga0496104_0159976 3300048907 Bacteria 2160
134 Ga0496105_0096438 3300048908 Bacteria 2442
135 Ga0496105_0185812 3300048908 Bacteria 1701
136 Ga0496108_0000921 3300048911 Bacteria 22945
137 Ga0496108_0003660 3300048911 Bacteria 12330
138 Ga0496108_0049560 3300048911 Bacteria 3513
139 Ga0496109_0004457 3300048912 Bacteria 11697
140 Ga0496109_0005941 3300048912 Bacteria 10245
141 Ga0496109_0021071 3300048912 Bacteria 5764
142 Ga0496110_0007423 3300048913 Bacteria 8755
143 Ga0496110_0035692 3300048913 Bacteria 4315
144 Ga0496112_0005346 3300048915 Bacteria 11087
145 Ga0496113_0001633 3300048916 Bacteria 12640
146 Ga0496114_0030853 3300048917 Bacteria 4410
147 Ga0496114_0037669 3300048917 Bacteria 4000
148 Ga0496114_0043409 3300048917 Bacteria 3728
149 Ga0496114_0051632 3300048917 Bacteria 3424
150 Ga0496114_0167044 3300048917 Bacteria 1916
151 Ga0496115_0010511 3300048918 Bacteria 6920
152 Ga0496118_0015942 3300048921 Bacteria 6924
153 Ga0496121_0013879 3300048924 Bacteria 8617
154 Ga0496121_0046586 3300048924 Bacteria 3710
155 Ga0496124_0060387 3300048927 Bacteria 3180
156 Ga0501031_0022116 3300049568 Bacteria 4143
157 Ga0501031_0115033 3300049568 Bacteria 1757
158 Ga0501032_0001805 3300049569 Bacteria 16902
159 Ga0501032_0024767 3300049569 Bacteria 4140
160 Ga0501034_0003756 3300049571 Bacteria 17153
161 Ga0501036_0062249 3300049572 Bacteria 3161
162 Ga0501036_0085185 3300049572 Bacteria 2671
163 Ga0501036_0088234 3300049572 Bacteria 2621
164 Ga0501037_0000284 3300049573 Bacteria 42983
165 Ga0501038_0000436 3300049574 Bacteria 36343
166 Ga0501038_0042920 3300049574 Bacteria 3936
167 Ga0501038_0087901 3300049574 Bacteria 2609
168 Ga0501039_0000665 3300049575 Bacteria 24733
169 Ga0501039_0026638 3300049575 Bacteria 4442
170 Ga0501039_0102318 3300049575 Bacteria 2236
171 Ga0501040_0035167 3300049576 Bacteria 3396
172 Ga0501041_0019092 3300049577 Bacteria 4088
173 Ga0501041_0025672 3300049577 Bacteria 3541
174 Ga0501041_0043979 3300049577 Bacteria 2715
175 Ga0501042_0042006 3300049578 Bacteria 3253
176 Ga0501048_0018990 3300049582 Bacteria 5051
177 Ga0501048_0083163 3300049582 Bacteria 2257
178 Ga0501070_0000762 3300049586 Bacteria 29400
179 Ga0501072_0020066 3300049588 Bacteria 5174
180 Ga0501072_0105150 3300049588 Bacteria 2245
181 Ga0501074_0033348 3300049590 Bacteria 3731
182 Ga0501075_0022660 3300049591 Bacteria 4589
183 Ga0501075_0048282 3300049591 Bacteria 3199
184 Ga0501076_0043737 3300049592 Bacteria 3530
185 Ga0501076_0065972 3300049592 Bacteria 2888
186 Ga0501079_0023717 3300049741 Bacteria 4708
187 Ga0501079_0033851 3300049741 Bacteria 3931
188 Ga0501079_0044250 3300049741 Bacteria 3436
189 Ga0501080_0241347 3300049742 Bacteria 1649
190 Ga0501081_0006541 3300049743 Bacteria 7572
191 Ga0501083_0060867 3300049744 Bacteria 2522
192 Ga0501035_0062703 3300049822 Bacteria 3308
193 Ga0501044_0152337 3300049823 Bacteria 2294
194 nmdc:mga00v17_1854_c1 3300050491 Bacteria 10921
195 nmdc:mga05p37_17168_c1 3300050507 Bacteria 8732
196 nmdc:mga05p37_5491_c1 3300050507 Bacteria 14893
197 nmdc:mga05p37_6687_c2 3300050507 Bacteria 11868
198 nmdc:mga09592_3_c1 3300050508 Bacteria 144376
199 nmdc:mga09592_4830_c1 3300050508 Bacteria 10917
200 nmdc:mga0qj67_122949_c1 3300050509 Bacteria 2100
201 nmdc:mga0qj67_17_c1 3300050509 Bacteria 121673
202 nmdc:mga0qj67_39874_c1 3300050509 Bacteria 3690
203 nmdc:mga06r32_11162_c1 3300050510 Bacteria 8091
204 nmdc:mga06r32_159266_c1 3300050510 Bacteria 2240
205 nmdc:mga06r32_385_c1 3300050510 Bacteria 37158
206 Ga0501084_0010809 3300054114 Bacteria 7558
207 Ga0501084_0036583 3300054114 Bacteria 4100
208 Ga0587077_005150 3300059493 Viruses 1769
209 Ga0501082_0014355 3300060353 Bacteria 6815
210 Ga0530510_0007242 3300061734 Bacteria 7718
211 Ga0530510_0089870 3300061734 Bacteria 2240

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300045976 Ga0466967_0234791 Ga0466967_0234791_352_1734 428
2 3300048908 Ga0496105_0185812 Ga0496105_0185812_16_1365 432
3 3300042007 Ga0439449_0001436 Ga0439449_0001436_4941_6629 441
4 3300009101 Ga0105247_10004292 Ga0105247_100042922 448
5 3300005617 Ga0068859_100004182 Ga0068859_1000041829 450
6 3300006931 Ga0097620_100004182 Ga0097620_1000041829 450
7 3300048905 Ga0496102_0000212 Ga0496102_0000212_19987_21531 450
8 3300048906 Ga0496103_0000593 Ga0496103_0000593_9906_11450 450
9 3300048921 Ga0496118_0015942 Ga0496118_0015942_4724_6268 450
10 3300048924 Ga0496121_0046586 Ga0496121_0046586_1878_3422 450
11 3300049591 Ga0501075_0048282 Ga0501075_0048282_1715_3166 450
12 3300005455 Ga0070663_100000209 Ga0070663_10000020922 458
13 3300026067 Ga0207678_10000016 Ga0207678_10000016102 458
14 3300049823 Ga0501044_0152337 Ga0501044_0152337_147_1727 466
15 3300041452 Ga0451793_1290055 Ga0451793_1290055_1196_2749 472
16 3300041509 Ga0451843_0677753 Ga0451843_0677753_762_2315 472
17 3300041512 Ga0451853_1484412 Ga0451853_1484412_1896_3470 474
18 3300005937 Ga0081455_10000948 Ga0081455_1000094824 475
19 3300048917 Ga0496114_0030853 Ga0496114_0030853_2652_4193 477
20 3300049592 Ga0501076_0065972 Ga0501076_0065972_378_1910 477
21 3300049741 Ga0501079_0023717 Ga0501079_0023717_114_1646 477
22 3300028794 Ga0307515_10226586 Ga0307515_102265861 478
23 3300048911 Ga0496108_0049560 Ga0496108_0049560_187_1743 479
24 3300048912 Ga0496109_0021071 Ga0496109_0021071_1218_2774 479
25 3300048913 Ga0496110_0035692 Ga0496110_0035692_1386_2942 479
26 3300048917 Ga0496114_0167044 Ga0496114_0167044_282_1838 479
27 3300003323 rootH1_10164545 rootH1_101645458 480
28 3300033528 Ga0316588_1003175 Ga0316588_10031751 480
29 3300044658 Ga0466972_0001958 Ga0466972_0001958_3652_5247 480
30 3300044683 Ga0466965_0017198 Ga0466965_0017198_868_2463 480
31 3300044735 Ga0466968_0003663 Ga0466968_0003663_234_1829 480
32 3300044901 Ga0466960_0022228 Ga0466960_0022228_1045_2640 480
33 3300059493 Ga0587077_005150 Ga0587077_005150_94_1683 480
34 3300005548 Ga0070665_100027911 Ga0070665_1000279114 482
35 3300028379 Ga0268266_10138528 Ga0268266_101385283 482
36 3300005843 Ga0068860_100065611 Ga0068860_1000656112 484
37 3300028381 Ga0268264_10049726 Ga0268264_100497265 484
38 iso_pu_bacteria 2870721527 2870726078 484
39 3300032126 Ga0307415_100041151 Ga0307415_1000411511 485
40 3300030736 Ga0316180_1189858 Ga0316180_11898581 486
41 3300044658 Ga0466972_0010317 Ga0466972_0010317_2903_4417 486
42 3300005467 Ga0070706_100000185 Ga0070706_10000018535 487
43 3300005468 Ga0070707_100000046 Ga0070707_10000004639 487
44 3300005518 Ga0070699_100000161 Ga0070699_10000016118 487
45 3300025910 Ga0207684_10000070 Ga0207684_1000007087 487
46 3300025922 Ga0207646_10000007 Ga0207646_10000007402 487
47 3300028577 Ga0265318_10006761 Ga0265318_100067613 487
48 3300028654 Ga0265322_10002446 Ga0265322_100024465 487
49 3300028666 Ga0265336_10023863 Ga0265336_100238631 487
50 3300028800 Ga0265338_10024736 Ga0265338_100247363 487
51 3300029957 Ga0265324_10005492 Ga0265324_100054923 487
52 3300031238 Ga0265332_10023718 Ga0265332_100237182 487
53 3300031240 Ga0265320_10002152 Ga0265320_1000215211 487
54 3300031241 Ga0265325_10045499 Ga0265325_100454992 487
55 3300031242 Ga0265329_10001519 Ga0265329_100015196 487
56 3300031247 Ga0265340_10000957 Ga0265340_100009577 487
57 3300031249 Ga0265339_10011347 Ga0265339_100113477 487
58 3300031250 Ga0265331_10030806 Ga0265331_100308062 487
59 3300031344 Ga0265316_10004088 Ga0265316_100040886 487
60 3300031456 Ga0307513_10000149 Ga0307513_1000014994 487
61 3300031711 Ga0265314_10003330 Ga0265314_100033306 487
62 3300041512 Ga0451853_2112645 Ga0451853_2112645_557_2110 487
63 iso_pu_bacteria 8047710418 8047712876 487
64 3300006844 Ga0075428_100000228 Ga0075428_10000022842 488
65 3300009147 Ga0114129_10000696 Ga0114129_1000069635 488
66 3300041498 Ga0451841_0979694 Ga0451841_0979694_218_1786 488
67 3300050507 nmdc:mga05p37_6687_c2 nmdc:mga05p37_6687_c2_2225_3733 488
68 iso_pu_bacteria 2523231044 2523382837 488
69 iso_pu_bacteria 2585427649 2586061921 488
70 iso_pu_bacteria 2751185734 2753074891 488
71 iso_pu_bacteria 8003314358 8003323641 488
72 iso_pu_bacteria 8057568493 8057573640 488
73 3300041404 Ga0439436_0003183 Ga0439436_0003183_3349_4863 489
74 3300041999 Ga0439433_0003883 Ga0439433_0003883_1404_2918 489
75 3300042007 Ga0439449_0000818 Ga0439449_0000818_1931_3445 489
76 3300045051 Ga0451576_0046925 Ga0451576_0046925_2677_4233 489
77 3300048927 Ga0496124_0060387 Ga0496124_0060387_1381_2937 489
78 iso_pu_bacteria 2832004796 2832010273 489
79 iso_pu_bacteria 2842134933 2842136655 489
80 iso_pu_bacteria 2861520306 2861523517 489
81 iso_pu_bacteria 2866065130 2866069152 489
82 3300006028 Ga0070717_10003415 Ga0070717_100034152 490
83 3300006846 Ga0075430_100000610 Ga0075430_10000061022 490
84 3300006847 Ga0075431_100004541 Ga0075431_1000045419 490
85 3300006880 Ga0075429_100000625 Ga0075429_1000006256 490
86 3300009147 Ga0114129_10134979 Ga0114129_101349792 490
87 3300020080 Ga0206350_10528316 Ga0206350_105283161 490
88 3300025928 Ga0207700_10011088 Ga0207700_100110883 490
89 3300050507 nmdc:mga05p37_5491_c1 nmdc:mga05p37_5491_c1_455_1987 490
90 3300050508 nmdc:mga09592_3_c1 nmdc:mga09592_3_c1_56803_58335 490
91 3300050509 nmdc:mga0qj67_17_c1 nmdc:mga0qj67_17_c1_35263_36795 490
92 3300050510 nmdc:mga06r32_385_c1 nmdc:mga06r32_385_c1_18083_19615 490
93 iso_pu_bacteria 2858902515 2858908028 490
94 3300009098 Ga0105245_10001345 Ga0105245_100013458 491
95 3300025927 Ga0207687_10000605 Ga0207687_1000060518 491
96 3300048907 Ga0496104_0159976 Ga0496104_0159976_314_1855 491
97 3300048917 Ga0496114_0037669 Ga0496114_0037669_516_2057 491
98 iso_pu_bacteria 8003856774 8003857044 491
99 3300009098 Ga0105245_10075856 Ga0105245_100758563 492
100 3300025927 Ga0207687_10137550 Ga0207687_101375501 492
101 3300031838 Ga0307518_10007724 Ga0307518_100077246 492
102 3300033179 Ga0307507_10028815 Ga0307507_100288152 492
103 3300033180 Ga0307510_10070319 Ga0307510_100703193 492
104 3300044658 Ga0466972_0002049 Ga0466972_0002049_3855_5399 492
105 3300027907 Ga0207428_10043118 Ga0207428_100431182 493
106 3300044842 Ga0466957_0042114 Ga0466957_0042114_716_2281 493
107 3300044901 Ga0466960_0008502 Ga0466960_0008502_2488_4029 493
108 3300046455 Ga0495603_0001151 Ga0495603_0001151_13346_14902 493
109 3300046459 Ga0495629_0000233 Ga0495629_0000233_32889_34445 493
110 3300046689 Ga0495613_0000760 Ga0495613_0000760_13877_15433 493
111 3300047321 Ga0495676_0000631 Ga0495676_0000631_24012_25568 493
112 3300048089 Ga0495614_0000085 Ga0495614_0000085_22257_23813 493
113 3300049569 Ga0501032_0001805 Ga0501032_0001805_6290_7831 493
114 3300049571 Ga0501034_0003756 Ga0501034_0003756_5171_6712 493
115 3300049573 Ga0501037_0000284 Ga0501037_0000284_27816_29357 493
116 3300049574 Ga0501038_0000436 Ga0501038_0000436_28272_29813 493
117 3300049575 Ga0501039_0000665 Ga0501039_0000665_9200_10741 493
118 3300049586 Ga0501070_0000762 Ga0501070_0000762_17094_18635 493
119 iso_pu_bacteria 8025530807 8025531586 493
120 3300003792 Ga0055540_1000040 Ga0055540_100004035 494
121 3300005535 Ga0070684_100192935 Ga0070684_1001929352 494
122 3300006051 Ga0075364_10003769 Ga0075364_100037696 494
123 3300009545 Ga0105237_10008877 Ga0105237_100088779 494
124 3300010375 Ga0105239_10001323 Ga0105239_100013233 494
125 3300025303 Ga0209051_1000107 Ga0209051_100010735 494
126 3300025914 Ga0207671_10004373 Ga0207671_1000437312 494
127 3300044658 Ga0466972_0007572 Ga0466972_0007572_3393_4928 494
128 3300050491 nmdc:mga00v17_1854_c1 nmdc:mga00v17_1854_c1_1687_3231 494
129 iso_pu_bacteria 2912757875 2912763331 494
130 3300031995 Ga0307409_100005222 Ga0307409_1000052227 495
131 3300048918 Ga0496115_0010511 Ga0496115_0010511_1636_3189 495
132 iso_pu_bacteria 2643221576 2643893114 495
133 iso_pu_bacteria 2643221590 2643961827 495
134 iso_pu_bacteria 2808606372 2808899410 495
135 3300006846 Ga0075430_100007199 Ga0075430_10000719912 496
136 3300006847 Ga0075431_100000012 Ga0075431_10000001275 496
137 3300006880 Ga0075429_100004584 Ga0075429_10000458412 496
138 3300046533 Ga0495640_0071879 Ga0495640_0071879_410_1936 496
139 3300050508 nmdc:mga09592_4830_c1 nmdc:mga09592_4830_c1_8101_9651 496
140 3300050509 nmdc:mga0qj67_39874_c1 nmdc:mga0qj67_39874_c1_1560_3110 496
141 3300050510 nmdc:mga06r32_11162_c1 nmdc:mga06r32_11162_c1_653_2203 496
142 iso_pu_bacteria 2808606360 2808852175 496
143 iso_pu_bacteria 2808606982 2811847826 496
144 iso_pu_bacteria 2919443155 2919444220 496
145 iso_pu_bacteria 3006321560 3006324643 496
146 3300005563 Ga0068855_100156958 Ga0068855_1001569582 497
147 3300020069 Ga0197907_10388012 Ga0197907_103880123 497
148 3300020070 Ga0206356_10034981 Ga0206356_100349811 497
149 3300046533 Ga0495640_0045821 Ga0495640_0045821_1102_2628 497
150 3300046689 Ga0495613_0106488 Ga0495613_0106488_167_1693 497
151 3300037853 Ga0436364_0223097 Ga0436364_0223097_892_2436 498
152 iso_pu_bacteria 2622736605 2623498677 498
153 iso_pu_bacteria 2721755702 2723640437 498
154 iso_pu_bacteria 2935409751 2935409975 498
155 3300005981 Ga0081538_10000536 Ga0081538_1000053633 499
156 3300031727 Ga0316576_10047030 Ga0316576_100470305 499
157 3300031728 Ga0316578_10035303 Ga0316578_100353033 499
158 3300036712 Ga0316584_0026771 Ga0316584_0026771_1280_2815 499
159 3300049568 Ga0501031_0115033 Ga0501031_0115033_11_1558 499
160 3300049572 Ga0501036_0088234 Ga0501036_0088234_723_2270 499
161 3300049574 Ga0501038_0042920 Ga0501038_0042920_1678_3210 499
162 3300049576 Ga0501040_0035167 Ga0501040_0035167_459_1991 499
163 3300049577 Ga0501041_0043979 Ga0501041_0043979_614_2161 499
164 3300049578 Ga0501042_0042006 Ga0501042_0042006_105_1652 499
165 3300049582 Ga0501048_0083163 Ga0501048_0083163_453_1985 499
166 3300049588 Ga0501072_0105150 Ga0501072_0105150_619_2166 499
167 3300054114 Ga0501084_0010809 Ga0501084_0010809_1454_2986 499
168 3300061734 Ga0530510_0089870 Ga0530510_0089870_444_1976 499
169 iso_pu_bacteria 2884994152 2884997653 499
170 3300026121 Ga0207683_10023981 Ga0207683_100239816 500
171 3300031548 Ga0307408_100046275 Ga0307408_1000462753 500
172 3300041404 Ga0439436_0015165 Ga0439436_0015165_625_2184 500
173 3300041451 Ga0451791_0010454 Ga0451791_0010454_442_1989 500
174 3300041999 Ga0439433_0001464 Ga0439433_0001464_1995_3554 500
175 3300048917 Ga0496114_0043409 Ga0496114_0043409_1681_3231 500
176 3300048917 Ga0496114_0051632 Ga0496114_0051632_164_1714 500
177 3300048924 Ga0496121_0013879 Ga0496121_0013879_5479_7029 500
178 3300049568 Ga0501031_0022116 Ga0501031_0022116_1666_3222 500
179 3300049569 Ga0501032_0024767 Ga0501032_0024767_1543_3099 500
180 3300049572 Ga0501036_0062249 Ga0501036_0062249_432_1988 500
181 3300049572 Ga0501036_0085185 Ga0501036_0085185_723_2258 500
182 3300049574 Ga0501038_0087901 Ga0501038_0087901_540_2096 500
183 3300049575 Ga0501039_0026638 Ga0501039_0026638_353_1909 500
184 3300049575 Ga0501039_0102318 Ga0501039_0102318_480_2015 500
185 3300049577 Ga0501041_0019092 Ga0501041_0019092_1176_2732 500
186 3300049577 Ga0501041_0025672 Ga0501041_0025672_447_1982 500
187 3300049582 Ga0501048_0018990 Ga0501048_0018990_1725_3281 500
188 3300049588 Ga0501072_0020066 Ga0501072_0020066_2017_3573 500
189 3300049590 Ga0501074_0033348 Ga0501074_0033348_223_1758 500
190 3300049591 Ga0501075_0022660 Ga0501075_0022660_2084_3640 500
191 3300049592 Ga0501076_0043737 Ga0501076_0043737_1648_3204 500
192 3300049741 Ga0501079_0033851 Ga0501079_0033851_643_2199 500
193 3300049741 Ga0501079_0044250 Ga0501079_0044250_1600_3135 500
194 3300049742 Ga0501080_0241347 Ga0501080_0241347_21_1577 500
195 3300049743 Ga0501081_0006541 Ga0501081_0006541_4489_6024 500
196 3300049744 Ga0501083_0060867 Ga0501083_0060867_644_2200 500
197 3300049822 Ga0501035_0062703 Ga0501035_0062703_926_2482 500
198 3300054114 Ga0501084_0036583 Ga0501084_0036583_1611_3167 500
199 3300060353 Ga0501082_0014355 Ga0501082_0014355_1493_3028 500
200 3300061734 Ga0530510_0007242 Ga0530510_0007242_1571_3127 500
201 3300006846 Ga0075430_100090647 Ga0075430_1000906473 501
202 3300006847 Ga0075431_100034014 Ga0075431_1000340143 501
203 3300006880 Ga0075429_100010342 Ga0075429_1000103421 501
204 3300009147 Ga0114129_10083062 Ga0114129_100830625 501
205 3300046461 Ga0495641_0053884 Ga0495641_0053884_237_1790 501
206 3300047319 Ga0495674_0070469 Ga0495674_0070469_1145_2698 501
207 3300048903 Ga0496100_0054286 Ga0496100_0054286_548_2101 501
208 3300048907 Ga0496104_0023165 Ga0496104_0023165_3517_5070 501
209 3300048908 Ga0496105_0096438 Ga0496105_0096438_355_1908 501
210 3300048911 Ga0496108_0003660 Ga0496108_0003660_6572_8125 501
211 3300048912 Ga0496109_0005941 Ga0496109_0005941_1434_2987 501
212 3300048913 Ga0496110_0007423 Ga0496110_0007423_4181_5734 501
213 3300050507 nmdc:mga05p37_17168_c1 nmdc:mga05p37_17168_c1_2696_4240 501
214 3300050509 nmdc:mga0qj67_122949_c1 nmdc:mga0qj67_122949_c1_487_2031 501
215 3300050510 nmdc:mga06r32_159266_c1 nmdc:mga06r32_159266_c1_331_1875 501
216 3300031995 Ga0307409_100026453 Ga0307409_1000264534 502
217 3300044735 Ga0466968_0002974 Ga0466968_0002974_4419_5981 502
218 3300005337 Ga0070682_100080394 Ga0070682_1000803942 503
219 3300005436 Ga0070713_100000475 Ga0070713_1000004759 503
220 3300005564 Ga0070664_100172760 Ga0070664_1001727602 503
221 3300005985 Ga0081539_10000085 Ga0081539_100000852 503
222 3300006028 Ga0070717_10000745 Ga0070717_100007457 503
223 3300013105 Ga0157369_10013067 Ga0157369_100130676 503
224 3300013307 Ga0157372_10064996 Ga0157372_100649963 503
225 3300025916 Ga0207663_10142946 Ga0207663_101429461 503
226 3300025918 Ga0207662_10093121 Ga0207662_100931212 503
227 3300025928 Ga0207700_10000446 Ga0207700_1000044610 503
228 3300025981 Ga0207640_10065976 Ga0207640_100659762 503
229 3300026078 Ga0207702_10009493 Ga0207702_100094934 503
230 3300028573 Ga0265334_10002552 Ga0265334_100025523 503
231 3300031691 Ga0316579_10000503 Ga0316579_1000050310 503
232 3300048911 Ga0496108_0000921 Ga0496108_0000921_7883_9445 503
233 3300048912 Ga0496109_0004457 Ga0496109_0004457_5442_7004 503
234 3300048915 Ga0496112_0005346 Ga0496112_0005346_3211_4773 503
235 3300048916 Ga0496113_0001633 Ga0496113_0001633_8396_9958 503
236 3300005985 Ga0081539_10003971 Ga0081539_100039712 504
237 3300003203 JGI25406J46586_10003541 JGI25406J46586_100035413 549

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17482

Phage_sheath_1C

Phage tail sheath C-terminal domain

387

495

0.95

PF04984

Phage_sheath_1

Phage tail sheath protein subtilisin-like domain

202

386

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
8bky-assembly1.cif.gz_A cryo-em structure of a contractile injection system in streptomyces coelicolor, the contracted sheath shell. 0.7982 2 496
8bky-assembly1.cif.gz_A cryo-em structure of a contractile injection system in streptomyces coelicolor, the contracted sheath shell. 0.7962 2 496
8bl4-assembly1.cif.gz_D cryo-em structure of a contractile injection system in streptomyces coelicolor, the sheath-tube module in extended state. 0.7821 1 469
8bl4-assembly1.cif.gz_D cryo-em structure of a contractile injection system in streptomyces coelicolor, the sheath-tube module in extended state. 0.7534 1 469
6rc8-assembly1.cif.gz_B cryo-em structure of the anti-feeding prophage (afp) helical sheath in contracted state 0.7432 7 488
ID Description Score Start End Superfamily
3foaC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7396 26 355 3.40.50.11780
3foaC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7335 26 355 3.40.50.11780
3lmlA03 Mainly Beta;Sandwich;Immunoglobulin-like; 0.731 107 203 2.60.40.4290
3lmlA03 Mainly Beta;Sandwich;Immunoglobulin-like; 0.7091 107 203 2.60.40.4290
3lmlA02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1; 0.6504 17 98 3.30.1490.450
ID Description Score Start End GO Terms
AF-A0A6B3HYM1-F1-model_v4 Phage tail sheath family protein 0.9825 208 328
AF-A0A6B3GW63-F1-model_v4 Phage tail sheath family protein 0.9789 203 358
AF-A0A6B3HYM1-F1-model_v4 Phage tail sheath family protein 0.9667 208 328
AF-A0A1G1H004-F1-model_v4 Uncharacterized protein 0.9216 402 491
AF-A0A538CM30-F1-model_v4 Phage tail sheath family protein 0.9192 401 494

Feature Viewer

pLDDT pTM Quality
71 0.63 Medium
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Predicted Structure (AlphaFold2)

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