F345514
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 232 | 142 | 464 | 472 |
Family's Representative Sequence
| Representative Sequence | 3300049586|Ga0501070_0067303|Ga0501070_0067303_867_2342 |
| Length | 491 |
| Sequence | MMKRFLRSEASMSTTRRIRIQPDGDTTIATGLAAIRSEMKLLTAFPQDVEATAELAAANPRLPDLDRSDIPFVTIDPAGSMDLDQAMYVERADGGYRVYYAIADVAAFVAPGDAVDIEAHKRGETLYGADSRIPLHPKVLSEGAASLLQDQLRPALLWSIDLDETGEGIKVDVRRARVKSRARLDYGSVQAAIDKGGADPMWTVLREIGELRMKREAARGGISLPLPEQEVAVDADGKWTLAFRARHPLEDWNEQISLLTGMAAAHLMVEHKVGILRTLPEPEAWAIQRLHRTARALGIAWPDGLDYPAFIRSLDPTQPVHIAMMVASTTVLRGAGYVTFNGSVPANAEQSALASTYAHATAPLRRLVDRYSGEICVALCAGAPVPQWVLDGLPQLPEIMQQSGLRASRYEHAVLDLAEAAALASRIGETFPGSIVELDHEDPKQGTVIIRDPAIEARIGANAPLPLGADVTARLVEADPAKRVTRFELAS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 2 | 3300001904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 | Metagenome | Rhizosphere |
| 3 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 4 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 5 | 3300002772 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS | Metagenome | Endosphere |
| 6 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 7 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 8 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 9 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 10 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Metagenome | Rhizosphere |
| 12 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 14 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 17 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 18 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 20 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 21 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 22 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 23 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 26 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 27 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 28 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 29 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 30 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 31 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 32 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 43 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 44 | 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 45 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 46 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 47 | 3300020610 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 48 | 3300025231 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 49 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 50 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 51 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 52 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300027682 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 82 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 83 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 84 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 85 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 86 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 87 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 88 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 89 | 3300042156 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 | Metagenome | Rhizosphere |
| 90 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 91 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 92 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 93 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 94 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 95 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 96 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 97 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 98 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 99 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 100 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 101 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 102 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 103 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 104 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 105 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 106 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 107 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 108 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 109 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 110 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 111 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 112 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 115 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 116 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 118 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 119 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 120 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 121 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 123 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 124 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 125 | 3300055283 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere | Metagenome | Endosphere |
| 126 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 127 | 2537561836 | Rhodanobacter spathiphylli B39 | Isolate | Unclassified |
| 128 | 2643221562 | Rhodanobacter sp. Root561 | Isolate | Unclassified |
| 129 | 2643221577 | Rhodanobacter sp. Root627 | Isolate | Unclassified |
| 130 | 2643221604 | Nocardioides sp. Root190 | Isolate | Unclassified |
| 131 | 2643221617 | Nocardioides sp. Root79 | Isolate | Unclassified |
| 132 | 2643221620 | Nocardioides sp. Root240 | Isolate | Unclassified |
| 133 | 2643221685 | Rhodanobacter sp. Root480 | Isolate | Unclassified |
| 134 | 2643221696 | Nocardioides sp. Root140 | Isolate | Unclassified |
| 135 | 2852646457 | Microbacterium sp. AK031 | Isolate | Rhizosphere |
| 136 | 2855386786 | Nocardioides ferulae EGI 63112 | Isolate | Unclassified |
| 137 | 2895395659 | Rhodanobacter sp. T12-5 | Isolate | Unclassified |
| 138 | 2919395869 | Microbacterium resistens 2980 | Isolate | Unclassified |
| 139 | 2939611941 | Rhodanobacter soli 1757 | Isolate | Rhizosphere |
| 140 | 2945968032 | Microbacterium murale W2I7 | Isolate | Rhizosphere |
| 141 | 2946033335 | Microbacterium sp. W4I4 | Isolate | Rhizosphere |
| 142 | 2946041624 | Microbacterium natoriense W4I9-1 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.95 |
| Metatranscriptomes | 2.16 |
| Isolates | 6.9 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 6.03 |
| Nodule | 0 |
| Rhizoplane | 4.74 |
| Rhizosphere | 84.05 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0501070_0067303 | 3300049586 | Bacteria | 2966 |
| 2 | JGI24736J21556_1003189 | 3300001904 | Bacteria | 2858 |
| 3 | JGI24740J21852_10003272 | 3300001979 | Bacteria | 7144 |
| 4 | JGI25162J39368_1000547 | 3300002737 | Bacteria | 27800 |
| 5 | JGI25162J39368_1001617 | 3300002737 | Bacteria | 11289 |
| 6 | JGI25164J39214_1000525 | 3300002772 | Bacteria | 18067 |
| 7 | JGI25164J39214_1001157 | 3300002772 | Bacteria | 7353 |
| 8 | JGI25165J46597_1000662 | 3300003214 | Bacteria | 27802 |
| 9 | JGI25165J46597_1003046 | 3300003214 | Bacteria | 4570 |
| 10 | Ga0070683_100001385 | 3300005329 | Bacteria | 18616 |
| 11 | Ga0070683_100018769 | 3300005329 | Bacteria | 6131 |
| 12 | Ga0070683_100048676 | 3300005329 | Bacteria | 3919 |
| 13 | Ga0070683_100072659 | 3300005329 | Bacteria | 3211 |
| 14 | Ga0070680_100026294 | 3300005336 | Bacteria | 4654 |
| 15 | Ga0070682_100000848 | 3300005337 | Bacteria | 17883 |
| 16 | Ga0070682_100030978 | 3300005337 | Bacteria | 3232 |
| 17 | Ga0070660_100030014 | 3300005339 | Bacteria | 4077 |
| 18 | Ga0070660_100050342 | 3300005339 | Bacteria | 3205 |
| 19 | Ga0070691_10009642 | 3300005341 | Bacteria | 4406 |
| 20 | Ga0070661_100024753 | 3300005344 | Bacteria | 4307 |
| 21 | Ga0070661_100031378 | 3300005344 | Bacteria | 3843 |
| 22 | Ga0070661_100032277 | 3300005344 | Bacteria | 3790 |
| 23 | Ga0070692_10001833 | 3300005345 | Bacteria | 7968 |
| 24 | Ga0070692_10006840 | 3300005345 | Bacteria | 4980 |
| 25 | Ga0070659_100006062 | 3300005366 | Bacteria | 8721 |
| 26 | Ga0070659_100029214 | 3300005366 | Bacteria | 4260 |
| 27 | Ga0070714_100000244 | 3300005435 | Bacteria | 42515 |
| 28 | Ga0070714_100002987 | 3300005435 | Bacteria | 12531 |
| 29 | Ga0070714_100025038 | 3300005435 | Bacteria | 4921 |
| 30 | Ga0070713_100001046 | 3300005436 | Bacteria | 17685 |
| 31 | Ga0070694_100063860 | 3300005444 | Bacteria | 2519 |
| 32 | Ga0070663_100020255 | 3300005455 | Bacteria | 4401 |
| 33 | Ga0070663_100160442 | 3300005455 | Bacteria | 1730 |
| 34 | Ga0070681_10013465 | 3300005458 | Bacteria | 8127 |
| 35 | Ga0070681_10014233 | 3300005458 | Bacteria | 7917 |
| 36 | Ga0070681_10084871 | 3300005458 | Bacteria | 3119 |
| 37 | Ga0070679_100137910 | 3300005530 | Bacteria | 2420 |
| 38 | Ga0070684_100000270 | 3300005535 | Bacteria | 35927 |
| 39 | Ga0070684_100075680 | 3300005535 | Bacteria | 2970 |
| 40 | Ga0068853_100013278 | 3300005539 | Bacteria | 6725 |
| 41 | Ga0068853_100018931 | 3300005539 | Bacteria | 5702 |
| 42 | Ga0068853_100051515 | 3300005539 | Bacteria | 3543 |
| 43 | Ga0070696_100001129 | 3300005546 | Bacteria | 17274 |
| 44 | Ga0070696_100050409 | 3300005546 | Bacteria | 2894 |
| 45 | Ga0070696_100098803 | 3300005546 | Bacteria | 2088 |
| 46 | Ga0070693_100040181 | 3300005547 | Bacteria | 2625 |
| 47 | Ga0068855_100166512 | 3300005563 | Bacteria | 2498 |
| 48 | Ga0070664_100038197 | 3300005564 | Bacteria | 4041 |
| 49 | Ga0068857_100012948 | 3300005577 | Bacteria | 7268 |
| 50 | Ga0068857_100013298 | 3300005577 | Bacteria | 7169 |
| 51 | Ga0068854_100002545 | 3300005578 | Bacteria | 11291 |
| 52 | Ga0068854_100007196 | 3300005578 | Bacteria | 7107 |
| 53 | Ga0068854_100100440 | 3300005578 | Bacteria | 2168 |
| 54 | Ga0068856_100018618 | 3300005614 | Bacteria | 6730 |
| 55 | Ga0068852_100043620 | 3300005616 | Bacteria | 3805 |
| 56 | Ga0068852_100059009 | 3300005616 | Bacteria | 3326 |
| 57 | Ga0070712_100089472 | 3300006175 | Bacteria | 2252 |
| 58 | Ga0105245_10181924 | 3300009098 | Bacteria | 2009 |
| 59 | Ga0105245_10296618 | 3300009098 | Bacteria | 1585 |
| 60 | Ga0114129_10001855 | 3300009147 | Bacteria | 28806 |
| 61 | Ga0105237_10297259 | 3300009545 | Bacteria | 1617 |
| 62 | Ga0105238_10012787 | 3300009551 | Bacteria | 8470 |
| 63 | Ga0105238_10026129 | 3300009551 | Bacteria | 5949 |
| 64 | Ga0105246_10062292 | 3300011119 | Bacteria | 2598 |
| 65 | Ga0157373_10017539 | 3300013100 | Bacteria | 5214 |
| 66 | Ga0157373_10045589 | 3300013100 | Bacteria | 3129 |
| 67 | Ga0157373_10082113 | 3300013100 | Bacteria | 2272 |
| 68 | Ga0157371_10006947 | 3300013102 | Bacteria | 9224 |
| 69 | Ga0157371_10024807 | 3300013102 | Bacteria | 4376 |
| 70 | Ga0157371_10028126 | 3300013102 | Bacteria | 4073 |
| 71 | Ga0157371_10122922 | 3300013102 | Bacteria | 1846 |
| 72 | Ga0157370_10009918 | 3300013104 | Bacteria | 10089 |
| 73 | Ga0157370_10013253 | 3300013104 | Bacteria | 8496 |
| 74 | Ga0157370_10025955 | 3300013104 | Bacteria | 5792 |
| 75 | Ga0157370_10108605 | 3300013104 | Bacteria | 2594 |
| 76 | Ga0157370_10165567 | 3300013104 | Bacteria | 2056 |
| 77 | Ga0157369_10003457 | 3300013105 | Bacteria | 18730 |
| 78 | Ga0157372_10013088 | 3300013307 | Bacteria | 8852 |
| 79 | Ga0157372_10018322 | 3300013307 | Bacteria | 7525 |
| 80 | Ga0157372_10019134 | 3300013307 | Bacteria | 7372 |
| 81 | Ga0157372_10154514 | 3300013307 | Bacteria | 2650 |
| 82 | Ga0182008_10006809 | 3300014497 | Bacteria | 6358 |
| 83 | Ga0182008_10011242 | 3300014497 | Bacteria | 4769 |
| 84 | Ga0182007_10007620 | 3300015262 | Bacteria | 4516 |
| 85 | Ga0182007_10011687 | 3300015262 | Bacteria | 3410 |
| 86 | Ga0206356_10490854 | 3300020070 | Bacteria | 7785 |
| 87 | Ga0206354_10884761 | 3300020081 | Bacteria | 8816 |
| 88 | Ga0206353_10931654 | 3300020082 | Bacteria | 1506 |
| 89 | Ga0206353_11386851 | 3300020082 | Bacteria | 2688 |
| 90 | Ga0154015_1321256 | 3300020610 | Bacteria | 3282 |
| 91 | Ga0207427_100147 | 3300025231 | Bacteria | 80584 |
| 92 | Ga0207427_100205 | 3300025231 | Bacteria | 53817 |
| 93 | Ga0209437_100005 | 3300025233 | Bacteria | 1071596 |
| 94 | Ga0209437_100349 | 3300025233 | Bacteria | 53817 |
| 95 | Ga0209026_1000090 | 3300025250 | Bacteria | 172829 |
| 96 | Ga0209233_1000011 | 3300025261 | Bacteria | 1071611 |
| 97 | Ga0209233_1000315 | 3300025261 | Bacteria | 53817 |
| 98 | Ga0207647_10004221 | 3300025904 | Bacteria | 10652 |
| 99 | Ga0207705_10002294 | 3300025909 | Bacteria | 14804 |
| 100 | Ga0207705_10008105 | 3300025909 | Bacteria | 7696 |
| 101 | Ga0207654_10093623 | 3300025911 | Bacteria | 1837 |
| 102 | Ga0207707_10004513 | 3300025912 | Bacteria | 12237 |
| 103 | Ga0207707_10009280 | 3300025912 | Bacteria | 8531 |
| 104 | Ga0207707_10016289 | 3300025912 | Bacteria | 6485 |
| 105 | Ga0207695_10004009 | 3300025913 | Bacteria | 20281 |
| 106 | Ga0207695_10089177 | 3300025913 | Bacteria | 3102 |
| 107 | Ga0207671_10122800 | 3300025914 | Bacteria | 1986 |
| 108 | Ga0207660_10008532 | 3300025917 | Bacteria | 6628 |
| 109 | Ga0207657_10013934 | 3300025919 | Bacteria | 7866 |
| 110 | Ga0207657_10046215 | 3300025919 | Bacteria | 3815 |
| 111 | Ga0207657_10142312 | 3300025919 | Bacteria | 1959 |
| 112 | Ga0207649_10002874 | 3300025920 | Bacteria | 9475 |
| 113 | Ga0207649_10018434 | 3300025920 | Bacteria | 3970 |
| 114 | Ga0207652_10017063 | 3300025921 | Bacteria | 5939 |
| 115 | Ga0207694_10011661 | 3300025924 | Bacteria | 6630 |
| 116 | Ga0207700_10008862 | 3300025928 | Bacteria | 6255 |
| 117 | Ga0207664_10000132 | 3300025929 | Bacteria | 64236 |
| 118 | Ga0207644_10014024 | 3300025931 | Bacteria | 5356 |
| 119 | Ga0207690_10001519 | 3300025932 | Bacteria | 14518 |
| 120 | Ga0207690_10002568 | 3300025932 | Bacteria | 10968 |
| 121 | Ga0207690_10011391 | 3300025932 | Bacteria | 5319 |
| 122 | Ga0207690_10029355 | 3300025932 | Bacteria | 3495 |
| 123 | Ga0207690_10095184 | 3300025932 | Bacteria | 2115 |
| 124 | Ga0207706_10011698 | 3300025933 | Bacteria | 8002 |
| 125 | Ga0207709_10062290 | 3300025935 | Bacteria | 2334 |
| 126 | Ga0207691_10055177 | 3300025940 | Bacteria | 3622 |
| 127 | Ga0207661_10006608 | 3300025944 | Bacteria | 8196 |
| 128 | Ga0207661_10013317 | 3300025944 | Bacteria | 6006 |
| 129 | Ga0207667_10001852 | 3300025949 | Bacteria | 26559 |
| 130 | Ga0207667_10001877 | 3300025949 | Bacteria | 26426 |
| 131 | Ga0207667_10027404 | 3300025949 | Bacteria | 6202 |
| 132 | Ga0207651_10075973 | 3300025960 | Bacteria | 2400 |
| 133 | Ga0207640_10004286 | 3300025981 | Bacteria | 7721 |
| 134 | Ga0207640_10008569 | 3300025981 | Bacteria | 5679 |
| 135 | Ga0207640_10037989 | 3300025981 | Bacteria | 3034 |
| 136 | Ga0207639_10001642 | 3300026041 | Bacteria | 15068 |
| 137 | Ga0207639_10112551 | 3300026041 | Bacteria | 2221 |
| 138 | Ga0207639_10113722 | 3300026041 | Bacteria | 2211 |
| 139 | Ga0207678_10011232 | 3300026067 | Bacteria | 7865 |
| 140 | Ga0207678_10030609 | 3300026067 | Bacteria | 4698 |
| 141 | Ga0207708_10118269 | 3300026075 | Bacteria | 2063 |
| 142 | Ga0207702_10026423 | 3300026078 | Bacteria | 4820 |
| 143 | Ga0207674_10019405 | 3300026116 | Bacteria | 7364 |
| 144 | Ga0207674_10034678 | 3300026116 | Bacteria | 5272 |
| 145 | Ga0207698_10002364 | 3300026142 | Bacteria | 11187 |
| 146 | Ga0207698_10006131 | 3300026142 | Bacteria | 7483 |
| 147 | Ga0209971_1012103 | 3300027682 | Bacteria | 2042 |
| 148 | Ga0307405_10051087 | 3300031731 | Bacteria | 2564 |
| 149 | Ga0307405_10095232 | 3300031731 | Bacteria | 1982 |
| 150 | Ga0307410_10023758 | 3300031852 | Bacteria | 3818 |
| 151 | Ga0307410_10178739 | 3300031852 | Bacteria | 1605 |
| 152 | Ga0307407_10105576 | 3300031903 | Bacteria | 1757 |
| 153 | Ga0307414_10003438 | 3300032004 | Bacteria | 8448 |
| 154 | Ga0307414_10007807 | 3300032004 | Bacteria | 6034 |
| 155 | Ga0307414_10087391 | 3300032004 | Bacteria | 2303 |
| 156 | Ga0307414_10097257 | 3300032004 | Bacteria | 2205 |
| 157 | Ga0307415_100000673 | 3300032126 | Bacteria | 15146 |
| 158 | Ga0307415_100010055 | 3300032126 | Bacteria | 5340 |
| 159 | Ga0307415_100120632 | 3300032126 | Bacteria | 1965 |
| 160 | Ga0395898_0292182 | 3300037466 | Bacteria | 1555 |
| 161 | Ga0395905_0001158 | 3300037471 | Bacteria | 32992 |
| 162 | Ga0395901_0002225 | 3300038443 | Bacteria | 19803 |
| 163 | Ga0395901_0006839 | 3300038443 | Bacteria | 11518 |
| 164 | Ga0439446_0021581 | 3300042156 | Bacteria | 1821 |
| 165 | Ga0466963_0126562 | 3300044694 | Bacteria | 1762 |
| 166 | Ga0466970_0000558 | 3300044765 | Bacteria | 18194 |
| 167 | Ga0466957_0046753 | 3300044842 | Bacteria | 2629 |
| 168 | Ga0466960_0047281 | 3300044901 | Bacteria | 2063 |
| 169 | Ga0466958_0097589 | 3300045836 | Bacteria | 1824 |
| 170 | Ga0466967_0103443 | 3300045976 | Bacteria | 2606 |
| 171 | Ga0496103_0040640 | 3300048906 | Bacteria | 2857 |
| 172 | Ga0496106_0017586 | 3300048909 | Bacteria | 5288 |
| 173 | Ga0496107_0056452 | 3300048910 | Bacteria | 2837 |
| 174 | Ga0496109_0017099 | 3300048912 | Bacteria | 6348 |
| 175 | Ga0496109_0193037 | 3300048912 | Bacteria | 1913 |
| 176 | Ga0496110_0064950 | 3300048913 | Bacteria | 3226 |
| 177 | Ga0496110_0084530 | 3300048913 | Bacteria | 2832 |
| 178 | Ga0496110_0110869 | 3300048913 | Bacteria | 2466 |
| 179 | Ga0496111_0037881 | 3300048914 | Bacteria | 3452 |
| 180 | Ga0496111_0183335 | 3300048914 | Bacteria | 1556 |
| 181 | Ga0496112_0025214 | 3300048915 | Bacteria | 5707 |
| 182 | Ga0501031_0012646 | 3300049568 | Bacteria | 5511 |
| 183 | Ga0501031_0046605 | 3300049568 | Bacteria | 2827 |
| 184 | Ga0501032_0007326 | 3300049569 | Bacteria | 8065 |
| 185 | Ga0501034_0057192 | 3300049571 | Bacteria | 3921 |
| 186 | Ga0501034_0063322 | 3300049571 | Bacteria | 3712 |
| 187 | Ga0501036_0139582 | 3300049572 | Bacteria | 2046 |
| 188 | Ga0501037_0004971 | 3300049573 | Bacteria | 9668 |
| 189 | Ga0501040_0007981 | 3300049576 | Bacteria | 6870 |
| 190 | Ga0501041_0010281 | 3300049577 | Bacteria | 5513 |
| 191 | Ga0501042_0002616 | 3300049578 | Bacteria | 11072 |
| 192 | Ga0501047_0060757 | 3300049581 | Bacteria | 3646 |
| 193 | Ga0501047_0098059 | 3300049581 | Bacteria | 2809 |
| 194 | Ga0501048_0010674 | 3300049582 | Bacteria | 6852 |
| 195 | Ga0501067_0028763 | 3300049583 | Bacteria | 3080 |
| 196 | Ga0501067_0035582 | 3300049583 | Bacteria | 2765 |
| 197 | Ga0501068_0022123 | 3300049584 | Bacteria | 3716 |
| 198 | Ga0501069_0021190 | 3300049585 | Bacteria | 3526 |
| 199 | Ga0501069_0077728 | 3300049585 | Bacteria | 1866 |
| 200 | Ga0501070_0005002 | 3300049586 | Bacteria | 11312 |
| 201 | Ga0501070_0045748 | 3300049586 | Bacteria | 3639 |
| 202 | Ga0501070_0067431 | 3300049586 | Bacteria | 2963 |
| 203 | Ga0501070_0101062 | 3300049586 | Bacteria | 2385 |
| 204 | Ga0501074_0016398 | 3300049590 | Bacteria | 5380 |
| 205 | Ga0501074_0090819 | 3300049590 | Bacteria | 2187 |
| 206 | Ga0501076_0005941 | 3300049592 | Bacteria | 8814 |
| 207 | Ga0501079_0153994 | 3300049741 | Bacteria | 1792 |
| 208 | Ga0501080_0000847 | 3300049742 | Bacteria | 25007 |
| 209 | Ga0501081_0165476 | 3300049743 | Bacteria | 1595 |
| 210 | Ga0501035_0014195 | 3300049822 | Bacteria | 7351 |
| 211 | Ga0501044_0039517 | 3300049823 | Bacteria | 4922 |
| 212 | Ga0501044_0061996 | 3300049823 | Bacteria | 3824 |
| 213 | nmdc:mga05p37_284_c1 | 3300050507 | Bacteria | 52993 |
| 214 | Ga0500573_0018837 | 3300053140 | Bacteria | 3942 |
| 215 | Ga0500661_010610 | 3300055283 | Bacteria | 1676 |
| 216 | Ga0530510_0045847 | 3300061734 | Bacteria | 3158 |
| 217 | 2538831956 | 2537561836 | Bacteria | 3910579 |
| 218 | 2643832049 | 2643221562 | Bacteria | 4048635 |
| 219 | 2643895603 | 2643221577 | Bacteria | 3710843 |
| 220 | 2644036257 | 2643221604 | Bacteria | 5014917 |
| 221 | 2644101973 | 2643221617 | Bacteria | 5139111 |
| 222 | 2644115196 | 2643221620 | Bacteria | 5134593 |
| 223 | 2644477785 | 2643221685 | Bacteria | 3673288 |
| 224 | 2644535612 | 2643221696 | Bacteria | 5431823 |
| 225 | 2852646977 | 2852646457 | Bacteria | 3408613 |
| 226 | 2855390915 | 2855386786 | Bacteria | 4752232 |
| 227 | 2895397379 | 2895395659 | Bacteria | 3983269 |
| 228 | 2919399102 | 2919395869 | Bacteria | 3704152 |
| 229 | 2939614993 | 2939611941 | Bacteria | 3892017 |
| 230 | 2945971431 | 2945968032 | Bacteria | 4111363 |
| 231 | 2946034165 | 2946033335 | Bacteria | 3835514 |
| 232 | 2946043764 | 2946041624 | Bacteria | 4191385 |
| 233 | Ga0501070_0067303 | |||
| 234 | JGI24736J21556_1003189 | |||
| 235 | JGI24740J21852_10003272 | |||
| 236 | JGI25162J39368_1000547 | |||
| 237 | JGI25162J39368_1001617 | |||
| 238 | JGI25164J39214_1000525 | |||
| 239 | JGI25164J39214_1001157 | |||
| 240 | JGI25165J46597_1000662 | |||
| 241 | JGI25165J46597_1003046 | |||
| 242 | Ga0070683_100001385 | |||
| 243 | Ga0070683_100018769 | |||
| 244 | Ga0070683_100048676 | |||
| 245 | Ga0070683_100072659 | |||
| 246 | Ga0070680_100026294 | |||
| 247 | Ga0070682_100000848 | |||
| 248 | Ga0070682_100030978 | |||
| 249 | Ga0070660_100030014 | |||
| 250 | Ga0070660_100050342 | |||
| 251 | Ga0070691_10009642 | |||
| 252 | Ga0070661_100024753 | |||
| 253 | Ga0070661_100031378 | |||
| 254 | Ga0070661_100032277 | |||
| 255 | Ga0070692_10001833 | |||
| 256 | Ga0070692_10006840 | |||
| 257 | Ga0070659_100006062 | |||
| 258 | Ga0070659_100029214 | |||
| 259 | Ga0070714_100000244 | |||
| 260 | Ga0070714_100002987 | |||
| 261 | Ga0070714_100025038 | |||
| 262 | Ga0070713_100001046 | |||
| 263 | Ga0070694_100063860 | |||
| 264 | Ga0070663_100020255 | |||
| 265 | Ga0070663_100160442 | |||
| 266 | Ga0070681_10013465 | |||
| 267 | Ga0070681_10014233 | |||
| 268 | Ga0070681_10084871 | |||
| 269 | Ga0070679_100137910 | |||
| 270 | Ga0070684_100000270 | |||
| 271 | Ga0070684_100075680 | |||
| 272 | Ga0068853_100013278 | |||
| 273 | Ga0068853_100018931 | |||
| 274 | Ga0068853_100051515 | |||
| 275 | Ga0070696_100001129 | |||
| 276 | Ga0070696_100050409 | |||
| 277 | Ga0070696_100098803 | |||
| 278 | Ga0070693_100040181 | |||
| 279 | Ga0068855_100166512 | |||
| 280 | Ga0070664_100038197 | |||
| 281 | Ga0068857_100012948 | |||
| 282 | Ga0068857_100013298 | |||
| 283 | Ga0068854_100002545 | |||
| 284 | Ga0068854_100007196 | |||
| 285 | Ga0068854_100100440 | |||
| 286 | Ga0068856_100018618 | |||
| 287 | Ga0068852_100043620 | |||
| 288 | Ga0068852_100059009 | |||
| 289 | Ga0070712_100089472 | |||
| 290 | Ga0105245_10181924 | |||
| 291 | Ga0105245_10296618 | |||
| 292 | Ga0114129_10001855 | |||
| 293 | Ga0105237_10297259 | |||
| 294 | Ga0105238_10012787 | |||
| 295 | Ga0105238_10026129 | |||
| 296 | Ga0105246_10062292 | |||
| 297 | Ga0157373_10017539 | |||
| 298 | Ga0157373_10045589 | |||
| 299 | Ga0157373_10082113 | |||
| 300 | Ga0157371_10006947 | |||
| 301 | Ga0157371_10024807 | |||
| 302 | Ga0157371_10028126 | |||
| 303 | Ga0157371_10122922 | |||
| 304 | Ga0157370_10009918 | |||
| 305 | Ga0157370_10013253 | |||
| 306 | Ga0157370_10025955 | |||
| 307 | Ga0157370_10108605 | |||
| 308 | Ga0157370_10165567 | |||
| 309 | Ga0157369_10003457 | |||
| 310 | Ga0157372_10013088 | |||
| 311 | Ga0157372_10018322 | |||
| 312 | Ga0157372_10019134 | |||
| 313 | Ga0157372_10154514 | |||
| 314 | Ga0182008_10006809 | |||
| 315 | Ga0182008_10011242 | |||
| 316 | Ga0182007_10007620 | |||
| 317 | Ga0182007_10011687 | |||
| 318 | Ga0206356_10490854 | |||
| 319 | Ga0206354_10884761 | |||
| 320 | Ga0206353_10931654 | |||
| 321 | Ga0206353_11386851 | |||
| 322 | Ga0154015_1321256 | |||
| 323 | Ga0207427_100147 | |||
| 324 | Ga0207427_100205 | |||
| 325 | Ga0209437_100005 | |||
| 326 | Ga0209437_100349 | |||
| 327 | Ga0209026_1000090 | |||
| 328 | Ga0209233_1000011 | |||
| 329 | Ga0209233_1000315 | |||
| 330 | Ga0207647_10004221 | |||
| 331 | Ga0207705_10002294 | |||
| 332 | Ga0207705_10008105 | |||
| 333 | Ga0207654_10093623 | |||
| 334 | Ga0207707_10004513 | |||
| 335 | Ga0207707_10009280 | |||
| 336 | Ga0207707_10016289 | |||
| 337 | Ga0207695_10004009 | |||
| 338 | Ga0207695_10089177 | |||
| 339 | Ga0207671_10122800 | |||
| 340 | Ga0207660_10008532 | |||
| 341 | Ga0207657_10013934 | |||
| 342 | Ga0207657_10046215 | |||
| 343 | Ga0207657_10142312 | |||
| 344 | Ga0207649_10002874 | |||
| 345 | Ga0207649_10018434 | |||
| 346 | Ga0207652_10017063 | |||
| 347 | Ga0207694_10011661 | |||
| 348 | Ga0207700_10008862 | |||
| 349 | Ga0207664_10000132 | |||
| 350 | Ga0207644_10014024 | |||
| 351 | Ga0207690_10001519 | |||
| 352 | Ga0207690_10002568 | |||
| 353 | Ga0207690_10011391 | |||
| 354 | Ga0207690_10029355 | |||
| 355 | Ga0207690_10095184 | |||
| 356 | Ga0207706_10011698 | |||
| 357 | Ga0207709_10062290 | |||
| 358 | Ga0207691_10055177 | |||
| 359 | Ga0207661_10006608 | |||
| 360 | Ga0207661_10013317 | |||
| 361 | Ga0207667_10001852 | |||
| 362 | Ga0207667_10001877 | |||
| 363 | Ga0207667_10027404 | |||
| 364 | Ga0207651_10075973 | |||
| 365 | Ga0207640_10004286 | |||
| 366 | Ga0207640_10008569 | |||
| 367 | Ga0207640_10037989 | |||
| 368 | Ga0207639_10001642 | |||
| 369 | Ga0207639_10112551 | |||
| 370 | Ga0207639_10113722 | |||
| 371 | Ga0207678_10011232 | |||
| 372 | Ga0207678_10030609 | |||
| 373 | Ga0207708_10118269 | |||
| 374 | Ga0207702_10026423 | |||
| 375 | Ga0207674_10019405 | |||
| 376 | Ga0207674_10034678 | |||
| 377 | Ga0207698_10002364 | |||
| 378 | Ga0207698_10006131 | |||
| 379 | Ga0209971_1012103 | |||
| 380 | Ga0307405_10051087 | |||
| 381 | Ga0307405_10095232 | |||
| 382 | Ga0307410_10023758 | |||
| 383 | Ga0307410_10178739 | |||
| 384 | Ga0307407_10105576 | |||
| 385 | Ga0307414_10003438 | |||
| 386 | Ga0307414_10007807 | |||
| 387 | Ga0307414_10087391 | |||
| 388 | Ga0307414_10097257 | |||
| 389 | Ga0307415_100000673 | |||
| 390 | Ga0307415_100010055 | |||
| 391 | Ga0307415_100120632 | |||
| 392 | Ga0395898_0292182 | |||
| 393 | Ga0395905_0001158 | |||
| 394 | Ga0395901_0002225 | |||
| 395 | Ga0395901_0006839 | |||
| 396 | Ga0439446_0021581 | |||
| 397 | Ga0466963_0126562 | |||
| 398 | Ga0466970_0000558 | |||
| 399 | Ga0466957_0046753 | |||
| 400 | Ga0466960_0047281 | |||
| 401 | Ga0466958_0097589 | |||
| 402 | Ga0466967_0103443 | |||
| 403 | Ga0496103_0040640 | |||
| 404 | Ga0496106_0017586 | |||
| 405 | Ga0496107_0056452 | |||
| 406 | Ga0496109_0017099 | |||
| 407 | Ga0496109_0193037 | |||
| 408 | Ga0496110_0064950 | |||
| 409 | Ga0496110_0084530 | |||
| 410 | Ga0496110_0110869 | |||
| 411 | Ga0496111_0037881 | |||
| 412 | Ga0496111_0183335 | |||
| 413 | Ga0496112_0025214 | |||
| 414 | Ga0501031_0012646 | |||
| 415 | Ga0501031_0046605 | |||
| 416 | Ga0501032_0007326 | |||
| 417 | Ga0501034_0057192 | |||
| 418 | Ga0501034_0063322 | |||
| 419 | Ga0501036_0139582 | |||
| 420 | Ga0501037_0004971 | |||
| 421 | Ga0501040_0007981 | |||
| 422 | Ga0501041_0010281 | |||
| 423 | Ga0501042_0002616 | |||
| 424 | Ga0501047_0060757 | |||
| 425 | Ga0501047_0098059 | |||
| 426 | Ga0501048_0010674 | |||
| 427 | Ga0501067_0028763 | |||
| 428 | Ga0501067_0035582 | |||
| 429 | Ga0501068_0022123 | |||
| 430 | Ga0501069_0021190 | |||
| 431 | Ga0501069_0077728 | |||
| 432 | Ga0501070_0005002 | |||
| 433 | Ga0501070_0045748 | |||
| 434 | Ga0501070_0067431 | |||
| 435 | Ga0501070_0101062 | |||
| 436 | Ga0501074_0016398 | |||
| 437 | Ga0501074_0090819 | |||
| 438 | Ga0501076_0005941 | |||
| 439 | Ga0501079_0153994 | |||
| 440 | Ga0501080_0000847 | |||
| 441 | Ga0501081_0165476 | |||
| 442 | Ga0501035_0014195 | |||
| 443 | Ga0501044_0039517 | |||
| 444 | Ga0501044_0061996 | |||
| 445 | nmdc:mga05p37_284_c1 | |||
| 446 | Ga0500573_0018837 | |||
| 447 | Ga0500661_010610 | |||
| 448 | Ga0530510_0045847 | |||
| 449 | 2538831956 | |||
| 450 | 2643832049 | |||
| 451 | 2643895603 | |||
| 452 | 2644036257 | |||
| 453 | 2644101973 | |||
| 454 | 2644115196 | |||
| 455 | 2644477785 | |||
| 456 | 2644535612 | |||
| 457 | 2852646977 | |||
| 458 | 2855390915 | |||
| 459 | 2895397379 | |||
| 460 | 2919399102 | |||
| 461 | 2939614993 | |||
| 462 | 2945971431 | |||
| 463 | 2946034165 | |||
| 464 | 2946043764 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5c0x-assembly1.cif.gz_J | structure of a 12-subunit nuclear exosome complex bound to structured rna | 0.8624 | 20 | 478 |
| 2vnu-assembly1.cif.gz_D | crystal structure of sc rrp44 | 0.8431 | 21 | 475 |
| 7aju-assembly1.cif.gz_EK | cryo-em structure of the 90s-exosome super-complex (state post-a1-exosome) | 0.8414 | 21 | 477 |
| 7did-assembly1.cif.gz_A | mycoplasma genitalium rnase r in complex with ribose methylated single-stranded rna | 0.8395 | 11 | 478 |
| 7dcy-assembly1.cif.gz_A | error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) | 0.8366 | 11 | 478 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q8VDK1_45_315_3.60.110.10 | Alpha Beta;4-Layer Sandwich;Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase;Carbon-nitrogen hydrolase | 0.7782 | 144 | 163 | 3.60.110.10 |
| af_Q09316_478_542_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.7521 | 415 | 478 | 2.40.50.140 |
| af_Q9VCX7_866_936_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.7312 | 415 | 478 | 2.40.50.140 |
| af_F7EPZ4_913_995_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.7298 | 417 | 478 | 2.40.50.140 |
| af_K7LE88_1237_1369_3.30.420.10 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.7294 | 143 | 164 | 3.30.420.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7W0ZB21-F1-model_v4 | RNB domain-containing ribonuclease | 0.9687 | 3 | 414 |
GO:0003723
GO:0004540 GO:0006402 |
| AF-A0A7Y5UDR2-F1-model_v4 | deleted | 0.9665 | 54 | 478 |
|
| AF-A0A522RMJ4-F1-model_v4 | RNB domain-containing ribonuclease | 0.9657 | 1 | 478 |
GO:0000175
GO:0000932 GO:0003723 GO:0006402 |
| AF-A0A502CGZ6-F1-model_v4 | RNB domain-containing ribonuclease | 0.9624 | 22 | 478 |
GO:0000175
GO:0000932 GO:0003723 GO:0006402 |
| AF-A0A1C4N7X1-F1-model_v4 | RNB domain-containing protein | 0.9611 | 3 | 430 |
GO:0000175
GO:0000932 GO:0003723 GO:0006402 |