F345080

General Info

Members Datasets Scaffolds Average Seq Length
232 147 464 326

Family's Representative Sequence

Representative Sequence 3300014969|Ga0157376_10262148|Ga0157376_102621482
Length 362
Sequence LRHRSGAESQDPIHYGGTFAYHEAVEVRMNVLVTGGAGYIGSVICDHLLAEGHRVVVIDNLSKGHREALAEEVTLVEADLLDSAAVSDALKRHQVNAVIHMAASSLVGESMTQPSKYYRNNLWATLGLLEAMTYSGISTLVFSSTAAVYGNPEKQPIEEHDPTTPTNPYGETKLAVERALHWYSLAHGLKYVALRYFNAAGATDTRGERHSPETHLIPLILDAAEKITSVAVFGDDYPTHDGTCVRDYIHVSDLSRAHVMALNSLARGGQSATFNLGCGQGYSVREVIDAAQRVTGRSINVEIQPRRAGDPAVLVASSARIREALSWTPKHELLDDIVGSAWIWKQKFTSAAARYSESQHAR

Samples

Sample ID Description Type Environment
1 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
54 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
55 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
56 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
57 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
58 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
61 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
64 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
96 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
97 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
98 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
99 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
100 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
101 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
102 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
103 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
104 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
105 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
106 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
107 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
108 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
109 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
110 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
111 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
112 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
113 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
114 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
115 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
116 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
117 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
118 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
123 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
124 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
125 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
126 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
127 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
128 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
129 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
130 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
131 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
132 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
134 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
135 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
136 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
137 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
138 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
139 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
140 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
141 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
142 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
143 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
144 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
145 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
146 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
147 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.14
Metatranscriptomes 0
Isolates 0.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.29
Nodule 0
Rhizoplane 2.16
Rhizosphere 95.69
Stem 0
Stem Tuber 0
Unclassified 4.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157376_10262148 3300014969 Bacteria 1620
2 rootH1_10007683 3300003323 Bacteria 1473
3 Ga0065712_10207515 3300005290 Unclassified 1085
4 Ga0065715_10005022 3300005293 Bacteria 5184
5 Ga0065715_10128135 3300005293 Unclassified 2072
6 Ga0065707_10001953 3300005295 Bacteria 7273
7 Ga0070658_10005434 3300005327 Bacteria 10338
8 Ga0070670_100094259 3300005331 Bacteria 2575
9 Ga0070670_100099151 3300005331 Bacteria 2507
10 Ga0068869_100125326 3300005334 Bacteria 1969
11 Ga0070680_100358663 3300005336 Bacteria 1240
12 Ga0068868_100095111 3300005338 Bacteria 2404
13 Ga0070689_100000386 3300005340 Bacteria 25853
14 Ga0070689_100019680 3300005340 Bacteria 4994
15 Ga0070689_100047478 3300005340 Bacteria 3311
16 Ga0070687_100015732 3300005343 Bacteria 3429
17 Ga0070687_100071181 3300005343 Bacteria 1868
18 Ga0070669_100022071 3300005353 Bacteria 4553
19 Ga0070671_100418613 3300005355 Bacteria 1147
20 Ga0070703_10041397 3300005406 Bacteria 1436
21 Ga0070705_100227563 3300005440 Unclassified 1295
22 Ga0070700_100036616 3300005441 Bacteria 2978
23 Ga0070700_100052686 3300005441 Bacteria 2538
24 Ga0070694_100009628 3300005444 Bacteria 5929
25 Ga0070694_100048828 3300005444 Bacteria 2848
26 Ga0070708_100006341 3300005445 Bacteria 9416
27 Ga0070708_100016682 3300005445 Bacteria 6102
28 Ga0068867_100013851 3300005459 Bacteria 5708
29 Ga0068867_100094729 3300005459 Bacteria 2271
30 Ga0070706_100034526 3300005467 Bacteria 4672
31 Ga0070706_100125342 3300005467 Bacteria 2395
32 Ga0070706_100187255 3300005467 Bacteria 1934
33 Ga0070698_100000108 3300005471 Bacteria 69455
34 Ga0070698_100002345 3300005471 Bacteria 20935
35 Ga0070698_100358029 3300005471 Bacteria 1391
36 Ga0070697_100003908 3300005536 Bacteria 11445
37 Ga0070697_100124573 3300005536 Bacteria 2158
38 Ga0070697_100427720 3300005536 Bacteria 1151
39 Ga0068853_100005891 3300005539 Bacteria 9666
40 Ga0070672_100117530 3300005543 Unclassified 2174
41 Ga0070686_100027783 3300005544 Bacteria 3426
42 Ga0070695_100040673 3300005545 Bacteria 2944
43 Ga0070695_100218906 3300005545 Bacteria 1371
44 Ga0070696_100025541 3300005546 Bacteria 4017
45 Ga0070696_100063038 3300005546 Bacteria 2596
46 Ga0070704_100062423 3300005549 Bacteria 2671
47 Ga0070704_100108708 3300005549 Bacteria 2106
48 Ga0070702_100006452 3300005615 Bacteria 5553
49 Ga0068859_100019903 3300005617 Bacteria 6737
50 Ga0068859_100032859 3300005617 Bacteria 5212
51 Ga0068859_100237759 3300005617 Bacteria 1910
52 Ga0068859_100557367 3300005617 Bacteria 1240
53 Ga0068864_100061775 3300005618 Bacteria 3245
54 Ga0068864_100121785 3300005618 Bacteria 2333
55 Ga0068864_100149848 3300005618 Unclassified 2112
56 Ga0068870_10022781 3300005840 Bacteria 3081
57 Ga0068863_100014217 3300005841 Bacteria 7668
58 Ga0068863_100218659 3300005841 Bacteria 1835
59 Ga0068858_100257763 3300005842 Bacteria 1657
60 Ga0068860_100368371 3300005843 Bacteria 1416
61 Ga0068862_100025538 3300005844 Bacteria 4960
62 Ga0068862_100025907 3300005844 Bacteria 4926
63 Ga0081455_10017369 3300005937 Bacteria 6902
64 Ga0081455_10148113 3300005937 Bacteria 1813
65 Ga0081455_10164332 3300005937 Bacteria 1698
66 Ga0081539_10001509 3300005985 Bacteria 39295
67 Ga0081539_10127826 3300005985 Bacteria 1253
68 Ga0075366_10000510 3300006195 Bacteria 17956
69 Ga0097621_100001965 3300006237 Bacteria 14028
70 Ga0097621_100110152 3300006237 Bacteria 2326
71 Ga0068871_100000272 3300006358 Bacteria 35562
72 Ga0068871_100062041 3300006358 Bacteria 3054
73 Ga0068871_100134864 3300006358 Bacteria 2096
74 Ga0075428_100328838 3300006844 Bacteria 1642
75 Ga0075431_100018837 3300006847 Bacteria 7031
76 Ga0075431_100028411 3300006847 Bacteria 5747
77 Ga0075431_100045643 3300006847 Bacteria 4517
78 Ga0075433_10040179 3300006852 Bacteria 4048
79 Ga0075433_10152905 3300006852 Bacteria 2053
80 Ga0075434_100070277 3300006871 Bacteria 3492
81 Ga0097620_100019906 3300006931 Bacteria 6737
82 Ga0097620_100032860 3300006931 Bacteria 5212
83 Ga0097620_100237763 3300006931 Bacteria 1910
84 Ga0097620_100557327 3300006931 Bacteria 1240
85 Ga0075435_100047067 3300007076 Bacteria 3462
86 Ga0111539_10000971 3300009094 Bacteria 37659
87 Ga0111539_10024480 3300009094 Bacteria 7405
88 Ga0111539_10180987 3300009094 Bacteria 2462
89 Ga0105245_10450317 3300009098 Bacteria 1296
90 Ga0114129_10049285 3300009147 Bacteria 5918
91 Ga0114129_10123001 3300009147 Unclassified 3570
92 Ga0114129_10247600 3300009147 Bacteria 2394
93 Ga0114129_10469633 3300009147 Bacteria 1648
94 Ga0114129_10709076 3300009147 Bacteria 1292
95 Ga0105243_10041077 3300009148 Bacteria 3617
96 Ga0105241_10147261 3300009174 Bacteria 1923
97 Ga0105241_10158517 3300009174 Bacteria 1858
98 Ga0105242_10050426 3300009176 Bacteria 3389
99 Ga0105248_10037602 3300009177 Bacteria 5415
100 Ga0105248_10213067 3300009177 Bacteria 2176
101 Ga0105249_10004197 3300009553 Bacteria 12450
102 Ga0105249_10063001 3300009553 Bacteria 3405
103 Ga0105249_10076566 3300009553 Bacteria 3101
104 Ga0105249_10218185 3300009553 Bacteria 1876
105 Ga0157373_10010307 3300013100 Bacteria 6886
106 Ga0157378_10628453 3300013297 Bacteria 1088
107 Ga0163162_10058097 3300013306 Bacteria 3896
108 Ga0163162_10469052 3300013306 Unclassified 1390
109 Ga0157375_10123971 3300013308 Bacteria 2697
110 Ga0157380_10054197 3300014326 Bacteria 3182
111 Ga0157380_10059965 3300014326 Bacteria 3039
112 Ga0157380_10088307 3300014326 Bacteria 2551
113 Ga0157376_10033130 3300014969 Bacteria 4155
114 Ga0163161_10018214 3300017792 Bacteria 4923
115 Ga0209437_111690 3300025233 Bacteria 1304
116 Ga0207688_10077350 3300025901 Bacteria 1896
117 Ga0207680_10032977 3300025903 Bacteria 2950
118 Ga0207699_10266780 3300025906 Bacteria 1185
119 Ga0207643_10083100 3300025908 Bacteria 1858
120 Ga0207643_10099798 3300025908 Bacteria 1702
121 Ga0207705_10011579 3300025909 Bacteria 6376
122 Ga0207684_10151199 3300025910 Bacteria 1997
123 Ga0207684_10174864 3300025910 Bacteria 1851
124 Ga0207662_10042657 3300025918 Bacteria 2675
125 Ga0207681_10095180 3300025923 Bacteria 2136
126 Ga0207650_10285584 3300025925 Unclassified 1344
127 Ga0207687_10148497 3300025927 Bacteria 1786
128 Ga0207706_10110467 3300025933 Bacteria 2419
129 Ga0207686_10113504 3300025934 Bacteria 1832
130 Ga0207670_10000161 3300025936 Bacteria 44305
131 Ga0207670_10050599 3300025936 Bacteria 2786
132 Ga0207691_10116396 3300025940 Bacteria 2372
133 Ga0207711_10155066 3300025941 Bacteria 2069
134 Ga0207689_10016946 3300025942 Bacteria 6164
135 Ga0207689_10138236 3300025942 Bacteria 2006
136 Ga0207651_10116511 3300025960 Bacteria 2017
137 Ga0207712_10128218 3300025961 Unclassified 1929
138 Ga0207677_10059593 3300026023 Bacteria 2633
139 Ga0207639_10007316 3300026041 Bacteria 7520
140 Ga0207708_10015160 3300026075 Bacteria 5776
141 Ga0207708_10035426 3300026075 Bacteria 3798
142 Ga0207708_10098829 3300026075 Bacteria 2256
143 Ga0207641_10029771 3300026088 Bacteria 4515
144 Ga0207641_10273239 3300026088 Bacteria 1586
145 Ga0207648_10003789 3300026089 Bacteria 15798
146 Ga0207648_10094406 3300026089 Bacteria 2616
147 Ga0207648_10327755 3300026089 Bacteria 1377
148 Ga0207676_10305087 3300026095 Bacteria 1455
149 Ga0207674_10018706 3300026116 Bacteria 7522
150 Ga0207674_10124144 3300026116 Bacteria 2548
151 Ga0207675_100000575 3300026118 Bacteria 35883
152 Ga0207675_100063321 3300026118 Bacteria 3455
153 Ga0207683_10038461 3300026121 Bacteria 4170
154 Ga0207698_10146420 3300026142 Bacteria 2043
155 Ga0207428_10001586 3300027907 Bacteria 23680
156 Ga0268265_10086910 3300028380 Bacteria 2486
157 Ga0268265_10112611 3300028380 Bacteria 2225
158 Ga0268264_10166359 3300028381 Bacteria 1991
159 Ga0265320_10013044 3300031240 Bacteria 4796
160 Ga0265325_10018377 3300031241 Bacteria 3876
161 Ga0265340_10073699 3300031247 Bacteria 1615
162 Ga0265339_10019593 3300031249 Bacteria 3969
163 Ga0265331_10000168 3300031250 Bacteria 81355
164 Ga0265316_10006686 3300031344 Bacteria 10986
165 Ga0307408_100264109 3300031548 Bacteria 1426
166 Ga0265313_10016107 3300031595 Bacteria 4316
167 Ga0265314_10022869 3300031711 Bacteria 4781
168 Ga0265342_10000876 3300031712 Bacteria 30047
169 Ga0307405_10083574 3300031731 Bacteria 2093
170 Ga0307405_10386324 3300031731 Bacteria 1091
171 Ga0307413_10239317 3300031824 Bacteria 1339
172 Ga0307410_10044340 3300031852 Bacteria 2954
173 Ga0307410_10170924 3300031852 Bacteria 1638
174 Ga0307406_10005321 3300031901 Bacteria 7041
175 Ga0307407_10017868 3300031903 Bacteria 3571
176 Ga0307407_10043451 3300031903 Bacteria 2526
177 Ga0307412_10033842 3300031911 Bacteria 3251
178 Ga0307412_10201924 3300031911 Bacteria 1510
179 Ga0307409_100224397 3300031995 Bacteria 1698
180 Ga0307409_100549887 3300031995 Bacteria 1133
181 Ga0307416_100112324 3300032002 Bacteria 2404
182 Ga0307411_10150294 3300032005 Bacteria 1730
183 Ga0307411_10340376 3300032005 Bacteria 1219
184 Ga0307415_100175075 3300032126 Bacteria 1677
185 Ga0307415_100271425 3300032126 Bacteria 1390
186 Ga0373955_0023611 3300035172 Bacteria 3135
187 Ga0373924_0112826 3300035410 Bacteria 1176
188 Ga0316582_0065999 3300036647 Bacteria 2332
189 Ga0242420_025437 3300038996 Bacteria 1076
190 Ga0451577_0031535 3300042876 Bacteria 4782
191 Ga0453683_0000184 3300044673 Bacteria 86818
192 Ga0453683_0023003 3300044673 Bacteria 3972
193 Ga0453684_0001689 3300044712 Bacteria 59652
194 Ga0453684_0003583 3300044712 Bacteria 34658
195 Ga0453684_0013754 3300044712 Bacteria 13086
196 Ga0451576_0094584 3300045051 Bacteria 3108
197 Ga0451576_0117473 3300045051 Unclassified 2769
198 Ga0451576_0371831 3300045051 Bacteria 1498
199 Ga0495586_0009698 3300046535 Bacteria 5127
200 Ga0495647_0010870 3300046681 Bacteria 3108
201 Ga0495636_0019620 3300047318 Bacteria 2719
202 Ga0495686_0000027 3300047472 Bacteria 382657
203 Ga0495615_0008915 3300048090 Bacteria 1954
204 Ga0496104_0000053 3300048907 Bacteria 135895
205 Ga0496104_0123995 3300048907 Bacteria 2480
206 Ga0496104_0151390 3300048907 Bacteria 2227
207 Ga0496105_0164437 3300048908 Bacteria 1821
208 Ga0496109_0000054 3300048912 Bacteria 122139
209 Ga0496126_0000063 3300048929 Bacteria 256841
210 Ga0501038_0007380 3300049574 Bacteria 10140
211 Ga0501076_0100309 3300049592 Bacteria 2332
212 Ga0501233_011786 3300049668 Bacteria 1745
213 Ga0501249_014890 3300049679 Bacteria 1659
214 Ga0501221_015728 3300049704 Bacteria 1423
215 Ga0501283_002419 3300049779 Bacteria 2425
216 nmdc:mga0k408_2517_c1 3300050493 Bacteria 9749
217 nmdc:mga05p37_254292_c1 3300050507 Bacteria 2106
218 nmdc:mga05p37_400697_c1 3300050507 Bacteria 1602
219 nmdc:mga0qj67_129381_c1 3300050509 Bacteria 2044
220 nmdc:mga06r32_21969_c1 3300050510 Bacteria 5892
221 nmdc:mga06r32_263231_c1 3300050510 Bacteria 1712
222 nmdc:mga06r32_38296_c1 3300050510 Unclassified 4542
223 nmdc:mga06r32_8708_c1 3300050510 Bacteria 9145
224 nmdc:mga08y16_14331_c1 3300050511 Bacteria 8345
225 nmdc:mga08y16_174349_c1 3300050511 Bacteria 2233
226 nmdc:mga08y16_407018_c1 3300050511 Bacteria 1392
227 nmdc:mga0n895_3796_c1 3300050512 Bacteria 12237
228 nmdc:mga0a205_54311_c1 3300050515 Bacteria 3867
229 Ga0501084_0110440 3300054114 Bacteria 2310
230 Ga0501084_0460396 3300054114 Bacteria 1075
231 2956940331 2956939328 Bacteria 3474458
232 3001121745 3001119090 Bacteria 3449530
233 Ga0157376_10262148
234 rootH1_10007683
235 Ga0065712_10207515
236 Ga0065715_10005022
237 Ga0065715_10128135
238 Ga0065707_10001953
239 Ga0070658_10005434
240 Ga0070670_100094259
241 Ga0070670_100099151
242 Ga0068869_100125326
243 Ga0070680_100358663
244 Ga0068868_100095111
245 Ga0070689_100000386
246 Ga0070689_100019680
247 Ga0070689_100047478
248 Ga0070687_100015732
249 Ga0070687_100071181
250 Ga0070669_100022071
251 Ga0070671_100418613
252 Ga0070703_10041397
253 Ga0070705_100227563
254 Ga0070700_100036616
255 Ga0070700_100052686
256 Ga0070694_100009628
257 Ga0070694_100048828
258 Ga0070708_100006341
259 Ga0070708_100016682
260 Ga0068867_100013851
261 Ga0068867_100094729
262 Ga0070706_100034526
263 Ga0070706_100125342
264 Ga0070706_100187255
265 Ga0070698_100000108
266 Ga0070698_100002345
267 Ga0070698_100358029
268 Ga0070697_100003908
269 Ga0070697_100124573
270 Ga0070697_100427720
271 Ga0068853_100005891
272 Ga0070672_100117530
273 Ga0070686_100027783
274 Ga0070695_100040673
275 Ga0070695_100218906
276 Ga0070696_100025541
277 Ga0070696_100063038
278 Ga0070704_100062423
279 Ga0070704_100108708
280 Ga0070702_100006452
281 Ga0068859_100019903
282 Ga0068859_100032859
283 Ga0068859_100237759
284 Ga0068859_100557367
285 Ga0068864_100061775
286 Ga0068864_100121785
287 Ga0068864_100149848
288 Ga0068870_10022781
289 Ga0068863_100014217
290 Ga0068863_100218659
291 Ga0068858_100257763
292 Ga0068860_100368371
293 Ga0068862_100025538
294 Ga0068862_100025907
295 Ga0081455_10017369
296 Ga0081455_10148113
297 Ga0081455_10164332
298 Ga0081539_10001509
299 Ga0081539_10127826
300 Ga0075366_10000510
301 Ga0097621_100001965
302 Ga0097621_100110152
303 Ga0068871_100000272
304 Ga0068871_100062041
305 Ga0068871_100134864
306 Ga0075428_100328838
307 Ga0075431_100018837
308 Ga0075431_100028411
309 Ga0075431_100045643
310 Ga0075433_10040179
311 Ga0075433_10152905
312 Ga0075434_100070277
313 Ga0097620_100019906
314 Ga0097620_100032860
315 Ga0097620_100237763
316 Ga0097620_100557327
317 Ga0075435_100047067
318 Ga0111539_10000971
319 Ga0111539_10024480
320 Ga0111539_10180987
321 Ga0105245_10450317
322 Ga0114129_10049285
323 Ga0114129_10123001
324 Ga0114129_10247600
325 Ga0114129_10469633
326 Ga0114129_10709076
327 Ga0105243_10041077
328 Ga0105241_10147261
329 Ga0105241_10158517
330 Ga0105242_10050426
331 Ga0105248_10037602
332 Ga0105248_10213067
333 Ga0105249_10004197
334 Ga0105249_10063001
335 Ga0105249_10076566
336 Ga0105249_10218185
337 Ga0157373_10010307
338 Ga0157378_10628453
339 Ga0163162_10058097
340 Ga0163162_10469052
341 Ga0157375_10123971
342 Ga0157380_10054197
343 Ga0157380_10059965
344 Ga0157380_10088307
345 Ga0157376_10033130
346 Ga0163161_10018214
347 Ga0209437_111690
348 Ga0207688_10077350
349 Ga0207680_10032977
350 Ga0207699_10266780
351 Ga0207643_10083100
352 Ga0207643_10099798
353 Ga0207705_10011579
354 Ga0207684_10151199
355 Ga0207684_10174864
356 Ga0207662_10042657
357 Ga0207681_10095180
358 Ga0207650_10285584
359 Ga0207687_10148497
360 Ga0207706_10110467
361 Ga0207686_10113504
362 Ga0207670_10000161
363 Ga0207670_10050599
364 Ga0207691_10116396
365 Ga0207711_10155066
366 Ga0207689_10016946
367 Ga0207689_10138236
368 Ga0207651_10116511
369 Ga0207712_10128218
370 Ga0207677_10059593
371 Ga0207639_10007316
372 Ga0207708_10015160
373 Ga0207708_10035426
374 Ga0207708_10098829
375 Ga0207641_10029771
376 Ga0207641_10273239
377 Ga0207648_10003789
378 Ga0207648_10094406
379 Ga0207648_10327755
380 Ga0207676_10305087
381 Ga0207674_10018706
382 Ga0207674_10124144
383 Ga0207675_100000575
384 Ga0207675_100063321
385 Ga0207683_10038461
386 Ga0207698_10146420
387 Ga0207428_10001586
388 Ga0268265_10086910
389 Ga0268265_10112611
390 Ga0268264_10166359
391 Ga0265320_10013044
392 Ga0265325_10018377
393 Ga0265340_10073699
394 Ga0265339_10019593
395 Ga0265331_10000168
396 Ga0265316_10006686
397 Ga0307408_100264109
398 Ga0265313_10016107
399 Ga0265314_10022869
400 Ga0265342_10000876
401 Ga0307405_10083574
402 Ga0307405_10386324
403 Ga0307413_10239317
404 Ga0307410_10044340
405 Ga0307410_10170924
406 Ga0307406_10005321
407 Ga0307407_10017868
408 Ga0307407_10043451
409 Ga0307412_10033842
410 Ga0307412_10201924
411 Ga0307409_100224397
412 Ga0307409_100549887
413 Ga0307416_100112324
414 Ga0307411_10150294
415 Ga0307411_10340376
416 Ga0307415_100175075
417 Ga0307415_100271425
418 Ga0373955_0023611
419 Ga0373924_0112826
420 Ga0316582_0065999
421 Ga0242420_025437
422 Ga0451577_0031535
423 Ga0453683_0000184
424 Ga0453683_0023003
425 Ga0453684_0001689
426 Ga0453684_0003583
427 Ga0453684_0013754
428 Ga0451576_0094584
429 Ga0451576_0117473
430 Ga0451576_0371831
431 Ga0495586_0009698
432 Ga0495647_0010870
433 Ga0495636_0019620
434 Ga0495686_0000027
435 Ga0495615_0008915
436 Ga0496104_0000053
437 Ga0496104_0123995
438 Ga0496104_0151390
439 Ga0496105_0164437
440 Ga0496109_0000054
441 Ga0496126_0000063
442 Ga0501038_0007380
443 Ga0501076_0100309
444 Ga0501233_011786
445 Ga0501249_014890
446 Ga0501221_015728
447 Ga0501283_002419
448 nmdc:mga0k408_2517_c1
449 nmdc:mga05p37_254292_c1
450 nmdc:mga05p37_400697_c1
451 nmdc:mga0qj67_129381_c1
452 nmdc:mga06r32_21969_c1
453 nmdc:mga06r32_263231_c1
454 nmdc:mga06r32_38296_c1
455 nmdc:mga06r32_8708_c1
456 nmdc:mga08y16_14331_c1
457 nmdc:mga08y16_174349_c1
458 nmdc:mga08y16_407018_c1
459 nmdc:mga0n895_3796_c1
460 nmdc:mga0a205_54311_c1
461 Ga0501084_0110440
462 Ga0501084_0460396
463 2956940331
464 3001121745

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

31

277

0.97

PF04321

RmlD_sub_bind

RmlD substrate binding domain

29

196

0.94

PF08659

KR

KR domain

30

156

0.83

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

31

205

0.82

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

32

338

0.82

PF13460

NAD_binding_10

NAD(P)H-binding

35

215

0.79

PF05368

NmrA

NmrA-like family

31

202

0.75

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

32

286

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
5gy7-assembly1.cif.gz_B x-ray structure of h243i mutant of udp-galactose 4-epimerase from e.coli:evidence for existence of open and closed active site during catalysis. 0.9698 1 319
2udp-assembly1.cif.gz_A udp-galactose 4-epimerase complexed with udp-phenol 0.9637 1 319
1hzj-assembly1.cif.gz_B human udp-galactose 4-epimerase: accommodation of udp-n-acetylglucosamine within the active site 0.9601 2 319
6k0g-assembly1.cif.gz_A crystal structure of udp-glucose 4-epimerase from bifidobacterium longum in complex with nad+ and udp 0.9597 1 324
6k0g-assembly1.cif.gz_A crystal structure of udp-glucose 4-epimerase from bifidobacterium longum in complex with nad+ and udp 0.9568 1 324
ID Description Score Start End Superfamily
4wokA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9678 2 249 3.40.50.720
2c20A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9594 1 249 3.40.50.720
af_Q4DUZ8_207_378_3.90.25.10 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9584 173 319 3.90.25.10
af_A0A1D6K005_288_418_3.90.25.10 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9566 194 322 3.90.25.10
2c20A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9547 1 249 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2V8WCR2-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.9855 1 176 GO:0016853
GO:0033499
AF-A0A8B3RRD1-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.9843 1 104 GO:0016853
GO:0033499
AF-A0A3D3Z994-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.981 37 175 GO:0016853
GO:0033499
AF-B0ZTI8-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.9799 2 198 GO:0016853
GO:0033499
AF-F7KRN4-F1-model_v4 UDP-glucose 4-epimerase 0.9799 175 319 GO:0016853
GO:0033499

Map