F342557

General Info

Members Datasets Scaffolds Average Seq Length
229 166 458 239

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2946072368|2946074146
Length 286
Sequence MSVMDTGSRTNTGSRRDPRVAGLAALAGLLADETRAACLLALLDGRAWTAGELARHAGVAASTLSEHLGRLVAGGLLAEERQGRHRYVRLAGTRVAQLLEDLAAQVTPDPAHRPRGLRATTAGSAMARGRTCYDHLAGRLGIALTDALTARRLIAPAPAPPSAAAHPRSSAETDAAPASAPTDSPVPAPAPDERGTGFALTEAGMRWFEDCGIVLDPAGRRPLARACLDWTERRPHLAGAAGAALCRHALDAGWCVRIGSERAVKVTARGERALAELLGVEPAALC

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
4 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
6 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
7 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
8 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
9 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
10 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
11 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
12 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
13 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
16 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
17 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
18 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
19 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
20 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
21 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
22 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
23 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
24 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
25 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
26 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
27 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
28 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
29 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
30 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
31 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
32 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
33 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
34 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
35 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
36 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
37 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
38 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
39 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
40 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
41 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
42 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
43 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
44 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
45 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
46 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
47 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
48 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
49 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
50 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
51 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
52 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
53 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
54 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
55 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
56 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
57 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
58 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
59 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
60 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
61 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
62 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
63 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
64 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
65 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
68 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
69 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
70 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
71 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
72 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
73 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
74 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
75 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
76 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
77 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
78 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
79 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
80 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
81 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
82 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
83 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
84 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
85 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
86 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
87 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
88 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
89 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
90 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
91 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
92 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
93 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
94 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
95 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
96 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
97 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
100 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
101 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
102 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
103 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
104 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
105 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
106 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
116 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
119 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
120 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
121 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
122 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
123 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
124 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
125 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
126 2643221647 Streptomyces sp. Root369 Isolate Unclassified
127 2643221670 Streptomyces sp. Root431 Isolate Unclassified
128 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
129 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
130 2643221714 Streptomyces sp. Root264 Isolate Unclassified
131 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
132 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
133 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
134 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
135 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
136 2808606448 Streptomyces sp. 193411 Isolate Unclassified
137 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
138 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
139 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
140 2862574272 Streptomyces sp. AcE210 Isolate Nodule
141 2867428634 Streptomyces sp. RP5T Isolate Unclassified
142 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
143 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
144 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
145 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
146 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
147 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
148 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
149 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
150 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
151 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
152 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
153 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
154 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
155 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
156 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
157 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
158 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
159 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
160 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
161 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
162 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
163 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
164 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
165 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
166 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.04
Metatranscriptomes 0
Isolates 20.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.31
Nodule 0.87
Rhizoplane 0
Rhizosphere 83.84
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10012045 3300003322 Bacteria 1645
2 rootH1_10103302 3300003323 Bacteria 1526
3 Ga0068853_100243797 3300005539 Bacteria 1648
4 Ga0081455_10354003 3300005937 Bacteria 1035
5 Ga0075363_100008141 3300006048 Bacteria 4866
6 Ga0068865_100643659 3300006881 Bacteria 900
7 Ga0099826_10049770 3300006948 Bacteria 2824
8 Ga0105244_10087080 3300009036 Bacteria 1539
9 Ga0182007_10000452 3300015262 Bacteria 24843
10 Ga0183367_1010 3300015688 Bacteria 416164
11 Ga0209758_1005153 3300025297 Bacteria 10293
12 Ga0207426_1014523 3300025302 Bacteria 2883
13 Ga0207647_10022572 3300025904 Bacteria 4177
14 Ga0207709_10175006 3300025935 Bacteria 1510
15 Ga0207639_10586772 3300026041 Bacteria 1026
16 Ga0307512_10014964 3300030522 Bacteria 7211
17 Ga0307512_10039142 3300030522 Bacteria 3976
18 Ga0307513_10006824 3300031456 Bacteria 14878
19 Ga0307508_10001243 3300031616 Bacteria 29109
20 Ga0307508_10015356 3300031616 Bacteria 6976
21 Ga0307514_10027494 3300031649 Bacteria 4595
22 Ga0307514_10039857 3300031649 Bacteria 3707
23 Ga0307514_10110640 3300031649 Bacteria 1946
24 Ga0307514_10176108 3300031649 Bacteria 1387
25 Ga0307516_10003084 3300031730 Bacteria 21689
26 Ga0307510_10051799 3300033180 Bacteria 4337
27 Ga0395898_0004976 3300037466 Bacteria 14419
28 Ga0395905_0170693 3300037471 Bacteria 2043
29 Ga0395901_0143160 3300038443 Bacteria 2513
30 Ga0439436_0000159 3300041404 Bacteria 15810
31 Ga0439439_0004141 3300041406 Bacteria 3246
32 Ga0451853_0855914 3300041512 Bacteria 1555
33 Ga0439433_0000913 3300041999 Bacteria 5890
34 Ga0439442_029088 3300042002 Bacteria 1152
35 Ga0439448_0032916 3300042005 Bacteria 1651
36 Ga0439449_0014213 3300042007 Bacteria 2993
37 Ga0439455_0003638 3300042012 Bacteria 2972
38 Ga0450903_000983 3300042138 Bacteria 5481
39 Ga0439458_0000204 3300042157 Bacteria 13742
40 Ga0466972_0000495 3300044658 Bacteria 19814
41 Ga0466972_0000971 3300044658 Bacteria 13812
42 Ga0466972_0001897 3300044658 Bacteria 10264
43 Ga0466965_0010536 3300044683 Bacteria 4317
44 Ga0466965_0022592 3300044683 Bacteria 3033
45 Ga0466965_0055239 3300044683 Bacteria 1976
46 Ga0466965_0161305 3300044683 Bacteria 1176
47 Ga0466966_0000145 3300044684 Bacteria 45112
48 Ga0466966_0014381 3300044684 Bacteria 5239
49 Ga0466961_0000775 3300044693 Bacteria 20042
50 Ga0466961_0013752 3300044693 Bacteria 5187
51 Ga0466961_0034419 3300044693 Bacteria 3252
52 Ga0466963_0000450 3300044694 Bacteria 19035
53 Ga0466963_0219803 3300044694 Bacteria 1330
54 Ga0466964_0026283 3300044706 Bacteria 2278
55 Ga0466971_0019818 3300044719 Bacteria 2988
56 Ga0466971_0044579 3300044719 Bacteria 1991
57 Ga0466971_0232010 3300044719 Bacteria 876
58 Ga0466968_0031084 3300044735 Bacteria 2214
59 Ga0466970_0000074 3300044765 Bacteria 40311
60 Ga0466970_0329672 3300044765 Bacteria 864
61 Ga0466957_0000836 3300044842 Bacteria 15738
62 Ga0466960_0020709 3300044901 Bacteria 2917
63 Ga0466959_0002100 3300045049 Bacteria 12603
64 Ga0466959_0102583 3300045049 Bacteria 2047
65 Ga0466958_0007432 3300045836 Bacteria 6028
66 Ga0466967_0002290 3300045976 Bacteria 11819
67 Ga0466967_0087328 3300045976 Bacteria 2827
68 Ga0495617_049288 3300046452 Bacteria 1401
69 Ga0495592_0067377 3300046454 Bacteria 2616
70 Ga0495603_0002468 3300046455 Bacteria 10877
71 Ga0495603_0077251 3300046455 Bacteria 1953
72 Ga0495590_0042935 3300046457 Bacteria 1577
73 Ga0495629_0000979 3300046459 Bacteria 22914
74 Ga0495629_0001794 3300046459 Bacteria 16817
75 Ga0495629_0099750 3300046459 Bacteria 2026
76 Ga0495629_0121776 3300046459 Bacteria 1817
77 Ga0495651_0286266 3300046462 Bacteria 1111
78 Ga0495580_0467472 3300046472 Bacteria 845
79 Ga0495605_0047319 3300046474 Bacteria 2110
80 Ga0495605_0074348 3300046474 Bacteria 1599
81 Ga0495662_0008571 3300046476 Bacteria 5024
82 Ga0495664_0158978 3300046477 Bacteria 1371
83 Ga0495585_0212357 3300046492 Bacteria 980
84 Ga0495594_0000261 3300046499 Bacteria 25780
85 Ga0495594_0215046 3300046499 Bacteria 1096
86 Ga0495594_0411414 3300046499 Bacteria 769
87 Ga0495596_0071339 3300046500 Bacteria 1349
88 Ga0495607_0055659 3300046501 Bacteria 2274
89 Ga0495583_0033443 3300046506 Bacteria 2473
90 Ga0495606_0027622 3300046507 Bacteria 4019
91 Ga0495610_0197226 3300046512 Bacteria 827
92 Ga0495618_0139184 3300046514 Bacteria 1553
93 Ga0495620_0011987 3300046515 Bacteria 4501
94 Ga0495620_0095961 3300046515 Bacteria 1186
95 Ga0495628_0100286 3300046516 Bacteria 2235
96 Ga0495631_0048754 3300046518 Bacteria 1856
97 Ga0495637_0058188 3300046520 Bacteria 1594
98 Ga0495648_0068956 3300046524 Bacteria 2060
99 Ga0495648_0135769 3300046524 Bacteria 1301
100 Ga0495666_0019816 3300046526 Bacteria 3335
101 Ga0495642_0080581 3300046528 Bacteria 1370
102 Ga0495654_0097319 3300046530 Bacteria 1359
103 Ga0495640_0010307 3300046533 Bacteria 7227
104 Ga0495597_0023782 3300046542 Bacteria 2832
105 Ga0495597_0034507 3300046542 Bacteria 2286
106 Ga0495622_0002077 3300046557 Bacteria 9788
107 Ga0495622_0007896 3300046557 Bacteria 4937
108 Ga0495667_0091359 3300046559 Bacteria 1972
109 Ga0495668_0016290 3300046616 Bacteria 4320
110 Ga0495634_0085641 3300046642 Bacteria 2053
111 Ga0495611_0115245 3300046648 Bacteria 1252
112 Ga0495625_0109396 3300046660 Bacteria 1890
113 Ga0495625_0404946 3300046660 Bacteria 851
114 Ga0495661_0112651 3300046665 Bacteria 1514
115 Ga0495588_0073265 3300046674 Bacteria 1783
116 Ga0495657_0024300 3300046675 Bacteria 4319
117 Ga0495646_0214305 3300046680 Bacteria 1044
118 Ga0495613_0000842 3300046689 Bacteria 23673
119 Ga0495613_0091210 3300046689 Bacteria 2206
120 Ga0495613_0280742 3300046689 Bacteria 1156
121 Ga0495671_0175370 3300046692 Bacteria 1041
122 Ga0495649_0086456 3300046694 Bacteria 1673
123 Ga0495649_0097995 3300046694 Bacteria 1559
124 Ga0495589_0011759 3300046794 Bacteria 4540
125 Ga0495589_0017136 3300046794 Bacteria 3720
126 Ga0495589_0073185 3300046794 Bacteria 1672
127 Ga0495660_0020458 3300046810 Bacteria 3793
128 Ga0495581_0166462 3300047315 Bacteria 1289
129 Ga0495581_0201633 3300047315 Bacteria 1164
130 Ga0495604_0030988 3300047317 Bacteria 4243
131 Ga0495636_0003165 3300047318 Bacteria 6380
132 Ga0495636_0045359 3300047318 Bacteria 1832
133 Ga0495636_0062252 3300047318 Bacteria 1579
134 Ga0495636_0080014 3300047318 Bacteria 1406
135 Ga0495636_0207999 3300047318 Bacteria 895
136 Ga0495676_0004554 3300047321 Bacteria 12682
137 Ga0495676_0007813 3300047321 Bacteria 9812
138 Ga0495676_0016804 3300047321 Bacteria 6480
139 Ga0495676_0019906 3300047321 Bacteria 5897
140 Ga0495676_0038072 3300047321 Bacteria 3997
141 Ga0495680_0017017 3300047322 Bacteria 6224
142 Ga0495683_0084972 3300047323 Bacteria 1539
143 Ga0495687_009475 3300047443 Bacteria 5436
144 Ga0495687_024692 3300047443 Bacteria 2853
145 Ga0495675_0258681 3300047444 Bacteria 1043
146 Ga0495685_000608 3300047447 Bacteria 10988
147 Ga0495685_003530 3300047447 Bacteria 4997
148 Ga0495685_004372 3300047447 Bacteria 4560
149 Ga0495685_009962 3300047447 Bacteria 3181
150 Ga0495685_011164 3300047447 Bacteria 3026
151 Ga0495685_031439 3300047447 Bacteria 1824
152 Ga0495686_0112110 3300047472 Bacteria 1634
153 Ga0495593_0041373 3300047673 Bacteria 2477
154 Ga0495614_0000263 3300048089 Bacteria 20482
155 Ga0495614_0104114 3300048089 Bacteria 1243
156 Ga0495626_0011502 3300048091 Bacteria 4680
157 Ga0495678_048792 3300049459 Bacteria 1649
158 Ga0495682_0051791 3300049460 Bacteria 1493
159 Ga0501031_0150234 3300049568 Bacteria 1522
160 Ga0501032_0267550 3300049569 Bacteria 1108
161 Ga0501033_0003654 3300049570 Bacteria 12543
162 Ga0501033_0128667 3300049570 Bacteria 1835
163 Ga0501034_0447739 3300049571 Bacteria 1209
164 Ga0501034_0869499 3300049571 Bacteria 791
165 Ga0501036_0003493 3300049572 Bacteria 12563
166 Ga0501036_0174396 3300049572 Bacteria 1811
167 Ga0501038_0015332 3300049574 Bacteria 6967
168 Ga0501038_0311093 3300049574 Bacteria 1234
169 Ga0501043_0061593 3300049579 Bacteria 2947
170 Ga0501043_0218741 3300049579 Bacteria 1474
171 Ga0501047_0023325 3300049581 Bacteria 5942
172 Ga0501047_0141765 3300049581 Bacteria 2281
173 Ga0501070_0179954 3300049586 Bacteria 1740
174 Ga0501070_0436102 3300049586 Bacteria 1057
175 Ga0501035_0017176 3300049822 Bacteria 6669
176 Ga0501035_0371682 3300049822 Bacteria 1193
177 Ga0501044_0022966 3300049823 Bacteria 6639
178 Ga0501044_0032202 3300049823 Bacteria 5512
179 Ga0501044_0032758 3300049823 Bacteria 5462
180 Ga0501044_0314469 3300049823 Bacteria 1492
181 Ga0466962_0017237 3300061719 Bacteria 3479
182 2946074146 2946072368 Bacteria 8999607
183 2547406747 2547132111 Bacteria 8013147
184 2554259342 2554235005 Bacteria 6457341
185 2585303820 2582581313 Bacteria 10042643
186 2585315502 2582581314 Bacteria 11452267
187 2616695886 2616644814 Bacteria 11555299
188 2643946340 2643221587 Bacteria 7586415
189 2644268289 2643221647 Bacteria 10741251
190 2644389318 2643221670 Bacteria 6497041
191 2644434144 2643221677 Bacteria 7584031
192 2644438457 2643221678 Bacteria 9540101
193 2644629263 2643221714 Bacteria 9015452
194 2784586953 2784132148 Bacteria 8627943
195 2785367398 2784746768 Bacteria 10036182
196 2786668444 2786546132 Bacteria 10419719
197 2808847903 2808606359 Bacteria 9866990
198 2808918653 2808606375 Bacteria 9466072
199 2809230517 2808606448 Bacteria 8656184
200 2812482148 2811994917 Bacteria 7761064
201 2862289391 2862281513 Bacteria 9621493
202 2862514183 2862507626 Bacteria 9425308
203 2862583453 2862574272 Bacteria 10567477
204 2867430224 2867428634 Bacteria 9590268
205 2873157461 2873151551 Bacteria 8625867
206 2912722164 2912715099 Bacteria 9460473
207 2912725884 2912723979 Bacteria 8557534
208 2918502735 2918501144 Bacteria 8668083
209 2919473664 2919468124 Bacteria 9133025
210 2946065802 2946064051 Bacteria 8957905
211 2947231594 2947224130 Bacteria 9938529
212 2954010812 2954002825 Bacteria 9173742
213 2954388370 2954380949 Bacteria 10050426
214 2954674720 2954673503 Bacteria 9685905
215 2954689413 2954682443 Bacteria 9862841
216 2954699185 2954691527 Bacteria 10720516
217 2954703033 2954701450 Bacteria 10834262
218 2954718137 2954711539 Bacteria 10867210
219 2954728105 2954721474 Bacteria 10456478
220 2954733701 2954731030 Bacteria 10243860
221 2954747002 2954740390 Bacteria 10229294
222 2954752585 2954749733 Bacteria 10366972
223 2954766115 2954759201 Bacteria 9358192
224 2997605725 2997600082 Bacteria 9896405
225 3006325116 3006321560 Bacteria 8247479
226 3006495261 3006493962 Bacteria 8825450
227 8008580526 8008574985 Bacteria 7815457
228 8023631604 8023623736 Bacteria 8593882
229 8056835470 8056829672 Bacteria 9045328
230 rootL2_10012045
231 rootH1_10103302
232 Ga0068853_100243797
233 Ga0081455_10354003
234 Ga0075363_100008141
235 Ga0068865_100643659
236 Ga0099826_10049770
237 Ga0105244_10087080
238 Ga0182007_10000452
239 Ga0183367_1010
240 Ga0209758_1005153
241 Ga0207426_1014523
242 Ga0207647_10022572
243 Ga0207709_10175006
244 Ga0207639_10586772
245 Ga0307512_10014964
246 Ga0307512_10039142
247 Ga0307513_10006824
248 Ga0307508_10001243
249 Ga0307508_10015356
250 Ga0307514_10027494
251 Ga0307514_10039857
252 Ga0307514_10110640
253 Ga0307514_10176108
254 Ga0307516_10003084
255 Ga0307510_10051799
256 Ga0395898_0004976
257 Ga0395905_0170693
258 Ga0395901_0143160
259 Ga0439436_0000159
260 Ga0439439_0004141
261 Ga0451853_0855914
262 Ga0439433_0000913
263 Ga0439442_029088
264 Ga0439448_0032916
265 Ga0439449_0014213
266 Ga0439455_0003638
267 Ga0450903_000983
268 Ga0439458_0000204
269 Ga0466972_0000495
270 Ga0466972_0000971
271 Ga0466972_0001897
272 Ga0466965_0010536
273 Ga0466965_0022592
274 Ga0466965_0055239
275 Ga0466965_0161305
276 Ga0466966_0000145
277 Ga0466966_0014381
278 Ga0466961_0000775
279 Ga0466961_0013752
280 Ga0466961_0034419
281 Ga0466963_0000450
282 Ga0466963_0219803
283 Ga0466964_0026283
284 Ga0466971_0019818
285 Ga0466971_0044579
286 Ga0466971_0232010
287 Ga0466968_0031084
288 Ga0466970_0000074
289 Ga0466970_0329672
290 Ga0466957_0000836
291 Ga0466960_0020709
292 Ga0466959_0002100
293 Ga0466959_0102583
294 Ga0466958_0007432
295 Ga0466967_0002290
296 Ga0466967_0087328
297 Ga0495617_049288
298 Ga0495592_0067377
299 Ga0495603_0002468
300 Ga0495603_0077251
301 Ga0495590_0042935
302 Ga0495629_0000979
303 Ga0495629_0001794
304 Ga0495629_0099750
305 Ga0495629_0121776
306 Ga0495651_0286266
307 Ga0495580_0467472
308 Ga0495605_0047319
309 Ga0495605_0074348
310 Ga0495662_0008571
311 Ga0495664_0158978
312 Ga0495585_0212357
313 Ga0495594_0000261
314 Ga0495594_0215046
315 Ga0495594_0411414
316 Ga0495596_0071339
317 Ga0495607_0055659
318 Ga0495583_0033443
319 Ga0495606_0027622
320 Ga0495610_0197226
321 Ga0495618_0139184
322 Ga0495620_0011987
323 Ga0495620_0095961
324 Ga0495628_0100286
325 Ga0495631_0048754
326 Ga0495637_0058188
327 Ga0495648_0068956
328 Ga0495648_0135769
329 Ga0495666_0019816
330 Ga0495642_0080581
331 Ga0495654_0097319
332 Ga0495640_0010307
333 Ga0495597_0023782
334 Ga0495597_0034507
335 Ga0495622_0002077
336 Ga0495622_0007896
337 Ga0495667_0091359
338 Ga0495668_0016290
339 Ga0495634_0085641
340 Ga0495611_0115245
341 Ga0495625_0109396
342 Ga0495625_0404946
343 Ga0495661_0112651
344 Ga0495588_0073265
345 Ga0495657_0024300
346 Ga0495646_0214305
347 Ga0495613_0000842
348 Ga0495613_0091210
349 Ga0495613_0280742
350 Ga0495671_0175370
351 Ga0495649_0086456
352 Ga0495649_0097995
353 Ga0495589_0011759
354 Ga0495589_0017136
355 Ga0495589_0073185
356 Ga0495660_0020458
357 Ga0495581_0166462
358 Ga0495581_0201633
359 Ga0495604_0030988
360 Ga0495636_0003165
361 Ga0495636_0045359
362 Ga0495636_0062252
363 Ga0495636_0080014
364 Ga0495636_0207999
365 Ga0495676_0004554
366 Ga0495676_0007813
367 Ga0495676_0016804
368 Ga0495676_0019906
369 Ga0495676_0038072
370 Ga0495680_0017017
371 Ga0495683_0084972
372 Ga0495687_009475
373 Ga0495687_024692
374 Ga0495675_0258681
375 Ga0495685_000608
376 Ga0495685_003530
377 Ga0495685_004372
378 Ga0495685_009962
379 Ga0495685_011164
380 Ga0495685_031439
381 Ga0495686_0112110
382 Ga0495593_0041373
383 Ga0495614_0000263
384 Ga0495614_0104114
385 Ga0495626_0011502
386 Ga0495678_048792
387 Ga0495682_0051791
388 Ga0501031_0150234
389 Ga0501032_0267550
390 Ga0501033_0003654
391 Ga0501033_0128667
392 Ga0501034_0447739
393 Ga0501034_0869499
394 Ga0501036_0003493
395 Ga0501036_0174396
396 Ga0501038_0015332
397 Ga0501038_0311093
398 Ga0501043_0061593
399 Ga0501043_0218741
400 Ga0501047_0023325
401 Ga0501047_0141765
402 Ga0501070_0179954
403 Ga0501070_0436102
404 Ga0501035_0017176
405 Ga0501035_0371682
406 Ga0501044_0022966
407 Ga0501044_0032202
408 Ga0501044_0032758
409 Ga0501044_0314469
410 Ga0466962_0017237
411 2946074146
412 2547406747
413 2554259342
414 2585303820
415 2585315502
416 2616695886
417 2643946340
418 2644268289
419 2644389318
420 2644434144
421 2644438457
422 2644629263
423 2784586953
424 2785367398
425 2786668444
426 2808847903
427 2808918653
428 2809230517
429 2812482148
430 2862289391
431 2862514183
432 2862583453
433 2867430224
434 2873157461
435 2912722164
436 2912725884
437 2918502735
438 2919473664
439 2946065802
440 2947231594
441 2954010812
442 2954388370
443 2954674720
444 2954689413
445 2954699185
446 2954703033
447 2954718137
448 2954728105
449 2954733701
450 2954747002
451 2954752585
452 2954766115
453 2997605725
454 3006325116
455 3006495261
456 8008580526
457 8023631604
458 8056835470

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12840

HTH_20

Helix-turn-helix domain

30

80

0.97

PF01022

HTH_5

Bacterial regulatory protein, arsR family

32

79

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1u2w-assembly2.cif.gz_C crystal structure of the staphylococcus aureus pi258 cadc 0.9429 9 93
3f72-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.941 9 94
1u2w-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc 0.9407 9 94
1u2w-assembly1.cif.gz_A crystal structure of the staphylococcus aureus pi258 cadc 0.9397 9 94
3f72-assembly2.cif.gz_C crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9325 11 94
ID Description Score Start End Superfamily
1u2wC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9429 9 93 1.10.10.10
3f72B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.941 9 94 1.10.10.10
3f72F00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.928 9 94 1.10.10.10
2h09A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.922 37 79 1.10.10.10
af_Q57824_147_206_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9165 21 78 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A385EKR9-F1-model_v4 Cadmium resistance transcriptional regulatory protein CadC 0.959 17 94 GO:0003677
GO:0003700
GO:0046686
AF-A0A844LMX8-F1-model_v4 deleted 0.9564 11 94
AF-A0A191HTL9-F1-model_v4 HTH arsR-type domain-containing protein 0.9556 6 94 GO:0003700
AF-A0A1B9B236-F1-model_v4 Transcriptional regulator 0.9528 9 94 GO:0003677
GO:0003700
GO:0046686
AF-A0A4Q0VL65-F1-model_v4 ArsR family transcriptional regulator 0.9514 9 93 GO:0003677
GO:0003700
GO:0016491

Map