F341823
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 229 | 140 | 458 | 211 |
Family's Representative Sequence
| Representative Sequence | 3300005548|Ga0070665_100005139|Ga0070665_1000051394 |
| Length | 233 |
| Sequence | MRERPSKWLTFDLYSPTLASGETAMALTRRQKELMDFLSGFIRQHGYSPSYEEIASGLGLASLATVHKHIQALEAKQYLNRNYNHSRSLEVGERFYKEQQVSARATQVESSIPLLGRIAAGAPVEAIANPEVLHFSDFAGSENTFALEVRGDSMIEDHICSGDFVLIEKSSTARNGEIVVALVDGTEATLKRYYLEADGRARLQPANASMSPIYVDPANLQIQGRVLAVMRKY |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 2 | 3300004799 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 3 | 3300004800 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 4 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 5 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 12 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 14 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 15 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 16 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 17 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 18 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 19 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 21 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 22 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 23 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 24 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 25 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 27 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 28 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 30 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 31 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 32 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 33 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 45 | 3300020069 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 46 | 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 47 | 3300020075 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 48 | 3300020076 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) | Metatranscriptome | Rhizosphere |
| 49 | 3300020077 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 50 | 3300020078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 51 | 3300020080 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 52 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 53 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 54 | 3300020610 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 55 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 56 | 3300021377 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 | Metagenome | Unclassified |
| 57 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 58 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 59 | 3300021441 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 | Metagenome | Rhizosphere |
| 60 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 61 | 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 80 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 81 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 82 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 83 | 3300031239 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG | Metagenome | Rhizosphere |
| 84 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 85 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 86 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 87 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 88 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 89 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 90 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 91 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 92 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 93 | 3300035086 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 | Metagenome | Rhizosphere |
| 94 | 3300035117 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 | Metagenome | Rhizosphere |
| 95 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 96 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 97 | 3300035170 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 | Metagenome | Rhizosphere |
| 98 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 99 | 3300035410 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 | Metagenome | Rhizosphere |
| 100 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 101 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 102 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 103 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 104 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 105 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 106 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 107 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 108 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 109 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 110 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 111 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 112 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 113 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 114 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 115 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 116 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 126 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 127 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 128 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 129 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 130 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 131 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 132 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 133 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 134 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 135 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 136 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 137 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 138 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 139 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 140 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 87.34 |
| Metatranscriptomes | 12.66 |
| Isolates | 0 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0 |
| Nodule | 0 |
| Rhizoplane | 1.31 |
| Rhizosphere | 84.72 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 28.82 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070665_100005139 | 3300005548 | Bacteria | 13555 |
| 2 | Ga0058863_10048144 | 3300004799 | Bacteria | 3094 |
| 3 | Ga0058861_11985132 | 3300004800 | Unclassified | 898 |
| 4 | Ga0058861_12016294 | 3300004800 | Bacteria | 1521 |
| 5 | Ga0070680_100585433 | 3300005336 | Bacteria | 957 |
| 6 | Ga0070682_100675810 | 3300005337 | Bacteria | 825 |
| 7 | Ga0070660_100064960 | 3300005339 | Bacteria | 2840 |
| 8 | Ga0070660_101174284 | 3300005339 | Unclassified | 650 |
| 9 | Ga0070659_100037286 | 3300005366 | Bacteria | 3789 |
| 10 | Ga0070714_100043888 | 3300005435 | Bacteria | 3784 |
| 11 | Ga0070714_100152498 | 3300005435 | Bacteria | 2084 |
| 12 | Ga0070713_100001219 | 3300005436 | Bacteria | 16441 |
| 13 | Ga0070713_100720917 | 3300005436 | Bacteria | 953 |
| 14 | Ga0070713_100867198 | 3300005436 | Unclassified | 867 |
| 15 | Ga0070711_100027822 | 3300005439 | Bacteria | 3715 |
| 16 | Ga0070711_100276971 | 3300005439 | Bacteria | 1326 |
| 17 | Ga0070700_100384959 | 3300005441 | Bacteria | 1050 |
| 18 | Ga0070662_100188667 | 3300005457 | Unclassified | 1629 |
| 19 | Ga0070681_10007203 | 3300005458 | Bacteria | 10844 |
| 20 | Ga0070681_10351289 | 3300005458 | Unclassified | 1385 |
| 21 | Ga0070681_10667221 | 3300005458 | Bacteria | 955 |
| 22 | Ga0070679_100021143 | 3300005530 | Bacteria | 6348 |
| 23 | Ga0070679_100430938 | 3300005530 | Unclassified | 1264 |
| 24 | Ga0070684_100202363 | 3300005535 | Unclassified | 1809 |
| 25 | Ga0070697_100220037 | 3300005536 | Bacteria | 1618 |
| 26 | Ga0070665_100192826 | 3300005548 | Bacteria | 2038 |
| 27 | Ga0070704_100431362 | 3300005549 | Bacteria | 1131 |
| 28 | Ga0068855_100010118 | 3300005563 | Bacteria | 11367 |
| 29 | Ga0070664_100047382 | 3300005564 | Bacteria | 3631 |
| 30 | Ga0068856_100010933 | 3300005614 | Bacteria | 8808 |
| 31 | Ga0068856_100028561 | 3300005614 | Bacteria | 5447 |
| 32 | Ga0068856_100107235 | 3300005614 | Bacteria | 2789 |
| 33 | Ga0068859_100093362 | 3300005617 | Bacteria | 3061 |
| 34 | Ga0068863_101332075 | 3300005841 | Unclassified | 725 |
| 35 | Ga0068862_100115038 | 3300005844 | Bacteria | 2365 |
| 36 | Ga0081455_10031396 | 3300005937 | Bacteria | 4807 |
| 37 | Ga0070717_10001155 | 3300006028 | Bacteria | 17838 |
| 38 | Ga0070717_10098220 | 3300006028 | Bacteria | 2482 |
| 39 | Ga0070717_11018969 | 3300006028 | Unclassified | 754 |
| 40 | Ga0070716_100038451 | 3300006173 | Bacteria | 2650 |
| 41 | Ga0070712_100268866 | 3300006175 | Unclassified | 1369 |
| 42 | Ga0097621_100128168 | 3300006237 | Bacteria | 2157 |
| 43 | Ga0075430_100013643 | 3300006846 | Bacteria | 6927 |
| 44 | Ga0075433_10865665 | 3300006852 | Bacteria | 789 |
| 45 | Ga0075434_100457352 | 3300006871 | Unclassified | 1298 |
| 46 | Ga0075436_100295830 | 3300006914 | Bacteria | 1159 |
| 47 | Ga0097620_100093363 | 3300006931 | Bacteria | 3061 |
| 48 | Ga0105241_10024460 | 3300009174 | Bacteria | 4484 |
| 49 | Ga0105248_10146546 | 3300009177 | Bacteria | 2664 |
| 50 | Ga0105237_10790984 | 3300009545 | Bacteria | 955 |
| 51 | Ga0157373_10021961 | 3300013100 | Bacteria | 4631 |
| 52 | Ga0157373_10080882 | 3300013100 | Unclassified | 2291 |
| 53 | Ga0157370_10030679 | 3300013104 | Bacteria | 5266 |
| 54 | Ga0157370_10253133 | 3300013104 | Bacteria | 1629 |
| 55 | Ga0157370_10424872 | 3300013104 | Unclassified | 1222 |
| 56 | Ga0157370_10447027 | 3300013104 | Bacteria | 1188 |
| 57 | Ga0157369_10003036 | 3300013105 | Bacteria | 20028 |
| 58 | Ga0157374_10002395 | 3300013296 | Bacteria | 15806 |
| 59 | Ga0157374_10003800 | 3300013296 | Bacteria | 12699 |
| 60 | Ga0157372_10822422 | 3300013307 | Bacteria | 1079 |
| 61 | Ga0163163_10799567 | 3300014325 | Unclassified | 1006 |
| 62 | Ga0157376_10517762 | 3300014969 | Unclassified | 1175 |
| 63 | Ga0157376_10771068 | 3300014969 | Unclassified | 972 |
| 64 | Ga0182005_1099196 | 3300015265 | Bacteria | 815 |
| 65 | Ga0197907_10149237 | 3300020069 | Bacteria | 1382 |
| 66 | Ga0197907_10524916 | 3300020069 | Unclassified | 1492 |
| 67 | Ga0197907_11309931 | 3300020069 | Bacteria | 1109 |
| 68 | Ga0206356_10789492 | 3300020070 | Bacteria | 1163 |
| 69 | Ga0206349_1064878 | 3300020075 | Unclassified | 2298 |
| 70 | Ga0206349_1072997 | 3300020075 | Bacteria | 994 |
| 71 | Ga0206349_1253745 | 3300020075 | Bacteria | 1583 |
| 72 | Ga0206355_1083111 | 3300020076 | Unclassified | 1053 |
| 73 | Ga0206355_1297159 | 3300020076 | Unclassified | 2954 |
| 74 | Ga0206355_1640137 | 3300020076 | Bacteria | 2103 |
| 75 | Ga0206351_10258895 | 3300020077 | Bacteria | 837 |
| 76 | Ga0206351_10471371 | 3300020077 | Bacteria | 1402 |
| 77 | Ga0206352_10232596 | 3300020078 | Bacteria | 1107 |
| 78 | Ga0206350_11001370 | 3300020080 | Unclassified | 1543 |
| 79 | Ga0206350_11174276 | 3300020080 | Unclassified | 1385 |
| 80 | Ga0206350_11262529 | 3300020080 | Bacteria | 1229 |
| 81 | Ga0206354_10365076 | 3300020081 | Unclassified | 2058 |
| 82 | Ga0206354_11429476 | 3300020081 | Bacteria | 1018 |
| 83 | Ga0206353_10468440 | 3300020082 | Unclassified | 1122 |
| 84 | Ga0206353_11626971 | 3300020082 | Unclassified | 2184 |
| 85 | Ga0206353_11895616 | 3300020082 | Bacteria | 1190 |
| 86 | Ga0154015_1485462 | 3300020610 | Unclassified | 1225 |
| 87 | Ga0154015_1652208 | 3300020610 | Bacteria | 1188 |
| 88 | Ga0213872_10000164 | 3300021361 | Bacteria | 60317 |
| 89 | Ga0213874_10219368 | 3300021377 | Bacteria | 691 |
| 90 | Ga0213876_10033025 | 3300021384 | Unclassified | 2728 |
| 91 | Ga0213876_10049099 | 3300021384 | Bacteria | 2229 |
| 92 | Ga0213876_10053962 | 3300021384 | Unclassified | 2123 |
| 93 | Ga0213875_10000006 | 3300021388 | Bacteria | 579005 |
| 94 | Ga0213875_10000313 | 3300021388 | Bacteria | 46302 |
| 95 | Ga0213875_10002883 | 3300021388 | Bacteria | 10054 |
| 96 | Ga0213875_10006253 | 3300021388 | Bacteria | 6267 |
| 97 | Ga0213875_10043266 | 3300021388 | Unclassified | 2115 |
| 98 | Ga0213875_10088816 | 3300021388 | Bacteria | 1441 |
| 99 | Ga0213875_10136475 | 3300021388 | Bacteria | 1147 |
| 100 | Ga0213871_10111016 | 3300021441 | Unclassified | 810 |
| 101 | Ga0224712_10016493 | 3300022467 | Unclassified | 2429 |
| 102 | Ga0224712_10052672 | 3300022467 | Unclassified | 1590 |
| 103 | Ga0224712_10053196 | 3300022467 | Unclassified | 1585 |
| 104 | Ga0207699_10170172 | 3300025906 | Bacteria | 1457 |
| 105 | Ga0207707_10847523 | 3300025912 | Bacteria | 759 |
| 106 | Ga0207693_10182816 | 3300025915 | Unclassified | 1650 |
| 107 | Ga0207663_10187903 | 3300025916 | Bacteria | 1481 |
| 108 | Ga0207660_10985317 | 3300025917 | Bacteria | 688 |
| 109 | Ga0207657_10068147 | 3300025919 | Bacteria | 3024 |
| 110 | Ga0207657_10087448 | 3300025919 | Bacteria | 2607 |
| 111 | Ga0207652_10208935 | 3300025921 | Bacteria | 1757 |
| 112 | Ga0207700_10007131 | 3300025928 | Bacteria | 6811 |
| 113 | Ga0207700_10801630 | 3300025928 | Bacteria | 842 |
| 114 | Ga0207664_10037318 | 3300025929 | Bacteria | 3760 |
| 115 | Ga0207690_10182676 | 3300025932 | Bacteria | 1580 |
| 116 | Ga0207706_10216416 | 3300025933 | Unclassified | 1678 |
| 117 | Ga0207665_10029697 | 3300025939 | Bacteria | 3613 |
| 118 | Ga0207661_10080918 | 3300025944 | Bacteria | 2682 |
| 119 | Ga0207702_10028496 | 3300026078 | Bacteria | 4642 |
| 120 | Ga0207702_10102596 | 3300026078 | Bacteria | 2528 |
| 121 | Ga0207702_10727454 | 3300026078 | Bacteria | 979 |
| 122 | Ga0207702_10922383 | 3300026078 | Bacteria | 866 |
| 123 | Ga0207683_10182171 | 3300026121 | Bacteria | 1905 |
| 124 | Ga0207698_11012551 | 3300026142 | Unclassified | 842 |
| 125 | Ga0268266_10107506 | 3300028379 | Bacteria | 2467 |
| 126 | Ga0268265_10165285 | 3300028380 | Bacteria | 1885 |
| 127 | Ga0265318_10097815 | 3300028577 | Bacteria | 1080 |
| 128 | Ga0265338_10012494 | 3300028800 | Bacteria | 9677 |
| 129 | Ga0265330_10089955 | 3300031235 | Bacteria | 1318 |
| 130 | Ga0265330_10255818 | 3300031235 | Bacteria | 738 |
| 131 | Ga0265332_10015348 | 3300031238 | Unclassified | 3381 |
| 132 | Ga0265328_10019741 | 3300031239 | Bacteria | 2586 |
| 133 | Ga0265320_10002033 | 3300031240 | Bacteria | 14258 |
| 134 | Ga0265325_10042060 | 3300031241 | Bacteria | 2391 |
| 135 | Ga0265325_10089535 | 3300031241 | Bacteria | 1519 |
| 136 | Ga0265329_10059039 | 3300031242 | Bacteria | 1214 |
| 137 | Ga0265340_10057420 | 3300031247 | Bacteria | 1870 |
| 138 | Ga0265339_10018344 | 3300031249 | Bacteria | 4126 |
| 139 | Ga0265331_10009365 | 3300031250 | Bacteria | 5501 |
| 140 | Ga0265316_10009247 | 3300031344 | Bacteria | 9073 |
| 141 | Ga0265316_10088022 | 3300031344 | Bacteria | 2372 |
| 142 | Ga0265342_10083553 | 3300031712 | Bacteria | 1840 |
| 143 | Ga0307406_10635279 | 3300031901 | Unclassified | 884 |
| 144 | Ga0373934_0119954 | 3300035086 | Bacteria | 1069 |
| 145 | Ga0373934_0120771 | 3300035086 | Bacteria | 1066 |
| 146 | Ga0373953_0004162 | 3300035117 | Bacteria | 4589 |
| 147 | Ga0373953_0199408 | 3300035117 | Unclassified | 865 |
| 148 | Ga0373954_0052357 | 3300035118 | Unclassified | 1918 |
| 149 | Ga0373954_0067569 | 3300035118 | Unclassified | 1694 |
| 150 | Ga0373956_0041754 | 3300035119 | Unclassified | 2037 |
| 151 | Ga0373943_0085968 | 3300035170 | Bacteria | 1621 |
| 152 | Ga0373955_0113983 | 3300035172 | Unclassified | 1565 |
| 153 | Ga0373924_0228181 | 3300035410 | Bacteria | 823 |
| 154 | Ga0373935_0003895 | 3300035692 | Bacteria | 8706 |
| 155 | Ga0373935_0109195 | 3300035692 | Unclassified | 1834 |
| 156 | Ga0373935_0304428 | 3300035692 | Bacteria | 1127 |
| 157 | Ga0373927_0013440 | 3300035695 | Bacteria | 5441 |
| 158 | Ga0373927_0054848 | 3300035695 | Bacteria | 2578 |
| 159 | Ga0373927_0091433 | 3300035695 | Unclassified | 1976 |
| 160 | Ga0373933_0079239 | 3300035724 | Bacteria | 2011 |
| 161 | Ga0373947_0007510 | 3300035725 | Bacteria | 6306 |
| 162 | Ga0373947_0128765 | 3300035725 | Unclassified | 1614 |
| 163 | Ga0373947_0204788 | 3300035725 | Bacteria | 1292 |
| 164 | Ga0373937_0107523 | 3300036401 | Unclassified | 2593 |
| 165 | Ga0373925_0013437 | 3300037068 | Bacteria | 5926 |
| 166 | Ga0373925_0180380 | 3300037068 | Unclassified | 1671 |
| 167 | Ga0395900_0047645 | 3300037418 | Bacteria | 4414 |
| 168 | Ga0395900_0980568 | 3300037418 | Bacteria | 766 |
| 169 | Ga0395898_0297356 | 3300037466 | Unclassified | 1540 |
| 170 | Ga0436364_0150598 | 3300037853 | Bacteria | 7723 |
| 171 | Ga0436364_0160844 | 3300037853 | Bacteria | 1715 |
| 172 | Ga0436364_0197037 | 3300037853 | Unclassified | 1732 |
| 173 | Ga0436364_0310507 | 3300037853 | Bacteria | 3801 |
| 174 | Ga0436364_0328729 | 3300037853 | Unclassified | 2204 |
| 175 | Ga0436364_0478514 | 3300037853 | Bacteria | 578677 |
| 176 | Ga0436364_0716408 | 3300037853 | Bacteria | 6814 |
| 177 | Ga0436364_0785381 | 3300037853 | Unclassified | 1246 |
| 178 | Ga0436364_0794765 | 3300037853 | Bacteria | 162685 |
| 179 | Ga0436364_0817047 | 3300037853 | Unclassified | 2027 |
| 180 | Ga0436364_1101467 | 3300037853 | Bacteria | 4044 |
| 181 | Ga0436364_1151688 | 3300037853 | Unclassified | 4219 |
| 182 | Ga0436364_1183210 | 3300037853 | Bacteria | 1593 |
| 183 | Ga0436364_1253422 | 3300037853 | Bacteria | 3684 |
| 184 | Ga0436364_1465261 | 3300037853 | Bacteria | 3903 |
| 185 | Ga0436364_1529626 | 3300037853 | Bacteria | 5832 |
| 186 | Ga0395901_0285795 | 3300038443 | Unclassified | 1713 |
| 187 | Ga0436365_0458630 | 3300039437 | Bacteria | 2724 |
| 188 | Ga0436365_1436889 | 3300039437 | Bacteria | 886 |
| 189 | Ga0436365_1478719 | 3300039437 | Unclassified | 1232 |
| 190 | Ga0436365_1679080 | 3300039437 | Bacteria | 3928 |
| 191 | Ga0436360_0252808 | 3300039438 | Bacteria | 14609 |
| 192 | Ga0436361_0167314 | 3300039447 | Bacteria | 59578 |
| 193 | Ga0436363_0117565 | 3300039450 | Unclassified | 1501 |
| 194 | Ga0436362_0760004 | 3300039453 | Bacteria | 890 |
| 195 | Ga0436362_0891570 | 3300039453 | Bacteria | 2100 |
| 196 | Ga0436362_0921956 | 3300039453 | Bacteria | 3985 |
| 197 | Ga0466963_0747060 | 3300044694 | Bacteria | 690 |
| 198 | Ga0495651_0175525 | 3300046462 | Bacteria | 1522 |
| 199 | Ga0495580_0001458 | 3300046472 | Bacteria | 20739 |
| 200 | Ga0495580_0118106 | 3300046472 | Bacteria | 1841 |
| 201 | Ga0495580_0511721 | 3300046472 | Unclassified | 801 |
| 202 | Ga0495608_0184096 | 3300046511 | Unclassified | 1321 |
| 203 | Ga0495630_0169575 | 3300046517 | Unclassified | 1663 |
| 204 | Ga0495667_0092179 | 3300046559 | Unclassified | 1962 |
| 205 | Ga0495635_0237829 | 3300046663 | Bacteria | 1229 |
| 206 | Ga0495672_0194454 | 3300047320 | Bacteria | 1018 |
| 207 | Ga0495684_0069765 | 3300047471 | Unclassified | 2672 |
| 208 | Ga0495602_0304367 | 3300048088 | Bacteria | 1165 |
| 209 | Ga0496104_0356315 | 3300048907 | Unclassified | 1376 |
| 210 | Ga0496115_0206479 | 3300048918 | Bacteria | 1623 |
| 211 | Ga0496115_0710718 | 3300048918 | Bacteria | 789 |
| 212 | Ga0501034_0059258 | 3300049571 | Bacteria | 3846 |
| 213 | Ga0501038_0413390 | 3300049574 | Unclassified | 1042 |
| 214 | Ga0501039_0857323 | 3300049575 | Unclassified | 708 |
| 215 | Ga0501043_0095237 | 3300049579 | Bacteria | 2340 |
| 216 | Ga0501047_0014378 | 3300049581 | Bacteria | 7526 |
| 217 | Ga0501070_0015059 | 3300049586 | Bacteria | 6509 |
| 218 | Ga0501070_0030934 | 3300049586 | Bacteria | 4484 |
| 219 | Ga0501073_0168175 | 3300049589 | Bacteria | 1518 |
| 220 | Ga0501074_0354501 | 3300049590 | Bacteria | 1041 |
| 221 | Ga0501035_0030140 | 3300049822 | Bacteria | 4946 |
| 222 | Ga0501035_0779430 | 3300049822 | Unclassified | 765 |
| 223 | Ga0501044_0001227 | 3300049823 | Bacteria | 30468 |
| 224 | Ga0501044_0007391 | 3300049823 | Bacteria | 12084 |
| 225 | Ga0501044_0127245 | 3300049823 | Bacteria | 2544 |
| 226 | nmdc:mga0qj67_17013_c1 | 3300050509 | Bacteria | 5523 |
| 227 | nmdc:mga0n895_194726_c1 | 3300050512 | Bacteria | 2058 |
| 228 | nmdc:mga08x19_46712_c1 | 3300050514 | Bacteria | 2770 |
| 229 | nmdc:mga0a205_366273_c1 | 3300050515 | Bacteria | 1307 |
| 230 | Ga0070665_100005139 | |||
| 231 | Ga0058863_10048144 | |||
| 232 | Ga0058861_11985132 | |||
| 233 | Ga0058861_12016294 | |||
| 234 | Ga0070680_100585433 | |||
| 235 | Ga0070682_100675810 | |||
| 236 | Ga0070660_100064960 | |||
| 237 | Ga0070660_101174284 | |||
| 238 | Ga0070659_100037286 | |||
| 239 | Ga0070714_100043888 | |||
| 240 | Ga0070714_100152498 | |||
| 241 | Ga0070713_100001219 | |||
| 242 | Ga0070713_100720917 | |||
| 243 | Ga0070713_100867198 | |||
| 244 | Ga0070711_100027822 | |||
| 245 | Ga0070711_100276971 | |||
| 246 | Ga0070700_100384959 | |||
| 247 | Ga0070662_100188667 | |||
| 248 | Ga0070681_10007203 | |||
| 249 | Ga0070681_10351289 | |||
| 250 | Ga0070681_10667221 | |||
| 251 | Ga0070679_100021143 | |||
| 252 | Ga0070679_100430938 | |||
| 253 | Ga0070684_100202363 | |||
| 254 | Ga0070697_100220037 | |||
| 255 | Ga0070665_100192826 | |||
| 256 | Ga0070704_100431362 | |||
| 257 | Ga0068855_100010118 | |||
| 258 | Ga0070664_100047382 | |||
| 259 | Ga0068856_100010933 | |||
| 260 | Ga0068856_100028561 | |||
| 261 | Ga0068856_100107235 | |||
| 262 | Ga0068859_100093362 | |||
| 263 | Ga0068863_101332075 | |||
| 264 | Ga0068862_100115038 | |||
| 265 | Ga0081455_10031396 | |||
| 266 | Ga0070717_10001155 | |||
| 267 | Ga0070717_10098220 | |||
| 268 | Ga0070717_11018969 | |||
| 269 | Ga0070716_100038451 | |||
| 270 | Ga0070712_100268866 | |||
| 271 | Ga0097621_100128168 | |||
| 272 | Ga0075430_100013643 | |||
| 273 | Ga0075433_10865665 | |||
| 274 | Ga0075434_100457352 | |||
| 275 | Ga0075436_100295830 | |||
| 276 | Ga0097620_100093363 | |||
| 277 | Ga0105241_10024460 | |||
| 278 | Ga0105248_10146546 | |||
| 279 | Ga0105237_10790984 | |||
| 280 | Ga0157373_10021961 | |||
| 281 | Ga0157373_10080882 | |||
| 282 | Ga0157370_10030679 | |||
| 283 | Ga0157370_10253133 | |||
| 284 | Ga0157370_10424872 | |||
| 285 | Ga0157370_10447027 | |||
| 286 | Ga0157369_10003036 | |||
| 287 | Ga0157374_10002395 | |||
| 288 | Ga0157374_10003800 | |||
| 289 | Ga0157372_10822422 | |||
| 290 | Ga0163163_10799567 | |||
| 291 | Ga0157376_10517762 | |||
| 292 | Ga0157376_10771068 | |||
| 293 | Ga0182005_1099196 | |||
| 294 | Ga0197907_10149237 | |||
| 295 | Ga0197907_10524916 | |||
| 296 | Ga0197907_11309931 | |||
| 297 | Ga0206356_10789492 | |||
| 298 | Ga0206349_1064878 | |||
| 299 | Ga0206349_1072997 | |||
| 300 | Ga0206349_1253745 | |||
| 301 | Ga0206355_1083111 | |||
| 302 | Ga0206355_1297159 | |||
| 303 | Ga0206355_1640137 | |||
| 304 | Ga0206351_10258895 | |||
| 305 | Ga0206351_10471371 | |||
| 306 | Ga0206352_10232596 | |||
| 307 | Ga0206350_11001370 | |||
| 308 | Ga0206350_11174276 | |||
| 309 | Ga0206350_11262529 | |||
| 310 | Ga0206354_10365076 | |||
| 311 | Ga0206354_11429476 | |||
| 312 | Ga0206353_10468440 | |||
| 313 | Ga0206353_11626971 | |||
| 314 | Ga0206353_11895616 | |||
| 315 | Ga0154015_1485462 | |||
| 316 | Ga0154015_1652208 | |||
| 317 | Ga0213872_10000164 | |||
| 318 | Ga0213874_10219368 | |||
| 319 | Ga0213876_10033025 | |||
| 320 | Ga0213876_10049099 | |||
| 321 | Ga0213876_10053962 | |||
| 322 | Ga0213875_10000006 | |||
| 323 | Ga0213875_10000313 | |||
| 324 | Ga0213875_10002883 | |||
| 325 | Ga0213875_10006253 | |||
| 326 | Ga0213875_10043266 | |||
| 327 | Ga0213875_10088816 | |||
| 328 | Ga0213875_10136475 | |||
| 329 | Ga0213871_10111016 | |||
| 330 | Ga0224712_10016493 | |||
| 331 | Ga0224712_10052672 | |||
| 332 | Ga0224712_10053196 | |||
| 333 | Ga0207699_10170172 | |||
| 334 | Ga0207707_10847523 | |||
| 335 | Ga0207693_10182816 | |||
| 336 | Ga0207663_10187903 | |||
| 337 | Ga0207660_10985317 | |||
| 338 | Ga0207657_10068147 | |||
| 339 | Ga0207657_10087448 | |||
| 340 | Ga0207652_10208935 | |||
| 341 | Ga0207700_10007131 | |||
| 342 | Ga0207700_10801630 | |||
| 343 | Ga0207664_10037318 | |||
| 344 | Ga0207690_10182676 | |||
| 345 | Ga0207706_10216416 | |||
| 346 | Ga0207665_10029697 | |||
| 347 | Ga0207661_10080918 | |||
| 348 | Ga0207702_10028496 | |||
| 349 | Ga0207702_10102596 | |||
| 350 | Ga0207702_10727454 | |||
| 351 | Ga0207702_10922383 | |||
| 352 | Ga0207683_10182171 | |||
| 353 | Ga0207698_11012551 | |||
| 354 | Ga0268266_10107506 | |||
| 355 | Ga0268265_10165285 | |||
| 356 | Ga0265318_10097815 | |||
| 357 | Ga0265338_10012494 | |||
| 358 | Ga0265330_10089955 | |||
| 359 | Ga0265330_10255818 | |||
| 360 | Ga0265332_10015348 | |||
| 361 | Ga0265328_10019741 | |||
| 362 | Ga0265320_10002033 | |||
| 363 | Ga0265325_10042060 | |||
| 364 | Ga0265325_10089535 | |||
| 365 | Ga0265329_10059039 | |||
| 366 | Ga0265340_10057420 | |||
| 367 | Ga0265339_10018344 | |||
| 368 | Ga0265331_10009365 | |||
| 369 | Ga0265316_10009247 | |||
| 370 | Ga0265316_10088022 | |||
| 371 | Ga0265342_10083553 | |||
| 372 | Ga0307406_10635279 | |||
| 373 | Ga0373934_0119954 | |||
| 374 | Ga0373934_0120771 | |||
| 375 | Ga0373953_0004162 | |||
| 376 | Ga0373953_0199408 | |||
| 377 | Ga0373954_0052357 | |||
| 378 | Ga0373954_0067569 | |||
| 379 | Ga0373956_0041754 | |||
| 380 | Ga0373943_0085968 | |||
| 381 | Ga0373955_0113983 | |||
| 382 | Ga0373924_0228181 | |||
| 383 | Ga0373935_0003895 | |||
| 384 | Ga0373935_0109195 | |||
| 385 | Ga0373935_0304428 | |||
| 386 | Ga0373927_0013440 | |||
| 387 | Ga0373927_0054848 | |||
| 388 | Ga0373927_0091433 | |||
| 389 | Ga0373933_0079239 | |||
| 390 | Ga0373947_0007510 | |||
| 391 | Ga0373947_0128765 | |||
| 392 | Ga0373947_0204788 | |||
| 393 | Ga0373937_0107523 | |||
| 394 | Ga0373925_0013437 | |||
| 395 | Ga0373925_0180380 | |||
| 396 | Ga0395900_0047645 | |||
| 397 | Ga0395900_0980568 | |||
| 398 | Ga0395898_0297356 | |||
| 399 | Ga0436364_0150598 | |||
| 400 | Ga0436364_0160844 | |||
| 401 | Ga0436364_0197037 | |||
| 402 | Ga0436364_0310507 | |||
| 403 | Ga0436364_0328729 | |||
| 404 | Ga0436364_0478514 | |||
| 405 | Ga0436364_0716408 | |||
| 406 | Ga0436364_0785381 | |||
| 407 | Ga0436364_0794765 | |||
| 408 | Ga0436364_0817047 | |||
| 409 | Ga0436364_1101467 | |||
| 410 | Ga0436364_1151688 | |||
| 411 | Ga0436364_1183210 | |||
| 412 | Ga0436364_1253422 | |||
| 413 | Ga0436364_1465261 | |||
| 414 | Ga0436364_1529626 | |||
| 415 | Ga0395901_0285795 | |||
| 416 | Ga0436365_0458630 | |||
| 417 | Ga0436365_1436889 | |||
| 418 | Ga0436365_1478719 | |||
| 419 | Ga0436365_1679080 | |||
| 420 | Ga0436360_0252808 | |||
| 421 | Ga0436361_0167314 | |||
| 422 | Ga0436363_0117565 | |||
| 423 | Ga0436362_0760004 | |||
| 424 | Ga0436362_0891570 | |||
| 425 | Ga0436362_0921956 | |||
| 426 | Ga0466963_0747060 | |||
| 427 | Ga0495651_0175525 | |||
| 428 | Ga0495580_0001458 | |||
| 429 | Ga0495580_0118106 | |||
| 430 | Ga0495580_0511721 | |||
| 431 | Ga0495608_0184096 | |||
| 432 | Ga0495630_0169575 | |||
| 433 | Ga0495667_0092179 | |||
| 434 | Ga0495635_0237829 | |||
| 435 | Ga0495672_0194454 | |||
| 436 | Ga0495684_0069765 | |||
| 437 | Ga0495602_0304367 | |||
| 438 | Ga0496104_0356315 | |||
| 439 | Ga0496115_0206479 | |||
| 440 | Ga0496115_0710718 | |||
| 441 | Ga0501034_0059258 | |||
| 442 | Ga0501038_0413390 | |||
| 443 | Ga0501039_0857323 | |||
| 444 | Ga0501043_0095237 | |||
| 445 | Ga0501047_0014378 | |||
| 446 | Ga0501070_0015059 | |||
| 447 | Ga0501070_0030934 | |||
| 448 | Ga0501073_0168175 | |||
| 449 | Ga0501074_0354501 | |||
| 450 | Ga0501035_0030140 | |||
| 451 | Ga0501035_0779430 | |||
| 452 | Ga0501044_0001227 | |||
| 453 | Ga0501044_0007391 | |||
| 454 | Ga0501044_0127245 | |||
| 455 | nmdc:mga0qj67_17013_c1 | |||
| 456 | nmdc:mga0n895_194726_c1 | |||
| 457 | nmdc:mga08x19_46712_c1 | |||
| 458 | nmdc:mga0a205_366273_c1 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8gmt-assembly1.cif.gz_A | structure of umud in complex with reca filament | 0.929 | 117 | 205 |
| 1leb-assembly1.cif.gz_A | solution structure of the lexa repressor dna binding determined by 1h nmr spectroscopy | 0.9205 | 2 | 67 |
| 1lea-assembly1.cif.gz_A | solution structure of the lexa repressor dna binding determined by 1h nmr spectroscopy | 0.9155 | 2 | 69 |
| 1jhf-assembly1.cif.gz_B | lexa g85d mutant | 0.908 | 119 | 207 |
| 1ay9-assembly1.cif.gz_A | wild-type umud' from e. coli | 0.8811 | 107 | 207 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3jspB01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9396 | 1 | 67 | 1.10.10.10 |
| 3k2zA01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9367 | 2 | 67 | 1.10.10.10 |
| 1jhhA02 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9276 | 1 | 67 | 1.10.10.10 |
| 1umuA00 | Mainly Beta;Ribbon;Umud Fragment, subunit A;Umud Fragment, subunit A | 0.9264 | 116 | 205 | 2.10.109.10 |
| 3k2zA01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9225 | 2 | 67 | 1.10.10.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A1V5TXM9-F1-model_v4 | LexA repressor (EC 3.4.21.88) | 0.9961 | 121 | 207 |
GO:0003677
GO:0004252 |
| AF-A0A2V8GGA7-F1-model_v4 | Peptidase S24/S26A/S26B/S26C domain-containing protein | 0.9801 | 119 | 207 |
GO:0003677
GO:0006281 GO:0006355 GO:0009432 GO:0016787 |
| AF-K2DQG6-F1-model_v4 | LexA repressor (EC 3.4.21.88) | 0.9785 | 118 | 207 |
GO:0003677
GO:0004252 GO:0006281 GO:0006355 GO:0009432 |
| AF-A0A2M7YA40-F1-model_v4 | Repressor LexA | 0.9749 | 118 | 207 |
GO:0003677
GO:0006281 GO:0006355 GO:0009432 GO:0016787 |
| AF-A0A1V5TXM9-F1-model_v4 | LexA repressor (EC 3.4.21.88) | 0.9738 | 121 | 207 |
GO:0003677
GO:0004252 |