F337268

General Info

Members Datasets Scaffolds Average Seq Length
224 181 205 222

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2852632344|2852635115
Length 255
Sequence ILVDDHAVMRAGFRMILESQDDIAVVAEAANGSEAVAAASAHSPDVICMDVQMPGMDGITATRELVATGSEAAVLIVTTFDRDDYLFEALSAGASGFLLKNAGPEELVHAVRVAAAGDALLAPEVTRRVIRRFAGGGGGEGAGTASHPAPPAAPEDDPRSGGLIAPDRPRQGGISPPGSTAAAPGAAPAAPTVDLTDRETEVLRLVAQALSNAEIAERLFIGEATVKTHVSNVLQKLGARDRVAAVVYAHRHGLA

Samples

Sample ID Description Type Environment
1 2643221553 Microbacterium sp. Root553 Isolate Unclassified
2 2643221566 Microbacterium sp. Root166 Isolate Unclassified
3 2643221575 Microbacterium sp. Root61 Isolate Unclassified
4 2643221597 Microbacterium sp. Root180 Isolate Unclassified
5 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
6 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
7 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
8 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
9 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
10 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
11 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
12 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
13 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
14 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
15 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
16 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
17 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
18 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
19 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
20 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
25 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
38 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
39 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
40 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
41 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
42 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
56 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
59 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
60 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
65 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
66 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
86 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
87 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
88 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
89 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
90 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
91 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
92 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
93 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
94 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
95 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
96 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
99 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
100 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
103 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
104 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
105 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
106 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
107 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
108 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
109 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
110 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
111 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
112 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
113 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
114 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
115 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
116 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
117 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
118 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
119 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
120 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
121 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
122 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
123 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
124 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
125 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
126 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
127 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
128 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
129 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
130 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
131 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
132 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
133 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
136 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
137 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
138 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
139 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
140 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
141 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
142 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
143 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
146 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
147 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
148 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
149 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
150 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
151 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
152 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
153 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
154 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
155 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
156 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
157 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
158 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
159 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
160 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
161 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
162 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
163 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
164 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
165 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
166 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
167 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
168 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
169 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
170 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
171 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
172 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
173 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
174 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
175 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
176 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
177 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
178 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
179 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
180 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
181 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.62
Metatranscriptomes 0.89
Isolates 8.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.79
Nodule 0
Rhizoplane 4.46
Rhizosphere 70.09
Stem 0
Stem Tuber 0
Unclassified 23.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1035822 3300003578 Bacteria 35489
2 Ga0006562J51391_1035824 3300003578 Bacteria 14270
3 Ga0068869_100197675 3300005334 Bacteria 1584
4 Ga0070680_100094934 3300005336 Bacteria 2472
5 Ga0068868_100072493 3300005338 Bacteria 2748
6 Ga0070661_100484625 3300005344 Bacteria 988
7 Ga0070714_100062446 3300005435 Bacteria 3202
8 Ga0070714_100130630 3300005435 Bacteria 2244
9 Ga0070713_100078028 3300005436 Bacteria 2818
10 Ga0070710_10000533 3300005437 Bacteria 17973
11 Ga0070710_10014006 3300005437 Bacteria 4028
12 Ga0070707_100207670 3300005468 Bacteria 1909
13 Ga0070684_100394505 3300005535 Bacteria 1276
14 Ga0070697_100337446 3300005536 Bacteria 1300
15 Ga0070665_100121573 3300005548 Bacteria 2612
16 Ga0070665_100338535 3300005548 Bacteria 1509
17 Ga0070704_100544581 3300005549 Bacteria 1013
18 Ga0070664_100405639 3300005564 Bacteria 1247
19 Ga0068856_100008838 3300005614 Bacteria 9802
20 Ga0068856_100196795 3300005614 Bacteria 2029
21 Ga0068856_100435573 3300005614 Bacteria 1331
22 Ga0070702_100454074 3300005615 Bacteria 930
23 Ga0068864_100114070 3300005618 Bacteria 2409
24 Ga0068863_100171402 3300005841 Bacteria 2082
25 Ga0068858_100107696 3300005842 Bacteria 2602
26 Ga0081455_10142242 3300005937 Bacteria 1861
27 Ga0070717_10264846 3300006028 Bacteria 1521
28 Ga0075365_10021209 3300006038 Bacteria 4048
29 Ga0075364_10019855 3300006051 Bacteria 4223
30 Ga0070715_10076573 3300006163 Bacteria 1508
31 Ga0070716_100262941 3300006173 Bacteria 1182
32 Ga0075369_10004335 3300006186 Bacteria 5231
33 Ga0097621_100042386 3300006237 Bacteria 3666
34 Ga0075436_100195231 3300006914 Bacteria 1433
35 Ga0075435_100396912 3300007076 Bacteria 1186
36 Ga0105244_10062751 3300009036 Bacteria 1868
37 Ga0105244_10063064 3300009036 Bacteria 1862
38 Ga0105245_10134552 3300009098 Bacteria 2322
39 Ga0105247_10063408 3300009101 Bacteria 2294
40 Ga0105243_10005120 3300009148 Bacteria 10280
41 Ga0105248_10109348 3300009177 Bacteria 3116
42 Ga0105237_10438949 3300009545 Bacteria 1311
43 Ga0105238_10399113 3300009551 Bacteria 1368
44 Ga0105239_11526553 3300010375 Bacteria 772
45 Ga0157370_10146121 3300013104 Bacteria 2202
46 Ga0157370_10206747 3300013104 Bacteria 1820
47 Ga0157369_10145434 3300013105 Bacteria 2507
48 Ga0157369_10511070 3300013105 Bacteria 1243
49 Ga0171462_1002 3300013250 Bacteria 1052134
50 Ga0157374_10016741 3300013296 Bacteria 6450
51 Ga0163162_10061424 3300013306 Bacteria 3796
52 Ga0157372_10725129 3300013307 Bacteria 1156
53 Ga0157372_11053568 3300013307 Bacteria 941
54 Ga0157375_10191020 3300013308 Bacteria 2203
55 Ga0163163_10048644 3300014325 Bacteria 4170
56 Ga0157379_10048809 3300014968 Bacteria 3778
57 Ga0157376_10060930 3300014969 Bacteria 3171
58 Ga0163161_10105654 3300017792 Bacteria 2101
59 Ga0213875_10045227 3300021388 Bacteria 2067
60 Ga0213875_10087663 3300021388 Bacteria 1452
61 Ga0207655_1039690 3300025728 Bacteria 2040
62 Ga0207655_1045223 3300025728 Bacteria 1840
63 Ga0207692_10000395 3300025898 Bacteria 15094
64 Ga0207692_10075766 3300025898 Bacteria 1786
65 Ga0207685_10030943 3300025905 Bacteria 1911
66 Ga0207699_10023587 3300025906 Bacteria 3350
67 Ga0207671_10308980 3300025914 Bacteria 1250
68 Ga0207694_10097292 3300025924 Bacteria 2329
69 Ga0207700_10018635 3300025928 Bacteria 4671
70 Ga0207664_10017693 3300025929 Bacteria 5232
71 Ga0207709_10030289 3300025935 Bacteria 3146
72 Ga0207665_10046268 3300025939 Bacteria 2916
73 Ga0207711_10153828 3300025941 Bacteria 2077
74 Ga0207689_10214524 3300025942 Bacteria 1590
75 Ga0207661_10169106 3300025944 Bacteria 1902
76 Ga0207661_10594802 3300025944 Bacteria 1015
77 Ga0207668_10522020 3300025972 Bacteria 1025
78 Ga0207668_10694646 3300025972 Bacteria 894
79 Ga0207677_10053434 3300026023 Bacteria 2750
80 Ga0207703_10122131 3300026035 Bacteria 2237
81 Ga0207702_10067792 3300026078 Bacteria 3063
82 Ga0207676_10191230 3300026095 Bacteria 1801
83 Ga0207698_10099852 3300026142 Bacteria 2402
84 Ga0307517_10245246 3300028786 Bacteria 1058
85 Ga0373926_0031348 3300035083 Bacteria 1874
86 Ga0373923_0026480 3300035111 Bacteria 2307
87 Ga0373954_0216937 3300035118 Bacteria 941
88 Ga0373956_0097455 3300035119 Bacteria 1361
89 Ga0373957_0017376 3300035120 Bacteria 2503
90 Ga0373943_0137013 3300035170 Bacteria 1315
91 Ga0373946_0030076 3300035171 Bacteria 2166
92 Ga0373955_0130045 3300035172 Bacteria 1469
93 Ga0373933_0065294 3300035724 Bacteria 2203
94 Ga0373937_0193098 3300036401 Bacteria 1913
95 Ga0436364_0033027 3300037853 Bacteria 2897
96 Ga0436364_1056658 3300037853 Bacteria 6744
97 Ga0395901_0190970 3300038443 Bacteria 2148
98 Ga0451789_0126968 3300041443 Bacteria 907
99 Ga0451843_1758370 3300041509 Bacteria 778
100 Ga0451853_1393302 3300041512 Bacteria 1501
101 Ga0466969_0016378 3300044656 Bacteria 3879
102 Ga0466972_0002593 3300044658 Bacteria 8962
103 Ga0466972_0005887 3300044658 Bacteria 6149
104 Ga0466972_0007445 3300044658 Bacteria 5505
105 Ga0466972_0108989 3300044658 Bacteria 1309
106 Ga0466965_0003375 3300044683 Bacteria 6993
107 Ga0466965_0013190 3300044683 Bacteria 3895
108 Ga0466966_0001565 3300044684 Bacteria 14687
109 Ga0466963_0346316 3300044694 Bacteria 1046
110 Ga0466964_0082064 3300044706 Bacteria 1386
111 Ga0466968_0040256 3300044735 Bacteria 1970
112 Ga0466968_0043099 3300044735 Bacteria 1909
113 Ga0466970_0242258 3300044765 Bacteria 1009
114 Ga0466957_0000430 3300044842 Bacteria 20702
115 Ga0466957_0209748 3300044842 Bacteria 1282
116 Ga0466960_0017001 3300044901 Bacteria 3165
117 Ga0466959_0040556 3300045049 Bacteria 3439
118 Ga0466958_0000456 3300045836 Bacteria 17037
119 Ga0466967_0002094 3300045976 Bacteria 12227
120 Ga0466967_0011385 3300045976 Bacteria 6735
121 Ga0495592_0030054 3300046454 Bacteria 4109
122 Ga0495603_0312116 3300046455 Bacteria 903
123 Ga0495629_0000978 3300046459 Bacteria 22931
124 Ga0495638_0144895 3300046460 Bacteria 1383
125 Ga0495651_0001771 3300046462 Bacteria 16678
126 Ga0495653_0087461 3300046463 Bacteria 2288
127 Ga0495650_0155428 3300046471 Bacteria 819
128 Ga0495582_0074281 3300046473 Bacteria 1882
129 Ga0495639_0087095 3300046475 Bacteria 1461
130 Ga0495662_0038127 3300046476 Bacteria 2322
131 Ga0495664_0056042 3300046477 Bacteria 2344
132 Ga0495620_0178034 3300046515 Bacteria 823
133 Ga0495630_0064236 3300046517 Bacteria 2758
134 Ga0495652_0070863 3300046529 Bacteria 2911
135 Ga0495665_0050967 3300046531 Bacteria 2193
136 Ga0495587_0102320 3300046536 Bacteria 1649
137 Ga0495622_0003488 3300046557 Bacteria 7408
138 Ga0495667_0013925 3300046559 Bacteria 5431
139 Ga0495634_0086307 3300046642 Bacteria 2044
140 Ga0495625_0360718 3300046660 Bacteria 916
141 Ga0495635_0326447 3300046663 Bacteria 1026
142 Ga0495588_0020643 3300046674 Bacteria 3241
143 Ga0495657_0007352 3300046675 Bacteria 8517
144 Ga0495623_0132704 3300046679 Bacteria 1489
145 Ga0495646_0046889 3300046680 Bacteria 2632
146 Ga0495624_0152271 3300046690 Bacteria 1414
147 Ga0495589_0203069 3300046794 Bacteria 935
148 Ga0495600_0137341 3300046809 Bacteria 1587
149 Ga0495604_0110751 3300047317 Bacteria 2002
150 Ga0495674_0037509 3300047319 Bacteria 4355
151 Ga0495676_0000648 3300047321 Bacteria 28885
152 Ga0495680_0070513 3300047322 Bacteria 2664
153 Ga0495675_0109655 3300047444 Bacteria 1723
154 Ga0495684_0025221 3300047471 Bacteria 4571
155 Ga0495686_0364285 3300047472 Bacteria 783
156 Ga0495593_0021911 3300047673 Bacteria 3565
157 Ga0495602_0061945 3300048088 Bacteria 3248
158 Ga0495615_0011201 3300048090 Bacteria 1817
159 Ga0496102_0180326 3300048905 Bacteria 1990
160 Ga0496104_0020961 3300048907 Bacteria 5996
161 Ga0496104_0270739 3300048907 Bacteria 1611
162 Ga0496105_0118466 3300048908 Bacteria 2184
163 Ga0496105_0676667 3300048908 Bacteria 794
164 Ga0496106_0473550 3300048909 Bacteria 1006
165 Ga0496108_0029128 3300048911 Bacteria 4570
166 Ga0496110_0006937 3300048913 Bacteria 9009
167 Ga0496111_0102562 3300048914 Bacteria 2103
168 Ga0496116_0012265 3300048919 Bacteria 7009
169 Ga0496117_0003930 3300048920 Bacteria 16829
170 Ga0496117_0011106 3300048920 Bacteria 8099
171 Ga0496117_0237977 3300048920 Bacteria 1001
172 Ga0496118_0010431 3300048921 Bacteria 9203
173 Ga0496118_0105638 3300048921 Bacteria 1887
174 Ga0496119_0002253 3300048922 Bacteria 21452
175 Ga0496119_0017780 3300048922 Bacteria 5329
176 Ga0496119_0051740 3300048922 Bacteria 2521
177 Ga0496119_0092469 3300048922 Bacteria 1716
178 Ga0496120_0007627 3300048923 Bacteria 8019
179 Ga0496120_0035987 3300048923 Bacteria 2952
180 Ga0496122_0000071 3300048925 Bacteria 222537
181 Ga0496122_0000235 3300048925 Bacteria 124769
182 Ga0496122_0003161 3300048925 Bacteria 22016
183 Ga0496122_0205900 3300048925 Bacteria 1145
184 Ga0496123_0000006 3300048926 Bacteria 647258
185 Ga0496123_0000036 3300048926 Bacteria 265722
186 Ga0496123_0000172 3300048926 Bacteria 130598
187 Ga0496124_0002091 3300048927 Bacteria 26947
188 Ga0496124_0030169 3300048927 Bacteria 4816
189 Ga0496124_0098774 3300048927 Bacteria 2368
190 Ga0496125_0000223 3300048928 Bacteria 115921
191 Ga0496125_0001307 3300048928 Bacteria 36887
192 Ga0496125_0001828 3300048928 Bacteria 29377
193 Ga0496125_0005792 3300048928 Bacteria 13574
194 Ga0496125_0054799 3300048928 Bacteria 3255
195 Ga0496126_0830312 3300048929 Bacteria 706
196 Ga0501039_0294409 3300049575 Bacteria 1276
197 Ga0501076_0096062 3300049592 Bacteria 2387
198 Ga0501079_0427069 3300049741 Bacteria 1040
199 Ga0501045_0283799 3300049824 Bacteria 1232
200 nmdc:mga0rr50_277092_c1 3300050513 Bacteria 1399
201 Ga0495601_0054026 3300053077 Bacteria 2540
202 Ga0495595_0178526 3300053084 Bacteria 1052
203 Ga0495619_0062679 3300053085 Bacteria 2475
204 Ga0500568_0000122 3300053139 Bacteria 69756
205 Ga0466962_0001539 3300061719 Bacteria 10779

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046660 Ga0495625_0360718 Ga0495625_0360718_360_905 174
2 3300006038 Ga0075365_10021209 Ga0075365_100212092 195
3 3300006186 Ga0075369_10004335 Ga0075369_100043353 195
4 3300006051 Ga0075364_10019855 Ga0075364_100198555 196
5 3300053139 Ga0500568_0000122 Ga0500568_0000122_50802_51461 196
6 3300044658 Ga0466972_0005887 Ga0466972_0005887_1290_1934 198
7 3300044684 Ga0466966_0001565 Ga0466966_0001565_10166_10810 198
8 3300044706 Ga0466964_0082064 Ga0466964_0082064_524_1168 198
9 3300044765 Ga0466970_0242258 Ga0466970_0242258_70_714 198
10 3300044842 Ga0466957_0000430 Ga0466957_0000430_14033_14677 198
11 3300045049 Ga0466959_0040556 Ga0466959_0040556_1034_1678 198
12 3300045836 Ga0466958_0000456 Ga0466958_0000456_5068_5712 198
13 3300045976 Ga0466967_0002094 Ga0466967_0002094_1426_2070 198
14 3300061719 Ga0466962_0001539 Ga0466962_0001539_3574_4218 198
15 3300048925 Ga0496122_0205900 Ga0496122_0205900_101_781 201
16 3300044658 Ga0466972_0002593 Ga0466972_0002593_793_1428 202
17 3300044683 Ga0466965_0003375 Ga0466965_0003375_5110_5745 202
18 3300044735 Ga0466968_0043099 Ga0466968_0043099_645_1280 202
19 3300044901 Ga0466960_0017001 Ga0466960_0017001_909_1544 202
20 3300048929 Ga0496126_0830312 Ga0496126_0830312_62_682 202
21 iso_pu_bacteria 2643221553 2643785936 204
22 3300005437 Ga0070710_10000533 Ga0070710_1000053319 205
23 3300025898 Ga0207692_10000395 Ga0207692_100003958 205
24 3300028786 Ga0307517_10245246 Ga0307517_102452462 205
25 3300044658 Ga0466972_0007445 Ga0466972_0007445_4093_4740 205
26 3300005336 Ga0070680_100094934 Ga0070680_1000949342 206
27 3300005344 Ga0070661_100484625 Ga0070661_1004846252 206
28 3300005549 Ga0070704_100544581 Ga0070704_1005445811 206
29 3300005614 Ga0068856_100435573 Ga0068856_1004355732 206
30 3300013105 Ga0157369_10511070 Ga0157369_105110702 206
31 3300013307 Ga0157372_11053568 Ga0157372_110535682 206
32 3300048905 Ga0496102_0180326 Ga0496102_0180326_918_1574 206
33 3300009036 Ga0105244_10063064 Ga0105244_100630642 207
34 3300009148 Ga0105243_10005120 Ga0105243_100051202 207
35 3300021388 Ga0213875_10045227 Ga0213875_100452271 207
36 3300025728 Ga0207655_1039690 Ga0207655_10396902 207
37 3300025935 Ga0207709_10030289 Ga0207709_100302892 207
38 3300037853 Ga0436364_1056658 Ga0436364_1056658_4169_4828 207
39 3300044694 Ga0466963_0346316 Ga0466963_0346316_201_857 207
40 3300044842 Ga0466957_0209748 Ga0466957_0209748_473_1129 207
41 3300048922 Ga0496119_0092469 Ga0496119_0092469_857_1564 207
42 3300048925 Ga0496122_0003161 Ga0496122_0003161_1797_2537 207
43 3300048926 Ga0496123_0000172 Ga0496123_0000172_110558_111298 207
44 3300048927 Ga0496124_0002091 Ga0496124_0002091_22197_22937 207
45 iso_pu_bacteria 2773857763 2774397673 207
46 iso_pu_bacteria 2857737099 2857739025 207
47 iso_pu_bacteria 2906799679 2906802488 207
48 3300005334 Ga0068869_100197675 Ga0068869_1001976752 208
49 3300005338 Ga0068868_100072493 Ga0068868_1000724932 208
50 3300005435 Ga0070714_100062446 Ga0070714_1000624463 208
51 3300005435 Ga0070714_100130630 Ga0070714_1001306302 208
52 3300005436 Ga0070713_100078028 Ga0070713_1000780281 208
53 3300005437 Ga0070710_10014006 Ga0070710_100140065 208
54 3300005468 Ga0070707_100207670 Ga0070707_1002076702 208
55 3300005535 Ga0070684_100394505 Ga0070684_1003945052 208
56 3300005536 Ga0070697_100337446 Ga0070697_1003374462 208
57 3300005548 Ga0070665_100338535 Ga0070665_1003385352 208
58 3300005564 Ga0070664_100405639 Ga0070664_1004056392 208
59 3300005614 Ga0068856_100008838 Ga0068856_10000883811 208
60 3300005614 Ga0068856_100196795 Ga0068856_1001967952 208
61 3300005615 Ga0070702_100454074 Ga0070702_1004540742 208
62 3300005618 Ga0068864_100114070 Ga0068864_1001140702 208
63 3300005841 Ga0068863_100171402 Ga0068863_1001714022 208
64 3300005842 Ga0068858_100107696 Ga0068858_1001076962 208
65 3300006028 Ga0070717_10264846 Ga0070717_102648462 208
66 3300006163 Ga0070715_10076573 Ga0070715_100765732 208
67 3300006173 Ga0070716_100262941 Ga0070716_1002629412 208
68 3300006237 Ga0097621_100042386 Ga0097621_1000423862 208
69 3300006914 Ga0075436_100195231 Ga0075436_1001952312 208
70 3300007076 Ga0075435_100396912 Ga0075435_1003969122 208
71 3300009098 Ga0105245_10134552 Ga0105245_101345523 208
72 3300009101 Ga0105247_10063408 Ga0105247_100634083 208
73 3300009177 Ga0105248_10109348 Ga0105248_101093484 208
74 3300009545 Ga0105237_10438949 Ga0105237_104389492 208
75 3300009551 Ga0105238_10399113 Ga0105238_103991132 208
76 3300010375 Ga0105239_11526553 Ga0105239_115265531 208
77 3300013104 Ga0157370_10206747 Ga0157370_102067471 208
78 3300013105 Ga0157369_10145434 Ga0157369_101454342 208
79 3300013296 Ga0157374_10016741 Ga0157374_100167413 208
80 3300013306 Ga0163162_10061424 Ga0163162_100614244 208
81 3300013307 Ga0157372_10725129 Ga0157372_107251292 208
82 3300013308 Ga0157375_10191020 Ga0157375_101910203 208
83 3300014325 Ga0163163_10048644 Ga0163163_100486444 208
84 3300014968 Ga0157379_10048809 Ga0157379_100488095 208
85 3300014969 Ga0157376_10060930 Ga0157376_100609302 208
86 3300025898 Ga0207692_10075766 Ga0207692_100757662 208
87 3300025905 Ga0207685_10030943 Ga0207685_100309433 208
88 3300025906 Ga0207699_10023587 Ga0207699_100235872 208
89 3300025914 Ga0207671_10308980 Ga0207671_103089802 208
90 3300025924 Ga0207694_10097292 Ga0207694_100972922 208
91 3300025928 Ga0207700_10018635 Ga0207700_100186354 208
92 3300025929 Ga0207664_10017693 Ga0207664_100176935 208
93 3300025939 Ga0207665_10046268 Ga0207665_100462682 208
94 3300025941 Ga0207711_10153828 Ga0207711_101538282 208
95 3300025942 Ga0207689_10214524 Ga0207689_102145242 208
96 3300025944 Ga0207661_10594802 Ga0207661_105948022 208
97 3300026023 Ga0207677_10053434 Ga0207677_100534344 208
98 3300026035 Ga0207703_10122131 Ga0207703_101221312 208
99 3300026078 Ga0207702_10067792 Ga0207702_100677923 208
100 3300026095 Ga0207676_10191230 Ga0207676_101912302 208
101 3300026142 Ga0207698_10099852 Ga0207698_100998523 208
102 3300035083 Ga0373926_0031348 Ga0373926_0031348_880_1548 208
103 3300035111 Ga0373923_0026480 Ga0373923_0026480_217_885 208
104 3300035118 Ga0373954_0216937 Ga0373954_0216937_45_713 208
105 3300035119 Ga0373956_0097455 Ga0373956_0097455_65_733 208
106 3300035120 Ga0373957_0017376 Ga0373957_0017376_1076_1744 208
107 3300035170 Ga0373943_0137013 Ga0373943_0137013_406_1074 208
108 3300035171 Ga0373946_0030076 Ga0373946_0030076_1474_2142 208
109 3300035172 Ga0373955_0130045 Ga0373955_0130045_413_1081 208
110 3300035724 Ga0373933_0065294 Ga0373933_0065294_258_926 208
111 3300036401 Ga0373937_0193098 Ga0373937_0193098_430_1098 208
112 3300046454 Ga0495592_0030054 Ga0495592_0030054_3289_3957 208
113 3300046455 Ga0495603_0312116 Ga0495603_0312116_135_803 208
114 3300046462 Ga0495651_0001771 Ga0495651_0001771_2944_3612 208
115 3300046463 Ga0495653_0087461 Ga0495653_0087461_227_895 208
116 3300046473 Ga0495582_0074281 Ga0495582_0074281_711_1379 208
117 3300046475 Ga0495639_0087095 Ga0495639_0087095_356_1024 208
118 3300046476 Ga0495662_0038127 Ga0495662_0038127_211_879 208
119 3300046477 Ga0495664_0056042 Ga0495664_0056042_1525_2193 208
120 3300046517 Ga0495630_0064236 Ga0495630_0064236_542_1210 208
121 3300046529 Ga0495652_0070863 Ga0495652_0070863_522_1190 208
122 3300046531 Ga0495665_0050967 Ga0495665_0050967_492_1160 208
123 3300046536 Ga0495587_0102320 Ga0495587_0102320_779_1447 208
124 3300046559 Ga0495667_0013925 Ga0495667_0013925_3243_3911 208
125 3300046642 Ga0495634_0086307 Ga0495634_0086307_1057_1725 208
126 3300046663 Ga0495635_0326447 Ga0495635_0326447_267_935 208
127 3300046675 Ga0495657_0007352 Ga0495657_0007352_5315_5983 208
128 3300046679 Ga0495623_0132704 Ga0495623_0132704_755_1423 208
129 3300046680 Ga0495646_0046889 Ga0495646_0046889_327_995 208
130 3300046690 Ga0495624_0152271 Ga0495624_0152271_285_953 208
131 3300046809 Ga0495600_0137341 Ga0495600_0137341_293_961 208
132 3300047317 Ga0495604_0110751 Ga0495604_0110751_293_961 208
133 3300047319 Ga0495674_0037509 Ga0495674_0037509_2280_2948 208
134 3300047322 Ga0495680_0070513 Ga0495680_0070513_286_954 208
135 3300047444 Ga0495675_0109655 Ga0495675_0109655_779_1447 208
136 3300047471 Ga0495684_0025221 Ga0495684_0025221_2651_3319 208
137 3300047673 Ga0495593_0021911 Ga0495593_0021911_195_863 208
138 3300048088 Ga0495602_0061945 Ga0495602_0061945_867_1535 208
139 3300048907 Ga0496104_0020961 Ga0496104_0020961_4771_5439 208
140 3300048907 Ga0496104_0270739 Ga0496104_0270739_259_927 208
141 3300048908 Ga0496105_0118466 Ga0496105_0118466_326_994 208
142 3300048909 Ga0496106_0473550 Ga0496106_0473550_191_859 208
143 3300048911 Ga0496108_0029128 Ga0496108_0029128_129_797 208
144 3300048913 Ga0496110_0006937 Ga0496110_0006937_4689_5357 208
145 3300048914 Ga0496111_0102562 Ga0496111_0102562_225_893 208
146 3300050513 nmdc:mga0rr50_277092_c1 nmdc:mga0rr50_277092_c1_380_1048 208
147 3300053077 Ga0495601_0054026 Ga0495601_0054026_1357_2025 208
148 3300053084 Ga0495595_0178526 Ga0495595_0178526_220_888 208
149 3300053085 Ga0495619_0062679 Ga0495619_0062679_280_948 208
150 iso_pu_bacteria 2675903060 2676491900 208
151 iso_pu_bacteria 2977251589 2977252377 208
152 iso_pu_bacteria 8047710418 8047714797 208
153 3300025944 Ga0207661_10169106 Ga0207661_101691062 209
154 3300025972 Ga0207668_10522020 Ga0207668_105220201 209
155 3300044656 Ga0466969_0016378 Ga0466969_0016378_1016_1699 209
156 3300045976 Ga0466967_0011385 Ga0466967_0011385_1257_1913 209
157 3300048922 Ga0496119_0002253 Ga0496119_0002253_868_1551 209
158 3300048923 Ga0496120_0035987 Ga0496120_0035987_197_880 209
159 iso_pu_bacteria 2821268502 2821271567 209
160 3300005937 Ga0081455_10142242 Ga0081455_101422422 210
161 3300009036 Ga0105244_10062751 Ga0105244_100627512 210
162 3300021388 Ga0213875_10087663 Ga0213875_100876632 210
163 3300025728 Ga0207655_1045223 Ga0207655_10452232 210
164 3300025972 Ga0207668_10694646 Ga0207668_106946462 210
165 3300037853 Ga0436364_0033027 Ga0436364_0033027_634_1314 210
166 3300038443 Ga0395901_0190970 Ga0395901_0190970_80_745 210
167 3300046459 Ga0495629_0000978 Ga0495629_0000978_17244_17897 210
168 3300046460 Ga0495638_0144895 Ga0495638_0144895_598_1251 210
169 3300046515 Ga0495620_0178034 Ga0495620_0178034_64_717 210
170 3300046557 Ga0495622_0003488 Ga0495622_0003488_3553_4206 210
171 3300046674 Ga0495588_0020643 Ga0495588_0020643_1914_2567 210
172 3300046794 Ga0495589_0203069 Ga0495589_0203069_97_750 210
173 3300047321 Ga0495676_0000648 Ga0495676_0000648_11790_12443 210
174 3300047472 Ga0495686_0364285 Ga0495686_0364285_88_741 210
175 3300048922 Ga0496119_0017780 Ga0496119_0017780_95_820 210
176 3300048928 Ga0496125_0001307 Ga0496125_0001307_20787_21545 210
177 3300049592 Ga0501076_0096062 Ga0501076_0096062_1525_2193 210
178 3300049741 Ga0501079_0427069 Ga0501079_0427069_345_1013 210
179 3300049824 Ga0501045_0283799 Ga0501045_0283799_450_1118 210
180 iso_pu_bacteria 2643221597 2643997171 210
181 iso_pu_bacteria 8045830549 8045832953 210
182 3300013250 Ga0171462_1002 Ga0171462_1002309 211
183 3300041443 Ga0451789_0126968 Ga0451789_0126968_91_738 211
184 3300049575 Ga0501039_0294409 Ga0501039_0294409_137_886 211
185 iso_pu_bacteria 2808606447 2809225997 211
186 iso_pu_bacteria 2852632344 2852635115 211
187 3300048920 Ga0496117_0011106 Ga0496117_0011106_3582_4250 212
188 3300048921 Ga0496118_0105638 Ga0496118_0105638_1163_1834 212
189 3300048928 Ga0496125_0000223 Ga0496125_0000223_25321_26028 212
190 iso_pu_bacteria 2643221566 2643847188 212
191 iso_pu_bacteria 2643221575 2643887787 212
192 iso_pu_bacteria 8004212874 8004215197 212
193 3300005548 Ga0070665_100121573 Ga0070665_1001215731 213
194 3300017792 Ga0163161_10105654 Ga0163161_101056542 213
195 3300044658 Ga0466972_0108989 Ga0466972_0108989_486_1196 213
196 3300044735 Ga0466968_0040256 Ga0466968_0040256_973_1683 213
197 3300046471 Ga0495650_0155428 Ga0495650_0155428_99_761 213
198 3300048090 Ga0495615_0011201 Ga0495615_0011201_469_1131 213
199 3300048928 Ga0496125_0001828 Ga0496125_0001828_2284_2979 213
200 3300048920 Ga0496117_0003930 Ga0496117_0003930_3948_4631 214
201 3300048921 Ga0496118_0010431 Ga0496118_0010431_3444_4127 214
202 3300048925 Ga0496122_0000235 Ga0496122_0000235_91926_92609 214
203 3300048926 Ga0496123_0000036 Ga0496123_0000036_32165_32848 214
204 3300048927 Ga0496124_0098774 Ga0496124_0098774_1145_1828 214
205 3300048928 Ga0496125_0005792 Ga0496125_0005792_8674_9357 214
206 iso_pu_bacteria 2808606306 2808629261 214
207 iso_pu_bacteria 2811994880 2812362409 214
208 iso_pu_bacteria 2857720070 2857722368 214
209 iso_pu_bacteria 3001889506 3001890196 214
210 3300041509 Ga0451843_1758370 Ga0451843_1758370_92_763 215
211 3300048908 Ga0496105_0676667 Ga0496105_0676667_79_741 215
212 3300048919 Ga0496116_0012265 Ga0496116_0012265_340_1002 215
213 3300048920 Ga0496117_0237977 Ga0496117_0237977_304_966 215
214 3300048922 Ga0496119_0051740 Ga0496119_0051740_1538_2200 215
215 3300048923 Ga0496120_0007627 Ga0496120_0007627_5879_6541 215
216 3300048925 Ga0496122_0000071 Ga0496122_0000071_128342_129004 215
217 3300048926 Ga0496123_0000006 Ga0496123_0000006_553066_553728 215
218 3300048927 Ga0496124_0030169 Ga0496124_0030169_304_966 215
219 3300048928 Ga0496125_0054799 Ga0496125_0054799_2558_3220 215
220 3300003578 Ga0006562J51391_1035822 Ga0006562J51391_103582227 216
221 3300003578 Ga0006562J51391_1035824 Ga0006562J51391_103582412 216
222 3300013104 Ga0157370_10146121 Ga0157370_101461212 216
223 3300041512 Ga0451853_1393302 Ga0451853_1393302_101_844 216
224 3300044683 Ga0466965_0013190 Ga0466965_0013190_1425_2150 216

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

1

112

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

193

249

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wul-assembly1.cif.gz_B crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9936 155 216
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.9837 156 216
1zlk-assembly1.cif.gz_B crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain-dna complex 0.9804 155 210
7od9-assembly1.cif.gz_B crystal structure of activated chey fused to the c-terminal domain of chef 0.9728 1 112
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9725 152 216
ID Description Score Start End Superfamily
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9881 156 213 1.10.10.10
1zlkB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9804 155 210 1.10.10.10
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9708 153 212 1.10.10.10
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9679 1 112 3.40.50.2300
4if4D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9653 1 138 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7C6XY93-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9783 2 117 GO:0000155
GO:0016020
GO:0046983
AF-A0A701W0F1-F1-model_v4 Response regulator 0.9763 1 88 GO:0000160
GO:0003677
AF-A0A1M4ND27-F1-model_v4 Stage 0 sporulation protein A homolog 0.9749 1 121 GO:0000160
AF-A0A7C6R422-F1-model_v4 Stage 0 sporulation protein A homolog 0.9742 1 72 GO:0000160
AF-A0A7W0GWP8-F1-model_v4 Response regulator transcription factor 0.9724 2 122 GO:0000160

Feature Viewer

pLDDT pTM Quality
84.99 0.76 High
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Predicted Structure (AlphaFold2)

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