F336809

General Info

Members Datasets Scaffolds Average Seq Length
224 133 448 362

Family's Representative Sequence

Representative Sequence 3300025929|Ga0207664_10169017|Ga0207664_101690171
Length 414
Sequence MAVKPLITRGNASPPGRGARQFVRRYSALLIAVNHLWIIISAALGLLVLILAVLLFFTGRRSRRGADERVGAVVQTLEKRMDELATELAGAVERAEEEGRRSRFLGEIAGSIDMDEVLARTLEAGTRLEGVDAALIRLESPEGVPTVAAHGLSADGAEAISGPPDGARARAIEVSYRYRDDEPDQESLIAGGLAVPLEENGSRMGYLSVYTRNRRRQFEEEDVRQLEELTHRATPAIENARRFREARQLADLDALTGLHNRRYFHETLARECARAHRYNRRLALIVFDLDDFKEVNDKVGHLAGDAVLAEAADRVREVIRNADIPCRVGGDEFAVILPESGIVQAEQLFGRLQGAISNRPIGQAGRLHISAGVAELKPDDDSISFFERGDNALYRAKEAGKGQSVAADGGRASA

Samples

Sample ID Description Type Environment
1 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
29 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
66 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
69 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
70 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
71 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
74 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
75 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
76 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
77 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
78 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
81 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
82 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
83 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
84 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
87 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
90 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
91 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
94 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
95 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
96 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
97 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
98 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
99 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
100 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
101 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
102 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
103 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
104 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
105 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
106 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
107 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
108 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
109 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
110 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
111 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
112 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
113 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
114 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
115 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
116 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
117 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
118 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
119 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
120 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
121 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
122 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
123 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
124 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
125 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
126 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
127 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
131 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
132 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
133 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.11
Metatranscriptomes 0.89
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 20.09
Rhizosphere 79.91
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207664_10169017 3300025929 Bacteria 1870
2 Ga0070658_10087565 3300005327 Bacteria 2563
3 Ga0070683_100028169 3300005329 Bacteria 5075
4 Ga0070690_100078521 3300005330 Bacteria 2157
5 Ga0070682_100024337 3300005337 Bacteria 3602
6 Ga0070660_100049509 3300005339 Bacteria 3230
7 Ga0070660_100089485 3300005339 Bacteria 2425
8 Ga0070660_100126030 3300005339 Bacteria 2046
9 Ga0070661_100099258 3300005344 Bacteria 2163
10 Ga0070709_10094676 3300005434 Bacteria 1976
11 Ga0070714_100016722 3300005435 Bacteria 5931
12 Ga0070714_100050939 3300005435 Bacteria 3529
13 Ga0070714_100076405 3300005435 Bacteria 2908
14 Ga0070714_100089906 3300005435 Bacteria 2688
15 Ga0070713_100043779 3300005436 Bacteria 3662
16 Ga0070713_100045525 3300005436 Bacteria 3596
17 Ga0070713_100151160 3300005436 Bacteria 2066
18 Ga0070710_10005272 3300005437 Bacteria 6129
19 Ga0070710_10006368 3300005437 Bacteria 5668
20 Ga0070710_10020322 3300005437 Bacteria 3443
21 Ga0070711_100004345 3300005439 Bacteria 8347
22 Ga0070711_100063227 3300005439 Bacteria 2582
23 Ga0070711_100118181 3300005439 Bacteria 1956
24 Ga0070694_100119925 3300005444 Bacteria 1886
25 Ga0070708_100014375 3300005445 Bacteria 6511
26 Ga0070663_100147100 3300005455 Bacteria 1803
27 Ga0070678_100031065 3300005456 Bacteria 3679
28 Ga0070681_10079292 3300005458 Bacteria 3240
29 Ga0070681_10087830 3300005458 Bacteria 3061
30 Ga0070681_10273187 3300005458 Bacteria 1601
31 Ga0070698_100020607 3300005471 Bacteria 6912
32 Ga0070698_100162158 3300005471 Bacteria 2179
33 Ga0070679_100053820 3300005530 Bacteria 4006
34 Ga0070684_100077624 3300005535 Bacteria 2933
35 Ga0068853_100152617 3300005539 Bacteria 2080
36 Ga0070696_100085883 3300005546 Bacteria 2233
37 Ga0070693_100010133 3300005547 Bacteria 4709
38 Ga0068856_100219914 3300005614 Bacteria 1915
39 Ga0081455_10052200 3300005937 Bacteria 3502
40 Ga0081538_10047021 3300005981 Bacteria 2652
41 Ga0070717_10011659 3300006028 Bacteria 6683
42 Ga0070715_10000565 3300006163 Bacteria 9750
43 Ga0070716_100006022 3300006173 Bacteria 5908
44 Ga0070712_100071714 3300006175 Bacteria 2479
45 Ga0068871_100014156 3300006358 Bacteria 5936
46 Ga0075428_100032505 3300006844 Bacteria 5763
47 Ga0075430_100108917 3300006846 Bacteria 2311
48 Ga0075431_100032391 3300006847 Bacteria 5386
49 Ga0075429_100027235 3300006880 Bacteria 4960
50 Ga0111539_10407824 3300009094 Bacteria 1583
51 Ga0105247_10072277 3300009101 Bacteria 2159
52 Ga0114129_10227524 3300009147 Bacteria 2513
53 Ga0114129_10312242 3300009147 Bacteria 2092
54 Ga0114129_10350384 3300009147 Bacteria 1956
55 Ga0105241_10030717 3300009174 Bacteria 4018
56 Ga0105248_10044211 3300009177 Bacteria 4995
57 Ga0157373_10101318 3300013100 Bacteria 2026
58 Ga0157369_10361611 3300013105 Bacteria 1507
59 Ga0157374_10071373 3300013296 Bacteria 3274
60 Ga0157372_10396721 3300013307 Bacteria 1608
61 Ga0157375_10048326 3300013308 Bacteria 4161
62 Ga0157379_10237338 3300014968 Bacteria 1653
63 Ga0157376_10028172 3300014969 Bacteria 4462
64 Ga0206354_11159612 3300020081 Bacteria 2618
65 Ga0206353_11971841 3300020082 Bacteria 2640
66 Ga0207692_10007767 3300025898 Bacteria 4409
67 Ga0207710_10036788 3300025900 Bacteria 2159
68 Ga0207699_10002820 3300025906 Bacteria 8226
69 Ga0207699_10060317 3300025906 Bacteria 2277
70 Ga0207705_10068235 3300025909 Bacteria 2574
71 Ga0207707_10042534 3300025912 Bacteria 3964
72 Ga0207707_10043522 3300025912 Bacteria 3917
73 Ga0207693_10006180 3300025915 Bacteria 9934
74 Ga0207693_10008279 3300025915 Bacteria 8516
75 Ga0207693_10012566 3300025915 Bacteria 6839
76 Ga0207693_10029811 3300025915 Bacteria 4307
77 Ga0207693_10032467 3300025915 Bacteria 4121
78 Ga0207693_10050700 3300025915 Bacteria 3259
79 Ga0207663_10007797 3300025916 Bacteria 5576
80 Ga0207663_10010109 3300025916 Bacteria 5006
81 Ga0207657_10017569 3300025919 Bacteria 6853
82 Ga0207657_10034630 3300025919 Bacteria 4539
83 Ga0207646_10006167 3300025922 Bacteria 12463
84 Ga0207664_10011360 3300025929 Bacteria 6325
85 Ga0207664_10022997 3300025929 Bacteria 4664
86 Ga0207664_10049900 3300025929 Bacteria 3297
87 Ga0207664_10054915 3300025929 Bacteria 3158
88 Ga0207665_10006962 3300025939 Bacteria 7483
89 Ga0207665_10010283 3300025939 Bacteria 6142
90 Ga0207665_10132514 3300025939 Bacteria 1771
91 Ga0207711_10021100 3300025941 Bacteria 5441
92 Ga0207667_10351184 3300025949 Bacteria 1504
93 Ga0207702_10057369 3300026078 Bacteria 3309
94 Ga0207683_10009147 3300026121 Bacteria 8442
95 Ga0209998_10014906 3300027717 Bacteria 1625
96 Ga0265319_1001715 3300028563 Bacteria 12639
97 Ga0265318_10005575 3300028577 Bacteria 5900
98 Ga0265338_10006529 3300028800 Bacteria 14826
99 Ga0265320_10011013 3300031240 Bacteria 5345
100 Ga0265340_10008272 3300031247 Bacteria 5620
101 Ga0265327_10032655 3300031251 Bacteria 2910
102 Ga0265316_10010068 3300031344 Bacteria 8645
103 Ga0265314_10017019 3300031711 Bacteria 5717
104 Ga0265342_10009012 3300031712 Bacteria 7087
105 Ga0373949_0029381 3300035090 Bacteria 1302
106 Ga0373952_0002318 3300035092 Bacteria 3431
107 Ga0373925_0106068 3300037068 Bacteria 2166
108 Ga0395899_0030707 3300037312 Bacteria 4040
109 Ga0395899_0033987 3300037312 Bacteria 3828
110 Ga0395900_0232477 3300037418 Bacteria 1853
111 Ga0395898_0006566 3300037466 Bacteria 12409
112 Ga0395898_0045004 3300037466 Bacteria 4339
113 Ga0395898_0294170 3300037466 Bacteria 1549
114 Ga0395901_0030522 3300038443 Bacteria 5553
115 Ga0395901_0063398 3300038443 Bacteria 3846
116 Ga0395901_0312049 3300038443 Bacteria 1628
117 Ga0439448_0018078 3300042005 Bacteria 2157
118 Ga0450918_010198 3300042531 Bacteria 1641
119 Ga0466969_0043327 3300044656 Bacteria 2243
120 Ga0466966_0009082 3300044684 Bacteria 6587
121 Ga0466963_0003701 3300044694 Bacteria 8794
122 Ga0466963_0004471 3300044694 Bacteria 8134
123 Ga0466963_0014876 3300044694 Bacteria 4806
124 Ga0466963_0021824 3300044694 Bacteria 4045
125 Ga0466963_0047344 3300044694 Bacteria 2838
126 Ga0466964_0018619 3300044706 Bacteria 2666
127 Ga0466971_0025001 3300044719 Bacteria 2667
128 Ga0466957_0017579 3300044842 Bacteria 4191
129 Ga0466957_0078131 3300044842 Bacteria 2057
130 Ga0466960_0006002 3300044901 Bacteria 4850
131 Ga0466960_0012040 3300044901 Bacteria 3640
132 Ga0466959_0005947 3300045049 Bacteria 8413
133 Ga0466958_0004460 3300045836 Bacteria 7391
134 Ga0466958_0020492 3300045836 Bacteria 3856
135 Ga0466967_0006451 3300045976 Bacteria 8302
136 Ga0466967_0008844 3300045976 Bacteria 7424
137 Ga0466967_0013513 3300045976 Bacteria 6313
138 Ga0466967_0021669 3300045976 Bacteria 5226
139 Ga0466967_0033004 3300045976 Bacteria 4378
140 Ga0466967_0035150 3300045976 Bacteria 4261
141 Ga0466967_0041751 3300045976 Bacteria 3958
142 Ga0466967_0044898 3300045976 Bacteria 3837
143 Ga0466967_0045124 3300045976 Bacteria 3828
144 Ga0466967_0048763 3300045976 Bacteria 3700
145 Ga0466967_0176479 3300045976 Bacteria 2013
146 Ga0495629_0025764 3300046459 Bacteria 4180
147 Ga0495629_0103467 3300046459 Bacteria 1986
148 Ga0495653_0062040 3300046463 Bacteria 2826
149 Ga0495653_0082438 3300046463 Bacteria 2374
150 Ga0495582_0015963 3300046473 Bacteria 4117
151 Ga0495605_0042779 3300046474 Bacteria 2249
152 Ga0495639_0032641 3300046475 Bacteria 2323
153 Ga0495662_0025901 3300046476 Bacteria 2833
154 Ga0495594_0024508 3300046499 Bacteria 3241
155 Ga0495594_0172185 3300046499 Bacteria 1232
156 Ga0495596_0051256 3300046500 Bacteria 1617
157 Ga0495630_0103487 3300046517 Bacteria 2154
158 Ga0495640_0018556 3300046533 Bacteria 5153
159 Ga0495634_0049480 3300046642 Bacteria 2826
160 Ga0495624_0037577 3300046690 Bacteria 3113
161 Ga0495670_0111159 3300046691 Bacteria 1418
162 Ga0495581_0052602 3300047315 Bacteria 2352
163 Ga0495581_0090268 3300047315 Bacteria 1777
164 Ga0495674_0007670 3300047319 Bacteria 10308
165 Ga0496100_0050044 3300048903 Bacteria 2705
166 Ga0496100_0074853 3300048903 Bacteria 2269
167 Ga0496100_0246208 3300048903 Bacteria 1321
168 Ga0496101_0007716 3300048904 Bacteria 6990
169 Ga0496101_0019351 3300048904 Bacteria 4646
170 Ga0496102_0003464 3300048905 Bacteria 13382
171 Ga0496102_0390024 3300048905 Bacteria 1310
172 Ga0496103_0003625 3300048906 Bacteria 9411
173 Ga0496103_0004657 3300048906 Bacteria 8307
174 Ga0496103_0032873 3300048906 Bacteria 3168
175 Ga0496104_0018281 3300048907 Bacteria 6395
176 Ga0496104_0048390 3300048907 Bacteria 4009
177 Ga0496104_0229089 3300048907 Bacteria 1770
178 Ga0496105_0017309 3300048908 Bacteria 5775
179 Ga0496105_0027095 3300048908 Bacteria 4678
180 Ga0496105_0136190 3300048908 Bacteria 2023
181 Ga0496106_0002532 3300048909 Bacteria 13605
182 Ga0496106_0006123 3300048909 Bacteria 8899
183 Ga0496106_0015886 3300048909 Bacteria 5569
184 Ga0496107_0001409 3300048910 Bacteria 14833
185 Ga0496107_0031040 3300048910 Bacteria 3810
186 Ga0496107_0078771 3300048910 Bacteria 2401
187 Ga0496108_0003784 3300048911 Bacteria 12111
188 Ga0496108_0007953 3300048911 Bacteria 8598
189 Ga0496108_0170378 3300048911 Bacteria 1884
190 Ga0496109_0001046 3300048912 Bacteria 22890
191 Ga0496110_0005021 3300048913 Bacteria 10336
192 Ga0496110_0006738 3300048913 Bacteria 9133
193 Ga0496110_0010769 3300048913 Bacteria 7453
194 Ga0496111_0004947 3300048914 Bacteria 8469
195 Ga0496111_0005501 3300048914 Bacteria 8132
196 Ga0496111_0061008 3300048914 Bacteria 2733
197 Ga0496112_0029776 3300048915 Bacteria 5282
198 Ga0496112_0037958 3300048915 Bacteria 4704
199 Ga0496112_0048601 3300048915 Bacteria 4159
200 Ga0496112_0068955 3300048915 Bacteria 3493
201 Ga0496112_0072295 3300048915 Bacteria 3409
202 Ga0496112_0108066 3300048915 Bacteria 2752
203 Ga0496112_0214224 3300048915 Bacteria 1883
204 Ga0496113_0002722 3300048916 Bacteria 10379
205 Ga0496113_0139018 3300048916 Bacteria 1910
206 Ga0496114_0092491 3300048917 Bacteria 2569
207 Ga0496114_0121185 3300048917 Bacteria 2249
208 Ga0496115_0012716 3300048918 Bacteria 6342
209 Ga0496115_0075706 3300048918 Bacteria 2734
210 Ga0501067_0016292 3300049583 Bacteria 4107
211 Ga0501072_0352913 3300049588 Bacteria 1168
212 nmdc:mga05p37_361034_c1 3300050507 Bacteria 1708
213 nmdc:mga05p37_7064_c1 3300050507 Bacteria 13233
214 nmdc:mga09592_36346_c1 3300050508 Bacteria 4125
215 nmdc:mga0qj67_28511_c1 3300050509 Bacteria 4334
216 nmdc:mga0qj67_79479_c1 3300050509 Bacteria 2627
217 nmdc:mga06r32_79841_c1 3300050510 Bacteria 3183
218 nmdc:mga0rr50_15257_c1 3300050513 Bacteria 5067
219 nmdc:mga0rr50_28419_c1 3300050513 Bacteria 3931
220 nmdc:mga0a205_71155_c2 3300050515 Bacteria 2037
221 Ga0495619_0006219 3300053085 Bacteria 7570
222 Ga0495619_0025069 3300053085 Bacteria 3827
223 Ga0466962_0004844 3300061719 Bacteria 6477
224 Ga0466962_0052814 3300061719 Bacteria 1942
225 Ga0207664_10169017
226 Ga0070658_10087565
227 Ga0070683_100028169
228 Ga0070690_100078521
229 Ga0070682_100024337
230 Ga0070660_100049509
231 Ga0070660_100089485
232 Ga0070660_100126030
233 Ga0070661_100099258
234 Ga0070709_10094676
235 Ga0070714_100016722
236 Ga0070714_100050939
237 Ga0070714_100076405
238 Ga0070714_100089906
239 Ga0070713_100043779
240 Ga0070713_100045525
241 Ga0070713_100151160
242 Ga0070710_10005272
243 Ga0070710_10006368
244 Ga0070710_10020322
245 Ga0070711_100004345
246 Ga0070711_100063227
247 Ga0070711_100118181
248 Ga0070694_100119925
249 Ga0070708_100014375
250 Ga0070663_100147100
251 Ga0070678_100031065
252 Ga0070681_10079292
253 Ga0070681_10087830
254 Ga0070681_10273187
255 Ga0070698_100020607
256 Ga0070698_100162158
257 Ga0070679_100053820
258 Ga0070684_100077624
259 Ga0068853_100152617
260 Ga0070696_100085883
261 Ga0070693_100010133
262 Ga0068856_100219914
263 Ga0081455_10052200
264 Ga0081538_10047021
265 Ga0070717_10011659
266 Ga0070715_10000565
267 Ga0070716_100006022
268 Ga0070712_100071714
269 Ga0068871_100014156
270 Ga0075428_100032505
271 Ga0075430_100108917
272 Ga0075431_100032391
273 Ga0075429_100027235
274 Ga0111539_10407824
275 Ga0105247_10072277
276 Ga0114129_10227524
277 Ga0114129_10312242
278 Ga0114129_10350384
279 Ga0105241_10030717
280 Ga0105248_10044211
281 Ga0157373_10101318
282 Ga0157369_10361611
283 Ga0157374_10071373
284 Ga0157372_10396721
285 Ga0157375_10048326
286 Ga0157379_10237338
287 Ga0157376_10028172
288 Ga0206354_11159612
289 Ga0206353_11971841
290 Ga0207692_10007767
291 Ga0207710_10036788
292 Ga0207699_10002820
293 Ga0207699_10060317
294 Ga0207705_10068235
295 Ga0207707_10042534
296 Ga0207707_10043522
297 Ga0207693_10006180
298 Ga0207693_10008279
299 Ga0207693_10012566
300 Ga0207693_10029811
301 Ga0207693_10032467
302 Ga0207693_10050700
303 Ga0207663_10007797
304 Ga0207663_10010109
305 Ga0207657_10017569
306 Ga0207657_10034630
307 Ga0207646_10006167
308 Ga0207664_10011360
309 Ga0207664_10022997
310 Ga0207664_10049900
311 Ga0207664_10054915
312 Ga0207665_10006962
313 Ga0207665_10010283
314 Ga0207665_10132514
315 Ga0207711_10021100
316 Ga0207667_10351184
317 Ga0207702_10057369
318 Ga0207683_10009147
319 Ga0209998_10014906
320 Ga0265319_1001715
321 Ga0265318_10005575
322 Ga0265338_10006529
323 Ga0265320_10011013
324 Ga0265340_10008272
325 Ga0265327_10032655
326 Ga0265316_10010068
327 Ga0265314_10017019
328 Ga0265342_10009012
329 Ga0373949_0029381
330 Ga0373952_0002318
331 Ga0373925_0106068
332 Ga0395899_0030707
333 Ga0395899_0033987
334 Ga0395900_0232477
335 Ga0395898_0006566
336 Ga0395898_0045004
337 Ga0395898_0294170
338 Ga0395901_0030522
339 Ga0395901_0063398
340 Ga0395901_0312049
341 Ga0439448_0018078
342 Ga0450918_010198
343 Ga0466969_0043327
344 Ga0466966_0009082
345 Ga0466963_0003701
346 Ga0466963_0004471
347 Ga0466963_0014876
348 Ga0466963_0021824
349 Ga0466963_0047344
350 Ga0466964_0018619
351 Ga0466971_0025001
352 Ga0466957_0017579
353 Ga0466957_0078131
354 Ga0466960_0006002
355 Ga0466960_0012040
356 Ga0466959_0005947
357 Ga0466958_0004460
358 Ga0466958_0020492
359 Ga0466967_0006451
360 Ga0466967_0008844
361 Ga0466967_0013513
362 Ga0466967_0021669
363 Ga0466967_0033004
364 Ga0466967_0035150
365 Ga0466967_0041751
366 Ga0466967_0044898
367 Ga0466967_0045124
368 Ga0466967_0048763
369 Ga0466967_0176479
370 Ga0495629_0025764
371 Ga0495629_0103467
372 Ga0495653_0062040
373 Ga0495653_0082438
374 Ga0495582_0015963
375 Ga0495605_0042779
376 Ga0495639_0032641
377 Ga0495662_0025901
378 Ga0495594_0024508
379 Ga0495594_0172185
380 Ga0495596_0051256
381 Ga0495630_0103487
382 Ga0495640_0018556
383 Ga0495634_0049480
384 Ga0495624_0037577
385 Ga0495670_0111159
386 Ga0495581_0052602
387 Ga0495581_0090268
388 Ga0495674_0007670
389 Ga0496100_0050044
390 Ga0496100_0074853
391 Ga0496100_0246208
392 Ga0496101_0007716
393 Ga0496101_0019351
394 Ga0496102_0003464
395 Ga0496102_0390024
396 Ga0496103_0003625
397 Ga0496103_0004657
398 Ga0496103_0032873
399 Ga0496104_0018281
400 Ga0496104_0048390
401 Ga0496104_0229089
402 Ga0496105_0017309
403 Ga0496105_0027095
404 Ga0496105_0136190
405 Ga0496106_0002532
406 Ga0496106_0006123
407 Ga0496106_0015886
408 Ga0496107_0001409
409 Ga0496107_0031040
410 Ga0496107_0078771
411 Ga0496108_0003784
412 Ga0496108_0007953
413 Ga0496108_0170378
414 Ga0496109_0001046
415 Ga0496110_0005021
416 Ga0496110_0006738
417 Ga0496110_0010769
418 Ga0496111_0004947
419 Ga0496111_0005501
420 Ga0496111_0061008
421 Ga0496112_0029776
422 Ga0496112_0037958
423 Ga0496112_0048601
424 Ga0496112_0068955
425 Ga0496112_0072295
426 Ga0496112_0108066
427 Ga0496112_0214224
428 Ga0496113_0002722
429 Ga0496113_0139018
430 Ga0496114_0092491
431 Ga0496114_0121185
432 Ga0496115_0012716
433 Ga0496115_0075706
434 Ga0501067_0016292
435 Ga0501072_0352913
436 nmdc:mga05p37_361034_c1
437 nmdc:mga05p37_7064_c1
438 nmdc:mga09592_36346_c1
439 nmdc:mga0qj67_28511_c1
440 nmdc:mga0qj67_79479_c1
441 nmdc:mga06r32_79841_c1
442 nmdc:mga0rr50_15257_c1
443 nmdc:mga0rr50_28419_c1
444 nmdc:mga0a205_71155_c2
445 Ga0495619_0006219
446 Ga0495619_0025069
447 Ga0466962_0004844
448 Ga0466962_0052814

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

250

403

0.94

PF13185

GAF_2

GAF domain

111

238

0.76

Map