F336276

General Info

Members Datasets Scaffolds Average Seq Length
224 118 448 289

Family's Representative Sequence

Representative Sequence 3300005293|Ga0065715_10163963|Ga0065715_101639632
Length 299
Sequence MIKSMTGFASLTQDDEAATITVTVRSVNHRFLDLQLRLPSSLNALESRLRARVQQRVARGRVEVSVSVQQRRAPMLEVELNEAFLHALNAALDRAREQGFVQGPMTPGDLLRFPQALAIKDRSDESPAVEDQSAALSDRVEEAVGAAVESLDTMRLREGGFLRAELDSRRQMLGELFDRVATVAEQGLETLRMRLLERVKELRADGLADEATVAQEIARYVGRSDITEEVVRFRGHLEHWRALTESAEPCGRKLDFLLQEMNREVNTTGSKAEGPAVSELIVTLKAELEKMREQVQNVE

Samples

Sample ID Description Type Environment
1 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
18 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
19 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
64 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
65 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
70 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
71 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
72 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
77 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
80 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
81 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
82 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
86 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
93 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
97 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
98 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
99 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
102 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
103 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
106 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
111 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
112 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
113 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
114 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
115 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
116 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
117 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
118 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.34
Nodule 0
Rhizoplane 5.8
Rhizosphere 92.86
Stem 0
Stem Tuber 0
Unclassified 2.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065715_10163963 3300005293 Bacteria 1603
2 Ga0065712_10068840 3300005290 Bacteria 8818
3 Ga0065712_10162523 3300005290 Unclassified 1292
4 Ga0065715_10028280 3300005293 Bacteria 1359
5 Ga0065715_10130710 3300005293 Bacteria 2021
6 Ga0070676_10272106 3300005328 Bacteria 1138
7 Ga0070683_100000919 3300005329 Bacteria 21853
8 Ga0070670_100031615 3300005331 Bacteria 4559
9 Ga0070670_100040034 3300005331 Bacteria 4031
10 Ga0070670_100110811 3300005331 Bacteria 2365
11 Ga0070660_100243926 3300005339 Bacteria 1464
12 Ga0070689_100401135 3300005340 Bacteria 1159
13 Ga0070661_100396757 3300005344 Bacteria 1090
14 Ga0070668_100122420 3300005347 Bacteria 2081
15 Ga0070669_100003029 3300005353 Bacteria 12086
16 Ga0070675_100128346 3300005354 Bacteria 2159
17 Ga0070671_100119049 3300005355 Bacteria 2222
18 Ga0070671_100199374 3300005355 Bacteria 1697
19 Ga0070671_100223473 3300005355 Bacteria 1597
20 Ga0070700_100057347 3300005441 Bacteria 2444
21 Ga0070700_100130473 3300005441 Bacteria 1695
22 Ga0070662_100122552 3300005457 Bacteria 1994
23 Ga0070684_100000069 3300005535 Bacteria 65354
24 Ga0070672_100088011 3300005543 Bacteria 2500
25 Ga0070672_100092312 3300005543 Bacteria 2444
26 Ga0070695_100126730 3300005545 Bacteria 1754
27 Ga0070696_100305762 3300005546 Bacteria 1219
28 Ga0070693_100240548 3300005547 Bacteria 1195
29 Ga0070665_100157915 3300005548 Bacteria 2270
30 Ga0070665_100350721 3300005548 Bacteria 1481
31 Ga0070664_100002485 3300005564 Bacteria 14857
32 Ga0068852_100347114 3300005616 Bacteria 1448
33 Ga0068859_100519107 3300005617 Bacteria 1286
34 Ga0068858_100037512 3300005842 Bacteria 4495
35 Ga0068862_100015342 3300005844 Bacteria 6363
36 Ga0075367_10048861 3300006178 Bacteria 2493
37 Ga0075367_10196074 3300006178 Bacteria 1261
38 Ga0075428_100000439 3300006844 Bacteria 41450
39 Ga0075428_100002759 3300006844 Bacteria 19117
40 Ga0075428_100006269 3300006844 Bacteria 13223
41 Ga0075428_100039073 3300006844 Bacteria 5223
42 Ga0075428_100320272 3300006844 Bacteria 1666
43 Ga0075428_100335591 3300006844 Bacteria 1624
44 Ga0075430_100000107 3300006846 Bacteria 49582
45 Ga0075430_100002354 3300006846 Bacteria 15705
46 Ga0075430_100027423 3300006846 Bacteria 4839
47 Ga0075430_100064828 3300006846 Bacteria 3070
48 Ga0075430_100100616 3300006846 Bacteria 2414
49 Ga0075430_100160233 3300006846 Bacteria 1873
50 Ga0075431_100009253 3300006847 Bacteria 9888
51 Ga0075431_100018814 3300006847 Bacteria 7037
52 Ga0075431_100047242 3300006847 Bacteria 4438
53 Ga0075431_100061855 3300006847 Bacteria 3863
54 Ga0075431_100071719 3300006847 Bacteria 3574
55 Ga0075433_10011258 3300006852 Bacteria 7201
56 Ga0075433_10036583 3300006852 Bacteria 4229
57 Ga0075433_10129777 3300006852 Bacteria 2239
58 Ga0075433_10382054 3300006852 Bacteria 1243
59 Ga0075429_100035133 3300006880 Bacteria 4358
60 Ga0075429_100052324 3300006880 Bacteria 3553
61 Ga0097620_100519206 3300006931 Bacteria 1286
62 Ga0075435_100047538 3300007076 Bacteria 3445
63 Ga0111539_10000799 3300009094 Bacteria 40975
64 Ga0111539_10001903 3300009094 Bacteria 27805
65 Ga0111539_10097031 3300009094 Bacteria 3462
66 Ga0111539_10136813 3300009094 Bacteria 2869
67 Ga0114129_10000076 3300009147 Bacteria 90985
68 Ga0114129_10001945 3300009147 Bacteria 28294
69 Ga0114129_10005999 3300009147 Bacteria 17217
70 Ga0114129_10017182 3300009147 Bacteria 10304
71 Ga0114129_10017611 3300009147 Bacteria 10169
72 Ga0114129_10063778 3300009147 Bacteria 5143
73 Ga0114129_10138383 3300009147 Bacteria 3340
74 Ga0114129_10404163 3300009147 Bacteria 1799
75 Ga0105249_10013036 3300009553 Bacteria 7336
76 Ga0105249_10352578 3300009553 Bacteria 1491
77 Ga0105249_10356857 3300009553 Bacteria 1482
78 Ga0157374_10577579 3300013296 Bacteria 1133
79 Ga0157377_10041766 3300014745 Bacteria 2545
80 Ga0207697_10001307 3300025315 Bacteria 13681
81 Ga0207697_10040329 3300025315 Bacteria 1917
82 Ga0207645_10150565 3300025907 Bacteria 1518
83 Ga0207649_10017403 3300025920 Bacteria 4072
84 Ga0207649_10352585 3300025920 Bacteria 1090
85 Ga0207681_10037657 3300025923 Bacteria 3198
86 Ga0207650_10044474 3300025925 Bacteria 3263
87 Ga0207650_10053491 3300025925 Bacteria 2993
88 Ga0207659_10069579 3300025926 Bacteria 2564
89 Ga0207644_10164100 3300025931 Bacteria 1729
90 Ga0207706_10336403 3300025933 Bacteria 1313
91 Ga0207706_10426069 3300025933 Bacteria 1149
92 Ga0207669_10087016 3300025937 Bacteria 2022
93 Ga0207704_10260181 3300025938 Bacteria 1308
94 Ga0207691_10032547 3300025940 Bacteria 4861
95 Ga0207691_10119313 3300025940 Bacteria 2339
96 Ga0207691_10124042 3300025940 Bacteria 2286
97 Ga0207661_10000496 3300025944 Bacteria 25296
98 Ga0207679_10013559 3300025945 Bacteria 5341
99 Ga0207651_10055261 3300025960 Bacteria 2726
100 Ga0207712_10021103 3300025961 Bacteria 4272
101 Ga0207712_10442467 3300025961 Bacteria 1101
102 Ga0207668_10086457 3300025972 Bacteria 2291
103 Ga0207708_10151821 3300026075 Bacteria 1824
104 Ga0207708_10167356 3300026075 Bacteria 1739
105 Ga0207648_10381116 3300026089 Bacteria 1275
106 Ga0207674_10125637 3300026116 Bacteria 2531
107 Ga0207683_10174341 3300026121 Bacteria 1948
108 Ga0207428_10008697 3300027907 Bacteria 9163
109 Ga0207428_10019485 3300027907 Bacteria 5784
110 Ga0207428_10080884 3300027907 Bacteria 2538
111 Ga0268266_10266473 3300028379 Bacteria 1589
112 Ga0268266_10394650 3300028379 Bacteria 1307
113 Ga0268265_10044067 3300028380 Bacteria 3320
114 Ga0307408_100003278 3300031548 Bacteria 11128
115 Ga0307408_100098890 3300031548 Bacteria 2219
116 Ga0307408_100211214 3300031548 Bacteria 1577
117 Ga0307408_100227193 3300031548 Bacteria 1526
118 Ga0307405_10015167 3300031731 Bacteria 4165
119 Ga0307413_10242865 3300031824 Bacteria 1331
120 Ga0307406_10258935 3300031901 Bacteria 1315
121 Ga0307412_10007811 3300031911 Bacteria 6087
122 Ga0307412_10026440 3300031911 Bacteria 3607
123 Ga0307409_100049260 3300031995 Bacteria 3211
124 Ga0307409_100683378 3300031995 Bacteria 1024
125 Ga0307416_100009859 3300032002 Bacteria 6280
126 Ga0307416_100076258 3300032002 Bacteria 2809
127 Ga0307416_100082994 3300032002 Bacteria 2717
128 Ga0307416_100137223 3300032002 Bacteria 2215
129 Ga0439450_004517 3300042008 Bacteria 2382
130 Ga0439434_0058890 3300042435 Bacteria 1199
131 Ga0439435_0000493 3300042436 Bacteria 6268
132 Ga0439435_0009860 3300042436 Bacteria 2252
133 Ga0439464_0008468 3300042439 Bacteria 2694
134 Ga0451577_0005764 3300042876 Bacteria 12558
135 Ga0453683_0051489 3300044673 Bacteria 2579
136 Ga0453684_0092205 3300044712 Bacteria 3736
137 Ga0453684_0150753 3300044712 Unclassified 2763
138 Ga0453684_0200840 3300044712 Bacteria 2324
139 Ga0453684_0213305 3300044712 Bacteria 2242
140 Ga0453684_0698020 3300044712 Bacteria 1103
141 Ga0495603_0076034 3300046455 Bacteria 1971
142 Ga0496101_0061989 3300048904 Bacteria 2718
143 Ga0496102_0013426 3300048905 Bacteria 7094
144 Ga0496102_0243156 3300048905 Bacteria 1697
145 Ga0496104_0010804 3300048907 Bacteria 8167
146 Ga0496105_0155616 3300048908 Bacteria 1877
147 Ga0496106_0032296 3300048909 Bacteria 3903
148 Ga0496106_0095085 3300048909 Bacteria 2304
149 Ga0496108_0004689 3300048911 Bacteria 11021
150 Ga0496108_0124808 3300048911 Bacteria 2210
151 Ga0496109_0008900 3300048912 Bacteria 8553
152 Ga0496110_0077141 3300048913 Bacteria 2964
153 Ga0496112_0002226 3300048915 Bacteria 15477
154 Ga0496113_0117412 3300048916 Bacteria 2077
155 Ga0501031_0090223 3300049568 Bacteria 1999
156 Ga0501036_0278599 3300049572 Bacteria 1400
157 Ga0501040_0052096 3300049576 Bacteria 2801
158 Ga0501041_0043978 3300049577 Bacteria 2715
159 Ga0501041_0127009 3300049577 Bacteria 1588
160 Ga0501042_0129289 3300049578 Bacteria 1820
161 Ga0501071_0008910 3300049587 Bacteria 6656
162 Ga0501071_0062056 3300049587 Bacteria 2708
163 Ga0501071_0115651 3300049587 Bacteria 1985
164 Ga0501072_0072288 3300049588 Bacteria 2726
165 Ga0501072_0124811 3300049588 Bacteria 2051
166 Ga0501072_0639843 3300049588 Bacteria 837
167 Ga0501073_0084526 3300049589 Bacteria 2208
168 Ga0501074_0020059 3300049590 Bacteria 4858
169 Ga0501074_0208861 3300049590 Bacteria 1391
170 Ga0501075_0041379 3300049591 Bacteria 3453
171 Ga0501075_0157988 3300049591 Bacteria 1729
172 Ga0501075_0443124 3300049591 Bacteria 990
173 Ga0501076_0008563 3300049592 Bacteria 7503
174 Ga0501076_0011714 3300049592 Bacteria 6546
175 Ga0501076_0095900 3300049592 Bacteria 2389
176 Ga0501077_0066336 3300049593 Bacteria 2289
177 Ga0501079_0228753 3300049741 Bacteria 1453
178 Ga0501080_0036924 3300049742 Bacteria 4562
179 Ga0501080_0112747 3300049742 Bacteria 2521
180 Ga0501080_0570578 3300049742 Bacteria 1007
181 Ga0501081_0083128 3300049743 Bacteria 2244
182 Ga0501081_0089527 3300049743 Bacteria 2163
183 Ga0501081_0199919 3300049743 Bacteria 1449
184 Ga0501045_0010908 3300049824 Bacteria 6364
185 Ga0501045_0090964 3300049824 Bacteria 2255
186 Ga0501045_0128353 3300049824 Bacteria 1884
187 nmdc:mga04h51_48431_c1 3300050495 Bacteria 1416
188 nmdc:mga05p37_10317_c1 3300050507 Bacteria 11093
189 nmdc:mga05p37_269579_c1 3300050507 Bacteria 2035
190 nmdc:mga05p37_287588_c1 3300050507 Bacteria 1958
191 nmdc:mga05p37_295407_c1 3300050507 Bacteria 1927
192 nmdc:mga05p37_8538_c1 3300050507 Bacteria 12107
193 nmdc:mga05p37_91_c1 3300050507 Bacteria 80826
194 nmdc:mga09592_111559_c1 3300050508 Bacteria 2346
195 nmdc:mga09592_267060_c1 3300050508 Bacteria 1484
196 nmdc:mga09592_575833_c1 3300050508 Unclassified 966
197 nmdc:mga09592_8188_c1 3300050508 Bacteria 8499
198 nmdc:mga09592_85077_c1 3300050508 Bacteria 2698
199 nmdc:mga0qj67_6557_c1 3300050509 Bacteria 8549
200 nmdc:mga0qj67_71085_c1 3300050509 Bacteria 2777
201 nmdc:mga06r32_33898_c1 3300050510 Bacteria 4812
202 nmdc:mga06r32_491068_c1 3300050510 Bacteria 1205
203 nmdc:mga06r32_50643_c1 3300050510 Bacteria 3972
204 nmdc:mga06r32_8031_c1 3300050510 Bacteria 9492
205 nmdc:mga08y16_12398_c1 3300050511 Bacteria 8966
206 nmdc:mga08y16_37325_c1 3300050511 Bacteria 5104
207 nmdc:mga08y16_62702_c1 3300050511 Bacteria 3882
208 nmdc:mga08y16_693268_c1 3300050511 Unclassified 1019
209 nmdc:mga0n895_156971_c1 3300050512 Bacteria 2306
210 nmdc:mga0n895_541865_c1 3300050512 Bacteria 1170
211 nmdc:mga0rr50_173317_c1 3300050513 Bacteria 1759
212 nmdc:mga0a205_111078_c1 3300050515 Bacteria 2640
213 nmdc:mga0a205_31730_c1 3300050515 Bacteria 5063
214 nmdc:mga0a205_766752_c1 3300050515 Bacteria 813
215 nmdc:mga0a205_8523_c1 3300050515 Bacteria 9323
216 Ga0501084_0041196 3300054114 Bacteria 3863
217 Ga0501084_0071987 3300054114 Bacteria 2895
218 Ga0590071_000241 3300059421 Bacteria 15993
219 Ga0590074_002403 3300059423 Bacteria 3073
220 Ga0590075_000084 3300059424 Bacteria 24119
221 Ga0590077_002782 3300059426 Bacteria 3682
222 Ga0590077_023475 3300059426 Unclassified 1320
223 Ga0501082_0312867 3300060353 Bacteria 1368
224 Ga0530510_0075211 3300061734 Bacteria 2453
225 Ga0065715_10163963
226 Ga0065712_10068840
227 Ga0065712_10162523
228 Ga0065715_10028280
229 Ga0065715_10130710
230 Ga0070676_10272106
231 Ga0070683_100000919
232 Ga0070670_100031615
233 Ga0070670_100040034
234 Ga0070670_100110811
235 Ga0070660_100243926
236 Ga0070689_100401135
237 Ga0070661_100396757
238 Ga0070668_100122420
239 Ga0070669_100003029
240 Ga0070675_100128346
241 Ga0070671_100119049
242 Ga0070671_100199374
243 Ga0070671_100223473
244 Ga0070700_100057347
245 Ga0070700_100130473
246 Ga0070662_100122552
247 Ga0070684_100000069
248 Ga0070672_100088011
249 Ga0070672_100092312
250 Ga0070695_100126730
251 Ga0070696_100305762
252 Ga0070693_100240548
253 Ga0070665_100157915
254 Ga0070665_100350721
255 Ga0070664_100002485
256 Ga0068852_100347114
257 Ga0068859_100519107
258 Ga0068858_100037512
259 Ga0068862_100015342
260 Ga0075367_10048861
261 Ga0075367_10196074
262 Ga0075428_100000439
263 Ga0075428_100002759
264 Ga0075428_100006269
265 Ga0075428_100039073
266 Ga0075428_100320272
267 Ga0075428_100335591
268 Ga0075430_100000107
269 Ga0075430_100002354
270 Ga0075430_100027423
271 Ga0075430_100064828
272 Ga0075430_100100616
273 Ga0075430_100160233
274 Ga0075431_100009253
275 Ga0075431_100018814
276 Ga0075431_100047242
277 Ga0075431_100061855
278 Ga0075431_100071719
279 Ga0075433_10011258
280 Ga0075433_10036583
281 Ga0075433_10129777
282 Ga0075433_10382054
283 Ga0075429_100035133
284 Ga0075429_100052324
285 Ga0097620_100519206
286 Ga0075435_100047538
287 Ga0111539_10000799
288 Ga0111539_10001903
289 Ga0111539_10097031
290 Ga0111539_10136813
291 Ga0114129_10000076
292 Ga0114129_10001945
293 Ga0114129_10005999
294 Ga0114129_10017182
295 Ga0114129_10017611
296 Ga0114129_10063778
297 Ga0114129_10138383
298 Ga0114129_10404163
299 Ga0105249_10013036
300 Ga0105249_10352578
301 Ga0105249_10356857
302 Ga0157374_10577579
303 Ga0157377_10041766
304 Ga0207697_10001307
305 Ga0207697_10040329
306 Ga0207645_10150565
307 Ga0207649_10017403
308 Ga0207649_10352585
309 Ga0207681_10037657
310 Ga0207650_10044474
311 Ga0207650_10053491
312 Ga0207659_10069579
313 Ga0207644_10164100
314 Ga0207706_10336403
315 Ga0207706_10426069
316 Ga0207669_10087016
317 Ga0207704_10260181
318 Ga0207691_10032547
319 Ga0207691_10119313
320 Ga0207691_10124042
321 Ga0207661_10000496
322 Ga0207679_10013559
323 Ga0207651_10055261
324 Ga0207712_10021103
325 Ga0207712_10442467
326 Ga0207668_10086457
327 Ga0207708_10151821
328 Ga0207708_10167356
329 Ga0207648_10381116
330 Ga0207674_10125637
331 Ga0207683_10174341
332 Ga0207428_10008697
333 Ga0207428_10019485
334 Ga0207428_10080884
335 Ga0268266_10266473
336 Ga0268266_10394650
337 Ga0268265_10044067
338 Ga0307408_100003278
339 Ga0307408_100098890
340 Ga0307408_100211214
341 Ga0307408_100227193
342 Ga0307405_10015167
343 Ga0307413_10242865
344 Ga0307406_10258935
345 Ga0307412_10007811
346 Ga0307412_10026440
347 Ga0307409_100049260
348 Ga0307409_100683378
349 Ga0307416_100009859
350 Ga0307416_100076258
351 Ga0307416_100082994
352 Ga0307416_100137223
353 Ga0439450_004517
354 Ga0439434_0058890
355 Ga0439435_0000493
356 Ga0439435_0009860
357 Ga0439464_0008468
358 Ga0451577_0005764
359 Ga0453683_0051489
360 Ga0453684_0092205
361 Ga0453684_0150753
362 Ga0453684_0200840
363 Ga0453684_0213305
364 Ga0453684_0698020
365 Ga0495603_0076034
366 Ga0496101_0061989
367 Ga0496102_0013426
368 Ga0496102_0243156
369 Ga0496104_0010804
370 Ga0496105_0155616
371 Ga0496106_0032296
372 Ga0496106_0095085
373 Ga0496108_0004689
374 Ga0496108_0124808
375 Ga0496109_0008900
376 Ga0496110_0077141
377 Ga0496112_0002226
378 Ga0496113_0117412
379 Ga0501031_0090223
380 Ga0501036_0278599
381 Ga0501040_0052096
382 Ga0501041_0043978
383 Ga0501041_0127009
384 Ga0501042_0129289
385 Ga0501071_0008910
386 Ga0501071_0062056
387 Ga0501071_0115651
388 Ga0501072_0072288
389 Ga0501072_0124811
390 Ga0501072_0639843
391 Ga0501073_0084526
392 Ga0501074_0020059
393 Ga0501074_0208861
394 Ga0501075_0041379
395 Ga0501075_0157988
396 Ga0501075_0443124
397 Ga0501076_0008563
398 Ga0501076_0011714
399 Ga0501076_0095900
400 Ga0501077_0066336
401 Ga0501079_0228753
402 Ga0501080_0036924
403 Ga0501080_0112747
404 Ga0501080_0570578
405 Ga0501081_0083128
406 Ga0501081_0089527
407 Ga0501081_0199919
408 Ga0501045_0010908
409 Ga0501045_0090964
410 Ga0501045_0128353
411 nmdc:mga04h51_48431_c1
412 nmdc:mga05p37_10317_c1
413 nmdc:mga05p37_269579_c1
414 nmdc:mga05p37_287588_c1
415 nmdc:mga05p37_295407_c1
416 nmdc:mga05p37_8538_c1
417 nmdc:mga05p37_91_c1
418 nmdc:mga09592_111559_c1
419 nmdc:mga09592_267060_c1
420 nmdc:mga09592_575833_c1
421 nmdc:mga09592_8188_c1
422 nmdc:mga09592_85077_c1
423 nmdc:mga0qj67_6557_c1
424 nmdc:mga0qj67_71085_c1
425 nmdc:mga06r32_33898_c1
426 nmdc:mga06r32_491068_c1
427 nmdc:mga06r32_50643_c1
428 nmdc:mga06r32_8031_c1
429 nmdc:mga08y16_12398_c1
430 nmdc:mga08y16_37325_c1
431 nmdc:mga08y16_62702_c1
432 nmdc:mga08y16_693268_c1
433 nmdc:mga0n895_156971_c1
434 nmdc:mga0n895_541865_c1
435 nmdc:mga0rr50_173317_c1
436 nmdc:mga0a205_111078_c1
437 nmdc:mga0a205_31730_c1
438 nmdc:mga0a205_766752_c1
439 nmdc:mga0a205_8523_c1
440 Ga0501084_0041196
441 Ga0501084_0071987
442 Ga0590071_000241
443 Ga0590074_002403
444 Ga0590075_000084
445 Ga0590077_002782
446 Ga0590077_023475
447 Ga0501082_0312867
448 Ga0530510_0075211

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08340

YicC-like_C

Endoribonuclease YicC-like, C-terminal

180

299

0.97

PF03755

YicC-like_N

Endoribonuclease YicC-like, N-terminal region

2

164

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
8hvj-assembly1.cif.gz_A-2 the structure of the e. coli mrna endoonuclease yicc 0.7254 8 281
8hvj-assembly1.cif.gz_B-2 the structure of the e. coli mrna endoonuclease yicc 0.6988 11 281
8hvj-assembly1.cif.gz_B-2 the structure of the e. coli mrna endoonuclease yicc 0.6965 11 281
8b6w-assembly1.cif.gz_A mpf2ba1 pore 0.6859 1 26
8hvj-assembly1.cif.gz_C-2 the structure of the e. coli mrna endoonuclease yicc 0.641 22 279
ID Description Score Start End Superfamily
af_P23839_2_154_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.78 3 159 3.30.230.10
4dmwA01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.7725 225 279 1.20.58.1190
3ss1A01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.7693 224 279 1.20.58.1190
af_P23839_2_154_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.7664 3 159 3.30.230.10
4oqeB02 Mainly Beta;Single Sheet;S-adenosyl-L-methionine-dependent methyltransferases;CAC2371-like domains 0.7402 7 30 2.20.130.10
ID Description Score Start End GO Terms
AF-A0A661DCW2-F1-model_v4 Endoribonuclease YicC-like N-terminal domain-containing protein 0.9455 5 72 GO:0004521
AF-A0A2E3VZI1-F1-model_v4 Endoribonuclease YicC-like N-terminal domain-containing protein 0.9279 4 69 GO:0004521
AF-A0A0K9CPA0-F1-model_v4 Endoribonuclease YicC-like N-terminal domain-containing protein 0.9234 3 69 GO:0004521
AF-A0A356KTU5-F1-model_v4 Endoribonuclease YicC-like N-terminal domain-containing protein 0.9169 4 73 GO:0004521
AF-A0A5N8HCJ4-F1-model_v4 Endoribonuclease YicC-like N-terminal domain-containing protein 0.9151 1 73 GO:0004521

Map