F336059

General Info

Members Datasets Scaffolds Average Seq Length
223 183 446 235

Family's Representative Sequence

Representative Sequence 3300050491|nmdc:mga00v17_62601_c1|nmdc:mga00v17_62601_c1_1439_2242
Length 267
Sequence MLRRRSTRSIFEQIVLLLNDRICCSSEMAREGSMTAAAVPPSQTLSRGIRILESLADAREPLSIDEVARRLGVHRSVAYRLLRTLEDHGLVTRDAAGRIQLGARMAALAAGVAHDLQAEALPELTAVANELGTTCFLVVLDHDECVTLVSVEPRHAVASVAQRPGTRHPVTVGAPGKAILSVLPRESWPSEVSDSVRADMTDAAARGFATSHDEVIPSLRSVSVPLVVRGRQPSAIAVVYVASDHEPAEIAARLQRSAAVIRDALGG

Samples

Sample ID Description Type Environment
1 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
2 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
5 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
6 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
7 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
17 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
43 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
44 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
45 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
46 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
47 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
64 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
65 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
92 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
93 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
94 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
95 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
96 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
97 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
98 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
99 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
100 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
101 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
102 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
103 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
104 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
105 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
106 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
107 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
108 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
109 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
110 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
111 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
112 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
113 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
114 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
115 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
116 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
117 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
118 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
119 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
120 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
121 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
122 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
123 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
124 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
125 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
126 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
127 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
135 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
139 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
140 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
141 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
142 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
143 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
144 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
145 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
146 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
147 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
148 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
149 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
150 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
151 2643221546 Microbacterium sp. Root53 Isolate Unclassified
152 2643221553 Microbacterium sp. Root553 Isolate Unclassified
153 2643221566 Microbacterium sp. Root166 Isolate Unclassified
154 2643221575 Microbacterium sp. Root61 Isolate Unclassified
155 2643221597 Microbacterium sp. Root180 Isolate Unclassified
156 2643221630 Microbacterium sp. Root322 Isolate Unclassified
157 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
158 2808606372 Agromyces sp. 23-23 Isolate Unclassified
159 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
160 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
161 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
162 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
163 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
164 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
165 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
166 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
167 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
168 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
169 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
170 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
171 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
172 2919395869 Microbacterium resistens 2980 Isolate Unclassified
173 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
174 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
175 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
176 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
177 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
178 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
179 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
180 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
181 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
182 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
183 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.86
Metatranscriptomes 0.9
Isolates 15.25

Biome Distribution

Category Percentage (%)
Aerial Root 0.45
Bulb 0
Endosphere 7.17
Nodule 0
Rhizoplane 11.21
Rhizosphere 64.57
Stem 0
Stem Tuber 0
Unclassified 3.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga00v17_62601_c1 3300050491 Bacteria 2289
2 JGI24738J21930_10019051 3300002075 Bacteria 1433
3 Ga0006562J51391_1121911 3300003578 Bacteria 18316
4 Ga0006562J51391_1121913 3300003578 Bacteria 10484
5 Ga0055532_1009627 3300003758 Bacteria 1170
6 Ga0055527_1000017 3300003760 Bacteria 242362
7 Ga0055542_1000510 3300003762 Bacteria 35439
8 Ga0055529_1000093 3300003763 Bacteria 137160
9 Ga0068869_100012937 3300005334 Bacteria 5529
10 Ga0068869_100785414 3300005334 Bacteria 817
11 Ga0070660_100494168 3300005339 Bacteria 1018
12 Ga0070669_100062576 3300005353 Bacteria 2737
13 Ga0070671_100357498 3300005355 Bacteria 1247
14 Ga0070674_100388452 3300005356 Bacteria 1137
15 Ga0070659_100202749 3300005366 Bacteria 1633
16 Ga0070709_10032704 3300005434 Bacteria 3138
17 Ga0070713_100192525 3300005436 Bacteria 1838
18 Ga0070710_10125904 3300005437 Bacteria 1556
19 Ga0070711_100021960 3300005439 Bacteria 4131
20 Ga0070700_100188733 3300005441 Bacteria 1440
21 Ga0070663_100442794 3300005455 Bacteria 1069
22 Ga0070678_100028603 3300005456 Bacteria 3804
23 Ga0070685_10104054 3300005466 Bacteria 1738
24 Ga0070697_100345288 3300005536 Bacteria 1285
25 Ga0068853_100243011 3300005539 Bacteria 1650
26 Ga0070695_100030186 3300005545 Bacteria 3373
27 Ga0070696_100032947 3300005546 Bacteria 3557
28 Ga0070693_100162473 3300005547 Bacteria 1423
29 Ga0070665_101114486 3300005548 Unclassified 801
30 Ga0070704_100060161 3300005549 Bacteria 2713
31 Ga0070702_100147380 3300005615 Bacteria 1507
32 Ga0068852_100295021 3300005616 Bacteria 1567
33 Ga0068864_100269530 3300005618 Bacteria 1586
34 Ga0068861_100008872 3300005719 Bacteria 6929
35 Ga0068861_100290289 3300005719 Bacteria 1412
36 Ga0068870_10151943 3300005840 Unclassified 1365
37 Ga0068863_100106181 3300005841 Bacteria 2672
38 Ga0068858_100136476 3300005842 Bacteria 2301
39 Ga0068860_100219587 3300005843 Bacteria 1846
40 Ga0068862_100054988 3300005844 Bacteria 3409
41 Ga0081540_1004518 3300005983 Bacteria 10561
42 Ga0075365_10017402 3300006038 Bacteria 4397
43 Ga0075363_100009183 3300006048 Bacteria 4643
44 Ga0075364_10219995 3300006051 Bacteria 1289
45 Ga0070716_100004335 3300006173 Bacteria 6767
46 Ga0070712_100110999 3300006175 Bacteria 2046
47 Ga0075369_10090794 3300006186 Bacteria 1363
48 Ga0075370_10039377 3300006353 Bacteria 2662
49 Ga0068871_100294621 3300006358 Bacteria 1423
50 Ga0075436_100091637 3300006914 Bacteria 2113
51 Ga0111539_10048661 3300009094 Bacteria 5061
52 Ga0105245_10027088 3300009098 Bacteria 5049
53 Ga0105243_10009314 3300009148 Bacteria 7490
54 Ga0105241_10103640 3300009174 Bacteria 2266
55 Ga0105237_10210738 3300009545 Bacteria 1943
56 Ga0105237_10543904 3300009545 Unclassified 1168
57 Ga0105238_10081018 3300009551 Bacteria 3235
58 Ga0105249_10066088 3300009553 Bacteria 3329
59 Ga0105246_10070669 3300011119 Bacteria 2456
60 Ga0105246_10297092 3300011119 Bacteria 1302
61 Ga0157370_10161805 3300013104 Bacteria 2082
62 Ga0157370_10220127 3300013104 Bacteria 1758
63 Ga0157369_10097745 3300013105 Bacteria 3132
64 Ga0157374_10094233 3300013296 Bacteria 2861
65 Ga0157378_10494235 3300013297 Bacteria 1221
66 Ga0163162_10181349 3300013306 Bacteria 2232
67 Ga0157372_10879455 3300013307 Bacteria 1040
68 Ga0157375_10065690 3300013308 Bacteria 3617
69 Ga0157375_10952547 3300013308 Bacteria 1000
70 Ga0157380_10155895 3300014326 Bacteria 1979
71 Ga0157380_10181131 3300014326 Bacteria 1851
72 Ga0157380_10757710 3300014326 Bacteria 983
73 Ga0209646_1000816 3300025246 Bacteria 10550
74 Ga0207692_10011761 3300025898 Bacteria 3738
75 Ga0207642_10071237 3300025899 Bacteria 1655
76 Ga0207688_10114012 3300025901 Bacteria 1572
77 Ga0207680_10028936 3300025903 Bacteria 3106
78 Ga0207699_10188571 3300025906 Bacteria 1390
79 Ga0207693_10009551 3300025915 Bacteria 7899
80 Ga0207663_10022769 3300025916 Bacteria 3586
81 Ga0207657_10071580 3300025919 Bacteria 2936
82 Ga0207681_10266181 3300025923 Bacteria 1344
83 Ga0207687_10124676 3300025927 Bacteria 1932
84 Ga0207706_10053828 3300025933 Bacteria 3552
85 Ga0207670_10208924 3300025936 Bacteria 1487
86 Ga0207669_10202988 3300025937 Bacteria 1441
87 Ga0207669_10280900 3300025937 Bacteria 1256
88 Ga0207665_10000601 3300025939 Bacteria 24179
89 Ga0207689_10023670 3300025942 Bacteria 5151
90 Ga0207689_10642310 3300025942 Bacteria 894
91 Ga0207677_10028551 3300026023 Bacteria 3530
92 Ga0207639_10457004 3300026041 Bacteria 1160
93 Ga0207678_10094918 3300026067 Bacteria 2549
94 Ga0207708_10116851 3300026075 Bacteria 2075
95 Ga0207641_10084666 3300026088 Bacteria 2761
96 Ga0207648_10498920 3300026089 Unclassified 1113
97 Ga0207676_10130856 3300026095 Bacteria 2133
98 Ga0207675_100020285 3300026118 Bacteria 6197
99 Ga0207675_100215133 3300026118 Bacteria 1850
100 Ga0207683_10051138 3300026121 Bacteria 3620
101 Ga0268265_10154316 3300028380 Bacteria 1941
102 Ga0307408_100091289 3300031548 Bacteria 2300
103 Ga0307408_100129538 3300031548 Bacteria 1967
104 Ga0307408_100602011 3300031548 Bacteria 977
105 Ga0307413_10116756 3300031824 Bacteria 1799
106 Ga0307410_10082184 3300031852 Bacteria 2266
107 Ga0307406_10002173 3300031901 Bacteria 10677
108 Ga0307407_10407544 3300031903 Bacteria 977
109 Ga0307409_100034337 3300031995 Bacteria 3703
110 Ga0307409_100529317 3300031995 Bacteria 1153
111 Ga0307416_100298340 3300032002 Bacteria 1600
112 Ga0307416_100991786 3300032002 Bacteria 943
113 Ga0307414_10095390 3300032004 Bacteria 2223
114 Ga0307414_10551561 3300032004 Bacteria 1027
115 Ga0307415_100588409 3300032126 Bacteria 988
116 Ga0307415_100610895 3300032126 Bacteria 972
117 Ga0373930_0001138 3300034816 Bacteria 3871
118 Ga0373940_0009362 3300035088 Bacteria 2276
119 Ga0373962_0073192 3300035242 Bacteria 1028
120 Ga0373931_0018716 3300035691 Bacteria 3446
121 Ga0373931_0360158 3300035691 Unclassified 912
122 Ga0395901_0095145 3300038443 Bacteria 3121
123 Ga0451841_0600261 3300041498 Bacteria 1283
124 Ga0451853_0259410 3300041512 Bacteria 1260
125 Ga0439449_0148828 3300042007 Bacteria 873
126 Ga0466965_0250796 3300044683 Bacteria 949
127 Ga0466968_0009230 3300044735 Bacteria 3793
128 Ga0466970_0000030 3300044765 Bacteria 51701
129 Ga0466970_0038491 3300044765 Bacteria 2537
130 Ga0466960_0140606 3300044901 Bacteria 1282
131 Ga0466960_0230540 3300044901 Bacteria 1022
132 Ga0466967_0472494 3300045976 Bacteria 1228
133 Ga0466967_0842040 3300045976 Bacteria 911
134 Ga0495627_000309 3300046453 Bacteria 48100
135 Ga0495641_0194462 3300046461 Unclassified 909
136 Ga0495580_0137876 3300046472 Bacteria 1692
137 Ga0495645_0010847 3300046543 Bacteria 6403
138 Ga0495624_0118715 3300046690 Bacteria 1625
139 Ga0496100_0213266 3300048903 Bacteria 1413
140 Ga0496101_0196011 3300048904 Bacteria 1560
141 Ga0496102_0561581 3300048905 Bacteria 1064
142 Ga0496103_0207347 3300048906 Bacteria 1261
143 Ga0496104_0035204 3300048907 Bacteria 4675
144 Ga0496104_0105003 3300048907 Bacteria 2707
145 Ga0496105_0024584 3300048908 Bacteria 4895
146 Ga0496105_0236451 3300048908 Bacteria 1483
147 Ga0496106_0140621 3300048909 Bacteria 1898
148 Ga0496107_0092235 3300048910 Bacteria 2214
149 Ga0496108_0000034 3300048911 Bacteria 157614
150 Ga0496108_0031922 3300048911 Bacteria 4371
151 Ga0496108_0721750 3300048911 Bacteria 863
152 Ga0496109_0013417 3300048912 Bacteria 7106
153 Ga0496109_0025953 3300048912 Bacteria 5222
154 Ga0496111_0089455 3300048914 Bacteria 2255
155 Ga0496111_0325876 3300048914 Bacteria 1137
156 Ga0496114_0020004 3300048917 Bacteria 5430
157 Ga0496114_0025397 3300048917 Bacteria 4841
158 Ga0496114_0075547 3300048917 Bacteria 2838
159 Ga0496114_0133988 3300048917 Bacteria 2141
160 Ga0496115_0023221 3300048918 Bacteria 4812
161 Ga0496115_0042327 3300048918 Bacteria 3628
162 Ga0496115_0073524 3300048918 Bacteria 2775
163 Ga0496115_0169694 3300048918 Bacteria 1804
164 Ga0496117_0001961 3300048920 Bacteria 27354
165 Ga0496117_0152604 3300048920 Bacteria 1365
166 Ga0496119_0000605 3300048922 Bacteria 48474
167 Ga0496122_0021627 3300048925 Bacteria 5750
168 Ga0496122_0050228 3300048925 Bacteria 3183
169 Ga0496122_0094095 3300048925 Bacteria 2030
170 Ga0496125_0025958 3300048928 Bacteria 5352
171 Ga0496126_0005770 3300048929 Bacteria 13999
172 Ga0496126_0025018 3300048929 Bacteria 5754
173 Ga0501038_0465047 3300049574 Bacteria 971
174 Ga0501038_0478129 3300049574 Bacteria 955
175 Ga0501046_0524912 3300049580 Bacteria 846
176 Ga0501047_0092429 3300049581 Bacteria 2904
177 Ga0501070_0001028 3300049586 Bacteria 25074
178 Ga0501044_0005377 3300049823 Bacteria 14222
179 nmdc:mga03n38_163080_c1 3300050490 Bacteria 1130
180 nmdc:mga00v17_107900_c1 3300050491 Bacteria 1764
181 nmdc:mga0yw44_147710_c1 3300050492 Bacteria 1532
182 nmdc:mga06z11_255109_c1 3300050494 Bacteria 1034
183 nmdc:mga07m45_13569_c1 3300050496 Bacteria 4327
184 nmdc:mga08y16_162605_c1 3300050511 Bacteria 2319
185 nmdc:mga0n895_95990_c1 3300050512 Bacteria 2970
186 nmdc:mga0rr50_134256_c1 3300050513 Bacteria 1985
187 nmdc:mga08x19_171395_c1 3300050514 Unclassified 1478
188 nmdc:mga0sz30_86752_c1 3300050516 Bacteria 1359
189 Ga0501082_0589260 3300060353 Bacteria 973
190 2643734935 2643221542 Bacteria 3563959
191 2643753121 2643221546 Bacteria 2910897
192 2643783453 2643221553 Bacteria 3544260
193 2643848846 2643221566 Bacteria 3460379
194 2643888369 2643221575 Bacteria 4022601
195 2643995011 2643221597 Bacteria 3347721
196 2644173095 2643221630 Bacteria 3601215
197 2774400389 2773857763 Bacteria 4180068
198 2808899358 2808606372 Bacteria 4649509
199 2809226707 2808606447 Bacteria 3572005
200 2812322286 2811994872 Bacteria 4121241
201 2821269230 2821268502 Bacteria 3750023
202 2833710133 2833709550 Bacteria 4008291
203 2852632921 2852632344 Bacteria 3463163
204 2852665756 2852663356 Bacteria 4090475
205 2857479179 2857479173 Bacteria 2469263
206 2857634153 2857632687 Bacteria 2448521
207 2857724766 2857723135 Bacteria 4217853
208 2870804165 2870801768 Bacteria 2710986
209 2870806019 2870804320 Bacteria 2552467
210 2897564277 2897561785 Bacteria 3256946
211 2904510176 2904509784 Bacteria 3520416
212 2919399488 2919395869 Bacteria 3704152
213 2919445439 2919443155 Bacteria 4072969
214 2939663284 2939660829 Bacteria 3784848
215 2946043300 2946041624 Bacteria 4191385
216 2946081723 2946080515 Bacteria 4310960
217 2977230507 2977228692 Bacteria 3450105
218 2977239309 2977236895 Bacteria 3569373
219 2977265770 2977264416 Bacteria 3750737
220 2984542908 2984542743 Bacteria 3569378
221 8004215414 8004212874 Bacteria 2861420
222 8016254832 8016254467 Bacteria 3797036
223 8045832912 8045830549 Bacteria 4444727
224 nmdc:mga00v17_62601_c1
225 JGI24738J21930_10019051
226 Ga0006562J51391_1121911
227 Ga0006562J51391_1121913
228 Ga0055532_1009627
229 Ga0055527_1000017
230 Ga0055542_1000510
231 Ga0055529_1000093
232 Ga0068869_100012937
233 Ga0068869_100785414
234 Ga0070660_100494168
235 Ga0070669_100062576
236 Ga0070671_100357498
237 Ga0070674_100388452
238 Ga0070659_100202749
239 Ga0070709_10032704
240 Ga0070713_100192525
241 Ga0070710_10125904
242 Ga0070711_100021960
243 Ga0070700_100188733
244 Ga0070663_100442794
245 Ga0070678_100028603
246 Ga0070685_10104054
247 Ga0070697_100345288
248 Ga0068853_100243011
249 Ga0070695_100030186
250 Ga0070696_100032947
251 Ga0070693_100162473
252 Ga0070665_101114486
253 Ga0070704_100060161
254 Ga0070702_100147380
255 Ga0068852_100295021
256 Ga0068864_100269530
257 Ga0068861_100008872
258 Ga0068861_100290289
259 Ga0068870_10151943
260 Ga0068863_100106181
261 Ga0068858_100136476
262 Ga0068860_100219587
263 Ga0068862_100054988
264 Ga0081540_1004518
265 Ga0075365_10017402
266 Ga0075363_100009183
267 Ga0075364_10219995
268 Ga0070716_100004335
269 Ga0070712_100110999
270 Ga0075369_10090794
271 Ga0075370_10039377
272 Ga0068871_100294621
273 Ga0075436_100091637
274 Ga0111539_10048661
275 Ga0105245_10027088
276 Ga0105243_10009314
277 Ga0105241_10103640
278 Ga0105237_10210738
279 Ga0105237_10543904
280 Ga0105238_10081018
281 Ga0105249_10066088
282 Ga0105246_10070669
283 Ga0105246_10297092
284 Ga0157370_10161805
285 Ga0157370_10220127
286 Ga0157369_10097745
287 Ga0157374_10094233
288 Ga0157378_10494235
289 Ga0163162_10181349
290 Ga0157372_10879455
291 Ga0157375_10065690
292 Ga0157375_10952547
293 Ga0157380_10155895
294 Ga0157380_10181131
295 Ga0157380_10757710
296 Ga0209646_1000816
297 Ga0207692_10011761
298 Ga0207642_10071237
299 Ga0207688_10114012
300 Ga0207680_10028936
301 Ga0207699_10188571
302 Ga0207693_10009551
303 Ga0207663_10022769
304 Ga0207657_10071580
305 Ga0207681_10266181
306 Ga0207687_10124676
307 Ga0207706_10053828
308 Ga0207670_10208924
309 Ga0207669_10202988
310 Ga0207669_10280900
311 Ga0207665_10000601
312 Ga0207689_10023670
313 Ga0207689_10642310
314 Ga0207677_10028551
315 Ga0207639_10457004
316 Ga0207678_10094918
317 Ga0207708_10116851
318 Ga0207641_10084666
319 Ga0207648_10498920
320 Ga0207676_10130856
321 Ga0207675_100020285
322 Ga0207675_100215133
323 Ga0207683_10051138
324 Ga0268265_10154316
325 Ga0307408_100091289
326 Ga0307408_100129538
327 Ga0307408_100602011
328 Ga0307413_10116756
329 Ga0307410_10082184
330 Ga0307406_10002173
331 Ga0307407_10407544
332 Ga0307409_100034337
333 Ga0307409_100529317
334 Ga0307416_100298340
335 Ga0307416_100991786
336 Ga0307414_10095390
337 Ga0307414_10551561
338 Ga0307415_100588409
339 Ga0307415_100610895
340 Ga0373930_0001138
341 Ga0373940_0009362
342 Ga0373962_0073192
343 Ga0373931_0018716
344 Ga0373931_0360158
345 Ga0395901_0095145
346 Ga0451841_0600261
347 Ga0451853_0259410
348 Ga0439449_0148828
349 Ga0466965_0250796
350 Ga0466968_0009230
351 Ga0466970_0000030
352 Ga0466970_0038491
353 Ga0466960_0140606
354 Ga0466960_0230540
355 Ga0466967_0472494
356 Ga0466967_0842040
357 Ga0495627_000309
358 Ga0495641_0194462
359 Ga0495580_0137876
360 Ga0495645_0010847
361 Ga0495624_0118715
362 Ga0496100_0213266
363 Ga0496101_0196011
364 Ga0496102_0561581
365 Ga0496103_0207347
366 Ga0496104_0035204
367 Ga0496104_0105003
368 Ga0496105_0024584
369 Ga0496105_0236451
370 Ga0496106_0140621
371 Ga0496107_0092235
372 Ga0496108_0000034
373 Ga0496108_0031922
374 Ga0496108_0721750
375 Ga0496109_0013417
376 Ga0496109_0025953
377 Ga0496111_0089455
378 Ga0496111_0325876
379 Ga0496114_0020004
380 Ga0496114_0025397
381 Ga0496114_0075547
382 Ga0496114_0133988
383 Ga0496115_0023221
384 Ga0496115_0042327
385 Ga0496115_0073524
386 Ga0496115_0169694
387 Ga0496117_0001961
388 Ga0496117_0152604
389 Ga0496119_0000605
390 Ga0496122_0021627
391 Ga0496122_0050228
392 Ga0496122_0094095
393 Ga0496125_0025958
394 Ga0496126_0005770
395 Ga0496126_0025018
396 Ga0501038_0465047
397 Ga0501038_0478129
398 Ga0501046_0524912
399 Ga0501047_0092429
400 Ga0501070_0001028
401 Ga0501044_0005377
402 nmdc:mga03n38_163080_c1
403 nmdc:mga00v17_107900_c1
404 nmdc:mga0yw44_147710_c1
405 nmdc:mga06z11_255109_c1
406 nmdc:mga07m45_13569_c1
407 nmdc:mga08y16_162605_c1
408 nmdc:mga0n895_95990_c1
409 nmdc:mga0rr50_134256_c1
410 nmdc:mga08x19_171395_c1
411 nmdc:mga0sz30_86752_c1
412 Ga0501082_0589260
413 2643734935
414 2643753121
415 2643783453
416 2643848846
417 2643888369
418 2643995011
419 2644173095
420 2774400389
421 2808899358
422 2809226707
423 2812322286
424 2821269230
425 2833710133
426 2852632921
427 2852665756
428 2857479179
429 2857634153
430 2857724766
431 2870804165
432 2870806019
433 2897564277
434 2904510176
435 2919399488
436 2919445439
437 2939663284
438 2946043300
439 2946081723
440 2977230507
441 2977239309
442 2977265770
443 2984542908
444 8004215414
445 8016254832
446 8045832912

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09339

HTH_IclR

IclR helix-turn-helix domain

44

95

0.98

PF12840

HTH_20

Helix-turn-helix domain

41

94

0.96

PF12802

MarR_2

MarR family

48

98

0.92

PF01978

TrmB

Sugar-specific transcriptional regulator TrmB

47

102

0.88

PF01047

MarR

MarR family

46

96

0.86

PF01614

IclR

Bacterial transcriptional regulator

109

263

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ija-assembly1.cif.gz_B structure of s. aureus methicillin resistance factor mecr2 0.9752 20 74
1j75-assembly1.cif.gz_A-2 crystal structure of the dna-binding domain zalpha of dlm-1 bound to z-dna 0.9302 20 75
7c0i-assembly1.cif.gz_A crystal structure of chimeric mutant of e3l in complex with z-dna 0.9281 20 74
4wcg-assembly1.cif.gz_B the binding mode of cyprinid herpesvirus3 orf112-zalpha to z-dna 0.9278 19 74
4awx-assembly1.cif.gz_B moonlighting functions of feoc in the regulation of ferrous iron transport in feo 0.9257 21 75
ID Description Score Start End Superfamily
4ijaB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.974 20 75 1.10.10.10
2xrnA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9665 18 76 1.10.10.10
af_P64638_1_78_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9579 21 67 1.10.10.10
2xroF01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9521 18 81 1.10.10.10
af_P71977_12_75_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9521 15 76 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6N9XLM5-F1-model_v4 deleted 0.9493 6 84
AF-A0A2W4KXZ4-F1-model_v4 IclR-ED domain-containing protein 0.912 87 232 GO:0003677
GO:0003700
GO:0045892
AF-A0A0K8QB67-F1-model_v4 HTH-type transcriptional repressor AllR 0.889 89 227 GO:0003677
GO:0003700
GO:0045892
AF-A0A6N7IJJ4-F1-model_v4 Helix-turn-helix domain-containing protein 0.8865 16 235 GO:0003677
GO:0003700
GO:0045892
AF-A0A8B0S8X1-F1-model_v4 deleted 0.8807 65 229

Map