F335668

General Info

Members Datasets Scaffolds Average Seq Length
223 38 446 229

Family's Representative Sequence

Representative Sequence 3300025910|Ga0207684_10137551|Ga0207684_101375514
Length 235
Sequence MATRSKRYRAAAGAIDRNRRYPLDEAIRTLLASGGPTKFDETVELAVRLGVDPRQADQNVRGTVVLPHGTGKAVRVLVFAKGEKAKEATEAGADHVGAEELAKKIQDEQWLEFDTAIATPDMMGAVGRLGKILGPRGLMPNPKVGTVTFDVGKAIREVKAGKVEFRVEKAGIVHVPIGKRSFGAERLLENAQALLGSLLRAKPAAAKGNYVQSVAVATTMSPGVRIDPATVRTAA

Samples

Sample ID Description Type Environment
1 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
3 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
4 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
5 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
6 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
7 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
8 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
9 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
10 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
11 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
12 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
13 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
14 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
15 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
21 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
22 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
23 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
24 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
25 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
26 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
27 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
28 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
29 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
30 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
31 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
32 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
33 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
34 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
35 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
36 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
37 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere
38 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 68.61
Metatranscriptomes 30.49
Isolates 0.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 82.96
Stem 0
Stem Tuber 0
Unclassified 2.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207684_10137551 3300025910 Bacteria 2098
2 Ga0070699_100372434 3300005518 Bacteria 1288
3 Ga0068859_100571783 3300005617 Bacteria 1224
4 Ga0097620_100571747 3300006931 Bacteria 1224
5 Ga0207646_10115472 3300025922 Bacteria 2411
6 Ga0265318_10011693 3300028577 Bacteria 3766
7 Ga0316575_10000368 3300031665 Bacteria 12825
8 Ga0316575_10011870 3300031665 Bacteria 3231
9 Ga0316575_10014299 3300031665 Bacteria 2977
10 Ga0316575_10020410 3300031665 Bacteria 2542
11 Ga0316575_10034566 3300031665 Bacteria 1985
12 Ga0316575_10064218 3300031665 Bacteria 1470
13 Ga0316575_10092847 3300031665 Unclassified 1223
14 Ga0316575_10125986 3300031665 Bacteria 1049
15 Ga0316575_10141869 3300031665 Bacteria 989
16 Ga0316579_10002337 3300031691 Bacteria 7164
17 Ga0316579_10002513 3300031691 Bacteria 6937
18 Ga0316579_10010160 3300031691 Bacteria 3972
19 Ga0316579_10018503 3300031691 Bacteria 3067
20 Ga0316579_10031447 3300031691 Bacteria 2430
21 Ga0316579_10151585 3300031691 Bacteria 1119
22 Ga0316576_10003381 3300031727 Bacteria 9328
23 Ga0316576_10009654 3300031727 Bacteria 6241
24 Ga0316576_10037223 3300031727 Bacteria 3482
25 Ga0316576_10048913 3300031727 Bacteria 3069
26 Ga0316576_10087676 3300031727 Bacteria 2316
27 Ga0316576_10092733 3300031727 Bacteria 2251
28 Ga0316576_10099427 3300031727 Bacteria 2173
29 Ga0316576_10116397 3300031727 Bacteria 2006
30 Ga0316576_10178242 3300031727 Bacteria 1603
31 Ga0316576_10289948 3300031727 Bacteria 1224
32 Ga0316576_10319548 3300031727 Bacteria 1158
33 Ga0316578_10000273 3300031728 Bacteria 15540
34 Ga0316578_10000396 3300031728 Bacteria 14085
35 Ga0316578_10004436 3300031728 Bacteria 6630
36 Ga0316578_10013967 3300031728 Bacteria 4272
37 Ga0316578_10018657 3300031728 Bacteria 3806
38 Ga0316578_10029891 3300031728 Bacteria 3095
39 Ga0316578_10251361 3300031728 Bacteria 1060
40 Ga0316577_10000808 3300031733 Bacteria 13589
41 Ga0316577_10005734 3300031733 Bacteria 6522
42 Ga0316577_10009073 3300031733 Bacteria 5342
43 Ga0316577_10058177 3300031733 Bacteria 2158
44 Ga0316577_10124345 3300031733 Bacteria 1450
45 Ga0316577_10240980 3300031733 Bacteria 1023
46 Ga0316577_10361669 3300031733 Bacteria 824
47 Ga0316583_10000342 3300032133 Bacteria 13290
48 Ga0316583_10005081 3300032133 Bacteria 4710
49 Ga0316583_10008128 3300032133 Bacteria 3781
50 Ga0316583_10011102 3300032133 Bacteria 3243
51 Ga0316583_10023441 3300032133 Bacteria 2206
52 Ga0316583_10040150 3300032133 Bacteria 1657
53 Ga0316583_10048598 3300032133 Bacteria 1493
54 Ga0316583_10051425 3300032133 Bacteria 1450
55 Ga0316585_10001120 3300032137 Bacteria 6978
56 Ga0316585_10003201 3300032137 Bacteria 4472
57 Ga0316585_10006905 3300032137 Bacteria 3258
58 Ga0316585_10008312 3300032137 Bacteria 3009
59 Ga0316585_10040334 3300032137 Bacteria 1486
60 Ga0316580_10005419 3300032139 Bacteria 3722
61 Ga0316580_10005944 3300032139 Bacteria 3581
62 Ga0316580_10018977 3300032139 Bacteria 2116
63 Ga0316580_10043520 3300032139 Bacteria 1385
64 Ga0316593_10000031 3300032168 Bacteria 14752
65 Ga0316593_10000158 3300032168 Bacteria 9794
66 Ga0316593_10000278 3300032168 Bacteria 8597
67 Ga0316593_10000553 3300032168 Bacteria 7002
68 Ga0316593_10000848 3300032168 Bacteria 6188
69 Ga0316593_10001195 3300032168 Bacteria 5565
70 Ga0316593_10002697 3300032168 Bacteria 4270
71 Ga0316593_10006739 3300032168 Bacteria 3120
72 Ga0316593_10010274 3300032168 Bacteria 2678
73 Ga0316593_10010596 3300032168 Bacteria 2649
74 Ga0316593_10010852 3300032168 Bacteria 2629
75 Ga0316593_10011946 3300032168 Bacteria 2538
76 Ga0316593_10014889 3300032168 Bacteria 2330
77 Ga0316593_10016426 3300032168 Bacteria 2244
78 Ga0316593_10018705 3300032168 Bacteria 2133
79 Ga0316593_10022864 3300032168 Bacteria 1968
80 Ga0316593_10023812 3300032168 Bacteria 1936
81 Ga0316593_10026649 3300032168 Bacteria 1849
82 Ga0316593_10052093 3300032168 Bacteria 1385
83 Ga0316593_10055552 3300032168 Bacteria 1346
84 Ga0316593_10102103 3300032168 Bacteria 1018
85 Ga0316593_10116682 3300032168 Bacteria 956
86 Ga0316593_10121961 3300032168 Bacteria 937
87 Ga0316592_1000462 3300033524 Bacteria 5603
88 Ga0316592_1000536 3300033524 Bacteria 5367
89 Ga0316592_1002993 3300033524 Unclassified 2987
90 Ga0316592_1010913 3300033524 Bacteria 1838
91 Ga0316592_1014427 3300033524 Bacteria 1639
92 Ga0316592_1020716 3300033524 Bacteria 1398
93 Ga0316592_1021045 3300033524 Bacteria 1387
94 Ga0316592_1029659 3300033524 Unclassified 1187
95 Ga0316592_1040699 3300033524 Eukaryota 1028
96 Ga0316588_1002017 3300033528 Bacteria 3471
97 Ga0316588_1005805 3300033528 Bacteria 2431
98 Ga0316588_1009696 3300033528 Bacteria 2013
99 Ga0316588_1017494 3300033528 Bacteria 1598
100 Ga0316588_1026560 3300033528 Bacteria 1341
101 Ga0316588_1027172 3300033528 Bacteria 1328
102 Ga0316588_1082786 3300033528 Bacteria 796
103 Ga0316587_1019830 3300033529 Bacteria 1139
104 Ga0316587_1033633 3300033529 Bacteria 912
105 Ga0316596_1000036 3300033541 Bacteria 13868
106 Ga0316596_1000058 3300033541 Bacteria 12401
107 Ga0316596_1000988 3300033541 Bacteria 5465
108 Ga0316596_1001007 3300033541 Bacteria 5422
109 Ga0316596_1001016 3300033541 Bacteria 5403
110 Ga0316596_1001482 3300033541 Bacteria 4755
111 Ga0316596_1001814 3300033541 Bacteria 4440
112 Ga0316596_1002322 3300033541 Bacteria 4044
113 Ga0316596_1002914 3300033541 Bacteria 3707
114 Ga0316596_1003948 3300033541 Bacteria 3287
115 Ga0316596_1004900 3300033541 Bacteria 3027
116 Ga0316596_1004928 3300033541 Bacteria 3022
117 Ga0316596_1005115 3300033541 Bacteria 2982
118 Ga0316596_1007874 3300033541 Bacteria 2526
119 Ga0316596_1009369 3300033541 Bacteria 2349
120 Ga0316596_1009511 3300033541 Bacteria 2333
121 Ga0316596_1010054 3300033541 Bacteria 2282
122 Ga0316596_1012785 3300033541 Bacteria 2068
123 Ga0316596_1014376 3300033541 Bacteria 1962
124 Ga0316596_1014968 3300033541 Bacteria 1929
125 Ga0316596_1018074 3300033541 Bacteria 1779
126 Ga0316596_1018195 3300033541 Bacteria 1774
127 Ga0316596_1020202 3300033541 Bacteria 1693
128 Ga0316596_1022145 3300033541 Bacteria 1623
129 Ga0316596_1046790 3300033541 Bacteria 1143
130 Ga0316596_1048409 3300033541 Bacteria 1123
131 Ga0316596_1051424 3300033541 Bacteria 1091
132 Ga0316574_0004768 3300035398 Bacteria 7163
133 Ga0316574_0010198 3300035398 Bacteria 5296
134 Ga0316574_0017765 3300035398 Bacteria 4169
135 Ga0316574_0020915 3300035398 Bacteria 3878
136 Ga0316574_0024757 3300035398 Bacteria 3596
137 Ga0316574_0043730 3300035398 Bacteria 2768
138 Ga0316574_0083416 3300035398 Bacteria 2031
139 Ga0316574_0158411 3300035398 Bacteria 1458
140 Ga0316574_0202251 3300035398 Bacteria 1276
141 Ga0316582_0001534 3300036647 Bacteria 10224
142 Ga0316582_0009633 3300036647 Bacteria 5250
143 Ga0316582_0010203 3300036647 Bacteria 5134
144 Ga0316582_0020763 3300036647 Bacteria 3868
145 Ga0316582_0030582 3300036647 Bacteria 3281
146 Ga0316582_0032769 3300036647 Bacteria 3186
147 Ga0316582_0044146 3300036647 Bacteria 2800
148 Ga0316582_0061796 3300036647 Bacteria 2403
149 Ga0316582_0171157 3300036647 Bacteria 1474
150 Ga0316582_0188363 3300036647 Bacteria 1405
151 Ga0316582_0224965 3300036647 Unclassified 1283
152 Ga0316582_0279725 3300036647 Bacteria 1145
153 Ga0316582_0329218 3300036647 Bacteria 1050
154 Ga0316582_0400524 3300036647 Unclassified 945
155 Ga0316584_0007294 3300036712 Bacteria 7548
156 Ga0316584_0009118 3300036712 Bacteria 6870
157 Ga0316584_0017588 3300036712 Bacteria 5145
158 Ga0316584_0023364 3300036712 Bacteria 4517
159 Ga0316584_0025940 3300036712 Bacteria 4302
160 Ga0316584_0035352 3300036712 Bacteria 3706
161 Ga0316584_0041422 3300036712 Bacteria 3432
162 Ga0316584_0044037 3300036712 Bacteria 3328
163 Ga0316584_0051851 3300036712 Bacteria 3068
164 Ga0316584_0114634 3300036712 Bacteria 2016
165 Ga0316584_0168633 3300036712 Bacteria 1625
166 Ga0316584_0189797 3300036712 Bacteria 1519
167 Ga0316584_0278016 3300036712 Bacteria 1217
168 Ga0316584_0369754 3300036712 Unclassified 1026
169 Ga0316581_0011547 3300037588 Bacteria 2472
170 Ga0316581_0042275 3300037588 Bacteria 1391
171 Ga0316581_0128752 3300037588 Bacteria 780
172 Ga0400484_03429 3300038725 Bacteria 9202
173 Ga0400484_18778 3300038725 Bacteria 13718
174 Ga0400490_07105 3300038726 Bacteria 3043
175 Ga0400490_07384 3300038726 Bacteria 1331
176 Ga0400490_18584 3300038726 Bacteria 1761
177 Ga0400490_18978 3300038726 Bacteria 41932
178 Ga0400490_40199 3300038726 Bacteria 2642
179 Ga0400491_02605 3300038727 Bacteria 5144
180 Ga0400491_23551 3300038727 Bacteria 1292
181 Ga0400485_05635 3300038735 Bacteria 4210
182 Ga0400485_10369 3300038735 Bacteria 14578
183 Ga0400485_12186 3300038735 Bacteria 15754
184 Ga0400485_14867 3300038735 Bacteria 7745
185 Ga0400488_07617 3300038741 Bacteria 1900
186 Ga0400488_37057 3300038741 Bacteria 2664
187 Ga0400488_59906 3300038741 Bacteria 7640
188 Ga0400486_07167 3300038742 Bacteria 15754
189 Ga0400486_19544 3300038742 Bacteria 14376
190 Ga0400486_22210 3300038742 Bacteria 14238
191 Ga0400486_30281 3300038742 Bacteria 14022
192 Ga0400483_067094 3300039062 Bacteria 2177
193 Ga0400483_103978 3300039062 Bacteria 1909
194 Ga0400483_120099 3300039062 Bacteria 48943
195 Ga0400483_143180 3300039062 Bacteria 4046
196 Ga0400483_159306 3300039062 Bacteria 1245
197 Ga0400483_182886 3300039062 Bacteria 2186
198 Ga0400483_216594 3300039062 Bacteria 3541
199 Ga0400483_228169 3300039062 Bacteria 2751
200 Ga0400483_257333 3300039062 Bacteria 11342
201 Ga0400489_53490 3300039093 Bacteria 12707
202 Ga0400489_59643 3300039093 Bacteria 25982
203 Ga0400489_74550 3300039093 Bacteria 6193
204 Ga0400489_87136 3300039093 Bacteria 2558
205 Ga0400487_07882 3300039110 Bacteria 2231
206 Ga0400487_22368 3300039110 Bacteria 2295
207 Ga0400487_32098 3300039110 Bacteria 9097
208 Ga0400487_41192 3300039110 Bacteria 13896
209 Ga0451577_0029947 3300042876 Bacteria 4917
210 Ga0451577_0053967 3300042876 Bacteria 3588
211 Ga0451577_0381668 3300042876 Bacteria 1279
212 Ga0453683_0091565 3300044673 Bacteria 1906
213 Ga0453684_0012653 3300044712 Bacteria 13869
214 Ga0453684_0035202 3300044712 Bacteria 6926
215 Ga0453684_0035213 3300044712 Bacteria 6925
216 Ga0453684_0040543 3300044712 Bacteria 6320
217 Ga0453684_0147913 3300044712 Bacteria 2795
218 Ga0453684_0392328 3300044712 Bacteria 1556
219 Ga0453684_0449139 3300044712 Bacteria 1435
220 Ga0451576_0001727 3300045051 Bacteria 35974
221 Ga0451576_0548203 3300045051 Bacteria 1215
222 2524002999 2523533628 Bacteria 4098242
223 2740990523 2740891818 Bacteria 6711283
224 Ga0207684_10137551
225 Ga0070699_100372434
226 Ga0068859_100571783
227 Ga0097620_100571747
228 Ga0207646_10115472
229 Ga0265318_10011693
230 Ga0316575_10000368
231 Ga0316575_10011870
232 Ga0316575_10014299
233 Ga0316575_10020410
234 Ga0316575_10034566
235 Ga0316575_10064218
236 Ga0316575_10092847
237 Ga0316575_10125986
238 Ga0316575_10141869
239 Ga0316579_10002337
240 Ga0316579_10002513
241 Ga0316579_10010160
242 Ga0316579_10018503
243 Ga0316579_10031447
244 Ga0316579_10151585
245 Ga0316576_10003381
246 Ga0316576_10009654
247 Ga0316576_10037223
248 Ga0316576_10048913
249 Ga0316576_10087676
250 Ga0316576_10092733
251 Ga0316576_10099427
252 Ga0316576_10116397
253 Ga0316576_10178242
254 Ga0316576_10289948
255 Ga0316576_10319548
256 Ga0316578_10000273
257 Ga0316578_10000396
258 Ga0316578_10004436
259 Ga0316578_10013967
260 Ga0316578_10018657
261 Ga0316578_10029891
262 Ga0316578_10251361
263 Ga0316577_10000808
264 Ga0316577_10005734
265 Ga0316577_10009073
266 Ga0316577_10058177
267 Ga0316577_10124345
268 Ga0316577_10240980
269 Ga0316577_10361669
270 Ga0316583_10000342
271 Ga0316583_10005081
272 Ga0316583_10008128
273 Ga0316583_10011102
274 Ga0316583_10023441
275 Ga0316583_10040150
276 Ga0316583_10048598
277 Ga0316583_10051425
278 Ga0316585_10001120
279 Ga0316585_10003201
280 Ga0316585_10006905
281 Ga0316585_10008312
282 Ga0316585_10040334
283 Ga0316580_10005419
284 Ga0316580_10005944
285 Ga0316580_10018977
286 Ga0316580_10043520
287 Ga0316593_10000031
288 Ga0316593_10000158
289 Ga0316593_10000278
290 Ga0316593_10000553
291 Ga0316593_10000848
292 Ga0316593_10001195
293 Ga0316593_10002697
294 Ga0316593_10006739
295 Ga0316593_10010274
296 Ga0316593_10010596
297 Ga0316593_10010852
298 Ga0316593_10011946
299 Ga0316593_10014889
300 Ga0316593_10016426
301 Ga0316593_10018705
302 Ga0316593_10022864
303 Ga0316593_10023812
304 Ga0316593_10026649
305 Ga0316593_10052093
306 Ga0316593_10055552
307 Ga0316593_10102103
308 Ga0316593_10116682
309 Ga0316593_10121961
310 Ga0316592_1000462
311 Ga0316592_1000536
312 Ga0316592_1002993
313 Ga0316592_1010913
314 Ga0316592_1014427
315 Ga0316592_1020716
316 Ga0316592_1021045
317 Ga0316592_1029659
318 Ga0316592_1040699
319 Ga0316588_1002017
320 Ga0316588_1005805
321 Ga0316588_1009696
322 Ga0316588_1017494
323 Ga0316588_1026560
324 Ga0316588_1027172
325 Ga0316588_1082786
326 Ga0316587_1019830
327 Ga0316587_1033633
328 Ga0316596_1000036
329 Ga0316596_1000058
330 Ga0316596_1000988
331 Ga0316596_1001007
332 Ga0316596_1001016
333 Ga0316596_1001482
334 Ga0316596_1001814
335 Ga0316596_1002322
336 Ga0316596_1002914
337 Ga0316596_1003948
338 Ga0316596_1004900
339 Ga0316596_1004928
340 Ga0316596_1005115
341 Ga0316596_1007874
342 Ga0316596_1009369
343 Ga0316596_1009511
344 Ga0316596_1010054
345 Ga0316596_1012785
346 Ga0316596_1014376
347 Ga0316596_1014968
348 Ga0316596_1018074
349 Ga0316596_1018195
350 Ga0316596_1020202
351 Ga0316596_1022145
352 Ga0316596_1046790
353 Ga0316596_1048409
354 Ga0316596_1051424
355 Ga0316574_0004768
356 Ga0316574_0010198
357 Ga0316574_0017765
358 Ga0316574_0020915
359 Ga0316574_0024757
360 Ga0316574_0043730
361 Ga0316574_0083416
362 Ga0316574_0158411
363 Ga0316574_0202251
364 Ga0316582_0001534
365 Ga0316582_0009633
366 Ga0316582_0010203
367 Ga0316582_0020763
368 Ga0316582_0030582
369 Ga0316582_0032769
370 Ga0316582_0044146
371 Ga0316582_0061796
372 Ga0316582_0171157
373 Ga0316582_0188363
374 Ga0316582_0224965
375 Ga0316582_0279725
376 Ga0316582_0329218
377 Ga0316582_0400524
378 Ga0316584_0007294
379 Ga0316584_0009118
380 Ga0316584_0017588
381 Ga0316584_0023364
382 Ga0316584_0025940
383 Ga0316584_0035352
384 Ga0316584_0041422
385 Ga0316584_0044037
386 Ga0316584_0051851
387 Ga0316584_0114634
388 Ga0316584_0168633
389 Ga0316584_0189797
390 Ga0316584_0278016
391 Ga0316584_0369754
392 Ga0316581_0011547
393 Ga0316581_0042275
394 Ga0316581_0128752
395 Ga0400484_03429
396 Ga0400484_18778
397 Ga0400490_07105
398 Ga0400490_07384
399 Ga0400490_18584
400 Ga0400490_18978
401 Ga0400490_40199
402 Ga0400491_02605
403 Ga0400491_23551
404 Ga0400485_05635
405 Ga0400485_10369
406 Ga0400485_12186
407 Ga0400485_14867
408 Ga0400488_07617
409 Ga0400488_37057
410 Ga0400488_59906
411 Ga0400486_07167
412 Ga0400486_19544
413 Ga0400486_22210
414 Ga0400486_30281
415 Ga0400483_067094
416 Ga0400483_103978
417 Ga0400483_120099
418 Ga0400483_143180
419 Ga0400483_159306
420 Ga0400483_182886
421 Ga0400483_216594
422 Ga0400483_228169
423 Ga0400483_257333
424 Ga0400489_53490
425 Ga0400489_59643
426 Ga0400489_74550
427 Ga0400489_87136
428 Ga0400487_07882
429 Ga0400487_22368
430 Ga0400487_32098
431 Ga0400487_41192
432 Ga0451577_0029947
433 Ga0451577_0053967
434 Ga0451577_0381668
435 Ga0453683_0091565
436 Ga0453684_0012653
437 Ga0453684_0035202
438 Ga0453684_0035213
439 Ga0453684_0040543
440 Ga0453684_0147913
441 Ga0453684_0392328
442 Ga0453684_0449139
443 Ga0451576_0001727
444 Ga0451576_0548203
445 2524002999
446 2740990523

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00687

Ribosomal_L1

Ribosomal protein L1p/L10e family

30

222

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4v8y-assembly1.cif.gz_CL cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic translation initiation complex 0.9587 4 228
7p7t-assembly1.cif.gz_F poxta-eq2 antibiotic resistance abcf bound to e. faecalis 70s ribosome, state iii 0.958 4 229
2hw8-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.9568 3 229
5npm-assembly1.cif.gz_A crystal structure of mutant ribosomal protein tthl1 lacking 8 n-terminal residues in complex with 80nt 23s rna from thermus thermophilus 0.955 19 229
4v5f-assembly1.cif.gz_BC error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.9542 5 228
ID Description Score Start End Superfamily
af_Q60E59_194_280_3.40.50.790 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Ribosomal protein L1/L10, domain II 0.9876 74 161 3.40.50.790
af_Q60E59_194_280_3.40.50.790 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Ribosomal protein L1/L10, domain II 0.9766 74 161 3.40.50.790
af_P9WHC7_16_229_3.30.190.20 Alpha Beta;2-Layer Sandwich;Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase;Ribosomal protein L1/L10, rRNA-binding domain 0.9667 16 228 3.30.190.20
af_I1L5L1_126_340_3.30.190.20 Alpha Beta;2-Layer Sandwich;Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase;Ribosomal protein L1/L10, rRNA-binding domain 0.9616 18 231 3.30.190.20
1zhoG02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Ribosomal protein L1/L10, domain II 0.9526 69 161 3.40.50.790
ID Description Score Start End GO Terms
AF-A0A3C0R701-F1-model_v4 Ribosomal protein 0.99 60 231 GO:0003735
GO:0006412
GO:0006417
GO:0015934
GO:0019843
AF-A0A099DCT0-F1-model_v4 deleted 0.9869 69 208
AF-A0A4Q6EU90-F1-model_v4 deleted 0.982 70 231
AF-A0A6H9RWV4-F1-model_v4 Ribosomal protein 0.9819 62 212 GO:0003735
GO:0006412
GO:0006417
GO:0019843
GO:0022625
AF-A0A6A5L9E3-F1-model_v4 deleted 0.9775 36 228

Map