F335450

General Info

Members Datasets Scaffolds Average Seq Length
223 156 446 249

Family's Representative Sequence

Representative Sequence 3300006175|Ga0070712_100240463|Ga0070712_1002404632
Length 274
Sequence VTPVNAPSWLVERPIAHRGLHDSAKGVIENTLQAAEAAIAGGFAIECDIQLSADGEAIVFHDDTLDRLTDATGALSARSAAEIARLRINGSGEPPPTFAAFLDAVAGRTTIICELKSTFNGDWRIADRAAALAATYDGALAFKSFDHDLAAYLRLRRPHMRPPRGRCPIGLLAQGSYEGPDWAFLTPEQKRDWTDFDHYDLARPDFLSFNVDDLPHKIPFLVKQLTYAPIMVWTVRTAEQREAAHKWADQIVFDGDPKAHGSWRPFSYLESPTS

Samples

Sample ID Description Type Environment
1 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
7 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
46 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
67 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
68 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
71 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
72 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
73 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
74 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
75 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
76 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
77 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
78 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
79 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
89 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
90 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
91 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
92 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
93 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
94 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
95 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
103 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
117 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
120 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
121 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
122 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
123 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
127 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
128 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
129 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
130 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
131 2643221629 Devosia sp. Root105 Isolate Unclassified
132 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
133 2643221662 Devosia sp. Root413D1 Isolate Unclassified
134 2643221719 Rhizobium sp. Root274 Isolate Unclassified
135 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
136 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
137 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
138 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
139 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
140 2841734538 Mesorhizobium sp. M6A.T.Cr.TU.016.01.1.1 Isolate Nodule
141 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
142 2849560528 Caulobacter zeae 410 Isolate Unclassified
143 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
144 2851153111 Caulobacter radicis 736 Isolate Unclassified
145 2871474448 Mesorhizobium sp. M6A.T.Cr.TU.017.01.1.1 Isolate Nodule
146 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
147 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
148 2902330777 Methylobacterium sp. 2A Isolate Unclassified
149 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
150 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
151 2937836603 Mesorhizobium sp. M6A.T.Cr.TU.014.01.1.1 Isolate Nodule
152 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
153 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
154 8004633249 Mesorhizobium sp. M6A.T.Ce.TU.002.03.1.1 Isolate Nodule
155 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
156 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.1
Metatranscriptomes 0
Isolates 13.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.28
Nodule 3.14
Rhizoplane 4.48
Rhizosphere 72.2
Stem 0
Stem Tuber 0
Unclassified 3.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070712_100240463 3300006175 Bacteria 1442
2 JGI25153J46596_10019910 3300003215 Bacteria 2553
3 JGI25153J46596_10049614 3300003215 Bacteria 1216
4 rootH1_10020065 3300003316 Bacteria 1868
5 rootH2_10243166 3300003320 Bacteria 1173
6 rootH1_10030889 3300003323 Bacteria 3946
7 rootH1_10127029 3300003323 Bacteria 2893
8 rootH1_10216037 3300003323 Bacteria 1707
9 Ga0055536_1005634 3300003781 Bacteria 6063
10 Ga0055530_10001473 3300003791 Bacteria 17104
11 Ga0065165_1052980 3300005262 Bacteria 1143
12 Ga0070658_10004392 3300005327 Bacteria 11497
13 Ga0070658_10024993 3300005327 Bacteria 4790
14 Ga0070658_10382175 3300005327 Bacteria 1208
15 Ga0070676_10015285 3300005328 Bacteria 4234
16 Ga0070676_10042524 3300005328 Bacteria 2639
17 Ga0070660_100065632 3300005339 Bacteria 2825
18 Ga0070660_100117823 3300005339 Bacteria 2118
19 Ga0070661_100003398 3300005344 Bacteria 10986
20 Ga0070661_100032479 3300005344 Bacteria 3779
21 Ga0070675_100273604 3300005354 Bacteria 1482
22 Ga0070671_100528027 3300005355 Bacteria 1017
23 Ga0070673_100006273 3300005364 Bacteria 7712
24 Ga0070659_100006461 3300005366 Bacteria 8465
25 Ga0070659_100010045 3300005366 Bacteria 6967
26 Ga0070659_100199209 3300005366 Bacteria 1648
27 Ga0070663_100033298 3300005455 Bacteria 3559
28 Ga0070678_100074325 3300005456 Bacteria 2554
29 Ga0068867_100502789 3300005459 Bacteria 1042
30 Ga0070679_100278130 3300005530 Bacteria 1627
31 Ga0068853_100032502 3300005539 Bacteria 4420
32 Ga0068853_100131266 3300005539 Bacteria 2242
33 Ga0068853_100350128 3300005539 Unclassified 1374
34 Ga0070693_100063241 3300005547 Bacteria 2156
35 Ga0070693_100071698 3300005547 Bacteria 2042
36 Ga0070665_100058619 3300005548 Bacteria 3860
37 Ga0070665_100066147 3300005548 Bacteria 3626
38 Ga0068855_100007483 3300005563 Bacteria 13223
39 Ga0068855_100035789 3300005563 Bacteria 5913
40 Ga0070664_100551100 3300005564 Unclassified 1066
41 Ga0068857_100028548 3300005577 Bacteria 4923
42 Ga0068854_100012164 3300005578 Bacteria 5631
43 Ga0068854_100030492 3300005578 Bacteria 3741
44 Ga0068856_100036258 3300005614 Bacteria 4835
45 Ga0068856_100076769 3300005614 Bacteria 3310
46 Ga0068852_100008419 3300005616 Bacteria 7603
47 Ga0068852_100051677 3300005616 Bacteria 3528
48 Ga0068852_100074953 3300005616 Bacteria 2982
49 Ga0068851_10035034 3300005834 Bacteria 2508
50 Ga0075362_10001437 3300006177 Bacteria 7609
51 Ga0075369_10001559 3300006186 Bacteria 7854
52 Ga0105240_10026992 3300009093 Bacteria 7527
53 Ga0105240_10109314 3300009093 Bacteria 3348
54 Ga0105240_10272696 3300009093 Bacteria 1947
55 Ga0105241_10045303 3300009174 Bacteria 3337
56 Ga0105237_10042333 3300009545 Bacteria 4593
57 Ga0105237_10071513 3300009545 Bacteria 3464
58 Ga0105238_10011020 3300009551 Bacteria 9089
59 Ga0105238_10026867 3300009551 Bacteria 5867
60 Ga0105238_10041141 3300009551 Bacteria 4681
61 Ga0105239_10033483 3300010375 Bacteria 5643
62 Ga0105239_10137525 3300010375 Bacteria 2720
63 Ga0105239_10163734 3300010375 Bacteria 2486
64 Ga0105239_10345262 3300010375 Bacteria 1680
65 Ga0105239_10594966 3300010375 Bacteria 1261
66 Ga0105246_10144783 3300011119 Bacteria 1792
67 Ga0157371_10006256 3300013102 Bacteria 9862
68 Ga0157370_10014209 3300013104 Bacteria 8159
69 Ga0157369_10022487 3300013105 Bacteria 7034
70 Ga0157374_10160560 3300013296 Bacteria 2189
71 Ga0157372_10065679 3300013307 Bacteria 4075
72 Ga0163163_10028776 3300014325 Bacteria 5340
73 Ga0213876_10083078 3300021384 Unclassified 1694
74 Ga0209026_1000665 3300025250 Bacteria 20993
75 Ga0209758_1037472 3300025297 Bacteria 1874
76 Ga0207647_10124282 3300025904 Bacteria 1519
77 Ga0207645_10107601 3300025907 Bacteria 1803
78 Ga0207705_10022045 3300025909 Bacteria 4545
79 Ga0207705_10398158 3300025909 Bacteria 1065
80 Ga0207654_10006713 3300025911 Bacteria 5785
81 Ga0207695_10167746 3300025913 Bacteria 2123
82 Ga0207695_10176751 3300025913 Bacteria 2057
83 Ga0207695_10227585 3300025913 Bacteria 1770
84 Ga0207657_10005963 3300025919 Bacteria 12678
85 Ga0207657_10019824 3300025919 Bacteria 6375
86 Ga0207657_10211804 3300025919 Bacteria 1555
87 Ga0207649_10000849 3300025920 Bacteria 19640
88 Ga0207694_10075014 3300025924 Bacteria 2647
89 Ga0207694_10081694 3300025924 Bacteria 2539
90 Ga0207667_10019884 3300025949 Bacteria 7481
91 Ga0207667_10039855 3300025949 Bacteria 5003
92 Ga0207667_10092507 3300025949 Bacteria 3123
93 Ga0207667_10194267 3300025949 Bacteria 2082
94 Ga0207640_10021944 3300025981 Bacteria 3814
95 Ga0207640_10556209 3300025981 Bacteria 965
96 Ga0207677_10066122 3300026023 Bacteria 2526
97 Ga0207639_10019807 3300026041 Bacteria 4805
98 Ga0207639_10197660 3300026041 Bacteria 1722
99 Ga0207639_10312401 3300026041 Unclassified 1393
100 Ga0207702_10184466 3300026078 Bacteria 1923
101 Ga0207702_10290550 3300026078 Bacteria 1549
102 Ga0207702_10362864 3300026078 Bacteria 1389
103 Ga0207648_10059856 3300026089 Bacteria 3322
104 Ga0207648_10300437 3300026089 Bacteria 1439
105 Ga0207648_10457158 3300026089 Bacteria 1163
106 Ga0207674_10020616 3300026116 Bacteria 7117
107 Ga0207674_10028085 3300026116 Bacteria 5943
108 Ga0207683_10091933 3300026121 Bacteria 2703
109 Ga0207698_10004095 3300026142 Bacteria 8852
110 Ga0207698_10042238 3300026142 Bacteria 3404
111 Ga0207698_10394894 3300026142 Bacteria 1320
112 Ga0268266_10064191 3300028379 Bacteria 3172
113 Ga0268266_10071606 3300028379 Bacteria 3005
114 Ga0268266_10503833 3300028379 Bacteria 1156
115 Ga0265318_10036475 3300028577 Bacteria 1886
116 Ga0307515_10050498 3300028794 Bacteria 6226
117 Ga0265328_10000066 3300031239 Bacteria 58346
118 Ga0265328_10008172 3300031239 Bacteria 4329
119 Ga0265328_10057124 3300031239 Bacteria 1433
120 Ga0265320_10042958 3300031240 Bacteria 2238
121 Ga0265320_10124983 3300031240 Bacteria 1171
122 Ga0265329_10011310 3300031242 Bacteria 3246
123 Ga0265331_10002028 3300031250 Bacteria 14040
124 Ga0265327_10039045 3300031251 Bacteria 2582
125 Ga0265316_10000575 3300031344 Bacteria 41059
126 Ga0265314_10026392 3300031711 Bacteria 4365
127 Ga0265314_10147984 3300031711 Bacteria 1444
128 Ga0265342_10139834 3300031712 Bacteria 1351
129 Ga0316576_10214903 3300031727 Bacteria 1447
130 Ga0316582_0201824 3300036647 Bacteria 1357
131 Ga0316584_0210051 3300036712 Bacteria 1433
132 Ga0373925_0352482 3300037068 Bacteria 1195
133 Ga0395900_0000121 3300037418 Bacteria 135026
134 Ga0395898_0000247 3300037466 Bacteria 135026
135 Ga0395905_0000112 3300037471 Bacteria 135010
136 Ga0436364_0138050 3300037853 Bacteria 1943
137 Ga0395901_0000078 3300038443 Bacteria 135026
138 Ga0395901_0010740 3300038443 Bacteria 9284
139 Ga0436365_1495186 3300039437 Bacteria 913
140 Ga0436360_0463642 3300039438 Bacteria 7511
141 Ga0436361_0507929 3300039447 Bacteria 1443
142 Ga0436361_0533774 3300039447 Unclassified 1638
143 Ga0436362_0795176 3300039453 Bacteria 829
144 Ga0439465_0020126 3300041413 Bacteria 2088
145 Ga0466968_0058353 3300044735 Bacteria 1660
146 Ga0466970_0038046 3300044765 Bacteria 2552
147 Ga0495603_0130878 3300046455 Bacteria 1461
148 Ga0495638_0007400 3300046460 Bacteria 7878
149 Ga0495630_0477291 3300046517 Bacteria 956
150 Ga0496101_0219858 3300048904 Bacteria 1474
151 Ga0496102_0682371 3300048905 Bacteria 950
152 Ga0496104_0026767 3300048907 Bacteria 5329
153 Ga0496105_0008362 3300048908 Bacteria 8041
154 Ga0496107_0060136 3300048910 Bacteria 2750
155 Ga0496109_0070270 3300048912 Bacteria 3212
156 Ga0496110_0059582 3300048913 Bacteria 3366
157 Ga0496110_0155929 3300048913 Bacteria 2068
158 Ga0496111_0004609 3300048914 Bacteria 8724
159 Ga0496115_0023861 3300048918 Bacteria 4750
160 Ga0496121_0076756 3300048924 Bacteria 2663
161 Ga0496124_0079891 3300048927 Bacteria 2693
162 Ga0496126_0449749 3300048929 Bacteria 1037
163 Ga0501032_0020728 3300049569 Bacteria 4576
164 Ga0501033_0048931 3300049570 Bacteria 3139
165 Ga0501033_0071124 3300049570 Bacteria 2556
166 Ga0501034_0000211 3300049571 Bacteria 110858
167 Ga0501034_0052206 3300049571 Bacteria 4120
168 Ga0501034_0129713 3300049571 Bacteria 2505
169 Ga0501034_0132318 3300049571 Bacteria 2477
170 Ga0501034_0159649 3300049571 Bacteria 2226
171 Ga0501047_0087645 3300049581 Bacteria 2990
172 Ga0501069_0257367 3300049585 Bacteria 1019
173 Ga0501070_0408576 3300049586 Bacteria 1097
174 Ga0501072_0084650 3300049588 Bacteria 2514
175 Ga0501072_0159569 3300049588 Bacteria 1799
176 Ga0501073_0027775 3300049589 Bacteria 4044
177 Ga0501073_0727786 3300049589 Bacteria 684
178 Ga0501080_0388390 3300049742 Bacteria 1257
179 Ga0501081_0161869 3300049743 Unclassified 1613
180 Ga0501083_0270484 3300049744 Bacteria 1105
181 Ga0501083_0303980 3300049744 Bacteria 1037
182 Ga0501083_0356022 3300049744 Unclassified 952
183 Ga0501044_0006012 3300049823 Bacteria 13408
184 nmdc:mga03683_552_c1 3300050489 Bacteria 10753
185 nmdc:mga03n38_174689_c1 3300050490 Unclassified 1097
186 Ga0500593_000481 3300053117 Bacteria 15725
187 Ga0500593_159992 3300053117 Bacteria 862
188 Ga0500568_0000001 3300053139 Bacteria 988705
189 Ga0500616_0159316 3300053153 Bacteria 1036
190 Ga0501084_0060137 3300054114 Bacteria 3181
191 Ga0501084_0361987 3300054114 Bacteria 1226
192 Ga0501082_0388120 3300060353 Bacteria 1218
193 2509149250 2508501128 Bacteria 8613869
194 2510841058 2510461069 Bacteria 5505000
195 2514590088 2513237351 Bacteria 6968952
196 2596374158 2595698237 Bacteria 6712432
197 2643755928 2643221547 Bacteria 4740017
198 2644166081 2643221629 Bacteria 5850260
199 2644300336 2643221653 Bacteria 4569637
200 2644346913 2643221662 Bacteria 5851492
201 2644658560 2643221719 Bacteria 4568197
202 2776913258 2775507049 Bacteria 6284736
203 2792463423 2791355048 Bacteria 5832535
204 2819242046 2818991272 Bacteria 4622173
205 2829750087 2829745981 Bacteria 5406054
206 2837680894 2837678835 Bacteria 5252418
207 2841740084 2841734538 Bacteria 6784580
208 2843748978 2843744320 Bacteria 5659202
209 2849562973 2849560528 Bacteria 5393480
210 2849573914 2849573788 Bacteria 5421256
211 2851155589 2851153111 Bacteria 5542585
212 2871480245 2871474448 Bacteria 6806570
213 2889307113 2889306138 Bacteria 6358934
214 2898333690 2898329390 Bacteria 5168154
215 2902333054 2902330777 Bacteria 6395352
216 2902411908 2902405164 Bacteria 6784948
217 2928129742 2928125067 Bacteria 5937560
218 2937837840 2937836603 Bacteria 6811263
219 2989778678 2989776772 Bacteria 4843317
220 8002286196 8002285264 Bacteria 6717907
221 8004638970 8004633249 Bacteria 6723080
222 8005250749 8005246636 Bacteria 4933972
223 8045865441 8045864390 Bacteria 5043873
224 Ga0070712_100240463
225 JGI25153J46596_10019910
226 JGI25153J46596_10049614
227 rootH1_10020065
228 rootH2_10243166
229 rootH1_10030889
230 rootH1_10127029
231 rootH1_10216037
232 Ga0055536_1005634
233 Ga0055530_10001473
234 Ga0065165_1052980
235 Ga0070658_10004392
236 Ga0070658_10024993
237 Ga0070658_10382175
238 Ga0070676_10015285
239 Ga0070676_10042524
240 Ga0070660_100065632
241 Ga0070660_100117823
242 Ga0070661_100003398
243 Ga0070661_100032479
244 Ga0070675_100273604
245 Ga0070671_100528027
246 Ga0070673_100006273
247 Ga0070659_100006461
248 Ga0070659_100010045
249 Ga0070659_100199209
250 Ga0070663_100033298
251 Ga0070678_100074325
252 Ga0068867_100502789
253 Ga0070679_100278130
254 Ga0068853_100032502
255 Ga0068853_100131266
256 Ga0068853_100350128
257 Ga0070693_100063241
258 Ga0070693_100071698
259 Ga0070665_100058619
260 Ga0070665_100066147
261 Ga0068855_100007483
262 Ga0068855_100035789
263 Ga0070664_100551100
264 Ga0068857_100028548
265 Ga0068854_100012164
266 Ga0068854_100030492
267 Ga0068856_100036258
268 Ga0068856_100076769
269 Ga0068852_100008419
270 Ga0068852_100051677
271 Ga0068852_100074953
272 Ga0068851_10035034
273 Ga0075362_10001437
274 Ga0075369_10001559
275 Ga0105240_10026992
276 Ga0105240_10109314
277 Ga0105240_10272696
278 Ga0105241_10045303
279 Ga0105237_10042333
280 Ga0105237_10071513
281 Ga0105238_10011020
282 Ga0105238_10026867
283 Ga0105238_10041141
284 Ga0105239_10033483
285 Ga0105239_10137525
286 Ga0105239_10163734
287 Ga0105239_10345262
288 Ga0105239_10594966
289 Ga0105246_10144783
290 Ga0157371_10006256
291 Ga0157370_10014209
292 Ga0157369_10022487
293 Ga0157374_10160560
294 Ga0157372_10065679
295 Ga0163163_10028776
296 Ga0213876_10083078
297 Ga0209026_1000665
298 Ga0209758_1037472
299 Ga0207647_10124282
300 Ga0207645_10107601
301 Ga0207705_10022045
302 Ga0207705_10398158
303 Ga0207654_10006713
304 Ga0207695_10167746
305 Ga0207695_10176751
306 Ga0207695_10227585
307 Ga0207657_10005963
308 Ga0207657_10019824
309 Ga0207657_10211804
310 Ga0207649_10000849
311 Ga0207694_10075014
312 Ga0207694_10081694
313 Ga0207667_10019884
314 Ga0207667_10039855
315 Ga0207667_10092507
316 Ga0207667_10194267
317 Ga0207640_10021944
318 Ga0207640_10556209
319 Ga0207677_10066122
320 Ga0207639_10019807
321 Ga0207639_10197660
322 Ga0207639_10312401
323 Ga0207702_10184466
324 Ga0207702_10290550
325 Ga0207702_10362864
326 Ga0207648_10059856
327 Ga0207648_10300437
328 Ga0207648_10457158
329 Ga0207674_10020616
330 Ga0207674_10028085
331 Ga0207683_10091933
332 Ga0207698_10004095
333 Ga0207698_10042238
334 Ga0207698_10394894
335 Ga0268266_10064191
336 Ga0268266_10071606
337 Ga0268266_10503833
338 Ga0265318_10036475
339 Ga0307515_10050498
340 Ga0265328_10000066
341 Ga0265328_10008172
342 Ga0265328_10057124
343 Ga0265320_10042958
344 Ga0265320_10124983
345 Ga0265329_10011310
346 Ga0265331_10002028
347 Ga0265327_10039045
348 Ga0265316_10000575
349 Ga0265314_10026392
350 Ga0265314_10147984
351 Ga0265342_10139834
352 Ga0316576_10214903
353 Ga0316582_0201824
354 Ga0316584_0210051
355 Ga0373925_0352482
356 Ga0395900_0000121
357 Ga0395898_0000247
358 Ga0395905_0000112
359 Ga0436364_0138050
360 Ga0395901_0000078
361 Ga0395901_0010740
362 Ga0436365_1495186
363 Ga0436360_0463642
364 Ga0436361_0507929
365 Ga0436361_0533774
366 Ga0436362_0795176
367 Ga0439465_0020126
368 Ga0466968_0058353
369 Ga0466970_0038046
370 Ga0495603_0130878
371 Ga0495638_0007400
372 Ga0495630_0477291
373 Ga0496101_0219858
374 Ga0496102_0682371
375 Ga0496104_0026767
376 Ga0496105_0008362
377 Ga0496107_0060136
378 Ga0496109_0070270
379 Ga0496110_0059582
380 Ga0496110_0155929
381 Ga0496111_0004609
382 Ga0496115_0023861
383 Ga0496121_0076756
384 Ga0496124_0079891
385 Ga0496126_0449749
386 Ga0501032_0020728
387 Ga0501033_0048931
388 Ga0501033_0071124
389 Ga0501034_0000211
390 Ga0501034_0052206
391 Ga0501034_0129713
392 Ga0501034_0132318
393 Ga0501034_0159649
394 Ga0501047_0087645
395 Ga0501069_0257367
396 Ga0501070_0408576
397 Ga0501072_0084650
398 Ga0501072_0159569
399 Ga0501073_0027775
400 Ga0501073_0727786
401 Ga0501080_0388390
402 Ga0501081_0161869
403 Ga0501083_0270484
404 Ga0501083_0303980
405 Ga0501083_0356022
406 Ga0501044_0006012
407 nmdc:mga03683_552_c1
408 nmdc:mga03n38_174689_c1
409 Ga0500593_000481
410 Ga0500593_159992
411 Ga0500568_0000001
412 Ga0500616_0159316
413 Ga0501084_0060137
414 Ga0501084_0361987
415 Ga0501082_0388120
416 2509149250
417 2510841058
418 2514590088
419 2596374158
420 2643755928
421 2644166081
422 2644300336
423 2644346913
424 2644658560
425 2776913258
426 2792463423
427 2819242046
428 2829750087
429 2837680894
430 2841740084
431 2843748978
432 2849562973
433 2849573914
434 2851155589
435 2871480245
436 2889307113
437 2898333690
438 2902333054
439 2902411908
440 2928129742
441 2937837840
442 2989778678
443 8002286196
444 8004638970
445 8005250749
446 8045865441

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03009

GDPD

Glycerophosphoryl diester phosphodiesterase family

17

255

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qvq-assembly1.cif.gz_D the structure of an oleispira antarctica phosphodiesterase olei02445 in complex with the product sn-glycerol-3-phosphate 0.8497 13 248
1o1z-assembly1.cif.gz_A crystal structure of glycerophosphodiester phosphodiesterase (gdpd) (tm1621) from thermotoga maritima at 1.60 a resolution 0.8377 19 248
5t9c-assembly1.cif.gz_E crystal structure of b. subtilis 168 glpq in complex with glycerol-3-phosphate (1 hour soak) 0.8336 19 248
1vd6-assembly1.cif.gz_A crystal structure of glycerophosphoryl diester phosphodiesterase complexed with glycerol 0.8311 20 258
3no3-assembly1.cif.gz_A crystal structure of a glycerophosphodiester phosphodiesterase (bdi_0402) from parabacteroides distasonis atcc 8503 at 1.89 a resolution 0.8305 20 248
ID Description Score Start End Superfamily
3qvqC00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphatidylinositol (PI) phosphodiesterase 0.8569 13 248 3.20.20.190
af_Q23244_121_373_3.20.20.190 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphatidylinositol (PI) phosphodiesterase 0.8446 23 247 3.20.20.190
1o1zA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphatidylinositol (PI) phosphodiesterase 0.8377 19 248 3.20.20.190
3no3A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphatidylinositol (PI) phosphodiesterase 0.8321 20 248 3.20.20.190
af_Q9SD81_43_361_3.20.20.190 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphatidylinositol (PI) phosphodiesterase 0.8318 20 248 3.20.20.190
ID Description Score Start End GO Terms
AF-A0A839LWP6-F1-model_v4 deleted 0.998 7 253
AF-A0A839LWP6-F1-model_v4 deleted 0.99 7 253
AF-A0A6L7KP21-F1-model_v4 Phosphodiesterase 0.9776 20 155 GO:0006629
GO:0008081
AF-A0A317E9L4-F1-model_v4 Glycerophosphodiester phosphodiesterase 0.9769 15 253 GO:0006629
GO:0008081
AF-X5MF95-F1-model_v4 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.9749 15 253 GO:0006629
GO:0008889

Map