F335424

General Info

Members Datasets Scaffolds Average Seq Length
223 157 446 560

Family's Representative Sequence

Representative Sequence 3300005981|Ga0081538_10040234|Ga0081538_100402343
Length 623
Sequence MYPAPPVAPSHYRATAERAAGSFRADGTVPPIGSAALGSFAQITISGRQGRRHRGARAACKEVRSTGSMGAAEIAAEETQRDFIRDLVRADLEAGRHDTVVTRFPPEPNGYLHIGHAKSICLNFGVAQAFGGHCNLRFDDTNPLKEELRYIESIKEDVRWLGFDWGEHLYFASDYFEQLVRHGDAYVDDLSPEEIRTYRGTLTEPGRDSPYRERGPEENLDLLRRMRAGEFPDGARVLRAKIDMASGNINLRDPVLYRILHAAHPRTGDAWCIYPTYDFAHGQSDAIEGVTHSLCTLEFEDHRPLYDWLIEHLPVPSRPRQYEFARLNLSHTILSKRRLIQLVEEGYVRAWDDPRMPTLAGLRRRGVPAAAIREFARRIGVAKADNLVDVALLEHCVRELLNRTAERRMAVLRPLKVVLENYPEGQIEQFEAVNNPEDPAAGTRLVPFSRELYIERDDFMEEPAAKFFRLAPGREVRLRYAYLITCREVVKDVAGEVVVLRCTYDPATRGGDAPDGRKVRGTLHWVSAAHALPAEARLYDHLFTRSEPGRDGDFLADLNPRSLEMLTDAWVEPSLAAAVTGEAVQFERQGYFCRDPDSTPERPVFNRTVALRDTWARIQTKQP

Samples

Sample ID Description Type Environment
1 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
62 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
65 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
66 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
67 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
68 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
73 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
74 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
75 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
76 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
77 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
78 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
79 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
80 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
83 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
84 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
85 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
86 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
87 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
88 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
89 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
90 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
95 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
96 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
97 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
98 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
99 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
100 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
103 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
107 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
122 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
123 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
124 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
125 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
126 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
127 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
133 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
134 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
135 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
136 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
137 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
138 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
139 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
140 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
141 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
142 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
143 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
144 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
145 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
146 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
147 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
148 2738541295 Bacillus sp. OK085 Isolate Unclassified
149 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
150 2842682962 Bacillus sp. R-72492 Isolate Unclassified
151 2849139964 Bacillus sp. R-71875 Isolate Unclassified
152 2857581216 Bacillus sp. R-71922 Isolate Unclassified
153 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
154 2887630918 Psychrosphaera haliotis UCD-MCMsp1aY Isolate Unclassified
155 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
156 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere
157 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.72
Metatranscriptomes 0.9
Isolates 5.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.48
Nodule 0
Rhizoplane 6.73
Rhizosphere 81.17
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081538_10040234 3300005981 Bacteria 2985
2 Ga0065712_10076896 3300005290 Bacteria 3583
3 Ga0065715_10109785 3300005293 Bacteria 2652
4 Ga0070670_100005816 3300005331 Bacteria 10427
5 Ga0068869_100021683 3300005334 Bacteria 4421
6 Ga0070680_100046097 3300005336 Bacteria 3545
7 Ga0070660_100009274 3300005339 Bacteria 6917
8 Ga0070689_100001306 3300005340 Bacteria 15857
9 Ga0070691_10024370 3300005341 Bacteria 2812
10 Ga0070692_10036851 3300005345 Bacteria 2484
11 Ga0070705_100031266 3300005440 Bacteria 2946
12 Ga0070685_10021087 3300005466 Bacteria 3538
13 Ga0070706_100006918 3300005467 Bacteria 10705
14 Ga0070707_100011526 3300005468 Bacteria 8244
15 Ga0070707_100096112 3300005468 Bacteria 2869
16 Ga0070698_100033236 3300005471 Bacteria 5343
17 Ga0070699_100003713 3300005518 Bacteria 13492
18 Ga0070697_100001509 3300005536 Bacteria 17689
19 Ga0070696_100058850 3300005546 Bacteria 2684
20 Ga0070665_100035109 3300005548 Bacteria 5041
21 Ga0070704_100005146 3300005549 Bacteria 7602
22 Ga0068856_100166483 3300005614 Bacteria 2215
23 Ga0068859_100000010 3300005617 Bacteria 311529
24 Ga0068864_100065262 3300005618 Bacteria 3158
25 Ga0068858_100049392 3300005842 Bacteria 3896
26 Ga0068860_100016890 3300005843 Bacteria 7114
27 Ga0068862_100033405 3300005844 Bacteria 4349
28 Ga0081455_10002534 3300005937 Bacteria 21714
29 Ga0081538_10019688 3300005981 Bacteria 4999
30 Ga0081539_10002954 3300005985 Bacteria 22356
31 Ga0081539_10021470 3300005985 Bacteria 4312
32 Ga0075363_100031395 3300006048 Bacteria 2754
33 Ga0070712_100022529 3300006175 Bacteria 4152
34 Ga0075367_10030473 3300006178 Bacteria 3094
35 Ga0075369_10000205 3300006186 Bacteria 17311
36 Ga0075370_10063632 3300006353 Bacteria 2103
37 Ga0075428_100010709 3300006844 Bacteria 10192
38 Ga0075428_100033648 3300006844 Bacteria 5658
39 Ga0075428_100109494 3300006844 Bacteria 3009
40 Ga0075431_100012222 3300006847 Bacteria 8666
41 Ga0075431_100030863 3300006847 Bacteria 5521
42 Ga0075433_10002867 3300006852 Bacteria 13211
43 Ga0075433_10011130 3300006852 Bacteria 7235
44 Ga0075433_10046170 3300006852 Bacteria 3787
45 Ga0075433_10068115 3300006852 Bacteria 3124
46 Ga0075433_10175134 3300006852 Bacteria 1909
47 Ga0075434_100013066 3300006871 Bacteria 7884
48 Ga0075434_100015150 3300006871 Bacteria 7386
49 Ga0075434_100056829 3300006871 Bacteria 3889
50 Ga0097620_100000010 3300006931 Bacteria 311529
51 Ga0075435_100024746 3300007076 Bacteria 4664
52 Ga0111539_10007357 3300009094 Bacteria 14102
53 Ga0114129_10002642 3300009147 Bacteria 24941
54 Ga0114129_10122120 3300009147 Bacteria 3584
55 Ga0105243_10023937 3300009148 Bacteria 4653
56 Ga0105238_10052498 3300009551 Bacteria 4098
57 Ga0105249_10032650 3300009553 Bacteria 4710
58 Ga0105249_10102275 3300009553 Bacteria 2696
59 Ga0157370_10001951 3300013104 Bacteria 25406
60 Ga0157374_10006194 3300013296 Bacteria 10138
61 Ga0163163_10063221 3300014325 Bacteria 3669
62 Ga0157380_10076508 3300014326 Bacteria 2724
63 Ga0207684_10002407 3300025910 Bacteria 18913
64 Ga0207693_10001524 3300025915 Bacteria 20450
65 Ga0207657_10016826 3300025919 Bacteria 7039
66 Ga0207694_10014002 3300025924 Bacteria 6048
67 Ga0207689_10100882 3300025942 Bacteria 2371
68 Ga0207661_10042446 3300025944 Bacteria 3585
69 Ga0207708_10063198 3300026075 Bacteria 2828
70 Ga0207702_10142439 3300026078 Bacteria 2171
71 Ga0207676_10018353 3300026095 Bacteria 5084
72 Ga0207676_10154008 3300026095 Bacteria 1983
73 Ga0207674_10026071 3300026116 Bacteria 6219
74 Ga0268266_10006238 3300028379 Bacteria 10947
75 Ga0268264_10006791 3300028381 Bacteria 9615
76 Ga0265319_1000692 3300028563 Bacteria 21966
77 Ga0265334_10005620 3300028573 Bacteria 5479
78 Ga0265338_10043040 3300028800 Bacteria 4195
79 Ga0265320_10003885 3300031240 Bacteria 9884
80 Ga0265325_10043086 3300031241 Bacteria 2357
81 Ga0265329_10009014 3300031242 Bacteria 3748
82 Ga0265331_10029355 3300031250 Bacteria 2745
83 Ga0265316_10083062 3300031344 Bacteria 2454
84 Ga0265313_10018990 3300031595 Bacteria 3842
85 Ga0316575_10019601 3300031665 Bacteria 2589
86 Ga0265314_10058694 3300031711 Bacteria 2636
87 Ga0316576_10000056 3300031727 Bacteria 36239
88 Ga0316576_10007768 3300031727 Bacteria 6775
89 Ga0316576_10015711 3300031727 Bacteria 5089
90 Ga0316576_10021136 3300031727 Bacteria 4495
91 Ga0316576_10023927 3300031727 Bacteria 4261
92 Ga0316578_10055335 3300031728 Bacteria 2328
93 Ga0316577_10022773 3300031733 Bacteria 3479
94 Ga0316577_10023960 3300031733 Bacteria 3390
95 Ga0373939_0004774 3300035114 Bacteria 3214
96 Ga0373954_0005766 3300035118 Bacteria 5376
97 Ga0316574_0004684 3300035398 Bacteria 7205
98 Ga0316574_0005275 3300035398 Bacteria 6882
99 Ga0316574_0005979 3300035398 Bacteria 6531
100 Ga0316574_0023855 3300035398 Bacteria 3656
101 Ga0316574_0026542 3300035398 Bacteria 3484
102 Ga0316574_0079773 3300035398 Bacteria 2076
103 Ga0373931_0002031 3300035691 Bacteria 8905
104 Ga0316582_0002243 3300036647 Bacteria 8994
105 Ga0316582_0031705 3300036647 Bacteria 3233
106 Ga0316584_0131893 3300036712 Bacteria 1866
107 Ga0395900_0059971 3300037418 Bacteria 3916
108 Ga0395900_0098721 3300037418 Bacteria 3000
109 Ga0395901_0228027 3300038443 Bacteria 1945
110 Ga0400484_36421 3300038725 Bacteria 5574
111 Ga0400490_42392 3300038726 Bacteria 46670
112 Ga0400490_60236 3300038726 Bacteria 53180
113 Ga0242420_002099 3300038996 Bacteria 2800
114 Ga0400483_026829 3300039062 Bacteria 15363
115 Ga0400483_027279 3300039062 Bacteria 9484
116 Ga0400483_035407 3300039062 Bacteria 9396
117 Ga0400483_076055 3300039062 Bacteria 4572
118 Ga0400483_153267 3300039062 Bacteria 9403
119 Ga0400483_246070 3300039062 Bacteria 17268
120 Ga0436360_0733782 3300039438 Bacteria 2130
121 Ga0451577_0000151 3300042876 Bacteria 153747
122 Ga0451577_0040778 3300042876 Bacteria 4167
123 Ga0453683_0000007 3300044673 Bacteria 581341
124 Ga0453683_0000145 3300044673 Bacteria 104430
125 Ga0466963_0042679 3300044694 Bacteria 2979
126 Ga0453684_0000424 3300044712 Bacteria 172336
127 Ga0453684_0003180 3300044712 Bacteria 37671
128 Ga0453684_0126649 3300044712 Bacteria 3072
129 Ga0451576_0000653 3300045051 Bacteria 71614
130 Ga0451576_0124815 3300045051 Bacteria 2682
131 Ga0466967_0006939 3300045976 Bacteria 8099
132 Ga0495638_0012500 3300046460 Bacteria 5815
133 Ga0495580_0010419 3300046472 Bacteria 7245
134 Ga0495664_0102529 3300046477 Bacteria 1725
135 Ga0495628_0031198 3300046516 Bacteria 4311
136 Ga0495628_0087325 3300046516 Bacteria 2418
137 Ga0495672_0001971 3300047320 Bacteria 19411
138 Ga0496100_0004395 3300048903 Bacteria 7466
139 Ga0496101_0006203 3300048904 Bacteria 7687
140 Ga0496102_0073039 3300048905 Bacteria 3153
141 Ga0496106_0040166 3300048909 Bacteria 3504
142 Ga0496107_0002283 3300048910 Bacteria 12378
143 Ga0496108_0002173 3300048911 Bacteria 15728
144 Ga0496109_0011624 3300048912 Bacteria 7571
145 Ga0496109_0018211 3300048912 Bacteria 6167
146 Ga0496110_0000635 3300048913 Bacteria 24059
147 Ga0496110_0022835 3300048913 Bacteria 5315
148 Ga0496110_0027483 3300048913 Bacteria 4878
149 Ga0496111_0001094 3300048914 Bacteria 14996
150 Ga0496113_0064227 3300048916 Bacteria 2775
151 Ga0496114_0006214 3300048917 Bacteria 9406
152 Ga0501305_002721 3300049161 Bacteria 1936
153 Ga0501305_003942 3300049161 Bacteria 1714
154 Ga0501032_0019407 3300049569 Bacteria 4756
155 Ga0501036_0003142 3300049572 Bacteria 13171
156 Ga0501036_0059959 3300049572 Bacteria 3224
157 Ga0501036_0072413 3300049572 Bacteria 2913
158 Ga0501038_0006492 3300049574 Bacteria 10824
159 Ga0501039_0031031 3300049575 Bacteria 4120
160 Ga0501040_0059840 3300049576 Bacteria 2617
161 Ga0501041_0051428 3300049577 Bacteria 2511
162 Ga0501042_0004769 3300049578 Bacteria 8657
163 Ga0501043_0029575 3300049579 Bacteria 4305
164 Ga0501043_0148513 3300049579 Bacteria 1835
165 Ga0501047_0052300 3300049581 Bacteria 3948
166 Ga0501048_0070237 3300049582 Bacteria 2474
167 Ga0501067_0031947 3300049583 Bacteria 2921
168 Ga0501070_0026923 3300049586 Bacteria 4822
169 Ga0501070_0067408 3300049586 Bacteria 2964
170 Ga0501071_0001335 3300049587 Bacteria 14083
171 Ga0501072_0026784 3300049588 Bacteria 4497
172 Ga0501073_0027354 3300049589 Bacteria 4078
173 Ga0501076_0013117 3300049592 Bacteria 6204
174 Ga0501077_0068149 3300049593 Bacteria 2256
175 Ga0501080_0060817 3300049742 Bacteria 3516
176 Ga0501080_0171671 3300049742 Bacteria 2000
177 Ga0501081_0073344 3300049743 Bacteria 2387
178 Ga0501035_0101489 3300049822 Bacteria 2525
179 Ga0501044_0000602 3300049823 Bacteria 43645
180 Ga0501044_0002162 3300049823 Bacteria 22530
181 Ga0501044_0036959 3300049823 Bacteria 5106
182 Ga0501045_0053818 3300049824 Bacteria 2941
183 nmdc:mga03683_18887_c1 3300050489 Bacteria 2626
184 nmdc:mga03683_24272_c1 3300050489 Bacteria 2371
185 nmdc:mga06z11_14905_c1 3300050494 Bacteria 3455
186 nmdc:mga07m45_2469_c1 3300050496 Bacteria 6120
187 nmdc:mga07m45_73892_c1 3300050496 Bacteria 1941
188 nmdc:mga05p37_2513_c1 3300050507 Bacteria 21315
189 nmdc:mga05p37_98197_c1 3300050507 Bacteria 3607
190 nmdc:mga06r32_10257_c1 3300050510 Bacteria 8452
191 nmdc:mga06r32_693_c1 3300050510 Bacteria 29366
192 nmdc:mga0n895_107899_c1 3300050512 Bacteria 2798
193 nmdc:mga0n895_124511_c1 3300050512 Bacteria 2601
194 nmdc:mga0n895_74445_c1 3300050512 Bacteria 3373
195 nmdc:mga0n895_7445_c1 3300050512 Bacteria 9394
196 nmdc:mga0n895_8821_c1 3300050512 Bacteria 8773
197 nmdc:mga0rr50_24336_c1 3300050513 Bacteria 4193
198 nmdc:mga0rr50_38372_c1 3300050513 Bacteria 3465
199 nmdc:mga08x19_69125_c1 3300050514 Bacteria 2300
200 nmdc:mga0a205_114215_c1 3300050515 Bacteria 2599
201 nmdc:mga0a205_128_c1 3300050515 Bacteria 46647
202 nmdc:mga0a205_19453_c1 3300050515 Bacteria 6401
203 nmdc:mga0a205_51516_c1 3300050515 Bacteria 3974
204 Ga0495619_0005300 3300053085 Bacteria 8169
205 Ga0495619_0094934 3300053085 Bacteria 2023
206 Ga0500616_0002631 3300053153 Bacteria 14641
207 Ga0501084_0003607 3300054114 Bacteria 12568
208 Ga0501084_0058333 3300054114 Bacteria 3230
209 Ga0530510_0001094 3300061734 Bacteria 17978
210 Ga0530510_0010794 3300061734 Bacteria 6409
211 Ga0530510_0022786 3300061734 Bacteria 4462
212 2601641281 2600255286 Bacteria 5390125
213 2672338755 2671180330 Bacteria 5521719
214 2738815839 2738541295 Bacteria 5730091
215 2816865319 2816332186 Bacteria 5331395
216 2842687606 2842682962 Bacteria 5589973
217 2849143021 2849139964 Bacteria 5613304
218 2857583079 2857581216 Bacteria 5522813
219 2881715026 2881714928 Bacteria 2469486
220 2887631853 2887630918 Bacteria 3239855
221 2936364349 2936361878 Bacteria 5632809
222 8054360301 8054357960 Bacteria 2867777
223 8057633243 8057632132 Bacteria 4726859
224 Ga0081538_10040234
225 Ga0065712_10076896
226 Ga0065715_10109785
227 Ga0070670_100005816
228 Ga0068869_100021683
229 Ga0070680_100046097
230 Ga0070660_100009274
231 Ga0070689_100001306
232 Ga0070691_10024370
233 Ga0070692_10036851
234 Ga0070705_100031266
235 Ga0070685_10021087
236 Ga0070706_100006918
237 Ga0070707_100011526
238 Ga0070707_100096112
239 Ga0070698_100033236
240 Ga0070699_100003713
241 Ga0070697_100001509
242 Ga0070696_100058850
243 Ga0070665_100035109
244 Ga0070704_100005146
245 Ga0068856_100166483
246 Ga0068859_100000010
247 Ga0068864_100065262
248 Ga0068858_100049392
249 Ga0068860_100016890
250 Ga0068862_100033405
251 Ga0081455_10002534
252 Ga0081538_10019688
253 Ga0081539_10002954
254 Ga0081539_10021470
255 Ga0075363_100031395
256 Ga0070712_100022529
257 Ga0075367_10030473
258 Ga0075369_10000205
259 Ga0075370_10063632
260 Ga0075428_100010709
261 Ga0075428_100033648
262 Ga0075428_100109494
263 Ga0075431_100012222
264 Ga0075431_100030863
265 Ga0075433_10002867
266 Ga0075433_10011130
267 Ga0075433_10046170
268 Ga0075433_10068115
269 Ga0075433_10175134
270 Ga0075434_100013066
271 Ga0075434_100015150
272 Ga0075434_100056829
273 Ga0097620_100000010
274 Ga0075435_100024746
275 Ga0111539_10007357
276 Ga0114129_10002642
277 Ga0114129_10122120
278 Ga0105243_10023937
279 Ga0105238_10052498
280 Ga0105249_10032650
281 Ga0105249_10102275
282 Ga0157370_10001951
283 Ga0157374_10006194
284 Ga0163163_10063221
285 Ga0157380_10076508
286 Ga0207684_10002407
287 Ga0207693_10001524
288 Ga0207657_10016826
289 Ga0207694_10014002
290 Ga0207689_10100882
291 Ga0207661_10042446
292 Ga0207708_10063198
293 Ga0207702_10142439
294 Ga0207676_10018353
295 Ga0207676_10154008
296 Ga0207674_10026071
297 Ga0268266_10006238
298 Ga0268264_10006791
299 Ga0265319_1000692
300 Ga0265334_10005620
301 Ga0265338_10043040
302 Ga0265320_10003885
303 Ga0265325_10043086
304 Ga0265329_10009014
305 Ga0265331_10029355
306 Ga0265316_10083062
307 Ga0265313_10018990
308 Ga0316575_10019601
309 Ga0265314_10058694
310 Ga0316576_10000056
311 Ga0316576_10007768
312 Ga0316576_10015711
313 Ga0316576_10021136
314 Ga0316576_10023927
315 Ga0316578_10055335
316 Ga0316577_10022773
317 Ga0316577_10023960
318 Ga0373939_0004774
319 Ga0373954_0005766
320 Ga0316574_0004684
321 Ga0316574_0005275
322 Ga0316574_0005979
323 Ga0316574_0023855
324 Ga0316574_0026542
325 Ga0316574_0079773
326 Ga0373931_0002031
327 Ga0316582_0002243
328 Ga0316582_0031705
329 Ga0316584_0131893
330 Ga0395900_0059971
331 Ga0395900_0098721
332 Ga0395901_0228027
333 Ga0400484_36421
334 Ga0400490_42392
335 Ga0400490_60236
336 Ga0242420_002099
337 Ga0400483_026829
338 Ga0400483_027279
339 Ga0400483_035407
340 Ga0400483_076055
341 Ga0400483_153267
342 Ga0400483_246070
343 Ga0436360_0733782
344 Ga0451577_0000151
345 Ga0451577_0040778
346 Ga0453683_0000007
347 Ga0453683_0000145
348 Ga0466963_0042679
349 Ga0453684_0000424
350 Ga0453684_0003180
351 Ga0453684_0126649
352 Ga0451576_0000653
353 Ga0451576_0124815
354 Ga0466967_0006939
355 Ga0495638_0012500
356 Ga0495580_0010419
357 Ga0495664_0102529
358 Ga0495628_0031198
359 Ga0495628_0087325
360 Ga0495672_0001971
361 Ga0496100_0004395
362 Ga0496101_0006203
363 Ga0496102_0073039
364 Ga0496106_0040166
365 Ga0496107_0002283
366 Ga0496108_0002173
367 Ga0496109_0011624
368 Ga0496109_0018211
369 Ga0496110_0000635
370 Ga0496110_0022835
371 Ga0496110_0027483
372 Ga0496111_0001094
373 Ga0496113_0064227
374 Ga0496114_0006214
375 Ga0501305_002721
376 Ga0501305_003942
377 Ga0501032_0019407
378 Ga0501036_0003142
379 Ga0501036_0059959
380 Ga0501036_0072413
381 Ga0501038_0006492
382 Ga0501039_0031031
383 Ga0501040_0059840
384 Ga0501041_0051428
385 Ga0501042_0004769
386 Ga0501043_0029575
387 Ga0501043_0148513
388 Ga0501047_0052300
389 Ga0501048_0070237
390 Ga0501067_0031947
391 Ga0501070_0026923
392 Ga0501070_0067408
393 Ga0501071_0001335
394 Ga0501072_0026784
395 Ga0501073_0027354
396 Ga0501076_0013117
397 Ga0501077_0068149
398 Ga0501080_0060817
399 Ga0501080_0171671
400 Ga0501081_0073344
401 Ga0501035_0101489
402 Ga0501044_0000602
403 Ga0501044_0002162
404 Ga0501044_0036959
405 Ga0501045_0053818
406 nmdc:mga03683_18887_c1
407 nmdc:mga03683_24272_c1
408 nmdc:mga06z11_14905_c1
409 nmdc:mga07m45_2469_c1
410 nmdc:mga07m45_73892_c1
411 nmdc:mga05p37_2513_c1
412 nmdc:mga05p37_98197_c1
413 nmdc:mga06r32_10257_c1
414 nmdc:mga06r32_693_c1
415 nmdc:mga0n895_107899_c1
416 nmdc:mga0n895_124511_c1
417 nmdc:mga0n895_74445_c1
418 nmdc:mga0n895_7445_c1
419 nmdc:mga0n895_8821_c1
420 nmdc:mga0rr50_24336_c1
421 nmdc:mga0rr50_38372_c1
422 nmdc:mga08x19_69125_c1
423 nmdc:mga0a205_114215_c1
424 nmdc:mga0a205_128_c1
425 nmdc:mga0a205_19453_c1
426 nmdc:mga0a205_51516_c1
427 Ga0495619_0005300
428 Ga0495619_0094934
429 Ga0500616_0002631
430 Ga0501084_0003607
431 Ga0501084_0058333
432 Ga0530510_0001094
433 Ga0530510_0010794
434 Ga0530510_0022786
435 2601641281
436 2672338755
437 2738815839
438 2816865319
439 2842687606
440 2849143021
441 2857583079
442 2881715026
443 2887631853
444 2936364349
445 8054360301
446 8057633243

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03950

tRNA-synt_1c_C

tRNA synthetases class I (E and Q), anti-codon binding domain

405

505

0.98

PF00749

tRNA-synt_1c

tRNA synthetases class I (E and Q), catalytic domain

99

403

0.97

PF20974

tRNA-synt_1c_C2

tRNA synthetases class I (E and Q), anti-codon binding domain

522

595

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jyz-assembly1.cif.gz_A crystal structure of e. coli glutaminyl-trna synthetase bound to atp and native trna(gln) containing the cmnm5s2u34 anticodon wobble base 0.9757 20 562
4jyz-assembly1.cif.gz_A crystal structure of e. coli glutaminyl-trna synthetase bound to atp and native trna(gln) containing the cmnm5s2u34 anticodon wobble base 0.9739 20 562
4jxx-assembly1.cif.gz_A crystal structure of e coli e. coli glutaminyl-trna synthetase bound to trna(gln)(cug) and atp from novel cryostabilization conditions 0.9738 20 562
1qrt-assembly1.cif.gz_A glutaminyl-trna synthetase mutant d235g complexed with glutamine transfer rna 0.9738 21 560
1qrs-assembly1.cif.gz_A glutaminyl-trna synthetase mutant d235n complexed with glutamine transfer rna 0.9735 21 560
ID Description Score Start End Superfamily
1gtrA03 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.9936 274 350 1.10.1160.10
af_Q8BML9_683_770_2.40.240.10 Mainly Beta;Beta Barrel;Ribosomal Protein L25; Chain P;Ribosomal Protein L25; Chain P 0.9703 479 560 2.40.240.10
af_A4I608_275_352_1.10.1160.10 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.9618 274 349 1.10.1160.10
af_O13775_172_516_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9612 40 355 3.40.50.620
af_F1QP23_424_501_1.10.1160.10 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.9606 274 350 1.10.1160.10
ID Description Score Start End GO Terms
AF-A0A3D2U6D0-F1-model_v4 Glutamine--tRNA ligase (EC 6.1.1.18) 0.9928 314 440 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A536SHX0-F1-model_v4 Glutamine--tRNA ligase (EC 6.1.1.18) 0.9919 40 159 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-X0TWX5-F1-model_v4 Glutamyl/glutaminyl-tRNA synthetase class Ib anti-codon binding domain-containing protein 0.9912 266 546 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A1G2VY94-F1-model_v4 Uncharacterized protein 0.9911 357 563 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A090SBN7-F1-model_v4 deleted 0.9889 112 195

Map