F334571

General Info

Members Datasets Scaffolds Average Seq Length
222 128 444 194

Family's Representative Sequence

Representative Sequence 3300026078|Ga0207702_10667132|Ga0207702_106671321
Length 222
Sequence MRTGASLGRPEVGARARTGSINARPARELVMRYGKDQKQATRQRIVEAAGRRFKQDGIDGAGVAAVMSDAGLTNGAFYGHFSSKEDLVANVLADQLRAQRHSLDSQPSDRAGLEAFIRSYLSPQHRDQCADGCPSAALLDEIARRPAATRQVFTDELMAVIDDIAARLEPTDVGAARTDALTLFGLMLGTLQLARALTDRNLSDQLLARGMETALKLLNDRA

Samples

Sample ID Description Type Environment
1 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
12 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
15 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
21 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
22 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
33 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
49 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
52 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
53 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
60 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
61 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
69 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
70 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
71 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
72 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
73 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
74 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
75 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
76 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
77 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
81 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
82 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
83 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
84 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
85 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
86 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
87 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
88 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
91 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
92 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
93 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
94 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
97 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
98 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
99 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
103 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
110 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
111 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
115 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
119 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
120 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
121 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
122 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
123 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
126 2738541264 Mycobacterium sp. OK889 Isolate Unclassified
127 2738541356 Mycobacterium sp. OK887 Isolate Unclassified
128 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.2
Metatranscriptomes 0.45
Isolates 1.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.35
Nodule 0
Rhizoplane 13.96
Rhizosphere 80.63
Stem 0
Stem Tuber 0
Unclassified 2.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207702_10667132 3300026078 Bacteria 1023
2 Ga0070683_100485312 3300005329 Unclassified 1180
3 Ga0070709_10747770 3300005434 Bacteria 764
4 Ga0070714_100010953 3300005435 Bacteria 7183
5 Ga0070714_100018697 3300005435 Bacteria 5636
6 Ga0070714_100079933 3300005435 Bacteria 2844
7 Ga0070714_100111581 3300005435 Bacteria 2422
8 Ga0070713_100569998 3300005436 Bacteria 1073
9 Ga0070713_100609417 3300005436 Bacteria 1038
10 Ga0070711_100007836 3300005439 Bacteria 6510
11 Ga0070711_100146602 3300005439 Bacteria 1776
12 Ga0070711_100259641 3300005439 Bacteria 1366
13 Ga0070678_100389973 3300005456 Bacteria 1207
14 Ga0070684_100200363 3300005535 Bacteria 1818
15 Ga0068854_100371710 3300005578 Bacteria 1176
16 Ga0068864_100345848 3300005618 Bacteria 1402
17 Ga0068864_100517355 3300005618 Bacteria 1150
18 Ga0081538_10008889 3300005981 Bacteria 8451
19 Ga0081538_10050526 3300005981 Bacteria 2509
20 Ga0081539_10011856 3300005985 Bacteria 6815
21 Ga0070717_10209927 3300006028 Bacteria 1708
22 Ga0075368_10034320 3300006042 Bacteria 1977
23 Ga0070712_100002689 3300006175 Bacteria 10968
24 Ga0070712_100053349 3300006175 Bacteria 2822
25 Ga0070712_100274448 3300006175 Bacteria 1356
26 Ga0070712_100716488 3300006175 Bacteria 854
27 Ga0075428_100328559 3300006844 Bacteria 1643
28 Ga0075428_100883051 3300006844 Bacteria 949
29 Ga0075431_100018155 3300006847 Bacteria 7157
30 Ga0075433_10016433 3300006852 Bacteria 6100
31 Ga0075433_10559370 3300006852 Bacteria 1005
32 Ga0075434_100085263 3300006871 Bacteria 3158
33 Ga0075434_100159068 3300006871 Bacteria 2278
34 Ga0075434_101353478 3300006871 Bacteria 722
35 Ga0068865_100567176 3300006881 Bacteria 955
36 Ga0075436_100006471 3300006914 Bacteria 8024
37 Ga0075435_100010044 3300007076 Bacteria 6902
38 Ga0111539_10009649 3300009094 Bacteria 12184
39 Ga0111539_10043186 3300009094 Bacteria 5405
40 Ga0105245_10067494 3300009098 Bacteria 3239
41 Ga0114129_10181340 3300009147 Bacteria 2864
42 Ga0114129_10499614 3300009147 Bacteria 1589
43 Ga0105242_11450380 3300009176 Bacteria 715
44 Ga0105248_10674867 3300009177 Bacteria 1166
45 Ga0105239_10679792 3300010375 Bacteria 1176
46 Ga0105239_10844236 3300010375 Bacteria 1050
47 Ga0157369_11554272 3300013105 Bacteria 673
48 Ga0157372_10612776 3300013307 Bacteria 1269
49 Ga0157372_11044565 3300013307 Bacteria 946
50 Ga0157380_10154981 3300014326 Bacteria 1984
51 Ga0213872_10097877 3300021361 Bacteria 1309
52 Ga0213872_10106547 3300021361 Bacteria 1247
53 Ga0207699_10124628 3300025906 Bacteria 1671
54 Ga0207699_10142280 3300025906 Bacteria 1578
55 Ga0207693_10005229 3300025915 Bacteria 10859
56 Ga0207693_10009025 3300025915 Bacteria 8136
57 Ga0207693_10656751 3300025915 Bacteria 814
58 Ga0207663_10002989 3300025916 Bacteria 8183
59 Ga0207663_10082934 3300025916 Bacteria 2105
60 Ga0207663_10247592 3300025916 Bacteria 1310
61 Ga0207687_10330846 3300025927 Bacteria 1236
62 Ga0207687_10332367 3300025927 Bacteria 1233
63 Ga0207700_10108661 3300025928 Bacteria 2228
64 Ga0207700_10387397 3300025928 Bacteria 1223
65 Ga0207664_10005867 3300025929 Bacteria 8397
66 Ga0207664_10011858 3300025929 Bacteria 6217
67 Ga0207664_10042125 3300025929 Bacteria 3562
68 Ga0207709_10543276 3300025935 Bacteria 913
69 Ga0207691_10755805 3300025940 Bacteria 818
70 Ga0207711_10761432 3300025941 Bacteria 902
71 Ga0207679_10357869 3300025945 Bacteria 1274
72 Ga0207679_10455176 3300025945 Bacteria 1136
73 Ga0207676_10381581 3300026095 Bacteria 1312
74 Ga0207698_10390175 3300026142 Bacteria 1327
75 Ga0207698_10897132 3300026142 Bacteria 893
76 Ga0209966_1018648 3300027695 Bacteria 1331
77 Ga0209813_10132762 3300027866 Unclassified 877
78 Ga0207428_10062362 3300027907 Bacteria 2948
79 Ga0265327_10000604 3300031251 Bacteria 59613
80 Ga0307408_100085515 3300031548 Bacteria 2368
81 Ga0307408_100174477 3300031548 Bacteria 1719
82 Ga0307405_10041620 3300031731 Bacteria 2791
83 Ga0307405_10083769 3300031731 Bacteria 2091
84 Ga0307405_11153769 3300031731 Bacteria 668
85 Ga0307413_10199425 3300031824 Bacteria 1444
86 Ga0307410_10003725 3300031852 Bacteria 7721
87 Ga0307410_10208262 3300031852 Bacteria 1497
88 Ga0307406_10000178 3300031901 Bacteria 38000
89 Ga0307406_10018840 3300031901 Bacteria 4041
90 Ga0307407_10066623 3300031903 Bacteria 2125
91 Ga0307412_10105041 3300031911 Bacteria 2005
92 Ga0307409_100000015 3300031995 Bacteria 61871
93 Ga0307409_100067811 3300031995 Unclassified 2819
94 Ga0307409_100107306 3300031995 Bacteria 2332
95 Ga0307409_100525932 3300031995 Bacteria 1156
96 Ga0307409_101032423 3300031995 Bacteria 841
97 Ga0307409_101322621 3300031995 Bacteria 746
98 Ga0307416_100000138 3300032002 Bacteria 42771
99 Ga0307416_100022365 3300032002 Bacteria 4562
100 Ga0307416_100026093 3300032002 Bacteria 4298
101 Ga0307416_100050932 3300032002 Bacteria 3304
102 Ga0307416_100079771 3300032002 Bacteria 2760
103 Ga0307416_100590511 3300032002 Bacteria 1189
104 Ga0307416_100633807 3300032002 Bacteria 1152
105 Ga0307414_10024081 3300032004 Bacteria 3875
106 Ga0307411_10058826 3300032005 Bacteria 2545
107 Ga0307411_10433220 3300032005 Bacteria 1095
108 Ga0307415_100080311 3300032126 Bacteria 2326
109 Ga0307415_100148257 3300032126 Bacteria 1802
110 Ga0307415_100573697 3300032126 Bacteria 999
111 Ga0307415_101025215 3300032126 Bacteria 768
112 Ga0395899_0074338 3300037312 Bacteria 2483
113 Ga0395900_0007284 3300037418 Bacteria 11448
114 Ga0395900_0217635 3300037418 Bacteria 1927
115 Ga0395900_0308740 3300037418 Bacteria 1565
116 Ga0395900_0676831 3300037418 Bacteria 967
117 Ga0395900_0791520 3300037418 Bacteria 877
118 Ga0395900_1134952 3300037418 Bacteria 698
119 Ga0395900_1284631 3300037418 Bacteria 646
120 Ga0395898_0020624 3300037466 Bacteria 6694
121 Ga0395898_0032901 3300037466 Bacteria 5176
122 Ga0395898_0130143 3300037466 Bacteria 2411
123 Ga0395898_0301546 3300037466 Bacteria 1528
124 Ga0395898_0429165 3300037466 Bacteria 1259
125 Ga0395905_0005830 3300037471 Bacteria 12516
126 Ga0395905_0200359 3300037471 Bacteria 1872
127 Ga0395905_0535708 3300037471 Bacteria 1072
128 Ga0395905_0917217 3300037471 Bacteria 779
129 Ga0436364_0683640 3300037853 Bacteria 8300
130 Ga0395901_0001186 3300038443 Bacteria 27723
131 Ga0395901_0002470 3300038443 Bacteria 18760
132 Ga0395901_0270150 3300038443 Bacteria 1769
133 Ga0395901_0441936 3300038443 Bacteria 1331
134 Ga0395901_0612044 3300038443 Bacteria 1097
135 Ga0395901_1002092 3300038443 Unclassified 811
136 Ga0436365_0453641 3300039437 Bacteria 2471
137 Ga0436361_0531392 3300039447 Bacteria 2955
138 Ga0436363_0499937 3300039450 Bacteria 5639
139 Ga0436363_0784909 3300039450 Bacteria 2110
140 Ga0451791_1739813 3300041451 Bacteria 1744
141 Ga0451797_0979474 3300041453 Bacteria 1174
142 Ga0439454_007256 3300042011 Bacteria 1384
143 Ga0439454_009783 3300042011 Bacteria 1252
144 Ga0450888_008351 3300042126 Bacteria 1165
145 Ga0439459_0069331 3300042438 Bacteria 813
146 Ga0439464_0067410 3300042439 Bacteria 1055
147 Ga0439460_0126073 3300042461 Bacteria 841
148 Ga0439440_0140864 3300042993 Bacteria 685
149 Ga0466966_0191000 3300044684 Bacteria 1241
150 Ga0466957_0482680 3300044842 Bacteria 857
151 Ga0466959_0253482 3300045049 Bacteria 1213
152 Ga0466959_0363245 3300045049 Bacteria 986
153 Ga0495582_0086847 3300046473 Bacteria 1741
154 Ga0495584_0175360 3300046491 Bacteria 1090
155 Ga0495618_0063577 3300046514 Bacteria 2344
156 Ga0495620_0025716 3300046515 Bacteria 2780
157 Ga0495620_0220652 3300046515 Bacteria 726
158 Ga0495630_0958445 3300046517 Bacteria 651
159 Ga0495637_0223862 3300046520 Bacteria 684
160 Ga0495654_0246036 3300046530 Bacteria 747
161 Ga0495640_0357842 3300046533 Bacteria 900
162 Ga0495587_0237441 3300046536 Bacteria 1026
163 Ga0495667_0169517 3300046559 Bacteria 1403
164 Ga0495656_0316841 3300046615 Bacteria 802
165 Ga0495611_0114764 3300046648 Bacteria 1255
166 Ga0495661_0060147 3300046665 Bacteria 2258
167 Ga0495649_0249210 3300046694 Bacteria 913
168 Ga0495660_0216707 3300046810 Bacteria 905
169 Ga0495686_0000011 3300047472 Bacteria 514750
170 Ga0495615_0042974 3300048090 Bacteria 1136
171 Ga0496100_0569274 3300048903 Bacteria 878
172 Ga0496101_0012184 3300048904 Bacteria 5732
173 Ga0496101_0020515 3300048904 Bacteria 4526
174 Ga0496101_0105954 3300048904 Bacteria 2111
175 Ga0496104_0005068 3300048907 Bacteria 11493
176 Ga0496104_0326507 3300048907 Bacteria 1447
177 Ga0496104_0341170 3300048907 Bacteria 1411
178 Ga0496105_0002570 3300048908 Bacteria 13185
179 Ga0496105_0110345 3300048908 Bacteria 2271
180 Ga0496105_0402049 3300048908 Bacteria 1087
181 Ga0496106_0146026 3300048909 Bacteria 1863
182 Ga0496107_0042258 3300048910 Bacteria 3274
183 Ga0496107_0115352 3300048910 Bacteria 1977
184 Ga0496108_0390301 3300048911 Bacteria 1216
185 Ga0496109_0117147 3300048912 Bacteria 2479
186 Ga0496109_0690349 3300048912 Bacteria 958
187 Ga0496110_0095862 3300048913 Bacteria 2658
188 Ga0496110_0104595 3300048913 Bacteria 2540
189 Ga0496110_0217345 3300048913 Bacteria 1738
190 Ga0496110_1010983 3300048913 Bacteria 739
191 Ga0496112_0021251 3300048915 Bacteria 6169
192 Ga0496112_0041658 3300048915 Bacteria 4493
193 Ga0496112_0042113 3300048915 Bacteria 4468
194 Ga0496112_0300911 3300048915 Bacteria 1549
195 Ga0496112_0694135 3300048915 Unclassified 946
196 Ga0496113_0039488 3300048916 Bacteria 3474
197 Ga0496113_0235895 3300048916 Bacteria 1459
198 Ga0496113_0586484 3300048916 Unclassified 893
199 Ga0496113_0636017 3300048916 Bacteria 853
200 Ga0496122_0023927 3300048925 Bacteria 5363
201 Ga0496123_0037007 3300048926 Bacteria 3451
202 Ga0501321_007629 3300049537 Bacteria 1128
203 Ga0501043_0637406 3300049579 Bacteria 784
204 Ga0501072_0027679 3300049588 Bacteria 4422
205 Ga0501079_0128124 3300049741 Bacteria 1975
206 nmdc:mga00v17_16911_c1 3300050491 Bacteria 4118
207 nmdc:mga06r32_178277_c1 3300050510 Bacteria 2110
208 nmdc:mga08y16_15397_c1 3300050511 Bacteria 8044
209 nmdc:mga08y16_51615_c1 3300050511 Bacteria 4303
210 nmdc:mga0n895_18471_c1 3300050512 Bacteria 6453
211 nmdc:mga0n895_24062_c1 3300050512 Bacteria 5734
212 nmdc:mga0rr50_4275_c1 3300050513 Bacteria 8361
213 nmdc:mga08x19_91353_c1 3300050514 Bacteria 2010
214 nmdc:mga0a205_3393_c1 3300050515 Bacteria 14196
215 nmdc:mga0a205_37135_c1 3300050515 Bacteria 4683
216 Ga0495655_0118269 3300053083 Bacteria 804
217 Ga0495619_0231313 3300053085 Bacteria 1281
218 Ga0501084_0088052 3300054114 Bacteria 2607
219 Ga0530510_0089074 3300061734 Bacteria 2250
220 2738664469 2738541264 Bacteria 5935393
221 2739143604 2738541356 Bacteria 5935017
222 2870784178 2870782633 Bacteria 9624083
223 Ga0207702_10667132
224 Ga0070683_100485312
225 Ga0070709_10747770
226 Ga0070714_100010953
227 Ga0070714_100018697
228 Ga0070714_100079933
229 Ga0070714_100111581
230 Ga0070713_100569998
231 Ga0070713_100609417
232 Ga0070711_100007836
233 Ga0070711_100146602
234 Ga0070711_100259641
235 Ga0070678_100389973
236 Ga0070684_100200363
237 Ga0068854_100371710
238 Ga0068864_100345848
239 Ga0068864_100517355
240 Ga0081538_10008889
241 Ga0081538_10050526
242 Ga0081539_10011856
243 Ga0070717_10209927
244 Ga0075368_10034320
245 Ga0070712_100002689
246 Ga0070712_100053349
247 Ga0070712_100274448
248 Ga0070712_100716488
249 Ga0075428_100328559
250 Ga0075428_100883051
251 Ga0075431_100018155
252 Ga0075433_10016433
253 Ga0075433_10559370
254 Ga0075434_100085263
255 Ga0075434_100159068
256 Ga0075434_101353478
257 Ga0068865_100567176
258 Ga0075436_100006471
259 Ga0075435_100010044
260 Ga0111539_10009649
261 Ga0111539_10043186
262 Ga0105245_10067494
263 Ga0114129_10181340
264 Ga0114129_10499614
265 Ga0105242_11450380
266 Ga0105248_10674867
267 Ga0105239_10679792
268 Ga0105239_10844236
269 Ga0157369_11554272
270 Ga0157372_10612776
271 Ga0157372_11044565
272 Ga0157380_10154981
273 Ga0213872_10097877
274 Ga0213872_10106547
275 Ga0207699_10124628
276 Ga0207699_10142280
277 Ga0207693_10005229
278 Ga0207693_10009025
279 Ga0207693_10656751
280 Ga0207663_10002989
281 Ga0207663_10082934
282 Ga0207663_10247592
283 Ga0207687_10330846
284 Ga0207687_10332367
285 Ga0207700_10108661
286 Ga0207700_10387397
287 Ga0207664_10005867
288 Ga0207664_10011858
289 Ga0207664_10042125
290 Ga0207709_10543276
291 Ga0207691_10755805
292 Ga0207711_10761432
293 Ga0207679_10357869
294 Ga0207679_10455176
295 Ga0207676_10381581
296 Ga0207698_10390175
297 Ga0207698_10897132
298 Ga0209966_1018648
299 Ga0209813_10132762
300 Ga0207428_10062362
301 Ga0265327_10000604
302 Ga0307408_100085515
303 Ga0307408_100174477
304 Ga0307405_10041620
305 Ga0307405_10083769
306 Ga0307405_11153769
307 Ga0307413_10199425
308 Ga0307410_10003725
309 Ga0307410_10208262
310 Ga0307406_10000178
311 Ga0307406_10018840
312 Ga0307407_10066623
313 Ga0307412_10105041
314 Ga0307409_100000015
315 Ga0307409_100067811
316 Ga0307409_100107306
317 Ga0307409_100525932
318 Ga0307409_101032423
319 Ga0307409_101322621
320 Ga0307416_100000138
321 Ga0307416_100022365
322 Ga0307416_100026093
323 Ga0307416_100050932
324 Ga0307416_100079771
325 Ga0307416_100590511
326 Ga0307416_100633807
327 Ga0307414_10024081
328 Ga0307411_10058826
329 Ga0307411_10433220
330 Ga0307415_100080311
331 Ga0307415_100148257
332 Ga0307415_100573697
333 Ga0307415_101025215
334 Ga0395899_0074338
335 Ga0395900_0007284
336 Ga0395900_0217635
337 Ga0395900_0308740
338 Ga0395900_0676831
339 Ga0395900_0791520
340 Ga0395900_1134952
341 Ga0395900_1284631
342 Ga0395898_0020624
343 Ga0395898_0032901
344 Ga0395898_0130143
345 Ga0395898_0301546
346 Ga0395898_0429165
347 Ga0395905_0005830
348 Ga0395905_0200359
349 Ga0395905_0535708
350 Ga0395905_0917217
351 Ga0436364_0683640
352 Ga0395901_0001186
353 Ga0395901_0002470
354 Ga0395901_0270150
355 Ga0395901_0441936
356 Ga0395901_0612044
357 Ga0395901_1002092
358 Ga0436365_0453641
359 Ga0436361_0531392
360 Ga0436363_0499937
361 Ga0436363_0784909
362 Ga0451791_1739813
363 Ga0451797_0979474
364 Ga0439454_007256
365 Ga0439454_009783
366 Ga0450888_008351
367 Ga0439459_0069331
368 Ga0439464_0067410
369 Ga0439460_0126073
370 Ga0439440_0140864
371 Ga0466966_0191000
372 Ga0466957_0482680
373 Ga0466959_0253482
374 Ga0466959_0363245
375 Ga0495582_0086847
376 Ga0495584_0175360
377 Ga0495618_0063577
378 Ga0495620_0025716
379 Ga0495620_0220652
380 Ga0495630_0958445
381 Ga0495637_0223862
382 Ga0495654_0246036
383 Ga0495640_0357842
384 Ga0495587_0237441
385 Ga0495667_0169517
386 Ga0495656_0316841
387 Ga0495611_0114764
388 Ga0495661_0060147
389 Ga0495649_0249210
390 Ga0495660_0216707
391 Ga0495686_0000011
392 Ga0495615_0042974
393 Ga0496100_0569274
394 Ga0496101_0012184
395 Ga0496101_0020515
396 Ga0496101_0105954
397 Ga0496104_0005068
398 Ga0496104_0326507
399 Ga0496104_0341170
400 Ga0496105_0002570
401 Ga0496105_0110345
402 Ga0496105_0402049
403 Ga0496106_0146026
404 Ga0496107_0042258
405 Ga0496107_0115352
406 Ga0496108_0390301
407 Ga0496109_0117147
408 Ga0496109_0690349
409 Ga0496110_0095862
410 Ga0496110_0104595
411 Ga0496110_0217345
412 Ga0496110_1010983
413 Ga0496112_0021251
414 Ga0496112_0041658
415 Ga0496112_0042113
416 Ga0496112_0300911
417 Ga0496112_0694135
418 Ga0496113_0039488
419 Ga0496113_0235895
420 Ga0496113_0586484
421 Ga0496113_0636017
422 Ga0496122_0023927
423 Ga0496123_0037007
424 Ga0501321_007629
425 Ga0501043_0637406
426 Ga0501072_0027679
427 Ga0501079_0128124
428 nmdc:mga00v17_16911_c1
429 nmdc:mga06r32_178277_c1
430 nmdc:mga08y16_15397_c1
431 nmdc:mga08y16_51615_c1
432 nmdc:mga0n895_18471_c1
433 nmdc:mga0n895_24062_c1
434 nmdc:mga0rr50_4275_c1
435 nmdc:mga08x19_91353_c1
436 nmdc:mga0a205_3393_c1
437 nmdc:mga0a205_37135_c1
438 Ga0495655_0118269
439 Ga0495619_0231313
440 Ga0501084_0088052
441 Ga0530510_0089074
442 2738664469
443 2739143604
444 2870784178

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

45

91

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4l62-assembly1.cif.gz_C crystal structure of pseudomonas aeruginosa transcriptional regulator pa2196 bound to its operator dna 0.8602 8 187
4yze-assembly1.cif.gz_A crystal structure of e.coli nemr reduced form 0.8364 10 184
2fd5-assembly1.cif.gz_A-2 the crystal structure of a transcriptional regulator from pseudomonas aeruginosa pao1 0.8203 4 184
4yze-assembly2.cif.gz_D crystal structure of e.coli nemr reduced form 0.8167 10 187
4l62-assembly1.cif.gz_C crystal structure of pseudomonas aeruginosa transcriptional regulator pa2196 bound to its operator dna 0.8149 8 187
ID Description Score Start End Superfamily
5mwrB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9787 13 57 1.10.10.60
3whcB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9774 11 53 1.10.10.60
6el2B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.972 11 57 1.10.10.60
3ih3A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9711 11 53 1.10.10.60
4xk4A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9708 10 57 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A536PV53-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9749 37 188 GO:0003677
GO:0006355
AF-A0A5J6II82-F1-model_v4 TetR/AcrR family transcriptional regulator 0.969 1 190 GO:0003677
GO:0006355
AF-A0A5J6EJA6-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9685 1 190 GO:0003677
GO:0006355
AF-A0A1I4Z2L0-F1-model_v4 Transcriptional regulator, TetR family 0.9681 2 189 GO:0003677
GO:0006355
AF-A0A540Q8Q2-F1-model_v4 deleted 0.9674 2 189

Map