F334429

General Info

Members Datasets Scaffolds Average Seq Length
222 148 220 316

Family's Representative Sequence

Representative Sequence 3300009545|Ga0105237_10123837|Ga0105237_101238373
Length 354
Sequence LQAIFVALQQRTVGQASAAGQHGRAVCPADDVAHPAQSVVTMSMHAFYADQFVLPLPPGHSFPMSKYRLLRERLDGEPGLELRQAMPASDGELALAHTPAYVGAVSEGTLSAAMQREIGFPWSEAMVARSRRSVGATIAAARAALVSGVATNLAGGTHHASADKGAGYCVFNDAAVAARLMQAEWHRSHRQLLRVAIVDLDVHQGNGTASIFADDPTVFTLSLHGAKNFPFRKERSDLDVDLPDGCGDAAYLDALDAALAELWRRHADAPPGLVFYVAGADPHEGDRLGRLKLTTAGLAERDRRVLGAARERRIPVALSMAGGYGRVIEDTVQVHLGTIRAAVASWREWNNARP

Samples

Sample ID Description Type Environment
1 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
2 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
10 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
33 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
38 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
39 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
40 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
41 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
44 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
46 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
47 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
60 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
61 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
63 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
96 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
99 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
100 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
101 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
102 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
103 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
104 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
105 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
106 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
107 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
108 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
109 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
110 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
111 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
112 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
115 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
116 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
117 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
118 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
119 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
120 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
121 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
122 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
123 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
124 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
125 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
126 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
127 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
128 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
129 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
130 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
131 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
132 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
133 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
134 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
135 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
136 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
137 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
138 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
139 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
140 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
141 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
142 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
143 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
144 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
145 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
148 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.1
Metatranscriptomes 0
Isolates 0.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.23
Nodule 0
Rhizoplane 0.45
Rhizosphere 63.51
Stem 0
Stem Tuber 0
Unclassified 10.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000689 3300002773 Bacteria 17593
2 JGI25153J46596_10002317 3300003215 Bacteria 11061
3 rootH1_10051283 3300003323 Bacteria 1347
4 Ga0055526_1002637 3300003771 Bacteria 11984
5 Ga0070676_10002065 3300005328 Bacteria 10209
6 Ga0070676_10005519 3300005328 Bacteria 6738
7 Ga0070676_10060999 3300005328 Bacteria 2241
8 Ga0070670_100001786 3300005331 Bacteria 17507
9 Ga0070677_10034887 3300005333 Bacteria 1946
10 Ga0068869_100318314 3300005334 Bacteria 1261
11 Ga0068868_100025535 3300005338 Bacteria 4496
12 Ga0070668_100065155 3300005347 Bacteria 2826
13 Ga0070675_100000908 3300005354 Bacteria 21069
14 Ga0070675_100272253 3300005354 Bacteria 1486
15 Ga0070671_100013507 3300005355 Bacteria 6584
16 Ga0070674_100075841 3300005356 Bacteria 2389
17 Ga0070673_100253961 3300005364 Bacteria 1533
18 Ga0070667_100001640 3300005367 Bacteria 20011
19 Ga0070667_100345098 3300005367 Bacteria 1347
20 Ga0070663_100001001 3300005455 Bacteria 15402
21 Ga0070662_100003301 3300005457 Bacteria 10051
22 Ga0068867_100002785 3300005459 Bacteria 12295
23 Ga0068867_100003245 3300005459 Bacteria 11462
24 Ga0068867_100005055 3300005459 Bacteria 9311
25 Ga0070706_100050147 3300005467 Bacteria 3852
26 Ga0070707_100169976 3300005468 Bacteria 2124
27 Ga0070698_100032901 3300005471 Bacteria 5371
28 Ga0070672_100000447 3300005543 Bacteria 24121
29 Ga0070672_100030738 3300005543 Bacteria 4038
30 Ga0070672_100238407 3300005543 Bacteria 1529
31 Ga0070664_100132662 3300005564 Bacteria 2189
32 Ga0068857_100381778 3300005577 Bacteria 1308
33 Ga0068854_100027620 3300005578 Bacteria 3914
34 Ga0068852_100120030 3300005616 Bacteria 2405
35 Ga0068864_100078008 3300005618 Bacteria 2898
36 Ga0068866_10008994 3300005718 Bacteria 4230
37 Ga0068861_100002083 3300005719 Bacteria 12968
38 Ga0068851_10092353 3300005834 Bacteria 1595
39 Ga0068870_10128496 3300005840 Bacteria 1469
40 Ga0068858_100122186 3300005842 Bacteria 2436
41 Ga0068860_100003217 3300005843 Bacteria 16844
42 Ga0068862_100020847 3300005844 Bacteria 5475
43 Ga0068862_100045918 3300005844 Bacteria 3728
44 Ga0075365_10002815 3300006038 Bacteria 8710
45 Ga0075365_10131279 3300006038 Bacteria 1733
46 Ga0075368_10003440 3300006042 Bacteria 5283
47 Ga0075368_10046461 3300006042 Bacteria 1717
48 Ga0075363_100134733 3300006048 Bacteria 1387
49 Ga0075363_100252753 3300006048 Bacteria 1015
50 Ga0075364_10123896 3300006051 Bacteria 1731
51 Ga0075364_10125072 3300006051 Bacteria 1723
52 Ga0075362_10009457 3300006177 Bacteria 3771
53 Ga0075362_10056962 3300006177 Bacteria 1760
54 Ga0075367_10007127 3300006178 Bacteria 5702
55 Ga0075367_10036645 3300006178 Bacteria 2846
56 Ga0075367_10107675 3300006178 Bacteria 1708
57 Ga0075366_10000472 3300006195 Bacteria 18720
58 Ga0075366_10001795 3300006195 Bacteria 10842
59 Ga0075366_10002871 3300006195 Bacteria 8934
60 Ga0075366_10009187 3300006195 Bacteria 5513
61 Ga0075366_10009193 3300006195 Bacteria 5512
62 Ga0075366_10033200 3300006195 Bacteria 3039
63 Ga0075366_10038345 3300006195 Bacteria 2830
64 Ga0075366_10045674 3300006195 Bacteria 2596
65 Ga0075366_10144548 3300006195 Bacteria 1439
66 Ga0075366_10247403 3300006195 Bacteria 1087
67 Ga0097621_100050724 3300006237 Bacteria 3375
68 Ga0075370_10021208 3300006353 Bacteria 3560
69 Ga0075370_10048794 3300006353 Bacteria 2399
70 Ga0075370_10122223 3300006353 Bacteria 1516
71 Ga0075430_100038755 3300006846 Bacteria 4036
72 Ga0075429_100002218 3300006880 Bacteria 16266
73 Ga0105245_10011416 3300009098 Bacteria 7734
74 Ga0114129_10014882 3300009147 Bacteria 11082
75 Ga0105243_10066459 3300009148 Bacteria 2900
76 Ga0105243_10155711 3300009148 Bacteria 1965
77 Ga0105241_10099288 3300009174 Bacteria 2312
78 Ga0105237_10123837 3300009545 Bacteria 2580
79 Ga0105249_10079010 3300009553 Bacteria 3053
80 Ga0105249_10101085 3300009553 Bacteria 2712
81 Ga0105239_10102223 3300010375 Bacteria 3172
82 Ga0157374_10073928 3300013296 Bacteria 3217
83 Ga0163162_10008791 3300013306 Bacteria 9820
84 Ga0157380_10023770 3300014326 Bacteria 4627
85 Ga0163161_10092744 3300017792 Bacteria 2236
86 Ga0207425_1000315 3300025245 Bacteria 35021
87 Ga0209129_1000644 3300025258 Bacteria 23409
88 Ga0209564_1000029 3300025295 Bacteria 505995
89 Ga0209758_1000043 3300025297 Bacteria 402310
90 Ga0207656_10020776 3300025321 Bacteria 2613
91 Ga0207682_10067788 3300025893 Bacteria 1507
92 Ga0207642_10005647 3300025899 Bacteria 4098
93 Ga0207680_10163199 3300025903 Bacteria 1496
94 Ga0207645_10002710 3300025907 Bacteria 13798
95 Ga0207643_10129904 3300025908 Bacteria 1498
96 Ga0207684_10009174 3300025910 Bacteria 8752
97 Ga0207646_10354261 3300025922 Bacteria 1326
98 Ga0207681_10081814 3300025923 Bacteria 2281
99 Ga0207650_10000783 3300025925 Bacteria 24484
100 Ga0207659_10000307 3300025926 Bacteria 29582
101 Ga0207659_10262428 3300025926 Bacteria 1406
102 Ga0207644_10019772 3300025931 Bacteria 4572
103 Ga0207706_10012708 3300025933 Bacteria 7665
104 Ga0207709_10091743 3300025935 Bacteria 1987
105 Ga0207669_10037550 3300025937 Bacteria 2780
106 Ga0207704_10016524 3300025938 Bacteria 3794
107 Ga0207691_10003997 3300025940 Bacteria 14303
108 Ga0207691_10103830 3300025940 Bacteria 2534
109 Ga0207691_10317676 3300025940 Bacteria 1336
110 Ga0207679_10099928 3300025945 Bacteria 2266
111 Ga0207651_10043196 3300025960 Bacteria 3006
112 Ga0207712_10047775 3300025961 Bacteria 2973
113 Ga0207712_10281236 3300025961 Bacteria 1358
114 Ga0207668_10028263 3300025972 Bacteria 3665
115 Ga0207640_10074218 3300025981 Bacteria 2301
116 Ga0207658_10001138 3300025986 Bacteria 21341
117 Ga0207658_10368677 3300025986 Bacteria 1255
118 Ga0207677_10337775 3300026023 Bacteria 1257
119 Ga0207678_10001091 3300026067 Bacteria 24903
120 Ga0207648_10002165 3300026089 Bacteria 21350
121 Ga0207648_10008882 3300026089 Bacteria 9674
122 Ga0207648_10016219 3300026089 Bacteria 6816
123 Ga0207648_10049613 3300026089 Bacteria 3672
124 Ga0207648_10202526 3300026089 Bacteria 1760
125 Ga0207676_10068440 3300026095 Bacteria 2840
126 Ga0207674_10109651 3300026116 Bacteria 2736
127 Ga0207675_100004351 3300026118 Bacteria 13688
128 Ga0207683_10001684 3300026121 Bacteria 19770
129 Ga0207698_10214964 3300026142 Bacteria 1733
130 Ga0207698_10274500 3300026142 Bacteria 1556
131 Ga0209998_10002769 3300027717 Bacteria 3955
132 Ga0209813_10009308 3300027866 Bacteria 2509
133 Ga0268265_10008781 3300028380 Bacteria 6828
134 Ga0268265_10099805 3300028380 Bacteria 2341
135 Ga0268264_10003397 3300028381 Bacteria 13750
136 Ga0307517_10000150 3300028786 Bacteria 110446
137 Ga0307517_10097516 3300028786 Bacteria 2346
138 Ga0307515_10003609 3300028794 Bacteria 32494
139 Ga0307515_10057158 3300028794 Bacteria 5651
140 Ga0307515_10138264 3300028794 Bacteria 2631
141 Ga0307515_10340224 3300028794 Bacteria 1153
142 Ga0307513_10064492 3300031456 Bacteria 3860
143 Ga0307513_10069180 3300031456 Bacteria 3694
144 Ga0307513_10080893 3300031456 Bacteria 3349
145 Ga0307509_10011064 3300031507 Bacteria 10987
146 Ga0307509_10017922 3300031507 Bacteria 8131
147 Ga0307509_10070643 3300031507 Bacteria 3645
148 Ga0307508_10001937 3300031616 Bacteria 22703
149 Ga0307508_10002030 3300031616 Bacteria 21943
150 Ga0307514_10037093 3300031649 Bacteria 3869
151 Ga0307516_10006499 3300031730 Bacteria 13690
152 Ga0307516_10222196 3300031730 Bacteria 1597
153 Ga0307516_10333480 3300031730 Bacteria 1185
154 Ga0307405_10015716 3300031731 Bacteria 4106
155 Ga0307413_10020602 3300031824 Bacteria 3512
156 Ga0307410_10092073 3300031852 Bacteria 2154
157 Ga0307406_10003869 3300031901 Bacteria 8154
158 Ga0307407_10053499 3300031903 Bacteria 2323
159 Ga0307412_10035388 3300031911 Bacteria 3190
160 Ga0307412_10130239 3300031911 Bacteria 1826
161 Ga0307409_100058259 3300031995 Bacteria 2999
162 Ga0307416_100131304 3300032002 Bacteria 2255
163 Ga0307416_100212781 3300032002 Bacteria 1846
164 Ga0307414_10378434 3300032004 Bacteria 1223
165 Ga0307411_10035822 3300032005 Bacteria 3103
166 Ga0307510_10126575 3300033180 Bacteria 2242
167 Ga0373931_0028379 3300035691 Bacteria 2865
168 Ga0373925_0009554 3300037068 Bacteria 7064
169 Ga0373925_0035642 3300037068 Bacteria 3672
170 Ga0373925_0187770 3300037068 Bacteria 1639
171 Ga0451853_2812395 3300041512 Bacteria 1730
172 Ga0439431_0007543 3300041997 Bacteria 2428
173 Ga0466969_0018496 3300044656 Bacteria 3628
174 Ga0466972_0007552 3300044658 Bacteria 5457
175 Ga0466966_0014563 3300044684 Bacteria 5205
176 Ga0466963_0024187 3300044694 Bacteria 3866
177 Ga0453684_0222536 3300044712 Bacteria 2185
178 Ga0466971_0038911 3300044719 Bacteria 2134
179 Ga0466970_0014682 3300044765 Bacteria 4023
180 Ga0466957_0090977 3300044842 Bacteria 1911
181 Ga0495590_0022574 3300046457 Bacteria 2226
182 Ga0495606_0021879 3300046507 Bacteria 4676
183 Ga0495632_0021184 3300046519 Bacteria 3506
184 Ga0495621_0000594 3300046539 Bacteria 9032
185 Ga0495597_0007752 3300046542 Bacteria 5425
186 Ga0495597_0079903 3300046542 Bacteria 1400
187 Ga0495611_0095800 3300046648 Bacteria 1374
188 Ga0495625_0034995 3300046660 Bacteria 3704
189 Ga0495649_0000490 3300046694 Bacteria 33953
190 Ga0495687_000502 3300047443 Bacteria 47227
191 Ga0495687_028930 3300047443 Bacteria 2570
192 Ga0496108_0319272 3300048911 Bacteria 1354
193 Ga0496124_0000786 3300048927 Bacteria 51804
194 Ga0496125_0047548 3300048928 Bacteria 3586
195 Ga0501198_000008 3300049649 Bacteria 129023
196 Ga0501222_000006 3300049662 Bacteria 129030
197 nmdc:mga03n38_102457_c1 3300050490 Bacteria 1382
198 nmdc:mga0k408_1070_c2 3300050493 Bacteria 9350
199 nmdc:mga0k408_136383_c1 3300050493 Bacteria 1458
200 nmdc:mga0k408_16582_c1 3300050493 Bacteria 4090
201 nmdc:mga0k408_2053_c1 3300050493 Bacteria 10766
202 nmdc:mga0k408_2415_c1 3300050493 Bacteria 9936
203 nmdc:mga0k408_27434_c1 3300050493 Bacteria 3234
204 nmdc:mga0k408_330_c1 3300050493 Bacteria 25941
205 nmdc:mga0k408_36358_c1 3300050493 Bacteria 2826
206 nmdc:mga0k408_50558_c1 3300050493 Bacteria 2407
207 nmdc:mga0k408_513_c1 3300050493 Bacteria 21294
208 nmdc:mga0k408_55781_c1 3300050493 Bacteria 2291
209 nmdc:mga0k408_67918_c1 3300050493 Bacteria 2078
210 nmdc:mga0k408_7296_c1 3300050493 Bacteria 5906
211 nmdc:mga06z11_110269_c1 3300050494 Bacteria 1523
212 nmdc:mga06z11_126697_c1 3300050494 Bacteria 1430
213 nmdc:mga07m45_14026_c1 3300050496 Bacteria 4262
214 nmdc:mga07m45_191_c1 3300050496 Bacteria 24330
215 nmdc:mga07m45_31781_c1 3300050496 Bacteria 2925
216 nmdc:mga07m45_3515_c1 3300050496 Bacteria 7561
217 nmdc:mga07m45_50389_c1 3300050496 Bacteria 2346
218 nmdc:mga05p37_12800_c1 3300050507 Bacteria 10028
219 nmdc:mga0qj67_38347_c1 3300050509 Bacteria 3759
220 Ga0500619_000062 3300053154 Bacteria 32808

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046457 Ga0495590_0022574 Ga0495590_0022574_15_779 253
2 3300050493 nmdc:mga0k408_136383_c1 nmdc:mga0k408_136383_c1_25_903 277
3 3300026116 Ga0207674_10109651 Ga0207674_101096514 280
4 3300005354 Ga0070675_100272253 Ga0070675_1002722531 288
5 3300013296 Ga0157374_10073928 Ga0157374_100739282 288
6 3300025926 Ga0207659_10262428 Ga0207659_102624281 288
7 3300006195 Ga0075366_10038345 Ga0075366_100383454 289
8 3300050493 nmdc:mga0k408_36358_c1 nmdc:mga0k408_36358_c1_905_1978 289
9 3300005467 Ga0070706_100050147 Ga0070706_1000501473 291
10 3300006353 Ga0075370_10048794 Ga0075370_100487943 291
11 3300006195 Ga0075366_10247403 Ga0075366_102474031 294
12 3300050493 nmdc:mga0k408_27434_c1 nmdc:mga0k408_27434_c1_1241_2179 295
13 3300046542 Ga0495597_0007752 Ga0495597_0007752_351_1289 296
14 3300047443 Ga0495687_000502 Ga0495687_000502_5168_6106 296
15 3300005328 Ga0070676_10005519 Ga0070676_100055197 297
16 3300006195 Ga0075366_10009193 Ga0075366_100091936 297
17 3300006353 Ga0075370_10021208 Ga0075370_100212084 297
18 3300028786 Ga0307517_10097516 Ga0307517_100975162 297
19 3300031456 Ga0307513_10064492 Ga0307513_100644925 297
20 3300050493 nmdc:mga0k408_513_c1 nmdc:mga0k408_513_c1_5645_6583 297
21 3300050496 nmdc:mga07m45_31781_c1 nmdc:mga07m45_31781_c1_1524_2462 297
22 3300005333 Ga0070677_10034887 Ga0070677_100348872 298
23 3300005459 Ga0068867_100005055 Ga0068867_1000050555 298
24 3300005543 Ga0070672_100238407 Ga0070672_1002384072 298
25 3300005718 Ga0068866_10008994 Ga0068866_100089944 298
26 3300005719 Ga0068861_100002083 Ga0068861_1000020835 298
27 3300005842 Ga0068858_100122186 Ga0068858_1001221862 298
28 3300005843 Ga0068860_100003217 Ga0068860_1000032178 298
29 3300005844 Ga0068862_100020847 Ga0068862_1000208474 298
30 3300006195 Ga0075366_10009187 Ga0075366_100091874 298
31 3300009553 Ga0105249_10079010 Ga0105249_100790103 298
32 3300013306 Ga0163162_10008791 Ga0163162_100087914 298
33 3300014326 Ga0157380_10023770 Ga0157380_100237704 298
34 3300025899 Ga0207642_10005647 Ga0207642_100056473 298
35 3300025938 Ga0207704_10016524 Ga0207704_100165242 298
36 3300025940 Ga0207691_10103830 Ga0207691_101038303 298
37 3300025961 Ga0207712_10047775 Ga0207712_100477753 298
38 3300026089 Ga0207648_10002165 Ga0207648_100021658 298
39 3300026118 Ga0207675_100004351 Ga0207675_10000435112 298
40 3300028380 Ga0268265_10008781 Ga0268265_100087813 298
41 3300028381 Ga0268264_10003397 Ga0268264_100033978 298
42 3300050493 nmdc:mga0k408_67918_c1 nmdc:mga0k408_67918_c1_766_1755 298
43 3300006042 Ga0075368_10046461 Ga0075368_100464612 299
44 3300006048 Ga0075363_100134733 Ga0075363_1001347332 299
45 3300009148 Ga0105243_10155711 Ga0105243_101557112 299
46 3300009174 Ga0105241_10099288 Ga0105241_100992882 299
47 3300037068 Ga0373925_0035642 Ga0373925_0035642_1906_2835 299
48 3300050490 nmdc:mga03n38_102457_c1 nmdc:mga03n38_102457_c1_291_1229 299
49 3300005328 Ga0070676_10060999 Ga0070676_100609992 300
50 3300006038 Ga0075365_10131279 Ga0075365_101312792 300
51 3300006051 Ga0075364_10125072 Ga0075364_101250722 300
52 3300006177 Ga0075362_10056962 Ga0075362_100569622 300
53 3300006178 Ga0075367_10107675 Ga0075367_101076752 300
54 3300010375 Ga0105239_10102223 Ga0105239_101022234 300
55 3300025935 Ga0207709_10091743 Ga0207709_100917432 300
56 3300026089 Ga0207648_10202526 Ga0207648_102025262 300
57 3300046507 Ga0495606_0021879 Ga0495606_0021879_99_1010 300
58 3300050493 nmdc:mga0k408_1070_c2 nmdc:mga0k408_1070_c2_6132_7070 300
59 3300050494 nmdc:mga06z11_110269_c1 nmdc:mga06z11_110269_c1_256_1194 300
60 3300050496 nmdc:mga07m45_3515_c1 nmdc:mga07m45_3515_c1_2053_2991 300
61 3300031730 Ga0307516_10006499 Ga0307516_100064995 301
62 iso_pu_bacteria 2881101125 2881103935 301
63 3300003323 rootH1_10051283 rootH1_100512831 305
64 3300009098 Ga0105245_10011416 Ga0105245_100114162 308
65 3300041997 Ga0439431_0007543 Ga0439431_0007543_407_1351 308
66 3300044658 Ga0466972_0007552 Ga0466972_0007552_788_1723 308
67 3300044656 Ga0466969_0018496 Ga0466969_0018496_363_1361 309
68 3300044684 Ga0466966_0014563 Ga0466966_0014563_1965_2963 309
69 3300044694 Ga0466963_0024187 Ga0466963_0024187_208_1206 309
70 3300044719 Ga0466971_0038911 Ga0466971_0038911_138_1136 309
71 3300044765 Ga0466970_0014682 Ga0466970_0014682_1670_2668 309
72 3300044842 Ga0466957_0090977 Ga0466957_0090977_578_1576 309
73 3300048927 Ga0496124_0000786 Ga0496124_0000786_22501_23433 309
74 3300048928 Ga0496125_0047548 Ga0496125_0047548_39_971 309
75 iso_pu_bacteria 2643221654 2644301970 309
76 3300005455 Ga0070663_100001001 Ga0070663_10000100110 310
77 3300026067 Ga0207678_10001091 Ga0207678_1000109120 310
78 3300002773 JGI25152J39213_1000689 JGI25152J39213_100068912 311
79 3300003215 JGI25153J46596_10002317 JGI25153J46596_100023175 311
80 3300003771 Ga0055526_1002637 Ga0055526_10026374 311
81 3300005328 Ga0070676_10002065 Ga0070676_100020653 311
82 3300005331 Ga0070670_100001786 Ga0070670_10000178614 311
83 3300005334 Ga0068869_100318314 Ga0068869_1003183142 311
84 3300005338 Ga0068868_100025535 Ga0068868_1000255354 311
85 3300005347 Ga0070668_100065155 Ga0070668_1000651551 311
86 3300005354 Ga0070675_100000908 Ga0070675_1000009082 311
87 3300005355 Ga0070671_100013507 Ga0070671_1000135071 311
88 3300005356 Ga0070674_100075841 Ga0070674_1000758413 311
89 3300005364 Ga0070673_100253961 Ga0070673_1002539611 311
90 3300005367 Ga0070667_100001640 Ga0070667_1000016405 311
91 3300005367 Ga0070667_100345098 Ga0070667_1003450981 311
92 3300005457 Ga0070662_100003301 Ga0070662_1000033014 311
93 3300005459 Ga0068867_100002785 Ga0068867_10000278513 311
94 3300005459 Ga0068867_100003245 Ga0068867_1000032456 311
95 3300005468 Ga0070707_100169976 Ga0070707_1001699762 311
96 3300005471 Ga0070698_100032901 Ga0070698_1000329012 311
97 3300005543 Ga0070672_100000447 Ga0070672_10000044714 311
98 3300005543 Ga0070672_100030738 Ga0070672_1000307382 311
99 3300005564 Ga0070664_100132662 Ga0070664_1001326623 311
100 3300005577 Ga0068857_100381778 Ga0068857_1003817782 311
101 3300005578 Ga0068854_100027620 Ga0068854_1000276203 311
102 3300005616 Ga0068852_100120030 Ga0068852_1001200303 311
103 3300005618 Ga0068864_100078008 Ga0068864_1000780083 311
104 3300005834 Ga0068851_10092353 Ga0068851_100923533 311
105 3300005840 Ga0068870_10128496 Ga0068870_101284962 311
106 3300005844 Ga0068862_100045918 Ga0068862_1000459183 311
107 3300006038 Ga0075365_10002815 Ga0075365_100028158 311
108 3300006042 Ga0075368_10003440 Ga0075368_100034403 311
109 3300006048 Ga0075363_100252753 Ga0075363_1002527531 311
110 3300006051 Ga0075364_10123896 Ga0075364_101238962 311
111 3300006177 Ga0075362_10009457 Ga0075362_100094574 311
112 3300006178 Ga0075367_10007127 Ga0075367_100071272 311
113 3300006178 Ga0075367_10036645 Ga0075367_100366452 311
114 3300006195 Ga0075366_10000472 Ga0075366_100004726 311
115 3300006195 Ga0075366_10001795 Ga0075366_100017958 311
116 3300006195 Ga0075366_10002871 Ga0075366_100028714 311
117 3300006195 Ga0075366_10033200 Ga0075366_100332004 311
118 3300006195 Ga0075366_10045674 Ga0075366_100456744 311
119 3300006195 Ga0075366_10144548 Ga0075366_101445482 311
120 3300006237 Ga0097621_100050724 Ga0097621_1000507243 311
121 3300006353 Ga0075370_10122223 Ga0075370_101222232 311
122 3300006846 Ga0075430_100038755 Ga0075430_1000387553 311
123 3300006880 Ga0075429_100002218 Ga0075429_1000022187 311
124 3300009147 Ga0114129_10014882 Ga0114129_100148825 311
125 3300009148 Ga0105243_10066459 Ga0105243_100664593 311
126 3300009545 Ga0105237_10123837 Ga0105237_101238373 311
127 3300009553 Ga0105249_10101085 Ga0105249_101010852 311
128 3300017792 Ga0163161_10092744 Ga0163161_100927443 311
129 3300025245 Ga0207425_1000315 Ga0207425_10003157 311
130 3300025258 Ga0209129_1000644 Ga0209129_10006447 311
131 3300025295 Ga0209564_1000029 Ga0209564_1000029420 311
132 3300025297 Ga0209758_1000043 Ga0209758_100004320 311
133 3300025321 Ga0207656_10020776 Ga0207656_100207761 311
134 3300025893 Ga0207682_10067788 Ga0207682_100677882 311
135 3300025903 Ga0207680_10163199 Ga0207680_101631992 311
136 3300025907 Ga0207645_10002710 Ga0207645_1000271014 311
137 3300025908 Ga0207643_10129904 Ga0207643_101299042 311
138 3300025910 Ga0207684_10009174 Ga0207684_100091744 311
139 3300025922 Ga0207646_10354261 Ga0207646_103542611 311
140 3300025923 Ga0207681_10081814 Ga0207681_100818143 311
141 3300025925 Ga0207650_10000783 Ga0207650_1000078313 311
142 3300025926 Ga0207659_10000307 Ga0207659_1000030724 311
143 3300025931 Ga0207644_10019772 Ga0207644_100197723 311
144 3300025933 Ga0207706_10012708 Ga0207706_100127084 311
145 3300025937 Ga0207669_10037550 Ga0207669_100375501 311
146 3300025940 Ga0207691_10003997 Ga0207691_1000399713 311
147 3300025940 Ga0207691_10317676 Ga0207691_103176761 311
148 3300025945 Ga0207679_10099928 Ga0207679_100999283 311
149 3300025960 Ga0207651_10043196 Ga0207651_100431962 311
150 3300025961 Ga0207712_10281236 Ga0207712_102812361 311
151 3300025972 Ga0207668_10028263 Ga0207668_100282632 311
152 3300025981 Ga0207640_10074218 Ga0207640_100742181 311
153 3300025986 Ga0207658_10001138 Ga0207658_100011386 311
154 3300025986 Ga0207658_10368677 Ga0207658_103686771 311
155 3300026023 Ga0207677_10337775 Ga0207677_103377751 311
156 3300026089 Ga0207648_10008882 Ga0207648_100088824 311
157 3300026089 Ga0207648_10016219 Ga0207648_100162192 311
158 3300026089 Ga0207648_10049613 Ga0207648_100496134 311
159 3300026095 Ga0207676_10068440 Ga0207676_100684403 311
160 3300026121 Ga0207683_10001684 Ga0207683_1000168412 311
161 3300026142 Ga0207698_10214964 Ga0207698_102149642 311
162 3300026142 Ga0207698_10274500 Ga0207698_102745001 311
163 3300027717 Ga0209998_10002769 Ga0209998_100027692 311
164 3300027866 Ga0209813_10009308 Ga0209813_100093084 311
165 3300028380 Ga0268265_10099805 Ga0268265_100998052 311
166 3300028786 Ga0307517_10000150 Ga0307517_1000015070 311
167 3300028794 Ga0307515_10003609 Ga0307515_1000360921 311
168 3300028794 Ga0307515_10057158 Ga0307515_100571582 311
169 3300028794 Ga0307515_10138264 Ga0307515_101382642 311
170 3300028794 Ga0307515_10340224 Ga0307515_103402242 311
171 3300031456 Ga0307513_10069180 Ga0307513_100691803 311
172 3300031456 Ga0307513_10080893 Ga0307513_100808932 311
173 3300031507 Ga0307509_10011064 Ga0307509_100110643 311
174 3300031507 Ga0307509_10017922 Ga0307509_100179229 311
175 3300031507 Ga0307509_10070643 Ga0307509_100706432 311
176 3300031616 Ga0307508_10001937 Ga0307508_1000193717 311
177 3300031616 Ga0307508_10002030 Ga0307508_100020306 311
178 3300031649 Ga0307514_10037093 Ga0307514_100370934 311
179 3300031730 Ga0307516_10222196 Ga0307516_102221962 311
180 3300031730 Ga0307516_10333480 Ga0307516_103334802 311
181 3300031731 Ga0307405_10015716 Ga0307405_100157164 311
182 3300031824 Ga0307413_10020602 Ga0307413_100206022 311
183 3300031852 Ga0307410_10092073 Ga0307410_100920733 311
184 3300031901 Ga0307406_10003869 Ga0307406_100038698 311
185 3300031903 Ga0307407_10053499 Ga0307407_100534993 311
186 3300031911 Ga0307412_10035388 Ga0307412_100353882 311
187 3300031911 Ga0307412_10130239 Ga0307412_101302392 311
188 3300031995 Ga0307409_100058259 Ga0307409_1000582592 311
189 3300032002 Ga0307416_100131304 Ga0307416_1001313043 311
190 3300032002 Ga0307416_100212781 Ga0307416_1002127812 311
191 3300032004 Ga0307414_10378434 Ga0307414_103784342 311
192 3300032005 Ga0307411_10035822 Ga0307411_100358223 311
193 3300033180 Ga0307510_10126575 Ga0307510_101265752 311
194 3300035691 Ga0373931_0028379 Ga0373931_0028379_1576_2511 311
195 3300037068 Ga0373925_0009554 Ga0373925_0009554_263_1243 311
196 3300037068 Ga0373925_0187770 Ga0373925_0187770_636_1577 311
197 3300041512 Ga0451853_2812395 Ga0451853_2812395_179_1114 311
198 3300044712 Ga0453684_0222536 Ga0453684_0222536_537_1481 311
199 3300046519 Ga0495632_0021184 Ga0495632_0021184_348_1286 311
200 3300046539 Ga0495621_0000594 Ga0495621_0000594_1808_2761 311
201 3300046542 Ga0495597_0079903 Ga0495597_0079903_183_1121 311
202 3300046648 Ga0495611_0095800 Ga0495611_0095800_234_1172 311
203 3300046660 Ga0495625_0034995 Ga0495625_0034995_2288_3238 311
204 3300046694 Ga0495649_0000490 Ga0495649_0000490_32018_32956 311
205 3300047443 Ga0495687_028930 Ga0495687_028930_989_1927 311
206 3300048911 Ga0496108_0319272 Ga0496108_0319272_174_1121 311
207 3300049649 Ga0501198_000008 Ga0501198_000008_29343_30305 311
208 3300049662 Ga0501222_000006 Ga0501222_000006_98739_99701 311
209 3300050493 nmdc:mga0k408_16582_c1 nmdc:mga0k408_16582_c1_3022_3993 311
210 3300050493 nmdc:mga0k408_2053_c1 nmdc:mga0k408_2053_c1_3276_4214 311
211 3300050493 nmdc:mga0k408_2415_c1 nmdc:mga0k408_2415_c1_8667_9605 311
212 3300050493 nmdc:mga0k408_330_c1 nmdc:mga0k408_330_c1_12624_13598 311
213 3300050493 nmdc:mga0k408_50558_c1 nmdc:mga0k408_50558_c1_514_1524 311
214 3300050493 nmdc:mga0k408_55781_c1 nmdc:mga0k408_55781_c1_1294_2268 311
215 3300050493 nmdc:mga0k408_7296_c1 nmdc:mga0k408_7296_c1_1509_2471 311
216 3300050494 nmdc:mga06z11_126697_c1 nmdc:mga06z11_126697_c1_240_1178 311
217 3300050496 nmdc:mga07m45_14026_c1 nmdc:mga07m45_14026_c1_133_1071 311
218 3300050496 nmdc:mga07m45_191_c1 nmdc:mga07m45_191_c1_20849_21787 311
219 3300050496 nmdc:mga07m45_50389_c1 nmdc:mga07m45_50389_c1_448_1413 311
220 3300050507 nmdc:mga05p37_12800_c1 nmdc:mga05p37_12800_c1_2063_3022 311
221 3300050509 nmdc:mga0qj67_38347_c1 nmdc:mga0qj67_38347_c1_1916_2854 311
222 3300053154 Ga0500619_000062 Ga0500619_000062_9311_10273 311

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00850

Hist_deacetyl

Histone deacetylase domain

60

339

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
5edu-assembly1.cif.gz_B crystal structure of human histone deacetylase 6 catalytic domain 2 in complex with trichostatin a 0.7868 2 301
8d98-assembly2.cif.gz_B crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 complexed with fluorinated inhibitor 5 0.7851 2 300
5edu-assembly2.cif.gz_A crystal structure of human histone deacetylase 6 catalytic domain 2 in complex with trichostatin a 0.7819 2 300
5g17-assembly1.cif.gz_B bordetella alcaligenes hdah (t101a) bound to 9,9,9-trifluoro-8,8- dihydroxy-n-phenylnonanamide. 0.781 22 301
7q1b-assembly1.cif.gz_A crystal structure of trypanosoma cruzi histone deacetylase dac2 complexed with quisinostat 0.7807 2 307
ID Description Score Start End Superfamily
af_X1WCM6_55_351_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.9056 5 304 3.40.800.20
af_X1WCM6_55_351_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.8969 5 304 3.40.800.20
af_Q18477_16_331_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.8217 2 302 3.40.800.20
af_Q4E011_94_496_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.8055 2 298 3.40.800.20
af_Q18477_16_331_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.7948 2 302 3.40.800.20
ID Description Score Start End GO Terms
AF-A0A7S1H6K9-F1-model_v4 Histone deacetylase domain-containing protein 0.9585 162 307 GO:0004407
GO:0040029
AF-X0W068-F1-model_v4 Histone deacetylase domain-containing protein 0.9536 158 301 GO:0004407
GO:0040029
AF-A0A534N7F6-F1-model_v4 Histone deacetylase 0.9517 196 301 GO:0004407
GO:0040029
AF-A0A3S2TJ97-F1-model_v4 Histone deacetylase 0.9461 22 307 GO:0004407
GO:0040029
AF-A0A831U420-F1-model_v4 Histone deacetylase 0.9419 148 301 GO:0004407
GO:0040029

Feature Viewer

pLDDT pTM Quality
86.27 0.9 High
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Predicted Structure (AlphaFold2)

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