F331252

General Info

Members Datasets Scaffolds Average Seq Length
219 129 219 338

Family's Representative Sequence

Representative Sequence 3300031852|Ga0307410_10032097|Ga0307410_100320975
Length 409
Sequence MRAKAPFDAPGQGSRRARAMLPAGALLAEAAAMEDRTRIPLQSLLDNVETDAAEAARIRPVRWKPMPTRARGRGAPHAGAARHVQIEPVGQCNLRCAMCPIELRPESEPGRPPAHMPPAVFRRLVDAFGAIDELHLQGLGEPLLHPQFFELVAYAARRGIKVSTNTNMTLMTEARAAACVASGLHDLHVSLDAATAATFEAIRRRASFRKVLRNLRRLMAARAVSSSALPHVHLVAVAMRRNLDQLPALVRLAHAEGAESLSVQHLCHDFAESALPERYRPMRAFVEAETLLGEERAKVEAAFGAARAEAGRLGVPLRLPSIGVPRHADDAPRRTRCDSPWRSAYVSHDGQAMPCCMVATPDRASFGNMAEEGVAAVWGNDAYRSFRDALESAEPPDVCRGCAVYRGTF

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
4 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
7 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
8 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
9 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
10 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
11 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
13 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
14 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
15 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
16 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
25 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
26 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
27 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
28 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
29 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
30 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
31 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
32 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
33 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
34 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
35 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
36 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
37 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
38 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
39 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
40 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
41 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
42 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
43 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
44 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
45 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
46 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
47 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
48 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
49 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
50 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
51 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
52 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
53 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
54 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
55 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
56 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
57 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
58 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
59 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
60 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
61 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
62 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
63 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
64 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
65 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
66 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
67 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
68 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
71 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
72 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
73 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
74 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
75 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
76 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
77 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
78 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
79 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
80 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
81 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
82 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
83 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
84 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
85 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
86 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
87 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
88 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
89 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
90 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
91 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
92 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
93 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
94 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
95 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
96 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
97 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
98 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
99 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
100 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
109 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
110 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
111 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
114 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
115 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
116 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
118 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300059506 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
121 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
123 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
124 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300059652 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 72R_SD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.15
Metatranscriptomes 6.85
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.37
Rhizosphere 98.63
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100072196 3300005334 Unclassified 2557
2 Ga0070714_100402578 3300005435 Bacteria 1294
3 Ga0070681_10240115 3300005458 Bacteria 1725
4 Ga0068853_100069506 3300005539 Bacteria 3064
5 Ga0068855_100219362 3300005563 Unclassified 2133
6 Ga0068854_100127218 3300005578 Unclassified 1942
7 Ga0068856_100311681 3300005614 Bacteria 1591
8 Ga0070717_10049044 3300006028 Bacteria 3466
9 Ga0075430_100175435 3300006846 Bacteria 1783
10 Ga0105240_10049952 3300009093 Bacteria 5276
11 Ga0111539_10556279 3300009094 Bacteria 1336
12 Ga0105237_10039494 3300009545 Bacteria 4765
13 Ga0157370_10128116 3300013104 Bacteria 2368
14 Ga0157369_10284594 3300013105 Unclassified 1721
15 Ga0224712_10095117 3300022467 Bacteria 1254
16 Ga0207695_10021655 3300025913 Bacteria 7328
17 Ga0207695_10040276 3300025913 Bacteria 5013
18 Ga0207660_10101910 3300025917 Bacteria 2145
19 Ga0207652_10277588 3300025921 Unclassified 1512
20 Ga0207700_10061723 3300025928 Bacteria 2844
21 Ga0207689_10087977 3300025942 Unclassified 2552
22 Ga0207702_10251503 3300026078 Bacteria 1660
23 Ga0207698_10053642 3300026142 Bacteria 3096
24 Ga0268264_10212724 3300028381 Bacteria 1776
25 Ga0307408_100222107 3300031548 Bacteria 1542
26 Ga0307413_10205516 3300031824 Bacteria 1426
27 Ga0307410_10032097 3300031852 Bacteria 3376
28 Ga0307416_100310205 3300032002 Bacteria 1574
29 Ga0395899_0000541 3300037312 Bacteria 41170
30 Ga0395899_0000964 3300037312 Bacteria 26679
31 Ga0395900_0041237 3300037418 Bacteria 4759
32 Ga0395905_0006946 3300037471 Bacteria 11313
33 Ga0395905_0048188 3300037471 Bacteria 3994
34 Ga0395905_0050064 3300037471 Bacteria 3915
35 Ga0395905_0076385 3300037471 Bacteria 3139
36 Ga0395905_0358788 3300037471 Unclassified 1350
37 Ga0395901_0004064 3300038443 Bacteria 14737
38 Ga0395901_0304397 3300038443 Bacteria 1652
39 Ga0451577_0010276 3300042876 Bacteria 8959
40 Ga0451577_0013388 3300042876 Bacteria 7678
41 Ga0451577_0203690 3300042876 Bacteria 1786
42 Ga0451577_0467838 3300042876 Bacteria 1145
43 Ga0466969_0013896 3300044656 Bacteria 4237
44 Ga0466972_0000034 3300044658 Bacteria 152086
45 Ga0466972_0053452 3300044658 Bacteria 1945
46 Ga0466972_0093138 3300044658 Bacteria 1428
47 Ga0466965_0026212 3300044683 Bacteria 2825
48 Ga0466965_0065082 3300044683 Bacteria 1826
49 Ga0466964_0024665 3300044706 Bacteria 2344
50 Ga0453684_0000348 3300044712 Bacteria 192530
51 Ga0466971_0031450 3300044719 Bacteria 2376
52 Ga0466968_0005796 3300044735 Bacteria 4633
53 Ga0466970_0002504 3300044765 Bacteria 8856
54 Ga0466957_0043911 3300044842 Bacteria 2708
55 Ga0466957_0078671 3300044842 Bacteria 2051
56 Ga0466959_0002765 3300045049 Bacteria 11296
57 Ga0466959_0116407 3300045049 Bacteria 1903
58 Ga0451576_0003196 3300045051 Bacteria 22856
59 Ga0451576_0009412 3300045051 Bacteria 11328
60 Ga0451576_0363416 3300045051 Bacteria 1516
61 Ga0466967_0036700 3300045976 Bacteria 4187
62 Ga0466967_0131476 3300045976 Bacteria 2324
63 Ga0466967_0212142 3300045976 Bacteria 1837
64 Ga0495617_005100 3300046452 Bacteria 4694
65 Ga0495627_012421 3300046453 Bacteria 3022
66 Ga0495603_0013708 3300046455 Bacteria 4905
67 Ga0495603_0054183 3300046455 Bacteria 2378
68 Ga0495590_0015093 3300046457 Bacteria 2811
69 Ga0495629_0004616 3300046459 Bacteria 10313
70 Ga0495629_0169254 3300046459 Bacteria 1517
71 Ga0495638_0014641 3300046460 Bacteria 5291
72 Ga0495582_0016005 3300046473 Bacteria 4112
73 Ga0495605_0098481 3300046474 Bacteria 1347
74 Ga0495584_0000078 3300046491 Bacteria 68161
75 Ga0495584_0006180 3300046491 Bacteria 6294
76 Ga0495584_0006338 3300046491 Bacteria 6200
77 Ga0495584_0012720 3300046491 Bacteria 4295
78 Ga0495584_0018495 3300046491 Bacteria 3542
79 Ga0495584_0023797 3300046491 Bacteria 3104
80 Ga0495584_0100686 3300046491 Bacteria 1460
81 Ga0495585_0000033 3300046492 Bacteria 143282
82 Ga0495585_0000042 3300046492 Bacteria 125286
83 Ga0495585_0001090 3300046492 Bacteria 22357
84 Ga0495585_0001616 3300046492 Bacteria 17346
85 Ga0495585_0006517 3300046492 Bacteria 7230
86 Ga0495585_0021619 3300046492 Bacteria 3694
87 Ga0495585_0037369 3300046492 Bacteria 2735
88 Ga0495585_0056560 3300046492 Bacteria 2166
89 Ga0495594_0050070 3300046499 Bacteria 2297
90 Ga0495596_0000223 3300046500 Bacteria 38726
91 Ga0495596_0004254 3300046500 Bacteria 7019
92 Ga0495583_0000263 3300046506 Bacteria 86125
93 Ga0495583_0038085 3300046506 Bacteria 2274
94 Ga0495606_0008350 3300046507 Bacteria 9017
95 Ga0495606_0016428 3300046507 Bacteria 5642
96 Ga0495606_0022086 3300046507 Bacteria 4648
97 Ga0495606_0057763 3300046507 Bacteria 2497
98 Ga0495606_0063582 3300046507 Bacteria 2352
99 Ga0495606_0085763 3300046507 Bacteria 1947
100 Ga0495616_0002288 3300046513 Bacteria 12814
101 Ga0495616_0021475 3300046513 Bacteria 3496
102 Ga0495616_0035477 3300046513 Bacteria 2580
103 Ga0495620_0033613 3300046515 Bacteria 2326
104 Ga0495631_0006516 3300046518 Bacteria 6022
105 Ga0495631_0017997 3300046518 Bacteria 3333
106 Ga0495631_0123282 3300046518 Bacteria 1114
107 Ga0495632_0021960 3300046519 Bacteria 3429
108 Ga0495643_0001092 3300046522 Bacteria 26990
109 Ga0495643_0046238 3300046522 Bacteria 2360
110 Ga0495643_0079046 3300046522 Bacteria 1715
111 Ga0495644_0026585 3300046523 Bacteria 2195
112 Ga0495644_0049919 3300046523 Bacteria 1570
113 Ga0495644_0074718 3300046523 Bacteria 1275
114 Ga0495648_0000052 3300046524 Bacteria 162169
115 Ga0495663_0045117 3300046525 Bacteria 1351
116 Ga0495666_0005810 3300046526 Bacteria 6221
117 Ga0495642_0001742 3300046528 Bacteria 9376
118 Ga0495642_0002465 3300046528 Bacteria 7524
119 Ga0495642_0008812 3300046528 Bacteria 3857
120 Ga0495642_0010747 3300046528 Bacteria 3506
121 Ga0495642_0095684 3300046528 Bacteria 1260
122 Ga0495586_0005300 3300046535 Bacteria 6902
123 Ga0495587_0090702 3300046536 Bacteria 1765
124 Ga0495597_0001114 3300046542 Bacteria 20325
125 Ga0495597_0002803 3300046542 Bacteria 10711
126 Ga0495597_0004981 3300046542 Bacteria 7130
127 Ga0495597_0011204 3300046542 Bacteria 4350
128 Ga0495597_0074498 3300046542 Bacteria 1457
129 Ga0495597_0148363 3300046542 Bacteria 963
130 Ga0495622_0011886 3300046557 Bacteria 4025
131 Ga0495622_0072291 3300046557 Bacteria 1591
132 Ga0495633_0002312 3300046558 Bacteria 13589
133 Ga0495633_0007941 3300046558 Bacteria 6048
134 Ga0495633_0022448 3300046558 Bacteria 3140
135 Ga0495633_0029695 3300046558 Bacteria 2659
136 Ga0495633_0090977 3300046558 Bacteria 1418
137 Ga0495668_0001653 3300046616 Bacteria 20784
138 Ga0495668_0033558 3300046616 Bacteria 2883
139 Ga0495634_0051844 3300046642 Bacteria 2753
140 Ga0495611_0043730 3300046648 Bacteria 2003
141 Ga0495625_0005884 3300046660 Bacteria 11043
142 Ga0495625_0113518 3300046660 Bacteria 1850
143 Ga0495661_0007205 3300046665 Bacteria 7757
144 Ga0495661_0012239 3300046665 Bacteria 5795
145 Ga0495661_0018885 3300046665 Bacteria 4526
146 Ga0495661_0032504 3300046665 Bacteria 3297
147 Ga0495661_0109532 3300046665 Bacteria 1541
148 Ga0495588_0041671 3300046674 Bacteria 2345
149 Ga0495588_0111854 3300046674 Bacteria 1438
150 Ga0495623_0048185 3300046679 Bacteria 2703
151 Ga0495669_0007413 3300046684 Bacteria 4600
152 Ga0495613_0047496 3300046689 Bacteria 3171
153 Ga0495670_0001461 3300046691 Bacteria 11546
154 Ga0495670_0001957 3300046691 Bacteria 10130
155 Ga0495671_0015377 3300046692 Bacteria 4101
156 Ga0495671_0019440 3300046692 Bacteria 3591
157 Ga0495671_0021184 3300046692 Bacteria 3418
158 Ga0495589_0010393 3300046794 Bacteria 4836
159 Ga0495600_0031145 3300046809 Bacteria 3454
160 Ga0495660_0057076 3300046810 Bacteria 2107
161 Ga0495581_0104786 3300047315 Bacteria 1643
162 Ga0495604_0163558 3300047317 Bacteria 1570
163 Ga0495674_0123607 3300047319 Bacteria 2185
164 Ga0495676_0013901 3300047321 Bacteria 7217
165 Ga0495676_0033513 3300047321 Bacteria 4324
166 Ga0495683_0000391 3300047323 Bacteria 35488
167 Ga0495683_0001276 3300047323 Bacteria 17064
168 Ga0495683_0098857 3300047323 Bacteria 1405
169 Ga0495687_000849 3300047443 Bacteria 32586
170 Ga0495677_0001729 3300047445 Bacteria 8749
171 Ga0495677_0017569 3300047445 Bacteria 2593
172 Ga0495685_014074 3300047447 Bacteria 2715
173 Ga0495681_0024687 3300047470 Bacteria 3158
174 Ga0495681_0027432 3300047470 Bacteria 2945
175 Ga0495681_0065822 3300047470 Bacteria 1655
176 Ga0495593_0023743 3300047673 Bacteria 3404
177 Ga0495593_0155523 3300047673 Bacteria 1155
178 Ga0495602_0076195 3300048088 Bacteria 2843
179 Ga0495614_0060228 3300048089 Bacteria 1631
180 Ga0495626_0007707 3300048091 Bacteria 5965
181 Ga0495626_0044380 3300048091 Bacteria 2080
182 Ga0495626_0052049 3300048091 Bacteria 1887
183 Ga0495626_0097627 3300048091 Bacteria 1284
184 Ga0496102_0031083 3300048905 Bacteria 4786
185 Ga0496115_0001806 3300048918 Bacteria 15295
186 Ga0496115_0073774 3300048918 Bacteria 2770
187 Ga0495682_0017632 3300049460 Bacteria 2692
188 Ga0495682_0054902 3300049460 Bacteria 1445
189 Ga0501034_0142557 3300049571 Bacteria 2375
190 Ga0501036_0179651 3300049572 Unclassified 1782
191 Ga0501037_0015729 3300049573 Bacteria 5567
192 Ga0501038_0045323 3300049574 Unclassified 3818
193 Ga0501072_0041528 3300049588 Bacteria 3613
194 Ga0501075_0020668 3300049591 Bacteria 4790
195 Ga0501076_0087208 3300049592 Bacteria 2509
196 Ga0501079_0212595 3300049741 Bacteria 1511
197 Ga0501044_0023030 3300049823 Bacteria 6629
198 Ga0501044_0064526 3300049823 Bacteria 3738
199 Ga0501044_0277891 3300049823 Bacteria 1609
200 Ga0501044_0295385 3300049823 Unclassified 1551
201 Ga0501045_0067756 3300049824 Bacteria 2622
202 nmdc:mga0qj67_233876_c1 3300050509 Bacteria 1491
203 nmdc:mga0n895_369772_c1 3300050512 Bacteria 1451
204 Ga0587084_000997 3300059477 Bacteria 2529
205 Ga0587070_004241 3300059491 Bacteria 1795
206 Ga0587077_004239 3300059493 Bacteria 1870
207 Ga0587085_000544 3300059506 Bacteria 2897
208 Ga0587090_002538 3300059510 Bacteria 2022
209 Ga0587092_006678 3300059512 Bacteria 1467
210 Ga0587062_000392 3300059639 Bacteria 2984
211 Ga0587067_007354 3300059640 Bacteria 1570
212 Ga0587068_006132 3300059641 Bacteria 1670
213 Ga0587072_000255 3300059643 Bacteria 4918
214 Ga0587076_001591 3300059645 Bacteria 2343
215 Ga0587107_004520 3300059652 Bacteria 1419
216 Ga0587111_0000133 3300060346 Bacteria 5201
217 Ga0587111_0000278 3300060346 Bacteria 4351
218 Ga0466962_0009827 3300061719 Bacteria 4591
219 Ga0466962_0078115 3300061719 Bacteria 1582

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300006846 Ga0075430_100175435 Ga0075430_1001754352 287
2 3300046542 Ga0495597_0148363 Ga0495597_0148363_18_950 299
3 3300050509 nmdc:mga0qj67_233876_c1 nmdc:mga0qj67_233876_c1_177_1175 314
4 3300044656 Ga0466969_0013896 Ga0466969_0013896_1069_2064 324
5 3300044683 Ga0466965_0065082 Ga0466965_0065082_291_1286 324
6 3300044719 Ga0466971_0031450 Ga0466971_0031450_990_1985 324
7 3300045049 Ga0466959_0116407 Ga0466959_0116407_412_1407 324
8 3300045976 Ga0466967_0212142 Ga0466967_0212142_539_1534 324
9 3300061719 Ga0466962_0009827 Ga0466962_0009827_2640_3635 324
10 3300037471 Ga0395905_0076385 Ga0395905_0076385_326_1315 325
11 3300044658 Ga0466972_0093138 Ga0466972_0093138_76_1077 325
12 3300046507 Ga0495606_0008350 Ga0495606_0008350_4872_5885 325
13 3300046518 Ga0495631_0123282 Ga0495631_0123282_89_1102 325
14 3300046474 Ga0495605_0098481 Ga0495605_0098481_306_1319 326
15 3300046525 Ga0495663_0045117 Ga0495663_0045117_116_1129 326
16 3300046528 Ga0495642_0095684 Ga0495642_0095684_13_1026 326
17 3300046558 Ga0495633_0090977 Ga0495633_0090977_340_1353 326
18 3300046665 Ga0495661_0109532 Ga0495661_0109532_306_1319 326
19 3300046692 Ga0495671_0015377 Ga0495671_0015377_2612_3625 326
20 3300049572 Ga0501036_0179651 Ga0501036_0179651_334_1320 326
21 3300049588 Ga0501072_0041528 Ga0501072_0041528_1013_1999 326
22 3300049591 Ga0501075_0020668 Ga0501075_0020668_1919_2905 326
23 3300049592 Ga0501076_0087208 Ga0501076_0087208_265_1251 326
24 3300049741 Ga0501079_0212595 Ga0501079_0212595_504_1490 326
25 3300049824 Ga0501045_0067756 Ga0501045_0067756_1399_2385 326
26 3300009094 Ga0111539_10556279 Ga0111539_105562791 327
27 3300047445 Ga0495677_0001729 Ga0495677_0001729_5783_6778 329
28 3300005435 Ga0070714_100402578 Ga0070714_1004025781 330
29 3300005458 Ga0070681_10240115 Ga0070681_102401151 330
30 3300005539 Ga0068853_100069506 Ga0068853_1000695062 330
31 3300005563 Ga0068855_100219362 Ga0068855_1002193622 330
32 3300005578 Ga0068854_100127218 Ga0068854_1001272182 330
33 3300009093 Ga0105240_10049952 Ga0105240_100499523 330
34 3300009545 Ga0105237_10039494 Ga0105237_100394943 330
35 3300013104 Ga0157370_10128116 Ga0157370_101281162 330
36 3300013105 Ga0157369_10284594 Ga0157369_102845943 330
37 3300022467 Ga0224712_10095117 Ga0224712_100951171 330
38 3300025913 Ga0207695_10021655 Ga0207695_100216559 330
39 3300025913 Ga0207695_10040276 Ga0207695_100402765 330
40 3300025917 Ga0207660_10101910 Ga0207660_101019102 330
41 3300025921 Ga0207652_10277588 Ga0207652_102775882 330
42 3300026142 Ga0207698_10053642 Ga0207698_100536423 330
43 3300042876 Ga0451577_0010276 Ga0451577_0010276_2726_3742 330
44 3300044658 Ga0466972_0000034 Ga0466972_0000034_88381_89379 330
45 3300044683 Ga0466965_0026212 Ga0466965_0026212_131_1129 330
46 3300044706 Ga0466964_0024665 Ga0466964_0024665_276_1274 330
47 3300044735 Ga0466968_0005796 Ga0466968_0005796_2798_3796 330
48 3300044842 Ga0466957_0078671 Ga0466957_0078671_187_1185 330
49 3300045976 Ga0466967_0036700 Ga0466967_0036700_1440_2438 330
50 3300045976 Ga0466967_0131476 Ga0466967_0131476_1075_2073 330
51 3300049573 Ga0501037_0015729 Ga0501037_0015729_2036_3040 330
52 3300049574 Ga0501038_0045323 Ga0501038_0045323_145_1149 330
53 3300049823 Ga0501044_0023030 Ga0501044_0023030_2146_3150 330
54 3300049823 Ga0501044_0295385 Ga0501044_0295385_134_1132 330
55 3300031548 Ga0307408_100222107 Ga0307408_1002221071 331
56 3300037312 Ga0395899_0000541 Ga0395899_0000541_4805_5806 331
57 3300038443 Ga0395901_0004064 Ga0395901_0004064_6196_7197 331
58 3300046660 Ga0495625_0005884 Ga0495625_0005884_9112_10137 331
59 3300049823 Ga0501044_0277891 Ga0501044_0277891_436_1437 331
60 3300037312 Ga0395899_0000964 Ga0395899_0000964_1083_2102 332
61 3300037418 Ga0395900_0041237 Ga0395900_0041237_1670_2689 332
62 3300037471 Ga0395905_0006946 Ga0395905_0006946_5223_6242 332
63 3300037471 Ga0395905_0048188 Ga0395905_0048188_2033_3052 332
64 3300038443 Ga0395901_0304397 Ga0395901_0304397_101_1120 332
65 3300042876 Ga0451577_0467838 Ga0451577_0467838_48_1052 332
66 3300044765 Ga0466970_0002504 Ga0466970_0002504_6994_7998 332
67 3300045049 Ga0466959_0002765 Ga0466959_0002765_278_1282 332
68 3300045051 Ga0451576_0363416 Ga0451576_0363416_209_1261 332
69 3300048091 Ga0495626_0044380 Ga0495626_0044380_154_1203 332
70 3300049571 Ga0501034_0142557 Ga0501034_0142557_1156_2175 332
71 3300050512 nmdc:mga0n895_369772_c1 nmdc:mga0n895_369772_c1_366_1370 332
72 3300060346 Ga0587111_0000278 Ga0587111_0000278_901_1920 332
73 3300046452 Ga0495617_005100 Ga0495617_005100_2735_3742 333
74 3300046453 Ga0495627_012421 Ga0495627_012421_1483_2490 333
75 3300046457 Ga0495590_0015093 Ga0495590_0015093_1722_2729 333
76 3300046491 Ga0495584_0000078 Ga0495584_0000078_29268_30275 333
77 3300046491 Ga0495584_0006180 Ga0495584_0006180_5044_6051 333
78 3300046491 Ga0495584_0012720 Ga0495584_0012720_2968_3975 333
79 3300046491 Ga0495584_0100686 Ga0495584_0100686_321_1328 333
80 3300046492 Ga0495585_0000033 Ga0495585_0000033_61384_62391 333
81 3300046492 Ga0495585_0000042 Ga0495585_0000042_51884_52891 333
82 3300046492 Ga0495585_0001090 Ga0495585_0001090_12341_13348 333
83 3300046492 Ga0495585_0001616 Ga0495585_0001616_9363_10370 333
84 3300046492 Ga0495585_0006517 Ga0495585_0006517_3737_4744 333
85 3300046492 Ga0495585_0021619 Ga0495585_0021619_1713_2720 333
86 3300046492 Ga0495585_0037369 Ga0495585_0037369_321_1328 333
87 3300046492 Ga0495585_0056560 Ga0495585_0056560_1084_2097 333
88 3300046500 Ga0495596_0000223 Ga0495596_0000223_21777_22784 333
89 3300046500 Ga0495596_0004254 Ga0495596_0004254_4851_5858 333
90 3300046506 Ga0495583_0000263 Ga0495583_0000263_17950_18957 333
91 3300046506 Ga0495583_0038085 Ga0495583_0038085_1066_2103 333
92 3300046507 Ga0495606_0022086 Ga0495606_0022086_1509_2516 333
93 3300046507 Ga0495606_0057763 Ga0495606_0057763_1194_2207 333
94 3300046507 Ga0495606_0063582 Ga0495606_0063582_1038_2051 333
95 3300046507 Ga0495606_0085763 Ga0495606_0085763_400_1407 333
96 3300046513 Ga0495616_0002288 Ga0495616_0002288_996_2003 333
97 3300046513 Ga0495616_0021475 Ga0495616_0021475_2342_3349 333
98 3300046513 Ga0495616_0035477 Ga0495616_0035477_292_1329 333
99 3300046515 Ga0495620_0033613 Ga0495620_0033613_966_1973 333
100 3300046518 Ga0495631_0006516 Ga0495631_0006516_3915_4928 333
101 3300046519 Ga0495632_0021960 Ga0495632_0021960_2197_3234 333
102 3300046522 Ga0495643_0046238 Ga0495643_0046238_331_1353 333
103 3300046522 Ga0495643_0079046 Ga0495643_0079046_364_1401 333
104 3300046523 Ga0495644_0026585 Ga0495644_0026585_765_1772 333
105 3300046523 Ga0495644_0049919 Ga0495644_0049919_126_1133 333
106 3300046523 Ga0495644_0074718 Ga0495644_0074718_79_1086 333
107 3300046524 Ga0495648_0000052 Ga0495648_0000052_51884_52891 333
108 3300046528 Ga0495642_0001742 Ga0495642_0001742_3110_4123 333
109 3300046528 Ga0495642_0002465 Ga0495642_0002465_4300_5307 333
110 3300046528 Ga0495642_0008812 Ga0495642_0008812_2424_3431 333
111 3300046542 Ga0495597_0001114 Ga0495597_0001114_1626_2633 333
112 3300046542 Ga0495597_0074498 Ga0495597_0074498_11_1060 333
113 3300046558 Ga0495633_0002312 Ga0495633_0002312_2145_3152 333
114 3300046558 Ga0495633_0007941 Ga0495633_0007941_970_1977 333
115 3300046558 Ga0495633_0022448 Ga0495633_0022448_657_1664 333
116 3300046558 Ga0495633_0029695 Ga0495633_0029695_234_1241 333
117 3300046616 Ga0495668_0001653 Ga0495668_0001653_441_1448 333
118 3300046648 Ga0495611_0043730 Ga0495611_0043730_606_1613 333
119 3300046665 Ga0495661_0012239 Ga0495661_0012239_2059_3072 333
120 3300046665 Ga0495661_0018885 Ga0495661_0018885_1985_2992 333
121 3300046665 Ga0495661_0032504 Ga0495661_0032504_1285_2292 333
122 3300046674 Ga0495588_0041671 Ga0495588_0041671_1198_2205 333
123 3300046684 Ga0495669_0007413 Ga0495669_0007413_1273_2280 333
124 3300046691 Ga0495670_0001461 Ga0495670_0001461_9210_10217 333
125 3300046691 Ga0495670_0001957 Ga0495670_0001957_9065_10072 333
126 3300046692 Ga0495671_0019440 Ga0495671_0019440_269_1276 333
127 3300046692 Ga0495671_0021184 Ga0495671_0021184_1167_2180 333
128 3300046794 Ga0495589_0010393 Ga0495589_0010393_3476_4483 333
129 3300046810 Ga0495660_0057076 Ga0495660_0057076_393_1400 333
130 3300047323 Ga0495683_0000391 Ga0495683_0000391_25232_26239 333
131 3300047323 Ga0495683_0001276 Ga0495683_0001276_9589_10596 333
132 3300047323 Ga0495683_0098857 Ga0495683_0098857_119_1126 333
133 3300047470 Ga0495681_0024687 Ga0495681_0024687_751_1758 333
134 3300047470 Ga0495681_0065822 Ga0495681_0065822_348_1385 333
135 3300048091 Ga0495626_0097627 Ga0495626_0097627_114_1121 333
136 3300048918 Ga0496115_0001806 Ga0496115_0001806_8942_9955 333
137 3300049460 Ga0495682_0017632 Ga0495682_0017632_1106_2113 333
138 3300049460 Ga0495682_0054902 Ga0495682_0054902_141_1178 333
139 3300032002 Ga0307416_100310205 Ga0307416_1003102052 334
140 3300037471 Ga0395905_0050064 Ga0395905_0050064_2752_3762 334
141 3300037471 Ga0395905_0358788 Ga0395905_0358788_252_1313 334
142 3300044658 Ga0466972_0053452 Ga0466972_0053452_400_1410 334
143 3300046455 Ga0495603_0013708 Ga0495603_0013708_350_1363 334
144 3300046459 Ga0495629_0169254 Ga0495629_0169254_369_1382 334
145 3300046460 Ga0495638_0014641 Ga0495638_0014641_2613_3650 334
146 3300046491 Ga0495584_0006338 Ga0495584_0006338_2607_3626 334
147 3300046491 Ga0495584_0023797 Ga0495584_0023797_127_1140 334
148 3300046499 Ga0495594_0050070 Ga0495594_0050070_1248_2261 334
149 3300046507 Ga0495606_0016428 Ga0495606_0016428_1477_2514 334
150 3300046518 Ga0495631_0017997 Ga0495631_0017997_1788_2825 334
151 3300046522 Ga0495643_0001092 Ga0495643_0001092_25833_26843 334
152 3300046528 Ga0495642_0010747 Ga0495642_0010747_1757_2767 334
153 3300046542 Ga0495597_0002803 Ga0495597_0002803_4498_5511 334
154 3300046542 Ga0495597_0011204 Ga0495597_0011204_3226_4236 334
155 3300046616 Ga0495668_0033558 Ga0495668_0033558_745_1755 334
156 3300046665 Ga0495661_0007205 Ga0495661_0007205_476_1486 334
157 3300047321 Ga0495676_0033513 Ga0495676_0033513_2645_3658 334
158 3300047443 Ga0495687_000849 Ga0495687_000849_7610_8620 334
159 3300047445 Ga0495677_0017569 Ga0495677_0017569_1012_2031 334
160 3300047447 Ga0495685_014074 Ga0495685_014074_270_1307 334
161 3300047470 Ga0495681_0027432 Ga0495681_0027432_1834_2847 334
162 3300048091 Ga0495626_0007707 Ga0495626_0007707_1930_2943 334
163 3300048918 Ga0496115_0073774 Ga0496115_0073774_12_1025 334
164 3300061719 Ga0466962_0078115 Ga0466962_0078115_206_1216 334
165 3300031852 Ga0307410_10032097 Ga0307410_100320975 335
166 3300042876 Ga0451577_0013388 Ga0451577_0013388_166_1323 335
167 3300042876 Ga0451577_0203690 Ga0451577_0203690_567_1625 335
168 3300044712 Ga0453684_0000348 Ga0453684_0000348_179113_180171 335
169 3300045051 Ga0451576_0009412 Ga0451576_0009412_9495_10553 335
170 3300046455 Ga0495603_0054183 Ga0495603_0054183_412_1428 335
171 3300046459 Ga0495629_0004616 Ga0495629_0004616_4140_5156 335
172 3300046473 Ga0495582_0016005 Ga0495582_0016005_1221_2237 335
173 3300046491 Ga0495584_0018495 Ga0495584_0018495_2149_3165 335
174 3300046526 Ga0495666_0005810 Ga0495666_0005810_3201_4217 335
175 3300046535 Ga0495586_0005300 Ga0495586_0005300_1855_2871 335
176 3300046536 Ga0495587_0090702 Ga0495587_0090702_731_1747 335
177 3300046542 Ga0495597_0004981 Ga0495597_0004981_4372_5388 335
178 3300046557 Ga0495622_0011886 Ga0495622_0011886_2195_3211 335
179 3300046557 Ga0495622_0072291 Ga0495622_0072291_531_1547 335
180 3300046642 Ga0495634_0051844 Ga0495634_0051844_556_1572 335
181 3300046660 Ga0495625_0113518 Ga0495625_0113518_87_1103 335
182 3300046674 Ga0495588_0111854 Ga0495588_0111854_173_1189 335
183 3300046679 Ga0495623_0048185 Ga0495623_0048185_1647_2663 335
184 3300046689 Ga0495613_0047496 Ga0495613_0047496_389_1405 335
185 3300046809 Ga0495600_0031145 Ga0495600_0031145_1783_2799 335
186 3300047315 Ga0495581_0104786 Ga0495581_0104786_158_1174 335
187 3300047317 Ga0495604_0163558 Ga0495604_0163558_441_1457 335
188 3300047319 Ga0495674_0123607 Ga0495674_0123607_1079_2095 335
189 3300047321 Ga0495676_0013901 Ga0495676_0013901_4963_5979 335
190 3300047673 Ga0495593_0023743 Ga0495593_0023743_937_1953 335
191 3300047673 Ga0495593_0155523 Ga0495593_0155523_102_1118 335
192 3300048088 Ga0495602_0076195 Ga0495602_0076195_1594_2610 335
193 3300048089 Ga0495614_0060228 Ga0495614_0060228_571_1587 335
194 3300048091 Ga0495626_0052049 Ga0495626_0052049_720_1742 335
195 3300059477 Ga0587084_000997 Ga0587084_000997_688_1734 335
196 3300059491 Ga0587070_004241 Ga0587070_004241_407_1453 335
197 3300059493 Ga0587077_004239 Ga0587077_004239_387_1433 335
198 3300059506 Ga0587085_000544 Ga0587085_000544_1399_2445 335
199 3300059510 Ga0587090_002538 Ga0587090_002538_550_1596 335
200 3300059512 Ga0587092_006678 Ga0587092_006678_230_1276 335
201 3300059639 Ga0587062_000392 Ga0587062_000392_1394_2440 335
202 3300059640 Ga0587067_007354 Ga0587067_007354_393_1439 335
203 3300059641 Ga0587068_006132 Ga0587068_006132_251_1297 335
204 3300059643 Ga0587072_000255 Ga0587072_000255_3420_4466 335
205 3300059645 Ga0587076_001591 Ga0587076_001591_729_1775 335
206 3300059652 Ga0587107_004520 Ga0587107_004520_118_1164 335
207 3300060346 Ga0587111_0000133 Ga0587111_0000133_3009_4055 335
208 3300006028 Ga0070717_10049044 Ga0070717_100490442 336
209 3300025928 Ga0207700_10061723 Ga0207700_100617233 336
210 3300044842 Ga0466957_0043911 Ga0466957_0043911_56_1279 336
211 3300045051 Ga0451576_0003196 Ga0451576_0003196_1820_2884 336
212 3300049823 Ga0501044_0064526 Ga0501044_0064526_1239_2408 340
213 3300005334 Ga0068869_100072196 Ga0068869_1000721963 342
214 3300005614 Ga0068856_100311681 Ga0068856_1003116812 342
215 3300025942 Ga0207689_10087977 Ga0207689_100879771 342
216 3300026078 Ga0207702_10251503 Ga0207702_102515032 342
217 3300028381 Ga0268264_10212724 Ga0268264_102127242 342
218 3300031824 Ga0307413_10205516 Ga0307413_102055162 342
219 3300048905 Ga0496102_0031083 Ga0496102_0031083_3335_4363 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

86

253

0.91

PF13186

SPASM

Iron-sulfur cluster-binding domain

337

403

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2z2u-assembly1.cif.gz_A crystal structure of archaeal tyw1 0.84 66 194
6efn-assembly1.cif.gz_A-2 structure of a ripp maturase, skfb 0.8009 12 331
7tol-assembly1.cif.gz_A x-ray crystal structure of glycerol dibiphytanyl glycerol tetraether - macrocyclic archaeol synthase (gdgt-mas) from methanocaldococcus jannaschii with archaeal lipid, 5'deoxyadenosine, and methionine bound 0.7715 16 202
5v1s-assembly1.cif.gz_A crystal structure of streptococcus suis suib bound to s-adenosylmethionine 0.7648 14 339
5v1q-assembly1.cif.gz_A crystal structure of streptococcus suis suib 0.7538 14 321
ID Description Score Start End Superfamily
af_O33183_77_264_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8064 18 201 3.20.20.70
af_Q58214_34_265_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7843 20 252 3.20.20.70
af_Q58624_1_230_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7664 27 253 3.20.20.70
af_P9WJ79_7_303_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7648 16 320 3.20.20.70
af_O33183_77_264_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7562 18 201 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A3N5Q4W8-F1-model_v4 Radical SAM protein 0.9635 15 203 GO:0003824
GO:0046872
GO:0051536
AF-X0RV42-F1-model_v4 Radical SAM core domain-containing protein 0.9598 51 172 GO:0003824
GO:0046872
GO:0051536
AF-A0A3N5YSV4-F1-model_v4 Radical SAM protein 0.9539 9 265 GO:0003824
GO:0046872
GO:0051536
AF-A0A1Q7WIL7-F1-model_v4 Pyrroloquinoline quinone biosynthesis protein PqqE 0.9536 12 342 GO:0003824
GO:0046872
GO:0051539
AF-A0A847DR14-F1-model_v4 Radical SAM protein 0.9535 10 342 GO:0003824
GO:0046872
GO:0051536

Feature Viewer

pLDDT pTM Quality
89.3 0.89 High
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Predicted Structure (AlphaFold2)

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