F327361

General Info

Members Datasets Scaffolds Average Seq Length
216 155 197 297

Family's Representative Sequence

Representative Sequence 3300005530|Ga0070679_100244179|Ga0070679_1002441791
Length 329
Sequence MPRQTINDLLAFRAVARERSFTRAAAQIGVSPSALSHRIRALEEGLGIRLLTRTTRSVAPTEAGERLLASIGPHFDGIEAELAALNELRDKPAGTIRITAGDHVSESILEPAVARLLRDYPDIRVEISVNLSFVDIVAERFDGGIRLGETVAQDMVAVRIGPDMRMAAVGAPSYFANRKLPRTPHDLAEHNCINLRFPTLGGLYAWEFEKGGRALNVRVEGQLIVNDPSLARQAAVNAVGIAYLPEDFLKDDIDAGRLTRVLGDWSPPFPGYYLYYPSRRQQSPAFALLVDALRYRGTEARLARRFADGQPRSGCFWGGDRQPPGTHKA

Samples

Sample ID Description Type Environment
1 2510917028 Rhizobium sp. CF122 Isolate Rhizosphere
2 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
3 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
4 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
5 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
6 2643221599 Rhizobium sp. Root708 Isolate Unclassified
7 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
8 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
9 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
10 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
11 2937848649 Mesorhizobium sp. WSM4310 Isolate Unclassified
12 2996887358 Rhizobium sp. R711 Isolate Nodule
13 3004334049 Mesorhizobium huakuii 583 Isolate Unclassified
14 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
15 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
16 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
22 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
23 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
26 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
27 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
28 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
29 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
30 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
31 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
32 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
33 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
37 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
38 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
50 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
60 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
91 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
98 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
99 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
100 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
101 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
102 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
103 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
104 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
105 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
106 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
110 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
111 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
112 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
113 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
114 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
115 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
116 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
119 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
120 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
121 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
122 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
123 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
124 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
125 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
126 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
127 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
128 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
129 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
130 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
137 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
144 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
145 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
146 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
147 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
148 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
149 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
150 641736151 Paraburkholderia graminis C4D1M Isolate Rhizoplane
151 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
152 8005258706 Rhizobium sp. R693 Isolate Nodule
153 8005321885 Rhizobium sp. R72 Isolate Nodule
154 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
155 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.2
Metatranscriptomes 0
Isolates 8.8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.56
Nodule 3.7
Rhizoplane 5.56
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 10.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24738J21930_10002535 3300002075 Bacteria 4744
2 rootH2_10248359 3300003320 Bacteria 1960
3 JGI25160J50197_1027346 3300003354 Bacteria 1555
4 Ga0070658_10001239 3300005327 Bacteria 21882
5 Ga0070658_10063396 3300005327 Bacteria 3013
6 Ga0070676_10158214 3300005328 Bacteria 1456
7 Ga0070670_100030705 3300005331 Bacteria 4628
8 Ga0070680_100408200 3300005336 Bacteria 1158
9 Ga0070660_100022915 3300005339 Bacteria 4624
10 Ga0070660_100033589 3300005339 Bacteria 3868
11 Ga0070660_100052386 3300005339 Bacteria 3146
12 Ga0070660_100302981 3300005339 Bacteria 1310
13 Ga0070661_100017485 3300005344 Bacteria 5088
14 Ga0070661_100076302 3300005344 Bacteria 2470
15 Ga0070661_100229778 3300005344 Bacteria 1425
16 Ga0070692_10008871 3300005345 Bacteria 4505
17 Ga0070669_100208040 3300005353 Bacteria 1542
18 Ga0070671_100021097 3300005355 Bacteria 5319
19 Ga0070671_100025874 3300005355 Bacteria 4818
20 Ga0070659_100065390 3300005366 Bacteria 2880
21 Ga0070659_100305522 3300005366 Bacteria 1327
22 Ga0070667_100014258 3300005367 Bacteria 6563
23 Ga0070663_100029174 3300005455 Bacteria 3766
24 Ga0070662_100083988 3300005457 Bacteria 2378
25 Ga0070681_10666260 3300005458 Bacteria 956
26 Ga0068867_100246301 3300005459 Bacteria 1451
27 Ga0070679_100077639 3300005530 Bacteria 3310
28 Ga0070679_100244179 3300005530 Bacteria 1753
29 Ga0070684_100624889 3300005535 Bacteria 1002
30 Ga0068853_100157568 3300005539 Bacteria 2046
31 Ga0070664_100160213 3300005564 Bacteria 1991
32 Ga0068854_100039892 3300005578 Bacteria 3310
33 Ga0068854_100137229 3300005578 Bacteria 1873
34 Ga0068856_100046350 3300005614 Bacteria 4282
35 Ga0068852_100065970 3300005616 Bacteria 3160
36 Ga0068852_100195461 3300005616 Bacteria 1911
37 Ga0068852_100219957 3300005616 Bacteria 1806
38 Ga0068863_100057730 3300005841 Bacteria 3673
39 Ga0068863_100097528 3300005841 Bacteria 2791
40 Ga0068862_100021491 3300005844 Bacteria 5393
41 Ga0070712_100025978 3300006175 Bacteria 3897
42 Ga0075367_10072139 3300006178 Bacteria 2078
43 Ga0105240_10000034 3300009093 Bacteria 278179
44 Ga0105245_10101467 3300009098 Bacteria 2664
45 Ga0105248_10438083 3300009177 Bacteria 1472
46 Ga0105248_10633322 3300009177 Bacteria 1207
47 Ga0105237_10631282 3300009545 Bacteria 1078
48 Ga0105238_10004050 3300009551 Bacteria 14530
49 Ga0105249_10035462 3300009553 Bacteria 4524
50 Ga0123341_1049030 3300009765 Bacteria 2442
51 Ga0123342_1020411 3300009766 Bacteria 4846
52 Ga0105239_10000028 3300010375 Bacteria 243470
53 Ga0105246_10323053 3300011119 Bacteria 1255
54 Ga0157373_10041859 3300013100 Bacteria 3276
55 Ga0157371_10070407 3300013102 Bacteria 2476
56 Ga0157370_10068458 3300013104 Bacteria 3355
57 Ga0157370_10088110 3300013104 Bacteria 2915
58 Ga0157369_10031664 3300013105 Bacteria 5821
59 Ga0157369_10149394 3300013105 Bacteria 2470
60 Ga0157372_10075452 3300013307 Bacteria 3804
61 Ga0157372_10100545 3300013307 Bacteria 3300
62 Ga0157379_10223391 3300014968 Bacteria 1707
63 Ga0213876_10103752 3300021384 Bacteria 1508
64 Ga0209148_1010752 3300025254 Bacteria 1725
65 Ga0209025_1003075 3300025294 Bacteria 16381
66 Ga0207426_1000727 3300025302 Bacteria 37813
67 Ga0209051_1061748 3300025303 Bacteria 1176
68 Ga0207680_10034583 3300025903 Bacteria 2893
69 Ga0207705_10003117 3300025909 Bacteria 12645
70 Ga0207695_10000101 3300025913 Bacteria 258504
71 Ga0207671_10371443 3300025914 Bacteria 1136
72 Ga0207693_10038974 3300025915 Bacteria 3741
73 Ga0207657_10004810 3300025919 Bacteria 14233
74 Ga0207657_10008064 3300025919 Bacteria 10740
75 Ga0207657_10059731 3300025919 Bacteria 3274
76 Ga0207657_10070176 3300025919 Bacteria 2970
77 Ga0207649_10031614 3300025920 Bacteria 3147
78 Ga0207649_10120893 3300025920 Bacteria 1765
79 Ga0207652_10120250 3300025921 Bacteria 2336
80 Ga0207694_10003879 3300025924 Bacteria 11820
81 Ga0207650_10022160 3300025925 Bacteria 4496
82 Ga0207644_10001487 3300025931 Bacteria 15074
83 Ga0207644_10004039 3300025931 Bacteria 9521
84 Ga0207690_10030179 3300025932 Bacteria 3455
85 Ga0207706_10137788 3300025933 Bacteria 2147
86 Ga0207706_10223126 3300025933 Bacteria 1650
87 Ga0207711_10013348 3300025941 Bacteria 6823
88 Ga0207679_10480939 3300025945 Bacteria 1105
89 Ga0207667_10159644 3300025949 Bacteria 2319
90 Ga0207651_10263238 3300025960 Bacteria 1417
91 Ga0207668_10240584 3300025972 Bacteria 1464
92 Ga0207640_10030965 3300025981 Bacteria 3301
93 Ga0207658_10049920 3300025986 Bacteria 3076
94 Ga0207639_10139458 3300026041 Bacteria 2018
95 Ga0207678_10299412 3300026067 Bacteria 1382
96 Ga0207702_10277412 3300026078 Bacteria 1583
97 Ga0207676_10083581 3300026095 Bacteria 2600
98 Ga0207674_10007984 3300026116 Bacteria 12281
99 Ga0207698_10008867 3300026142 Bacteria 6377
100 Ga0207698_10202672 3300026142 Bacteria 1778
101 Ga0209813_10014711 3300027866 Bacteria 2111
102 Ga0307507_10023067 3300033179 Bacteria 6849
103 Ga0395899_0000230 3300037312 Bacteria 76090
104 Ga0395899_0000503 3300037312 Bacteria 43549
105 Ga0395899_0015028 3300037312 Bacteria 5902
106 Ga0395899_0023465 3300037312 Bacteria 4671
107 Ga0395899_0026343 3300037312 Bacteria 4387
108 Ga0395900_0000124 3300037418 Bacteria 133210
109 Ga0395900_0000545 3300037418 Bacteria 52739
110 Ga0395900_0003514 3300037418 Bacteria 16923
111 Ga0395900_0356161 3300037418 Bacteria 1436
112 Ga0395898_0000315 3300037466 Bacteria 111811
113 Ga0395898_0024479 3300037466 Bacteria 6089
114 Ga0395898_0038456 3300037466 Bacteria 4742
115 Ga0395898_0040789 3300037466 Bacteria 4588
116 Ga0395905_0000005 3300037471 Bacteria 557808
117 Ga0395905_0012663 3300037471 Bacteria 8115
118 Ga0395905_0023291 3300037471 Bacteria 5854
119 Ga0395905_0084071 3300037471 Bacteria 2981
120 Ga0395905_0099693 3300037471 Bacteria 2728
121 Ga0395905_0323946 3300037471 Bacteria 1431
122 Ga0395901_0000031 3300038443 Bacteria 241733
123 Ga0395901_0000242 3300038443 Bacteria 68210
124 Ga0395901_0031894 3300038443 Bacteria 5433
125 Ga0395901_0068248 3300038443 Bacteria 3704
126 Ga0395901_0107347 3300038443 Bacteria 2930
127 Ga0395901_0203681 3300038443 Bacteria 2074
128 Ga0395901_0308145 3300038443 Bacteria 1640
129 Ga0436365_0328662 3300039437 Bacteria 4729
130 Ga0436365_1201209 3300039437 Bacteria 12682
131 Ga0439455_0010422 3300042012 Bacteria 2044
132 Ga0439458_0000020 3300042157 Bacteria 25235
133 Ga0466969_0027714 3300044656 Bacteria 2900
134 Ga0466969_0117673 3300044656 Bacteria 1239
135 Ga0466972_0002117 3300044658 Bacteria 9744
136 Ga0466966_0050816 3300044684 Bacteria 2636
137 Ga0466966_0093095 3300044684 Bacteria 1869
138 Ga0466961_0109733 3300044693 Bacteria 1737
139 Ga0466961_0122020 3300044693 Bacteria 1635
140 Ga0466961_0169459 3300044693 Bacteria 1358
141 Ga0466964_0133786 3300044706 Bacteria 1132
142 Ga0466971_0009213 3300044719 Bacteria 4315
143 Ga0466968_0093084 3300044735 Bacteria 1338
144 Ga0466970_0001282 3300044765 Bacteria 12154
145 Ga0466970_0032468 3300044765 Bacteria 2758
146 Ga0466957_0273041 3300044842 Bacteria 1129
147 Ga0466957_0314611 3300044842 Bacteria 1055
148 Ga0466959_0032737 3300045049 Bacteria 3848
149 Ga0466959_0090969 3300045049 Bacteria 2191
150 Ga0466959_0182606 3300045049 Bacteria 1467
151 Ga0466958_0015925 3300045836 Bacteria 4322
152 Ga0466958_0162076 3300045836 Bacteria 1413
153 Ga0466967_0044109 3300045976 Bacteria 3865
154 Ga0466967_0103121 3300045976 Bacteria 2610
155 Ga0466967_0147832 3300045976 Bacteria 2193
156 Ga0466967_0469657 3300045976 Bacteria 1231
157 Ga0495638_0000147 3300046460 Bacteria 110817
158 Ga0495653_0247968 3300046463 Bacteria 1183
159 Ga0495584_0013660 3300046491 Bacteria 4142
160 Ga0495610_0003374 3300046512 Bacteria 12492
161 Ga0495665_0012462 3300046531 Bacteria 4601
162 Ga0495625_0121006 3300046660 Bacteria 1781
163 Ga0495588_0042915 3300046674 Bacteria 2313
164 Ga0495669_0051740 3300046684 Bacteria 1844
165 Ga0495626_0003050 3300048091 Bacteria 10998
166 Ga0496104_0022010 3300048907 Bacteria 5857
167 Ga0496104_0162761 3300048907 Bacteria 2140
168 Ga0496105_0017355 3300048908 Bacteria 5768
169 Ga0496105_0026956 3300048908 Bacteria 4690
170 Ga0496106_0252507 3300048909 Bacteria 1410
171 Ga0496109_0122087 3300048912 Bacteria 2427
172 Ga0496110_0538621 3300048913 Bacteria 1061
173 Ga0496111_0265925 3300048914 Bacteria 1272
174 Ga0496112_0111369 3300048915 Bacteria 2707
175 Ga0496115_0060275 3300048918 Bacteria 3057
176 Ga0496116_0135688 3300048919 Bacteria 1394
177 Ga0496118_0001577 3300048921 Bacteria 33807
178 Ga0496119_0000030 3300048922 Bacteria 240167
179 Ga0496119_0039791 3300048922 Bacteria 3018
180 Ga0496120_0000033 3300048923 Bacteria 218355
181 Ga0496122_0047396 3300048925 Bacteria 3318
182 Ga0496124_0004186 3300048927 Bacteria 16993
183 Ga0496125_0139010 3300048928 Bacteria 1692
184 Ga0496126_0058828 3300048929 Bacteria 3463
185 Ga0501033_0083137 3300049570 Bacteria 2347
186 Ga0501034_0030817 3300049571 Bacteria 5451
187 Ga0501036_0038591 3300049572 Bacteria 4042
188 Ga0501043_0008788 3300049579 Bacteria 7950
189 Ga0501047_0031841 3300049581 Bacteria 5088
190 Ga0501035_0042903 3300049822 Bacteria 4077
191 Ga0501044_0021067 3300049823 Bacteria 6959
192 nmdc:mga0yw44_25750_c1 3300050492 Bacteria 3351
193 nmdc:mga0sz30_13281_c2 3300050516 Bacteria 1256
194 Ga0500559_0000048 3300053136 Bacteria 93755
195 Ga0500639_034262 3300053163 Bacteria 2684
196 Ga0500645_001044 3300053730 Bacteria 15423
197 Ga0466962_0012354 3300061719 Bacteria 4105

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044693 Ga0466961_0109733 Ga0466961_0109733_875_1681 268
2 3300009098 Ga0105245_10101467 Ga0105245_101014671 291
3 iso_pu_bacteria 2510917028 2511182429 293
4 iso_pu_bacteria 2513237138 2513865973 293
5 iso_pu_bacteria 2582581867 2585401005 293
6 iso_pu_bacteria 2585427590 2585822094 293
7 iso_pu_bacteria 2643221599 2644006992 293
8 iso_pu_bacteria 2643221614 2644088460 293
9 iso_pu_bacteria 2643221661 2644343696 293
10 iso_pu_bacteria 2643221666 2644368826 293
11 iso_pu_bacteria 2842509118 2842511695 293
12 iso_pu_bacteria 2937848649 2937852577 293
13 iso_pu_bacteria 2996887358 2996892769 293
14 iso_pu_bacteria 8001845381 8001847908 293
15 iso_pu_bacteria 8005258706 8005259464 293
16 iso_pu_bacteria 8005321885 8005327296 293
17 iso_pu_bacteria 8005542996 8005545966 293
18 iso_pu_bacteria 8024486573 8024490002 293
19 3300048918 Ga0496115_0060275 Ga0496115_0060275_211_1101 294
20 3300003320 rootH2_10248359 rootH2_102483593 295
21 3300003354 JGI25160J50197_1027346 JGI25160J50197_10273461 295
22 3300005327 Ga0070658_10001239 Ga0070658_1000123921 295
23 3300005327 Ga0070658_10063396 Ga0070658_100633964 295
24 3300005328 Ga0070676_10158214 Ga0070676_101582142 295
25 3300005331 Ga0070670_100030705 Ga0070670_1000307055 295
26 3300005336 Ga0070680_100408200 Ga0070680_1004082001 295
27 3300005339 Ga0070660_100022915 Ga0070660_1000229156 295
28 3300005339 Ga0070660_100033589 Ga0070660_1000335892 295
29 3300005339 Ga0070660_100052386 Ga0070660_1000523862 295
30 3300005339 Ga0070660_100302981 Ga0070660_1003029811 295
31 3300005344 Ga0070661_100017485 Ga0070661_1000174852 295
32 3300005344 Ga0070661_100076302 Ga0070661_1000763021 295
33 3300005344 Ga0070661_100229778 Ga0070661_1002297781 295
34 3300005345 Ga0070692_10008871 Ga0070692_100088714 295
35 3300005353 Ga0070669_100208040 Ga0070669_1002080402 295
36 3300005355 Ga0070671_100021097 Ga0070671_1000210971 295
37 3300005355 Ga0070671_100025874 Ga0070671_1000258742 295
38 3300005366 Ga0070659_100065390 Ga0070659_1000653901 295
39 3300005366 Ga0070659_100305522 Ga0070659_1003055222 295
40 3300005367 Ga0070667_100014258 Ga0070667_1000142584 295
41 3300005455 Ga0070663_100029174 Ga0070663_1000291743 295
42 3300005457 Ga0070662_100083988 Ga0070662_1000839884 295
43 3300005458 Ga0070681_10666260 Ga0070681_106662601 295
44 3300005459 Ga0068867_100246301 Ga0068867_1002463011 295
45 3300005530 Ga0070679_100077639 Ga0070679_1000776394 295
46 3300005535 Ga0070684_100624889 Ga0070684_1006248891 295
47 3300005539 Ga0068853_100157568 Ga0068853_1001575683 295
48 3300005564 Ga0070664_100160213 Ga0070664_1001602131 295
49 3300005578 Ga0068854_100039892 Ga0068854_1000398922 295
50 3300005578 Ga0068854_100137229 Ga0068854_1001372292 295
51 3300005614 Ga0068856_100046350 Ga0068856_1000463502 295
52 3300005616 Ga0068852_100065970 Ga0068852_1000659704 295
53 3300005616 Ga0068852_100195461 Ga0068852_1001954612 295
54 3300005616 Ga0068852_100219957 Ga0068852_1002199572 295
55 3300005841 Ga0068863_100057730 Ga0068863_1000577304 295
56 3300005841 Ga0068863_100097528 Ga0068863_1000975282 295
57 3300005844 Ga0068862_100021491 Ga0068862_1000214914 295
58 3300006175 Ga0070712_100025978 Ga0070712_1000259783 295
59 3300006178 Ga0075367_10072139 Ga0075367_100721392 295
60 3300009093 Ga0105240_10000034 Ga0105240_1000003483 295
61 3300009177 Ga0105248_10438083 Ga0105248_104380831 295
62 3300009177 Ga0105248_10633322 Ga0105248_106333222 295
63 3300009545 Ga0105237_10631282 Ga0105237_106312821 295
64 3300009551 Ga0105238_10004050 Ga0105238_100040509 295
65 3300009553 Ga0105249_10035462 Ga0105249_100354623 295
66 3300009765 Ga0123341_1049030 Ga0123341_10490303 295
67 3300009766 Ga0123342_1020411 Ga0123342_10204112 295
68 3300010375 Ga0105239_10000028 Ga0105239_10000028158 295
69 3300011119 Ga0105246_10323053 Ga0105246_103230532 295
70 3300013100 Ga0157373_10041859 Ga0157373_100418592 295
71 3300013102 Ga0157371_10070407 Ga0157371_100704071 295
72 3300013104 Ga0157370_10068458 Ga0157370_100684582 295
73 3300013104 Ga0157370_10088110 Ga0157370_100881104 295
74 3300013105 Ga0157369_10031664 Ga0157369_100316645 295
75 3300013105 Ga0157369_10149394 Ga0157369_101493944 295
76 3300013307 Ga0157372_10075452 Ga0157372_100754522 295
77 3300013307 Ga0157372_10100545 Ga0157372_101005452 295
78 3300014968 Ga0157379_10223391 Ga0157379_102233912 295
79 3300021384 Ga0213876_10103752 Ga0213876_101037522 295
80 3300025254 Ga0209148_1010752 Ga0209148_10107522 295
81 3300025294 Ga0209025_1003075 Ga0209025_100307512 295
82 3300025302 Ga0207426_1000727 Ga0207426_10007278 295
83 3300025303 Ga0209051_1061748 Ga0209051_10617482 295
84 3300025903 Ga0207680_10034583 Ga0207680_100345833 295
85 3300025909 Ga0207705_10003117 Ga0207705_100031176 295
86 3300025913 Ga0207695_10000101 Ga0207695_10000101173 295
87 3300025914 Ga0207671_10371443 Ga0207671_103714431 295
88 3300025915 Ga0207693_10038974 Ga0207693_100389744 295
89 3300025919 Ga0207657_10004810 Ga0207657_100048107 295
90 3300025919 Ga0207657_10008064 Ga0207657_100080648 295
91 3300025919 Ga0207657_10059731 Ga0207657_100597314 295
92 3300025919 Ga0207657_10070176 Ga0207657_100701762 295
93 3300025920 Ga0207649_10031614 Ga0207649_100316141 295
94 3300025920 Ga0207649_10120893 Ga0207649_101208932 295
95 3300025921 Ga0207652_10120250 Ga0207652_101202502 295
96 3300025924 Ga0207694_10003879 Ga0207694_100038797 295
97 3300025925 Ga0207650_10022160 Ga0207650_100221603 295
98 3300025931 Ga0207644_10001487 Ga0207644_100014873 295
99 3300025931 Ga0207644_10004039 Ga0207644_100040392 295
100 3300025932 Ga0207690_10030179 Ga0207690_100301791 295
101 3300025933 Ga0207706_10137788 Ga0207706_101377884 295
102 3300025933 Ga0207706_10223126 Ga0207706_102231261 295
103 3300025941 Ga0207711_10013348 Ga0207711_100133484 295
104 3300025945 Ga0207679_10480939 Ga0207679_104809391 295
105 3300025949 Ga0207667_10159644 Ga0207667_101596442 295
106 3300025960 Ga0207651_10263238 Ga0207651_102632381 295
107 3300025972 Ga0207668_10240584 Ga0207668_102405842 295
108 3300025981 Ga0207640_10030965 Ga0207640_100309652 295
109 3300025986 Ga0207658_10049920 Ga0207658_100499203 295
110 3300026041 Ga0207639_10139458 Ga0207639_101394582 295
111 3300026067 Ga0207678_10299412 Ga0207678_102994121 295
112 3300026078 Ga0207702_10277412 Ga0207702_102774122 295
113 3300026095 Ga0207676_10083581 Ga0207676_100835811 295
114 3300026142 Ga0207698_10008867 Ga0207698_100088674 295
115 3300026142 Ga0207698_10202672 Ga0207698_102026723 295
116 3300027866 Ga0209813_10014711 Ga0209813_100147113 295
117 3300033179 Ga0307507_10023067 Ga0307507_100230674 295
118 3300037312 Ga0395899_0000230 Ga0395899_0000230_64998_65891 295
119 3300037312 Ga0395899_0015028 Ga0395899_0015028_1059_1952 295
120 3300037312 Ga0395899_0023465 Ga0395899_0023465_1564_2466 295
121 3300037312 Ga0395899_0026343 Ga0395899_0026343_663_1556 295
122 3300037418 Ga0395900_0000124 Ga0395900_0000124_116043_116936 295
123 3300037418 Ga0395900_0003514 Ga0395900_0003514_10173_11075 295
124 3300037466 Ga0395898_0024479 Ga0395898_0024479_1908_2801 295
125 3300037466 Ga0395898_0038456 Ga0395898_0038456_3320_4213 295
126 3300037466 Ga0395898_0040789 Ga0395898_0040789_2848_3750 295
127 3300037471 Ga0395905_0012663 Ga0395905_0012663_5126_6019 295
128 3300037471 Ga0395905_0023291 Ga0395905_0023291_617_1510 295
129 3300037471 Ga0395905_0084071 Ga0395905_0084071_390_1283 295
130 3300037471 Ga0395905_0099693 Ga0395905_0099693_1176_2069 295
131 3300037471 Ga0395905_0323946 Ga0395905_0323946_109_1002 295
132 3300038443 Ga0395901_0000031 Ga0395901_0000031_116486_117379 295
133 3300038443 Ga0395901_0031894 Ga0395901_0031894_755_1657 295
134 3300038443 Ga0395901_0068248 Ga0395901_0068248_2330_3223 295
135 3300038443 Ga0395901_0107347 Ga0395901_0107347_882_1775 295
136 3300038443 Ga0395901_0308145 Ga0395901_0308145_188_1081 295
137 3300039437 Ga0436365_0328662 Ga0436365_0328662_1523_2416 295
138 3300039437 Ga0436365_1201209 Ga0436365_1201209_1148_2041 295
139 3300042012 Ga0439455_0010422 Ga0439455_0010422_430_1323 295
140 3300042157 Ga0439458_0000020 Ga0439458_0000020_9650_10543 295
141 3300044656 Ga0466969_0027714 Ga0466969_0027714_1720_2616 295
142 3300044656 Ga0466969_0117673 Ga0466969_0117673_89_982 295
143 3300044658 Ga0466972_0002117 Ga0466972_0002117_8688_9617 295
144 3300044684 Ga0466966_0050816 Ga0466966_0050816_1200_2093 295
145 3300044684 Ga0466966_0093095 Ga0466966_0093095_544_1437 295
146 3300044693 Ga0466961_0122020 Ga0466961_0122020_651_1544 295
147 3300044693 Ga0466961_0169459 Ga0466961_0169459_378_1271 295
148 3300044706 Ga0466964_0133786 Ga0466964_0133786_16_909 295
149 3300044719 Ga0466971_0009213 Ga0466971_0009213_626_1519 295
150 3300044735 Ga0466968_0093084 Ga0466968_0093084_372_1265 295
151 3300044765 Ga0466970_0001282 Ga0466970_0001282_4938_5867 295
152 3300044765 Ga0466970_0032468 Ga0466970_0032468_936_1829 295
153 3300044842 Ga0466957_0273041 Ga0466957_0273041_83_976 295
154 3300044842 Ga0466957_0314611 Ga0466957_0314611_69_962 295
155 3300045049 Ga0466959_0032737 Ga0466959_0032737_2645_3538 295
156 3300045049 Ga0466959_0090969 Ga0466959_0090969_748_1641 295
157 3300045049 Ga0466959_0182606 Ga0466959_0182606_367_1263 295
158 3300045836 Ga0466958_0015925 Ga0466958_0015925_3113_4006 295
159 3300045836 Ga0466958_0162076 Ga0466958_0162076_100_993 295
160 3300045976 Ga0466967_0044109 Ga0466967_0044109_713_1606 295
161 3300045976 Ga0466967_0103121 Ga0466967_0103121_159_1052 295
162 3300046460 Ga0495638_0000147 Ga0495638_0000147_56840_57733 295
163 3300046660 Ga0495625_0121006 Ga0495625_0121006_143_1036 295
164 3300046684 Ga0495669_0051740 Ga0495669_0051740_311_1204 295
165 3300048907 Ga0496104_0022010 Ga0496104_0022010_2445_3338 295
166 3300048907 Ga0496104_0162761 Ga0496104_0162761_437_1330 295
167 3300048908 Ga0496105_0017355 Ga0496105_0017355_318_1211 295
168 3300048908 Ga0496105_0026956 Ga0496105_0026956_205_1098 295
169 3300048909 Ga0496106_0252507 Ga0496106_0252507_131_1024 295
170 3300048912 Ga0496109_0122087 Ga0496109_0122087_1069_1962 295
171 3300048913 Ga0496110_0538621 Ga0496110_0538621_14_907 295
172 3300048914 Ga0496111_0265925 Ga0496111_0265925_264_1157 295
173 3300048915 Ga0496112_0111369 Ga0496112_0111369_1431_2324 295
174 3300048919 Ga0496116_0135688 Ga0496116_0135688_394_1287 295
175 3300048921 Ga0496118_0001577 Ga0496118_0001577_10915_11808 295
176 3300048922 Ga0496119_0000030 Ga0496119_0000030_71911_72804 295
177 3300048922 Ga0496119_0039791 Ga0496119_0039791_529_1422 295
178 3300048923 Ga0496120_0000033 Ga0496120_0000033_167372_168265 295
179 3300048925 Ga0496122_0047396 Ga0496122_0047396_1787_2680 295
180 3300048928 Ga0496125_0139010 Ga0496125_0139010_638_1531 295
181 3300048929 Ga0496126_0058828 Ga0496126_0058828_705_1598 295
182 3300049570 Ga0501033_0083137 Ga0501033_0083137_247_1140 295
183 3300050492 nmdc:mga0yw44_25750_c1 nmdc:mga0yw44_25750_c1_371_1264 295
184 3300050516 nmdc:mga0sz30_13281_c2 nmdc:mga0sz30_13281_c2_135_1028 295
185 3300053136 Ga0500559_0000048 Ga0500559_0000048_21164_22057 295
186 3300053163 Ga0500639_034262 Ga0500639_034262_1236_2129 295
187 3300053730 Ga0500645_001044 Ga0500645_001044_10581_11474 295
188 3300061719 Ga0466962_0012354 Ga0466962_0012354_2607_3500 295
189 iso_pu_bacteria 2599185354 2600202969 295
190 3300026116 Ga0207674_10007984 Ga0207674_100079847 296
191 3300037312 Ga0395899_0000503 Ga0395899_0000503_7528_8424 296
192 3300037418 Ga0395900_0000545 Ga0395900_0000545_6185_7081 296
193 3300037418 Ga0395900_0356161 Ga0395900_0356161_483_1382 296
194 3300037466 Ga0395898_0000315 Ga0395898_0000315_7559_8455 296
195 3300037471 Ga0395905_0000005 Ga0395905_0000005_368333_369229 296
196 3300038443 Ga0395901_0000242 Ga0395901_0000242_5550_6446 296
197 3300038443 Ga0395901_0203681 Ga0395901_0203681_429_1328 296
198 3300045976 Ga0466967_0147832 Ga0466967_0147832_536_1432 296
199 3300045976 Ga0466967_0469657 Ga0466967_0469657_56_952 296
200 3300046491 Ga0495584_0013660 Ga0495584_0013660_112_1005 296
201 3300048927 Ga0496124_0004186 Ga0496124_0004186_9871_10767 296
202 iso_pu_bacteria 641736151 642420983 296
203 3300049571 Ga0501034_0030817 Ga0501034_0030817_2326_3261 297
204 3300049572 Ga0501036_0038591 Ga0501036_0038591_957_1892 297
205 3300049579 Ga0501043_0008788 Ga0501043_0008788_4056_4991 297
206 3300049581 Ga0501047_0031841 Ga0501047_0031841_4160_5059 297
207 3300049822 Ga0501035_0042903 Ga0501035_0042903_1572_2507 297
208 3300049823 Ga0501044_0021067 Ga0501044_0021067_5138_6073 297
209 iso_pu_bacteria 3004334049 3004334971 298
210 3300002075 JGI24738J21930_10002535 JGI24738J21930_100025354 300
211 3300005530 Ga0070679_100244179 Ga0070679_1002441791 300
212 3300046463 Ga0495653_0247968 Ga0495653_0247968_183_1094 300
213 3300046512 Ga0495610_0003374 Ga0495610_0003374_5337_6239 300
214 3300046531 Ga0495665_0012462 Ga0495665_0012462_29_940 300
215 3300046674 Ga0495588_0042915 Ga0495588_0042915_773_1684 300
216 3300048091 Ga0495626_0003050 Ga0495626_0003050_7122_8024 300

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

6

65

0.98

PF03466

LysR_substrate

LysR substrate binding domain

89

297

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.9285 6 70
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8994 5 85
6eo3-assembly1.cif.gz_A conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. s207c p212121 0.8985 5 46
5w43-assembly1.cif.gz_A structure of the two-component response regulator rcsb-dna complex 0.8974 5 46
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.8901 5 87
ID Description Score Start End Superfamily
af_P52044_6_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.959 6 84 1.10.10.10
af_Q57083_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9576 4 81 1.10.10.10
af_P75836_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9535 4 86 1.10.10.10
af_P52696_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9508 6 87 1.10.10.10
af_P0A9F6_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9487 4 84 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4Q3HVU8-F1-model_v4 LysR family transcriptional regulator 0.9804 3 75 GO:0003700
AF-A0A4U6BBZ3-F1-model_v4 LysR family transcriptional regulator 0.8995 148 293 GO:0003700
GO:0006351
GO:0043565
AF-A0A4R3XGC6-F1-model_v4 LysR substrate binding domain-containing protein 0.8982 153 284 GO:0003700
GO:0006351
GO:0043565
AF-A0A4U6BBZ3-F1-model_v4 LysR family transcriptional regulator 0.8939 148 293 GO:0003700
GO:0006351
GO:0043565
AF-A0A7Y8DXJ3-F1-model_v4 deleted 0.891 150 291

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pLDDT pTM Quality
88.23 0.67 Medium
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Predicted Structure (AlphaFold2)

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