F325352

General Info

Members Datasets Scaffolds Average Seq Length
214 131 428 565

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10000137|Ga0265327_10000137136
Length 673
Sequence MQLVKTLTMAVEGLLRIPNQGGLPCTKIFPLHDLPRFVHSFKVRTALLFNYEQSGIAHLTCGYTVTKAGESTSSSCTKGHLSQIAPYPIQSSYFYRYYMASSIVNRKRWNLKEVDADAEAQLCSELPTINPVLCKLLASRGIRNYEEARKFFRPELAHLHDPFLMRGMKEAVQRIMEAIEWHERILVYGDYDVDGTTAVSVVYSFLKMAYPEGDISFYIPHRYREGYGVSKQGIDYARENAYSLLITLDCGIKSTPLIEYARKLNIDVIVCDHHLPDETLPPAFAILNPKQPLCNYPFKELSGCGIGFKLIQALANRLNLPAETYERHLDLVATSIAADIVPIDGENRTLAFFGIKKVNEDPSLSIRTLMEISGIKKTLQVSDLVFVIGPRVNAAGRMDDARKAVMLFIETDPEKSLLIAESLHSDNFDRKEIDRTITEEAMALLQNDRETPSRKSTVLYQPHWHKGVVGIVASRLIDHYYRPTIILTESNGKVTGSARSISGFNIYDAIHECRNLLENYGGHFFAAGMTMMPTKVEEFKTRFEEVVSDRISPELLIPEIRIDAEINFSDIKASFYNIMHQFEPFGPANLRPIFLTRNVKDFRGWSKVVKENHLRLVVQQGLGNTMEGIGFNLAHLYPLIEAGPVDIVYTLEENEFNGTTKLQLKILDIRESS

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
12 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
13 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
14 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
39 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
40 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
42 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
43 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
47 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
49 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
65 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
66 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
67 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
75 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
78 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
79 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
80 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
81 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
86 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
87 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
88 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
91 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
92 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
93 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
94 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
95 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
96 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
97 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
98 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
105 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
106 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
107 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
108 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
109 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
110 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
111 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
112 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
113 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
114 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
115 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
116 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
117 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
118 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
119 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
120 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
121 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
122 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
123 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
124 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
125 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
126 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
127 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
128 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
129 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
130 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
131 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.06
Metatranscriptomes 0
Isolates 7.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.03
Nodule 0
Rhizoplane 0.47
Rhizosphere 60.28
Stem 0
Stem Tuber 0
Unclassified 1.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10000137 3300031251 Bacteria 160704
2 SwRhRL2b_contig_1663676 2162886007 Bacteria 241831
3 JGI24740J21852_10002480 3300001979 Bacteria 8346
4 JGI24739J22299_10000963 3300001989 Bacteria 10708
5 JGI25154J39366_1000020 3300002738 Bacteria 233181
6 JGI25153J46596_10000815 3300003215 Bacteria 19063
7 rootH1_10024721 3300003316 Bacteria 19323
8 rootH1_10072199 3300003316 Bacteria 3075
9 rootH2_10017766 3300003320 Bacteria 41125
10 rootH2_10031527 3300003320 Bacteria 8979
11 rootH2_10132349 3300003320 Bacteria 7039
12 rootL2_10004973 3300003322 Bacteria 24550
13 rootL2_10005322 3300003322 Bacteria 10498
14 rootL2_10035247 3300003322 Bacteria 11890
15 rootL2_10115235 3300003322 Bacteria 26947
16 rootL2_10199059 3300003322 Bacteria 2279
17 rootH1_10009419 3300003323 Bacteria 14741
18 rootH1_10019082 3300003323 Bacteria 13551
19 rootH1_10025005 3300003323 Bacteria 27131
20 rootH1_10043701 3300003323 Bacteria 13292
21 rootH1_10062118 3300003323 Bacteria 3779
22 rootH1_10065950 3300003323 Bacteria 10816
23 rootH1_10095576 3300003323 Bacteria 5959
24 rootH1_10151766 3300003323 Bacteria 5615
25 JGI25160J50197_1001636 3300003354 Bacteria 10992
26 Ga0055535_1001395 3300003761 Bacteria 12493
27 Ga0055528_1000459 3300003790 Bacteria 32506
28 Ga0055530_10005845 3300003791 Bacteria 5701
29 Ga0055530_10020856 3300003791 Bacteria 1945
30 Ga0055531_10000132 3300003794 Bacteria 85251
31 Ga0055531_10000206 3300003794 Bacteria 64979
32 Ga0065165_1000417 3300005262 Bacteria 67578
33 Ga0065704_10070136 3300005289 Bacteria 560402
34 Ga0065704_10079205 3300005289 Bacteria 4228
35 Ga0070659_100007356 3300005366 Bacteria 8000
36 Ga0070665_100030771 3300005548 Bacteria 5402
37 Ga0068854_100084239 3300005578 Bacteria 2352
38 Ga0068856_100034081 3300005614 Bacteria 4987
39 Ga0068856_100174472 3300005614 Unclassified 2162
40 Ga0070716_100010900 3300006173 Bacteria 4571
41 Ga0070716_100065852 3300006173 Bacteria 2111
42 Ga0075428_100079180 3300006844 Bacteria 3587
43 Ga0075431_100027626 3300006847 Bacteria 5823
44 Ga0075429_100027219 3300006880 Bacteria 4962
45 Ga0105240_10000134 3300009093 Bacteria 151778
46 Ga0105240_10085467 3300009093 Bacteria 3865
47 Ga0105240_10175172 3300009093 Bacteria 2536
48 Ga0111539_10003057 3300009094 Bacteria 22170
49 Ga0111539_10009197 3300009094 Bacteria 12490
50 Ga0114129_10073293 3300009147 Unclassified 4770
51 Ga0105237_10003457 3300009545 Bacteria 18748
52 Ga0105239_10000200 3300010375 Bacteria 87728
53 Ga0105239_10023604 3300010375 Bacteria 6772
54 Ga0105239_10081692 3300010375 Bacteria 3558
55 Ga0157373_10012757 3300013100 Bacteria 6175
56 Ga0157370_10059194 3300013104 Bacteria 3641
57 Ga0157369_10024769 3300013105 Bacteria 6667
58 Ga0163162_10011844 3300013306 Bacteria 8507
59 Ga0163162_10035249 3300013306 Bacteria 4982
60 Ga0157372_10009540 3300013307 Bacteria 10315
61 Ga0157372_10254016 3300013307 Bacteria 2041
62 Ga0157380_10001699 3300014326 Bacteria 14541
63 Ga0157376_10162482 3300014969 Bacteria 2026
64 Ga0182005_1000116 3300015265 Bacteria 57638
65 Ga0209436_101172 3300025208 Bacteria 9663
66 Ga0209436_102399 3300025208 Bacteria 5678
67 Ga0209258_100075 3300025242 Bacteria 270751
68 Ga0209646_1000005 3300025246 Bacteria 717627
69 Ga0209026_1000198 3300025250 Bacteria 83656
70 Ga0209148_1000085 3300025254 Bacteria 265193
71 Ga0209673_1000543 3300025273 Bacteria 61360
72 Ga0209564_1001750 3300025295 Bacteria 20266
73 Ga0209564_1002023 3300025295 Bacteria 17606
74 Ga0209758_1001621 3300025297 Bacteria 25635
75 Ga0209758_1016666 3300025297 Bacteria 3715
76 Ga0209050_1000359 3300025298 Bacteria 87723
77 Ga0209050_1001862 3300025298 Bacteria 20327
78 Ga0207426_1000057 3300025302 Bacteria 369548
79 Ga0207426_1000262 3300025302 Bacteria 111889
80 Ga0207426_1003850 3300025302 Bacteria 7739
81 Ga0207426_1003867 3300025302 Bacteria 7720
82 Ga0209257_1000004 3300025304 Bacteria 1678347
83 Ga0209257_1000007 3300025304 Bacteria 1564415
84 Ga0209257_1004357 3300025304 Bacteria 11031
85 Ga0207647_10000347 3300025904 Bacteria 37523
86 Ga0207695_10000010 3300025913 Bacteria 981919
87 Ga0207695_10021723 3300025913 Bacteria 7315
88 Ga0207695_10065232 3300025913 Bacteria 3744
89 Ga0207671_10000067 3300025914 Bacteria 162184
90 Ga0207681_10099414 3300025923 Bacteria 2095
91 Ga0207690_10031555 3300025932 Bacteria 3392
92 Ga0207665_10050227 3300025939 Bacteria 2804
93 Ga0207702_10016271 3300026078 Bacteria 6155
94 Ga0207674_10078499 3300026116 Bacteria 3306
95 Ga0268266_10007200 3300028379 Bacteria 10073
96 Ga0307515_10000094 3300028794 Bacteria 210723
97 Ga0307515_10062179 3300028794 Bacteria 5280
98 Ga0265338_10056501 3300028800 Bacteria 3480
99 Ga0265327_10000089 3300031251 Bacteria 197227
100 Ga0265327_10000370 3300031251 Bacteria 84921
101 Ga0265327_10035979 3300031251 Bacteria 2728
102 Ga0307509_10016710 3300031507 Bacteria 8479
103 Ga0307509_10070114 3300031507 Bacteria 3662
104 Ga0307509_10119905 3300031507 Bacteria 2611
105 Ga0307408_100026762 3300031548 Bacteria 3966
106 Ga0307408_100068013 3300031548 Bacteria 2622
107 Ga0265314_10076851 3300031711 Bacteria 2217
108 Ga0316576_10027413 3300031727 Bacteria 4006
109 Ga0316578_10036288 3300031728 Bacteria 2837
110 Ga0307516_10001566 3300031730 Bacteria 31481
111 Ga0307405_10052442 3300031731 Bacteria 2536
112 Ga0307413_10081842 3300031824 Bacteria 2072
113 Ga0307406_10115581 3300031901 Bacteria 1855
114 Ga0307407_10013214 3300031903 Bacteria 3998
115 Ga0307416_100000513 3300032002 Bacteria 19815
116 Ga0307414_10000056 3300032004 Bacteria 113603
117 Ga0307414_10021031 3300032004 Bacteria 4082
118 Ga0307415_100000558 3300032126 Bacteria 16326
119 Ga0373927_0014813 3300035695 Bacteria 5156
120 Ga0316584_0009246 3300036712 Bacteria 6830
121 Ga0451577_0000618 3300042876 Bacteria 57136
122 Ga0451577_0002214 3300042876 Bacteria 23673
123 Ga0451577_0002409 3300042876 Bacteria 22327
124 Ga0451577_0009797 3300042876 Bacteria 9181
125 Ga0451577_0011089 3300042876 Bacteria 8555
126 Ga0451577_0037426 3300042876 Bacteria 4368
127 Ga0466969_0013327 3300044656 Bacteria 4328
128 Ga0453683_0000246 3300044673 Bacteria 72041
129 Ga0453683_0002305 3300044673 Bacteria 15010
130 Ga0453683_0015319 3300044673 Bacteria 4966
131 Ga0453683_0019954 3300044673 Bacteria 4286
132 Ga0466964_0021260 3300044706 Bacteria 2508
133 Ga0453684_0000259 3300044712 Bacteria 227264
134 Ga0453684_0002831 3300044712 Bacteria 40897
135 Ga0453684_0003418 3300044712 Bacteria 35857
136 Ga0453684_0003784 3300044712 Bacteria 33412
137 Ga0453684_0004415 3300044712 Bacteria 29741
138 Ga0453684_0013493 3300044712 Bacteria 13259
139 Ga0453684_0019446 3300044712 Bacteria 10342
140 Ga0453684_0025322 3300044712 Bacteria 8620
141 Ga0453684_0027672 3300044712 Bacteria 8118
142 Ga0453684_0063573 3300044712 Bacteria 4720
143 Ga0453684_0092214 3300044712 Bacteria 3735
144 Ga0453684_0119504 3300044712 Bacteria 3185
145 Ga0453684_0132074 3300044712 Bacteria 2995
146 Ga0453684_0179601 3300044712 Bacteria 2486
147 Ga0453684_0196638 3300044712 Bacteria 2354
148 Ga0453684_0223023 3300044712 Bacteria 2182
149 Ga0451576_0000090 3300045051 Bacteria 231703
150 Ga0451576_0000352 3300045051 Bacteria 110468
151 Ga0451576_0001968 3300045051 Bacteria 32669
152 Ga0451576_0027645 3300045051 Bacteria 6089
153 Ga0451576_0027756 3300045051 Bacteria 6077
154 Ga0451576_0038161 3300045051 Bacteria 5084
155 Ga0451576_0074009 3300045051 Bacteria 3545
156 Ga0451576_0075925 3300045051 Bacteria 3497
157 Ga0451576_0081488 3300045051 Bacteria 3365
158 Ga0495638_0000004 3300046460 Bacteria 700795
159 Ga0495632_0037942 3300046519 Bacteria 2441
160 Ga0495633_0000022 3300046558 Bacteria 226582
161 Ga0495668_0000451 3300046616 Bacteria 52539
162 Ga0495636_0000108 3300047318 Bacteria 34619
163 Ga0495674_0101027 3300047319 Unclassified 2454
164 Ga0495680_0147164 3300047322 Bacteria 1720
165 Ga0495686_0000832 3300047472 Bacteria 39687
166 Ga0496114_0004347 3300048917 Bacteria 10965
167 Ga0496121_0000010 3300048924 Bacteria 793488
168 Ga0501300_000832 3300049523 Bacteria 4701
169 Ga0501202_000788 3300049652 Bacteria 4753
170 Ga0501206_000938 3300049653 Bacteria 3602
171 Ga0501257_002437 3300049686 Bacteria 3919
172 Ga0501241_000736 3300049758 Bacteria 7073
173 Ga0501264_000350 3300049761 Bacteria 7190
174 Ga0501269_001621 3300049766 Bacteria 2897
175 nmdc:mga05p37_108310_c1 3300050507 Unclassified 3418
176 nmdc:mga09592_13422_c1 3300050508 Bacteria 6166
177 nmdc:mga06r32_73192_c1 3300050510 Bacteria 3319
178 nmdc:mga08y16_2195_c1 3300050511 Bacteria 20025
179 nmdc:mga08y16_46617_c1 3300050511 Bacteria 4538
180 Ga0500644_0000078 3300053088 Bacteria 59447
181 Ga0500646_0007472 3300053090 Bacteria 2795
182 Ga0500583_0006992 3300053092 Bacteria 3933
183 Ga0500562_011933 3300053108 Bacteria 2206
184 Ga0500652_003332 3300053131 Bacteria 4868
185 Ga0500658_0002667 3300053134 Bacteria 6861
186 Ga0500559_0009706 3300053136 Bacteria 4154
187 Ga0500577_0001145 3300053142 Bacteria 6800
188 Ga0500616_0000015 3300053153 Bacteria 633259
189 Ga0500616_0001032 3300053153 Bacteria 29487
190 Ga0500616_0005392 3300053153 Bacteria 8689
191 Ga0500616_0016001 3300053153 Bacteria 4279
192 Ga0500622_0000049 3300053156 Bacteria 145793
193 Ga0500622_0000056 3300053156 Bacteria 142254
194 Ga0500622_0000677 3300053156 Bacteria 30106
195 Ga0500622_0004268 3300053156 Bacteria 9072
196 Ga0500636_0014284 3300053177 Bacteria 4670
197 Ga0500661_009332 3300055283 Bacteria 1798
198 2819571956 2818991442 Bacteria 8318214
199 2819677727 2818991460 Bacteria 7595395
200 2821141800 2821136567 Bacteria 8080116
201 2881956376 2881955468 Bacteria 3545609
202 2883073234 2883068021 Bacteria 6192739
203 2884635866 2884634485 Bacteria 3928637
204 2884797675 2884791551 Bacteria 8511252
205 2896087360 2896085136 Bacteria 6129793
206 2896114688 2896109856 Bacteria 7140722
207 2904469785 2904467357 Bacteria 8057758
208 2919694971 2919692658 Bacteria 5943958
209 2929183279 2929177148 Bacteria 7883697
210 2929245398 2929239360 Bacteria 7745570
211 2929927667 2929921140 Bacteria 8649150
212 2945979239 2945977869 Bacteria 7777518
213 2946014892 2946013367 Bacteria 7766675
214 8003151515 8003151029 Bacteria 8187759
215 Ga0265327_10000137
216 SwRhRL2b_contig_1663676
217 JGI24740J21852_10002480
218 JGI24739J22299_10000963
219 JGI25154J39366_1000020
220 JGI25153J46596_10000815
221 rootH1_10024721
222 rootH1_10072199
223 rootH2_10017766
224 rootH2_10031527
225 rootH2_10132349
226 rootL2_10004973
227 rootL2_10005322
228 rootL2_10035247
229 rootL2_10115235
230 rootL2_10199059
231 rootH1_10009419
232 rootH1_10019082
233 rootH1_10025005
234 rootH1_10043701
235 rootH1_10062118
236 rootH1_10065950
237 rootH1_10095576
238 rootH1_10151766
239 JGI25160J50197_1001636
240 Ga0055535_1001395
241 Ga0055528_1000459
242 Ga0055530_10005845
243 Ga0055530_10020856
244 Ga0055531_10000132
245 Ga0055531_10000206
246 Ga0065165_1000417
247 Ga0065704_10070136
248 Ga0065704_10079205
249 Ga0070659_100007356
250 Ga0070665_100030771
251 Ga0068854_100084239
252 Ga0068856_100034081
253 Ga0068856_100174472
254 Ga0070716_100010900
255 Ga0070716_100065852
256 Ga0075428_100079180
257 Ga0075431_100027626
258 Ga0075429_100027219
259 Ga0105240_10000134
260 Ga0105240_10085467
261 Ga0105240_10175172
262 Ga0111539_10003057
263 Ga0111539_10009197
264 Ga0114129_10073293
265 Ga0105237_10003457
266 Ga0105239_10000200
267 Ga0105239_10023604
268 Ga0105239_10081692
269 Ga0157373_10012757
270 Ga0157370_10059194
271 Ga0157369_10024769
272 Ga0163162_10011844
273 Ga0163162_10035249
274 Ga0157372_10009540
275 Ga0157372_10254016
276 Ga0157380_10001699
277 Ga0157376_10162482
278 Ga0182005_1000116
279 Ga0209436_101172
280 Ga0209436_102399
281 Ga0209258_100075
282 Ga0209646_1000005
283 Ga0209026_1000198
284 Ga0209148_1000085
285 Ga0209673_1000543
286 Ga0209564_1001750
287 Ga0209564_1002023
288 Ga0209758_1001621
289 Ga0209758_1016666
290 Ga0209050_1000359
291 Ga0209050_1001862
292 Ga0207426_1000057
293 Ga0207426_1000262
294 Ga0207426_1003850
295 Ga0207426_1003867
296 Ga0209257_1000004
297 Ga0209257_1000007
298 Ga0209257_1004357
299 Ga0207647_10000347
300 Ga0207695_10000010
301 Ga0207695_10021723
302 Ga0207695_10065232
303 Ga0207671_10000067
304 Ga0207681_10099414
305 Ga0207690_10031555
306 Ga0207665_10050227
307 Ga0207702_10016271
308 Ga0207674_10078499
309 Ga0268266_10007200
310 Ga0307515_10000094
311 Ga0307515_10062179
312 Ga0265338_10056501
313 Ga0265327_10000089
314 Ga0265327_10000370
315 Ga0265327_10035979
316 Ga0307509_10016710
317 Ga0307509_10070114
318 Ga0307509_10119905
319 Ga0307408_100026762
320 Ga0307408_100068013
321 Ga0265314_10076851
322 Ga0316576_10027413
323 Ga0316578_10036288
324 Ga0307516_10001566
325 Ga0307405_10052442
326 Ga0307413_10081842
327 Ga0307406_10115581
328 Ga0307407_10013214
329 Ga0307416_100000513
330 Ga0307414_10000056
331 Ga0307414_10021031
332 Ga0307415_100000558
333 Ga0373927_0014813
334 Ga0316584_0009246
335 Ga0451577_0000618
336 Ga0451577_0002214
337 Ga0451577_0002409
338 Ga0451577_0009797
339 Ga0451577_0011089
340 Ga0451577_0037426
341 Ga0466969_0013327
342 Ga0453683_0000246
343 Ga0453683_0002305
344 Ga0453683_0015319
345 Ga0453683_0019954
346 Ga0466964_0021260
347 Ga0453684_0000259
348 Ga0453684_0002831
349 Ga0453684_0003418
350 Ga0453684_0003784
351 Ga0453684_0004415
352 Ga0453684_0013493
353 Ga0453684_0019446
354 Ga0453684_0025322
355 Ga0453684_0027672
356 Ga0453684_0063573
357 Ga0453684_0092214
358 Ga0453684_0119504
359 Ga0453684_0132074
360 Ga0453684_0179601
361 Ga0453684_0196638
362 Ga0453684_0223023
363 Ga0451576_0000090
364 Ga0451576_0000352
365 Ga0451576_0001968
366 Ga0451576_0027645
367 Ga0451576_0027756
368 Ga0451576_0038161
369 Ga0451576_0074009
370 Ga0451576_0075925
371 Ga0451576_0081488
372 Ga0495638_0000004
373 Ga0495632_0037942
374 Ga0495633_0000022
375 Ga0495668_0000451
376 Ga0495636_0000108
377 Ga0495674_0101027
378 Ga0495680_0147164
379 Ga0495686_0000832
380 Ga0496114_0004347
381 Ga0496121_0000010
382 Ga0501300_000832
383 Ga0501202_000788
384 Ga0501206_000938
385 Ga0501257_002437
386 Ga0501241_000736
387 Ga0501264_000350
388 Ga0501269_001621
389 nmdc:mga05p37_108310_c1
390 nmdc:mga09592_13422_c1
391 nmdc:mga06r32_73192_c1
392 nmdc:mga08y16_2195_c1
393 nmdc:mga08y16_46617_c1
394 Ga0500644_0000078
395 Ga0500646_0007472
396 Ga0500583_0006992
397 Ga0500562_011933
398 Ga0500652_003332
399 Ga0500658_0002667
400 Ga0500559_0009706
401 Ga0500577_0001145
402 Ga0500616_0000015
403 Ga0500616_0001032
404 Ga0500616_0005392
405 Ga0500616_0016001
406 Ga0500622_0000049
407 Ga0500622_0000056
408 Ga0500622_0000677
409 Ga0500622_0004268
410 Ga0500636_0014284
411 Ga0500661_009332
412 2819571956
413 2819677727
414 2821141800
415 2881956376
416 2883073234
417 2884635866
418 2884797675
419 2896087360
420 2896114688
421 2904469785
422 2919694971
423 2929183279
424 2929245398
425 2929927667
426 2945979239
427 2946014892
428 8003151515

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17768

RecJ_OB

RecJ OB domain

562

668

0.92

PF01368

DHH

DHH family

184

336

0.9

PF02272

DHHA1

DHHA1 domain

423

547

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zxp-assembly1.cif.gz_A crystal structure of recj in complex with mn2+ from thermus thermophilus hb8 0.9275 8 571
2zxr-assembly1.cif.gz_A crystal structure of recj in complex with mg2+ from thermus thermophilus hb8 0.9194 8 571
6lrd-assembly1.cif.gz_A structure of recj complexed with a 5'-p-dspacer-modified ssdna 0.9135 4 570
5f56-assembly1.cif.gz_A structure of recj complexed with dna and ssb-ct 0.9058 4 570
5f54-assembly1.cif.gz_A structure of recj complexed with dtmp 0.8952 6 570
ID Description Score Start End Superfamily
af_Q2FXT9_57_316_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9801 59 324 3.90.1640.30
af_Q2FXT9_57_316_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9727 59 324 3.90.1640.30
af_P21893_50_326_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9543 61 324 3.90.1640.30
5f56A02 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.946 66 324 3.90.1640.30
af_P21893_327_456_3.10.310.30 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.9399 328 447 3.10.310.30
ID Description Score Start End GO Terms
AF-X0YLX8-F1-model_v4 DDH domain-containing protein 0.9832 116 262 GO:0004527
AF-A0A660NWL2-F1-model_v4 deleted 0.9827 6 344
AF-A0A3D2II31-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9816 102 234 GO:0004527
AF-A0A522DWQ6-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9789 6 258 GO:0004527
AF-A0A388Q1W9-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9744 142 569 GO:0003676
GO:0004527

Map