F324619

General Info

Members Datasets Scaffolds Average Seq Length
213 183 143 492

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2775506902|2776269063
Length 550
Sequence PKLDLRQTQALVMTPLLMQSIRLLQLTHVELEQFIEQEIEKNPLLERDETYGERFSLDERNPGDDRGSGEAGDFNRVAISGDSDAHEDRPDPNGQNDHWLVSGESTSSGSMSDTFDSSLENIFPDDPGTQDFIAGDLASQWKSSSGDGYVSVGGEGYNLEQVTASPLTLRDHVGEQIIFAFENAADRIIAAELADHLDEMGYLRADVDEVAERLGVDVAHVEKLIAVLQGFEPAGLFARDLAECLALQLHARNRLDPAMKTLLQHLELLAKRDFHTLKKLCHVADADILDMLQEIQLLDPKPGTAFSSGIADSIIPDVQVDVAPDGTWRIELNPDALPRVLVNNSYYATVSKAKVSPAEKTFLSECLQNANWLTRSLDQRAQTILKVASEIVRQQENFLLHGIAHLRPLNLRNVADAIGMHESTVSRVTANKYMLTMRGVFELRYFFNAAISATEGGEQHSSQSVRHQIRQLIDAEAPDDILSDDTIVDLLKEQGVDIARRTVAKYREAMNIASSVQRRREKKAQTSVRKSDGRSGFVRHAGVGFTRVGK

Samples

Sample ID Description Type Environment
1 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
2 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
3 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
4 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
5 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
6 2513237095 Bradyrhizobium diazoefficiens USDA 122 Isolate Nodule
7 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
8 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
9 2534681786 Brucella suis 92/29 Isolate Unclassified
10 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
11 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
12 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
13 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
14 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
15 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
16 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
17 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
18 2643221583 Caulobacter sp. Root655 Isolate Unclassified
19 2643221584 Caulobacter sp. Root656 Isolate Unclassified
20 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
21 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
22 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
23 2751185800 Brucella pituitosa AA2 Isolate Unclassified
24 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
25 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
26 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
27 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
28 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
29 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
30 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
31 2802429603 Bradyrhizobium ottawaense L2 Isolate Nodule
32 2818991435 Caulobacter henricii 536 Isolate Unclassified
33 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
34 2824671348 Bradyrhizobium sp. HAMBI 2125 Isolate Unclassified
35 2824687955 Bradyrhizobium sp. HAMBI 2126 Isolate Unclassified
36 2824696289 Bradyrhizobium sp. HAMBI 2127 Isolate Unclassified
37 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
38 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
39 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
40 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
41 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
42 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
43 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
44 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
45 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
46 2847939898 Bradyrhizobium ottawaense OO99 Isolate Unclassified
47 2849560528 Caulobacter zeae 410 Isolate Unclassified
48 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
49 2851153111 Caulobacter radicis 736 Isolate Unclassified
50 2854911287 Brucella lupini LUP21 Isolate Unclassified
51 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
52 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
53 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
54 2904666416 Bradyrhizobium nanningense CCBAU 51757 Isolate Unclassified
55 2906626472 Bradyrhizobium hipponense aSej3 Isolate Unclassified
56 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
57 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
58 2922393267 Bradyrhizobium sp. WBAH10 Isolate Nodule
59 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
60 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
61 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
62 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
63 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
64 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
65 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
66 3004334049 Mesorhizobium huakuii 583 Isolate Unclassified
67 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
68 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
69 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
70 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
71 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
72 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
73 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
74 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
75 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
76 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
77 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
78 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
79 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
80 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
81 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
82 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
83 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
84 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
85 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
86 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
87 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
88 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
89 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
90 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
91 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
92 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
93 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
95 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
97 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
99 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
106 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
107 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
109 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
110 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
111 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
112 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
113 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
114 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
115 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
116 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
117 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
118 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
119 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
120 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
121 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
122 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
123 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
124 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
125 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
126 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
127 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
128 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
129 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
130 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
131 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
132 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
133 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
134 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
135 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
136 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
137 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
138 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
139 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
140 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
141 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
142 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
143 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
144 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
147 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
148 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
157 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
158 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
162 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
163 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
164 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
165 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
166 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
167 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
168 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
169 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
170 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
171 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
172 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
173 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
174 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
175 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
176 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
177 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
178 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
179 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
180 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
181 8016557553 Bradyrhizobium sp. LM3.4 Isolate Nodule
182 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
183 8054558443 Rhizobium alarense TRM95111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 67.14
Metatranscriptomes 0
Isolates 32.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.07
Nodule 9.86
Rhizoplane 2.35
Rhizosphere 48.83
Stem 0
Stem Tuber 0
Unclassified 16.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055542_1000808 3300003762 Bacteria 23068
2 Ga0055537_1001144 3300003773 Bacteria 11377
3 Ga0055524_1017397 3300003775 Bacteria 2538
4 Ga0055536_1002366 3300003781 Bacteria 10655
5 Ga0055536_1005831 3300003781 Bacteria 5917
6 Ga0055528_1003807 3300003790 Bacteria 7433
7 Ga0055540_1001456 3300003792 Bacteria 14108
8 Ga0055531_10001215 3300003794 Bacteria 19734
9 Ga0055531_10002625 3300003794 Bacteria 11907
10 Ga0065165_1000293 3300005262 Bacteria 84715
11 Ga0065165_1005601 3300005262 Bacteria 6962
12 Ga0070683_100053179 3300005329 Bacteria 3753
13 Ga0070669_100021589 3300005353 Bacteria 4601
14 Ga0070708_100047392 3300005445 Bacteria 3796
15 Ga0070707_100103769 3300005468 Bacteria 2755
16 Ga0068853_100164920 3300005539 Bacteria 2002
17 Ga0068861_100053754 3300005719 Bacteria 3065
18 Ga0068862_100058392 3300005844 Bacteria 3309
19 Ga0081455_10018401 3300005937 Bacteria 6658
20 Ga0081538_10002357 3300005981 Bacteria 18581
21 Ga0081538_10014376 3300005981 Bacteria 6201
22 Ga0075365_10001336 3300006038 Bacteria 11037
23 Ga0075364_10043690 3300006051 Bacteria 2913
24 Ga0075362_10029836 3300006177 Bacteria 2352
25 Ga0075367_10045817 3300006178 Bacteria 2567
26 Ga0075366_10079064 3300006195 Bacteria 1963
27 Ga0111539_10001807 3300009094 Bacteria 28482
28 Ga0114129_10177148 3300009147 Bacteria 2904
29 Ga0105238_10008787 3300009551 Bacteria 10109
30 Ga0209565_1000090 3300025263 Bacteria 146540
31 Ga0209673_1001169 3300025273 Bacteria 28517
32 Ga0209675_1015864 3300025291 Bacteria 2218
33 Ga0209676_1000320 3300025292 Bacteria 93515
34 Ga0209758_1000170 3300025297 Bacteria 149476
35 Ga0209758_1003689 3300025297 Bacteria 13612
36 Ga0209758_1008735 3300025297 Bacteria 6472
37 Ga0209758_1011053 3300025297 Bacteria 5288
38 Ga0209050_1006804 3300025298 Bacteria 6655
39 Ga0209256_1002551 3300025299 Bacteria 14567
40 Ga0209256_1002880 3300025299 Bacteria 13044
41 Ga0209051_1001528 3300025303 Bacteria 19270
42 Ga0209257_1000247 3300025304 Bacteria 125419
43 Ga0209257_1000338 3300025304 Bacteria 97721
44 Ga0207681_10045682 3300025923 Bacteria 2942
45 Ga0207694_10036739 3300025924 Bacteria 3760
46 Ga0207639_10079443 3300026041 Bacteria 2592
47 Ga0207675_100002700 3300026118 Bacteria 17491
48 Ga0209813_10002405 3300027866 Bacteria 4283
49 Ga0207428_10000134 3300027907 Bacteria 99640
50 Ga0268265_10042688 3300028380 Bacteria 3366
51 Ga0265338_10003492 3300028800 Bacteria 22066
52 Ga0265338_10057920 3300028800 Bacteria 3424
53 Ga0307408_100160136 3300031548 Bacteria 1787
54 Ga0265313_10000269 3300031595 Bacteria 56767
55 Ga0265314_10002164 3300031711 Bacteria 20550
56 Ga0373943_0028607 3300035170 Bacteria 2627
57 Ga0373935_0041179 3300035692 Bacteria 2901
58 Ga0373947_0002639 3300035725 Bacteria 10772
59 Ga0373925_0006203 3300037068 Bacteria 8831
60 Ga0373925_0092639 3300037068 Bacteria 2312
61 Ga0395900_0000042 3300037418 Bacteria 242667
62 Ga0395898_0000080 3300037466 Bacteria 242667
63 Ga0395905_0000044 3300037471 Bacteria 242916
64 Ga0395901_0000027 3300038443 Bacteria 244204
65 Ga0453684_0027636 3300044712 Bacteria 8125
66 Ga0495627_000794 3300046453 Bacteria 23094
67 Ga0495629_0051920 3300046459 Bacteria 2869
68 Ga0495638_0000292 3300046460 Bacteria 65766
69 Ga0495638_0011316 3300046460 Bacteria 6149
70 Ga0495650_0000168 3300046471 Bacteria 145714
71 Ga0495580_0001068 3300046472 Bacteria 24085
72 Ga0495583_0000003 3300046506 Bacteria 709273
73 Ga0495610_0003497 3300046512 Bacteria 12216
74 Ga0495610_0006613 3300046512 Bacteria 7921
75 Ga0495616_0000134 3300046513 Bacteria 63981
76 Ga0495632_0027390 3300046519 Bacteria 2986
77 Ga0495637_0005562 3300046520 Bacteria 6396
78 Ga0495654_0000016 3300046530 Bacteria 306416
79 Ga0495654_0000070 3300046530 Bacteria 117357
80 Ga0495668_0008658 3300046616 Bacteria 6324
81 Ga0495634_0059346 3300046642 Bacteria 2548
82 Ga0495625_0000034 3300046660 Bacteria 225120
83 Ga0495625_0004384 3300046660 Bacteria 13387
84 Ga0495625_0054810 3300046660 Bacteria 2846
85 Ga0495589_0002767 3300046794 Bacteria 9699
86 Ga0495600_0086966 3300046809 Bacteria 2039
87 Ga0495672_0000303 3300047320 Bacteria 66366
88 Ga0495679_009460 3300047446 Bacteria 3901
89 Ga0495673_0000053 3300047469 Bacteria 254433
90 Ga0495673_0001147 3300047469 Bacteria 22636
91 Ga0495686_0012815 3300047472 Bacteria 5849
92 Ga0495686_0018733 3300047472 Bacteria 4637
93 Ga0496101_0023667 3300048904 Bacteria 4245
94 Ga0496107_0000400 3300048910 Bacteria 23427
95 Ga0496115_0002527 3300048918 Bacteria 13147
96 Ga0496119_0005715 3300048922 Bacteria 11798
97 Ga0496121_0004973 3300048924 Bacteria 17424
98 Ga0496125_0018737 3300048928 Bacteria 6562
99 Ga0496126_0014624 3300048929 Bacteria 7923
100 Ga0501031_0019313 3300049568 Bacteria 4438
101 Ga0501033_0015980 3300049570 Bacteria 5686
102 Ga0501033_0127969 3300049570 Bacteria 1841
103 Ga0501034_0014538 3300049571 Bacteria 8106
104 Ga0501034_0018709 3300049571 Bacteria 7099
105 Ga0501034_0063797 3300049571 Bacteria 3698
106 Ga0501036_0053630 3300049572 Bacteria 3414
107 Ga0501037_0025299 3300049573 Bacteria 4385
108 Ga0501037_0137152 3300049573 Bacteria 1752
109 Ga0501038_0021507 3300049574 Bacteria 5789
110 Ga0501038_0031820 3300049574 Bacteria 4659
111 Ga0501038_0054239 3300049574 Bacteria 3448
112 Ga0501043_0048543 3300049579 Bacteria 3337
113 Ga0501043_0098387 3300049579 Bacteria 2299
114 Ga0501047_0010466 3300049581 Bacteria 8779
115 Ga0501047_0020547 3300049581 Bacteria 6339
116 Ga0501070_0027540 3300049586 Bacteria 4767
117 Ga0501070_0047721 3300049586 Bacteria 3558
118 Ga0501238_000301 3300049671 Bacteria 6501
119 Ga0501079_0085722 3300049741 Bacteria 2438
120 Ga0501080_0028308 3300049742 Bacteria 5212
121 Ga0501035_0016803 3300049822 Bacteria 6747
122 Ga0501044_0011578 3300049823 Bacteria 9560
123 nmdc:mga00v17_103681_c1 3300050491 Bacteria 1798
124 nmdc:mga0yw44_565_c1 3300050492 Bacteria 13392
125 nmdc:mga0k408_77716_c1 3300050493 Bacteria 1941
126 nmdc:mga0k408_99061_c1 3300050493 Bacteria 1718
127 nmdc:mga05p37_183839_c1 3300050507 Bacteria 2542
128 nmdc:mga0qj67_207804_c1 3300050509 Bacteria 1590
129 nmdc:mga08y16_30_c1 3300050511 Bacteria 197110
130 nmdc:mga0sz30_34457_c1 3300050516 Bacteria 2108
131 Ga0495601_0009465 3300053077 Bacteria 5765
132 Ga0500647_0098939 3300053091 Bacteria 1393
133 Ga0500556_0001775 3300053104 Bacteria 8053
134 Ga0500607_047275 3300053121 Bacteria 2303
135 Ga0500652_000198 3300053131 Bacteria 23141
136 Ga0500559_0000009 3300053136 Bacteria 174153
137 Ga0500559_0002555 3300053136 Bacteria 9338
138 Ga0500573_0013354 3300053140 Bacteria 4626
139 Ga0500573_0073888 3300053140 Bacteria 1942
140 Ga0500616_0050101 3300053153 Bacteria 2207
141 Ga0500627_0000440 3300053158 Bacteria 11268
142 Ga0500637_0000637 3300053178 Bacteria 13893
143 Ga0530510_0179309 3300061734 Bacteria 1571

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 8016557553 8016557787 419
2 3300006178 Ga0075367_10045817 Ga0075367_100458172 423
3 3300027866 Ga0209813_10002405 Ga0209813_100024053 423
4 3300049568 Ga0501031_0019313 Ga0501031_0019313_3071_4408 424
5 3300050493 nmdc:mga0k408_77716_c1 nmdc:mga0k408_77716_c1_599_1930 424
6 3300053091 Ga0500647_0098939 Ga0500647_0098939_46_1377 424
7 3300053121 Ga0500607_047275 Ga0500607_047275_947_2278 424
8 3300050491 nmdc:mga00v17_103681_c1 nmdc:mga00v17_103681_c1_86_1681 439
9 3300050516 nmdc:mga0sz30_34457_c1 nmdc:mga0sz30_34457_c1_177_1772 439
10 iso_pu_bacteria 2802429603 2805922761 441
11 3300005329 Ga0070683_100053179 Ga0070683_1000531792 443
12 3300005539 Ga0068853_100164920 Ga0068853_1001649201 443
13 3300025924 Ga0207694_10036739 Ga0207694_100367392 443
14 3300026041 Ga0207639_10079443 Ga0207639_100794432 443
15 3300009551 Ga0105238_10008787 Ga0105238_100087879 444
16 3300005445 Ga0070708_100047392 Ga0070708_1000473922 446
17 3300005468 Ga0070707_100103769 Ga0070707_1001037692 446
18 3300006051 Ga0075364_10043690 Ga0075364_100436902 448
19 3300031711 Ga0265314_10002164 Ga0265314_1000216412 448
20 3300046453 Ga0495627_000794 Ga0495627_000794_10299_11792 450
21 3300053136 Ga0500559_0002555 Ga0500559_0002555_1914_3401 450
22 iso_pu_bacteria 2904666416 2904672548 450
23 3300047469 Ga0495673_0000053 Ga0495673_0000053_22083_23576 451
24 3300003773 Ga0055537_1001144 Ga0055537_10011442 453
25 3300003790 Ga0055528_1003807 Ga0055528_10038071 453
26 3300025263 Ga0209565_1000090 Ga0209565_100009080 453
27 3300025273 Ga0209673_1001169 Ga0209673_100116916 453
28 3300025291 Ga0209675_1015864 Ga0209675_10158641 453
29 3300025297 Ga0209758_1003689 Ga0209758_100368913 453
30 3300046513 Ga0495616_0000134 Ga0495616_0000134_9444_10928 453
31 3300046660 Ga0495625_0004384 Ga0495625_0004384_3743_5233 453
32 3300047472 Ga0495686_0018733 Ga0495686_0018733_2218_3720 453
33 3300046794 Ga0495589_0002767 Ga0495589_0002767_4182_5687 454
34 3300046512 Ga0495610_0003497 Ga0495610_0003497_829_2328 455
35 3300046512 Ga0495610_0006613 Ga0495610_0006613_1932_3425 455
36 3300046616 Ga0495668_0008658 Ga0495668_0008658_149_1642 455
37 3300046660 Ga0495625_0054810 Ga0495625_0054810_105_1604 455
38 3300047446 Ga0495679_009460 Ga0495679_009460_2000_3493 455
39 3300049671 Ga0501238_000301 Ga0501238_000301_2877_4361 455
40 3300005262 Ga0065165_1000293 Ga0065165_100029314 456
41 3300028800 Ga0265338_10057920 Ga0265338_100579202 456
42 3300046460 Ga0495638_0011316 Ga0495638_0011316_3523_5013 456
43 3300049741 Ga0501079_0085722 Ga0501079_0085722_839_2308 457
44 3300035170 Ga0373943_0028607 Ga0373943_0028607_872_2392 458
45 3300035692 Ga0373935_0041179 Ga0373935_0041179_1163_2683 458
46 3300035725 Ga0373947_0002639 Ga0373947_0002639_6791_8311 458
47 3300046471 Ga0495650_0000168 Ga0495650_0000168_122990_124480 458
48 3300046530 Ga0495654_0000016 Ga0495654_0000016_13880_15370 458
49 3300046809 Ga0495600_0086966 Ga0495600_0086966_424_1929 458
50 3300053158 Ga0500627_0000440 Ga0500627_0000440_1817_3307 458
51 3300046520 Ga0495637_0005562 Ga0495637_0005562_1977_3467 460
52 3300048904 Ga0496101_0023667 Ga0496101_0023667_420_1955 460
53 3300053104 Ga0500556_0001775 Ga0500556_0001775_4601_6091 460
54 3300046660 Ga0495625_0000034 Ga0495625_0000034_128926_130410 462
55 3300061734 Ga0530510_0179309 Ga0530510_0179309_45_1526 462
56 3300028800 Ga0265338_10003492 Ga0265338_100034927 463
57 3300046642 Ga0495634_0059346 Ga0495634_0059346_243_1763 463
58 3300048910 Ga0496107_0000400 Ga0496107_0000400_8392_9870 463
59 3300048924 Ga0496121_0004973 Ga0496121_0004973_13589_15067 463
60 3300031548 Ga0307408_100160136 Ga0307408_1001601361 464
61 3300046519 Ga0495632_0027390 Ga0495632_0027390_253_1737 466
62 3300053077 Ga0495601_0009465 Ga0495601_0009465_1273_2787 466
63 iso_pu_bacteria 2824671348 2824671669 466
64 iso_pu_bacteria 2824687955 2824688277 466
65 iso_pu_bacteria 2824696289 2824696368 466
66 iso_pu_bacteria 2847939898 2847940738 466
67 iso_pu_bacteria 2922393267 2922399648 466
68 iso_pu_bacteria 2929615660 2929623986 466
69 iso_pu_bacteria 2929624759 2929633372 466
70 3300003794 Ga0055531_10001215 Ga0055531_1000121511 467
71 3300025297 Ga0209758_1011053 Ga0209758_10110533 467
72 3300025304 Ga0209257_1000247 Ga0209257_100024710 467
73 3300050507 nmdc:mga05p37_183839_c1 nmdc:mga05p37_183839_c1_373_1845 467
74 3300050509 nmdc:mga0qj67_207804_c1 nmdc:mga0qj67_207804_c1_45_1517 467
75 3300053178 Ga0500637_0000637 Ga0500637_0000637_964_2463 467
76 3300048918 Ga0496115_0002527 Ga0496115_0002527_9469_10971 468
77 3300053136 Ga0500559_0000009 Ga0500559_0000009_25197_26675 468
78 iso_pu_bacteria 8046767195 8046774097 468
79 3300037068 Ga0373925_0006203 Ga0373925_0006203_1725_3245 469
80 3300047472 Ga0495686_0012815 Ga0495686_0012815_3031_4536 469
81 iso_pu_bacteria 2524023209 2524463070 469
82 iso_pu_bacteria 2615840626 2616311950 469
83 iso_pu_bacteria 2775507266 2778178754 469
84 iso_pu_bacteria 2838029111 2838034945 469
85 iso_pu_bacteria 2842357229 2842362900 469
86 iso_pu_bacteria 2842475841 2842481691 469
87 iso_pu_bacteria 2842482326 2842488767 469
88 iso_pu_bacteria 2842502639 2842508484 469
89 3300053131 Ga0500652_000198 Ga0500652_000198_7609_9222 470
90 iso_pu_bacteria 2513237095 2513653040 470
91 3300046460 Ga0495638_0000292 Ga0495638_0000292_56048_57544 471
92 3300047320 Ga0495672_0000303 Ga0495672_0000303_13805_15307 471
93 3300047469 Ga0495673_0001147 Ga0495673_0001147_9650_11137 471
94 3300049570 Ga0501033_0015980 Ga0501033_0015980_840_2369 471
95 3300049571 Ga0501034_0018709 Ga0501034_0018709_2507_4036 471
96 3300049572 Ga0501036_0053630 Ga0501036_0053630_1048_2577 471
97 3300049574 Ga0501038_0021507 Ga0501038_0021507_4242_5771 471
98 3300049579 Ga0501043_0048543 Ga0501043_0048543_343_1872 471
99 3300049581 Ga0501047_0020547 Ga0501047_0020547_2992_4521 471
100 3300049586 Ga0501070_0047721 Ga0501070_0047721_902_2431 471
101 3300049822 Ga0501035_0016803 Ga0501035_0016803_667_2196 471
102 iso_pu_bacteria 2510917020 2511120322 471
103 iso_pu_bacteria 2643221583 2643922407 471
104 3300031595 Ga0265313_10000269 Ga0265313_1000026933 472
105 3300044712 Ga0453684_0027636 Ga0453684_0027636_171_1682 472
106 3300046506 Ga0495583_0000003 Ga0495583_0000003_592160_593659 472
107 3300050493 nmdc:mga0k408_99061_c1 nmdc:mga0k408_99061_c1_153_1643 472
108 iso_pu_bacteria 2582581280 2585151102 473
109 iso_pu_bacteria 2582581293 2585196238 473
110 iso_pu_bacteria 2643221552 2643779977 473
111 iso_pu_bacteria 2643221584 2643932031 473
112 iso_pu_bacteria 2643221691 2644507074 473
113 iso_pu_bacteria 2791355048 2792458639 473
114 iso_pu_bacteria 2818991435 2819538192 473
115 iso_pu_bacteria 2818991454 2819647238 473
116 iso_pu_bacteria 2843744320 2843745686 473
117 iso_pu_bacteria 2849560528 2849561317 473
118 iso_pu_bacteria 2849573788 2849577312 473
119 iso_pu_bacteria 2851153111 2851157348 473
120 iso_pu_bacteria 2898329390 2898333005 473
121 3300003781 Ga0055536_1005831 Ga0055536_10058313 475
122 3300003794 Ga0055531_10002625 Ga0055531_100026257 475
123 3300025292 Ga0209676_1000320 Ga0209676_10003203 475
124 3300025298 Ga0209050_1006804 Ga0209050_10068043 475
125 3300025299 Ga0209256_1002551 Ga0209256_10025516 475
126 3300025304 Ga0209257_1000338 Ga0209257_10003383 475
127 3300048928 Ga0496125_0018737 Ga0496125_0018737_1691_3190 475
128 iso_pu_bacteria 2643221545 2643750185 475
129 3300049571 Ga0501034_0014538 Ga0501034_0014538_3427_4959 476
130 3300049573 Ga0501037_0025299 Ga0501037_0025299_2107_3639 476
131 3300049574 Ga0501038_0031820 Ga0501038_0031820_1898_3430 476
132 3300003775 Ga0055524_1017397 Ga0055524_10173971 477
133 3300025299 Ga0209256_1002880 Ga0209256_100288011 477
134 3300006195 Ga0075366_10079064 Ga0075366_100790642 478
135 3300049573 Ga0501037_0137152 Ga0501037_0137152_193_1722 478
136 3300049574 Ga0501038_0054239 Ga0501038_0054239_332_1861 478
137 3300049581 Ga0501047_0010466 Ga0501047_0010466_5999_7528 478
138 3300049586 Ga0501070_0027540 Ga0501070_0027540_2600_4129 478
139 3300049742 Ga0501080_0028308 Ga0501080_0028308_944_2473 478
140 3300049823 Ga0501044_0011578 Ga0501044_0011578_4332_5861 478
141 iso_pu_bacteria 2524023207 2524453953 480
142 3300003781 Ga0055536_1002366 Ga0055536_100236610 481
143 3300003792 Ga0055540_1001456 Ga0055540_10014569 481
144 3300005937 Ga0081455_10018401 Ga0081455_100184015 481
145 3300005981 Ga0081538_10014376 Ga0081538_100143763 481
146 3300005353 Ga0070669_100021589 Ga0070669_1000215895 483
147 3300005719 Ga0068861_100053754 Ga0068861_1000537542 483
148 3300005844 Ga0068862_100058392 Ga0068862_1000583923 483
149 3300005981 Ga0081538_10002357 Ga0081538_100023577 483
150 3300006177 Ga0075362_10029836 Ga0075362_100298362 483
151 3300009094 Ga0111539_10001807 Ga0111539_1000180722 483
152 3300009147 Ga0114129_10177148 Ga0114129_101771483 483
153 3300025923 Ga0207681_10045682 Ga0207681_100456823 483
154 3300026118 Ga0207675_100002700 Ga0207675_10000270011 483
155 3300027907 Ga0207428_10000134 Ga0207428_1000013415 483
156 3300028380 Ga0268265_10042688 Ga0268265_100426882 483
157 3300037068 Ga0373925_0092639 Ga0373925_0092639_502_2019 483
158 3300046459 Ga0495629_0051920 Ga0495629_0051920_413_1930 483
159 3300046472 Ga0495580_0001068 Ga0495580_0001068_3258_4775 483
160 3300050511 nmdc:mga08y16_30_c1 nmdc:mga08y16_30_c1_42816_44336 483
161 iso_pu_bacteria 2840764183 2840766786 484
162 3300053153 Ga0500616_0050101 Ga0500616_0050101_595_2196 485
163 iso_pu_bacteria 2767802442 2770197861 486
164 3300049570 Ga0501033_0127969 Ga0501033_0127969_61_1623 488
165 iso_pu_bacteria 2906626472 2906633388 488
166 iso_pu_bacteria 2534681786 2535483947 489
167 iso_pu_bacteria 2509276021 2509391612 490
168 3300006038 Ga0075365_10001336 Ga0075365_100013369 491
169 3300050492 nmdc:mga0yw44_565_c1 nmdc:mga0yw44_565_c1_7204_8775 491
170 iso_pu_bacteria 2558860983 2561466647 491
171 iso_pu_bacteria 2885374607 2885379166 491
172 iso_pu_bacteria 2989349275 2989351765 491
173 iso_pu_bacteria 8054558443 8054563284 491
174 iso_pu_bacteria 2513237084 2513572688 492
175 iso_pu_bacteria 2724679232 2725945953 492
176 iso_pu_bacteria 2936367885 2936374066 492
177 iso_pu_bacteria 8005658619 8005662674 492
178 3300025297 Ga0209758_1008735 Ga0209758_10087354 494
179 3300049579 Ga0501043_0098387 Ga0501043_0098387_220_1788 495
180 iso_pu_bacteria 2513237085 2513581090 495
181 iso_pu_bacteria 2582581304 2585256185 496
182 iso_pu_bacteria 2758568016 2758640733 496
183 iso_pu_bacteria 2854911287 2854914030 496
184 3300005262 Ga0065165_1005601 Ga0065165_10056016 497
185 3300025297 Ga0209758_1000170 Ga0209758_1000170106 497
186 3300025303 Ga0209051_1001528 Ga0209051_100152816 497
187 iso_pu_bacteria 2751185800 2753358503 497
188 iso_pu_bacteria 2757320392 2757571536 497
189 iso_pu_bacteria 2915650412 2915650881 497
190 3300048929 Ga0496126_0014624 Ga0496126_0014624_889_2454 498
191 iso_pu_bacteria 2894652903 2894653291 498
192 3300049571 Ga0501034_0063797 Ga0501034_0063797_569_2212 499
193 3300046530 Ga0495654_0000070 Ga0495654_0000070_12348_13886 500
194 iso_pu_bacteria 2582581299 2585229543 500
195 iso_pu_bacteria 2643221643 2644237458 500
196 3300048922 Ga0496119_0005715 Ga0496119_0005715_6628_8157 501
197 iso_pu_bacteria 2839993093 2839993759 501
198 iso_pu_bacteria 2919119836 2919120801 501
199 iso_pu_bacteria 2511231027 2511391704 502
200 iso_pu_bacteria 2775506902 2776269063 502
201 iso_pu_bacteria 2775506904 2776283798 502
202 iso_pu_bacteria 2842871566 2842875291 502
203 iso_pu_bacteria 2928521798 2928522326 502
204 iso_pu_bacteria 2954011201 2954014252 502
205 iso_pu_bacteria 3002141150 3002142184 502
206 3300053140 Ga0500573_0013354 Ga0500573_0013354_2680_4284 504
207 3300053140 Ga0500573_0073888 Ga0500573_0073888_326_1921 504
208 iso_pu_bacteria 3004334049 3004335941 504
209 3300037418 Ga0395900_0000042 Ga0395900_0000042_65177_66703 506
210 3300037466 Ga0395898_0000080 Ga0395898_0000080_65177_66703 506
211 3300037471 Ga0395905_0000044 Ga0395905_0000044_176214_177740 506
212 3300038443 Ga0395901_0000027 Ga0395901_0000027_176180_177706 506
213 3300003762 Ga0055542_1000808 Ga0055542_100080818 508

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04552

Sigma54_DBD

Sigma-54, DNA binding domain

360

520

0.98

PF00309

Sigma54_AID

Sigma-54 factor, Activator interacting domain (AID)

2

47

0.97

PF04963

Sigma54_CBD

Sigma-54 factor, core binding domain

158

346

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ere-assembly1.cif.gz_D crystal structure of the arginine repressor protein from mycobacterium tuberculosis in complex with the dna operator 0.888 442 487
2p5l-assembly2.cif.gz_H crystal structure of a dimer of n-terminal domains of ahrc in complex with an 18bp dna operator site 0.8829 443 489
2o9l-assembly1.cif.gz_A amber refined nmr structure of the sigma-54 rpon domain bound to the-24 promoter element 0.8766 439 497
2o9l-assembly1.cif.gz_A amber refined nmr structure of the sigma-54 rpon domain bound to the-24 promoter element 0.8156 439 497
2ahq-assembly1.cif.gz_A solution structure of the c-terminal rpon domain of sigma-54 from aquifex aeolicus 0.7783 432 486
ID Description Score Start End Superfamily
2p5lH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8829 443 489 1.10.10.10
2o9lA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8796 444 497 1.10.10.60
2p5lC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8739 443 489 1.10.10.10
5ui5V04 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8536 430 497 1.10.10.60
4a12C01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8483 441 508 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4Q0S3Q9-F1-model_v4 RNA polymerase sigma54 factor 0.9935 338 498 GO:0001216
GO:0016987
AF-A0A529XBV5-F1-model_v4 deleted 0.9932 332 508
AF-A0A844S7D1-F1-model_v4 deleted 0.9905 301 506
AF-A0A4Q5PXF5-F1-model_v4 RNA polymerase sigma-54 factor 0.9905 356 507 GO:0001216
GO:0016987
AF-A0A4Q3HB04-F1-model_v4 RNA polymerase sigma-54 factor 0.9876 369 507 GO:0001216
GO:0016987

Feature Viewer

pLDDT pTM Quality
77.48 0.55 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map