F323472

General Info

Members Datasets Scaffolds Average Seq Length
212 142 424 555

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2808606366|2808876426
Length 594
Sequence PNDEVDFRRTVDVLDGGRAHAPKTALPTGDKGNQGNHTPRLRPHPTDHVQPQPKSAGHVIVDSLAAHGIERTYVVPGESFLDVLDGLHNSDIETIVCRHEGGAAYMAEADGKMQQRPGVAMVTRGPGAANAHVGLHTAWQDSTPLLLFVGLIPFAHRDREAFQEFDIKSWFDTGAKRVMVLDHAERASEIVAEAMFAAMSGRPGPVVVGLPEDVLRQHINPTLHPVIPVAAGGMGGSDSAALKAALAGSSKPLFVTGGNDWTQEAADQLTAWLERHNIPAAAEWRTQGTVSFDSPSYVGPIGYGRPRPTYDLLEETDLLVFVGTVPGDVITDGFVCRQDWDKKNFLVTVDPSLRGRSGPVSRQILAKPEAFVRDLEEIRLPVKDEWKAWTTRMRAEQEKFAALPPAAPAPGRARMDTLMANLVPRLSEDSVVTFGAGEHTNWAHRYFPTRRYASMLSARNGSMGYSVPSAIAASLADPARRVVTIAGDGEFLMNGQELATAAQYGATPLVVVMDNREYGTIRTHQERHYPQRISGTQLKNPNFALMAKAFGGFGITVTADWEVPAALNAAMEAIDRDGVFALIHLLVEQRVKAY

Samples

Sample ID Description Type Environment
1 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
10 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
11 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
12 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
13 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
14 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
15 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
16 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
17 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
18 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
19 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
20 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
36 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
37 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
38 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
39 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
40 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
41 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
42 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
47 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
48 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
49 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
50 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
51 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
54 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
55 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
56 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
57 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
58 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
59 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
60 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
61 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
62 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
63 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
64 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
65 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
66 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
67 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
68 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
71 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
72 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
73 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
74 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
75 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
76 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
77 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
82 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
83 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
84 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
85 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
86 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
87 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
95 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
96 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
97 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
98 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
99 2643221546 Microbacterium sp. Root53 Isolate Unclassified
100 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
101 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
102 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
103 2739367653 Kocuria sp. OV113 Isolate Unclassified
104 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
105 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
106 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
107 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
108 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
109 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
110 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
111 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
112 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
113 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
114 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
115 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
116 2857727296 Kocuria sp. R-72562 Isolate Unclassified
117 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
118 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
119 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
120 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
121 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
122 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
123 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
124 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
125 2920879853 Kocuria salina CV6 Isolate Unclassified
126 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
127 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
128 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
129 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
130 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
131 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
132 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
133 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
134 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
135 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
136 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
137 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
138 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
139 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
140 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
141 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
142 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.11
Metatranscriptomes 0
Isolates 26.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.83
Nodule 0
Rhizoplane 7.08
Rhizosphere 73.58
Stem 0
Stem Tuber 0
Unclassified 0.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000166 3300002773 Bacteria 45163
2 JGI25152J39213_1000447 3300002773 Bacteria 24454
3 Ga0065714_10080921 3300005288 Bacteria 2408
4 Ga0070676_10001857 3300005328 Bacteria 10758
5 Ga0070676_10064825 3300005328 Bacteria 2179
6 Ga0070666_10029852 3300005335 Bacteria 3587
7 Ga0070669_100010732 3300005353 Bacteria 6500
8 Ga0070675_100012523 3300005354 Bacteria 6649
9 Ga0070667_100040120 3300005367 Bacteria 3925
10 Ga0070678_100029241 3300005456 Bacteria 3771
11 Ga0105251_10015859 3300009011 Bacteria 4099
12 Ga0105251_10037209 3300009011 Bacteria 2390
13 Ga0105244_10003278 3300009036 Bacteria 11655
14 Ga0105244_10017564 3300009036 Bacteria 4039
15 Ga0105245_10035533 3300009098 Bacteria 4423
16 Ga0105243_10091992 3300009148 Bacteria 2499
17 Ga0105238_10148528 3300009551 Bacteria 2320
18 Ga0105246_10000888 3300011119 Bacteria 17168
19 Ga0105246_10036112 3300011119 Bacteria 3309
20 Ga0157371_10032185 3300013102 Bacteria 3775
21 Ga0157370_10012123 3300013104 Bacteria 8966
22 Ga0207425_1003092 3300025245 Bacteria 5500
23 Ga0209129_1000159 3300025258 Bacteria 103426
24 Ga0209025_1000211 3300025294 Bacteria 139109
25 Ga0209025_1002281 3300025294 Bacteria 20916
26 Ga0207655_1000544 3300025728 Bacteria 47533
27 Ga0207655_1003537 3300025728 Bacteria 11573
28 Ga0207655_1017637 3300025728 Bacteria 3839
29 Ga0207655_1025749 3300025728 Bacteria 2847
30 Ga0207645_10001051 3300025907 Bacteria 22851
31 Ga0207645_10007571 3300025907 Bacteria 7656
32 Ga0207681_10055815 3300025923 Bacteria 2692
33 Ga0207650_10017200 3300025925 Bacteria 5061
34 Ga0207659_10007512 3300025926 Bacteria 6708
35 Ga0207706_10056769 3300025933 Bacteria 3451
36 Ga0207669_10013591 3300025937 Bacteria 4050
37 Ga0207669_10041850 3300025937 Bacteria 2670
38 Ga0207691_10012886 3300025940 Bacteria 8005
39 Ga0207651_10038260 3300025960 Bacteria 3151
40 Ga0207658_10078274 3300025986 Bacteria 2526
41 Ga0207677_10041759 3300026023 Bacteria 3035
42 Ga0207675_100034058 3300026118 Bacteria 4747
43 Ga0207683_10006658 3300026121 Bacteria 9883
44 Ga0207428_10006099 3300027907 Bacteria 11142
45 Ga0207428_10052403 3300027907 Bacteria 3259
46 Ga0307515_10138081 3300028794 Bacteria 2634
47 Ga0307513_10015597 3300031456 Bacteria 9202
48 Ga0307408_100008458 3300031548 Bacteria 6795
49 Ga0307408_100011596 3300031548 Bacteria 5826
50 Ga0307408_100030962 3300031548 Bacteria 3720
51 Ga0307408_100032751 3300031548 Bacteria 3626
52 Ga0307408_100033913 3300031548 Bacteria 3570
53 Ga0307408_100094765 3300031548 Bacteria 2261
54 Ga0307514_10009902 3300031649 Bacteria 7984
55 Ga0265342_10017701 3300031712 Bacteria 4629
56 Ga0307516_10000067 3300031730 Bacteria 111575
57 Ga0307405_10012378 3300031731 Bacteria 4513
58 Ga0307405_10014304 3300031731 Bacteria 4262
59 Ga0307405_10024891 3300031731 Bacteria 3428
60 Ga0307405_10033077 3300031731 Bacteria 3063
61 Ga0307413_10043499 3300031824 Bacteria 2647
62 Ga0307413_10044059 3300031824 Bacteria 2634
63 Ga0307410_10002024 3300031852 Bacteria 9560
64 Ga0307410_10005030 3300031852 Bacteria 6943
65 Ga0307410_10073372 3300031852 Bacteria 2379
66 Ga0307407_10017022 3300031903 Bacteria 3635
67 Ga0307407_10088615 3300031903 Bacteria 1891
68 Ga0307407_10090920 3300031903 Bacteria 1870
69 Ga0307412_10003191 3300031911 Bacteria 9107
70 Ga0307412_10006510 3300031911 Bacteria 6608
71 Ga0307412_10016130 3300031911 Bacteria 4442
72 Ga0307412_10022451 3300031911 Bacteria 3868
73 Ga0307412_10039937 3300031911 Bacteria 3033
74 Ga0307412_10054399 3300031911 Bacteria 2657
75 Ga0307412_10086972 3300031911 Bacteria 2177
76 Ga0307409_100028200 3300031995 Bacteria 3995
77 Ga0307409_100056987 3300031995 Bacteria 3024
78 Ga0307416_100062089 3300032002 Bacteria 3053
79 Ga0307416_100084101 3300032002 Bacteria 2702
80 Ga0307416_100158426 3300032002 Bacteria 2088
81 Ga0307414_10051619 3300032004 Bacteria 2856
82 Ga0307414_10070251 3300032004 Bacteria 2521
83 Ga0307414_10091627 3300032004 Bacteria 2260
84 Ga0307411_10124999 3300032005 Bacteria 1869
85 Ga0395899_0003233 3300037312 Bacteria 12926
86 Ga0395899_0018372 3300037312 Bacteria 5315
87 Ga0395899_0040986 3300037312 Bacteria 3461
88 Ga0395899_0053841 3300037312 Unclassified 2979
89 Ga0395900_0052409 3300037418 Bacteria 4200
90 Ga0395900_0113929 3300037418 Bacteria 2775
91 Ga0395900_0163915 3300037418 Bacteria 2266
92 Ga0395898_0000960 3300037466 Bacteria 45916
93 Ga0395898_0015696 3300037466 Bacteria 7761
94 Ga0395898_0022883 3300037466 Bacteria 6320
95 Ga0395898_0069299 3300037466 Bacteria 3412
96 Ga0395898_0132932 3300037466 Bacteria 2382
97 Ga0395901_0003969 3300038443 Bacteria 14874
98 Ga0395901_0048574 3300038443 Bacteria 4407
99 Ga0395901_0152021 3300038443 Bacteria 2432
100 Ga0439442_001837 3300042002 Bacteria 4153
101 Ga0439449_0000390 3300042007 Bacteria 16252
102 Ga0439449_0001574 3300042007 Bacteria 8948
103 Ga0439457_006430 3300042014 Bacteria 2880
104 Ga0439457_008151 3300042014 Bacteria 2479
105 Ga0439462_0009906 3300042015 Bacteria 2412
106 Ga0450920_000552 3300042122 Bacteria 5935
107 Ga0450920_005866 3300042122 Bacteria 2194
108 Ga0450907_000263 3300042146 Bacteria 17834
109 Ga0439434_0003011 3300042435 Bacteria 4936
110 Ga0439434_0006847 3300042435 Bacteria 3330
111 Ga0439434_0011918 3300042435 Bacteria 2570
112 Ga0450918_000361 3300042531 Bacteria 9984
113 Ga0466972_0002184 3300044658 Bacteria 9598
114 Ga0466965_0026982 3300044683 Bacteria 2786
115 Ga0466970_0000873 3300044765 Bacteria 14544
116 Ga0466960_0000083 3300044901 Bacteria 31446
117 Ga0466960_0045732 3300044901 Bacteria 2092
118 Ga0466967_0052362 3300045976 Bacteria 3583
119 Ga0466967_0193122 3300045976 Bacteria 1925
120 Ga0495653_0020720 3300046463 Bacteria 5325
121 Ga0495664_0009242 3300046477 Bacteria 5511
122 Ga0495630_0087709 3300046517 Bacteria 2350
123 Ga0495586_0064135 3300046535 Bacteria 2002
124 Ga0495587_0003374 3300046536 Bacteria 10647
125 Ga0495656_0059272 3300046615 Bacteria 1665
126 Ga0495588_0017186 3300046674 Bacteria 3507
127 Ga0495588_0060111 3300046674 Bacteria 1967
128 Ga0495657_0063915 3300046675 Bacteria 2426
129 Ga0495623_0057715 3300046679 Bacteria 2442
130 Ga0495581_0000905 3300047315 Bacteria 15900
131 Ga0496100_0025055 3300048903 Bacteria 3644
132 Ga0496101_0013834 3300048904 Bacteria 5416
133 Ga0496101_0085096 3300048904 Bacteria 2342
134 Ga0496102_0015533 3300048905 Bacteria 6633
135 Ga0496102_0020184 3300048905 Bacteria 5884
136 Ga0496102_0027710 3300048905 Bacteria 5059
137 Ga0496103_0005918 3300048906 Bacteria 7309
138 Ga0496103_0024952 3300048906 Bacteria 3609
139 Ga0496104_0022013 3300048907 Bacteria 5856
140 Ga0496106_0014134 3300048909 Bacteria 5897
141 Ga0496110_0010677 3300048913 Bacteria 7478
142 Ga0496111_0052251 3300048914 Bacteria 2950
143 Ga0496112_0094706 3300048915 Bacteria 2957
144 Ga0496114_0019171 3300048917 Bacteria 5542
145 Ga0496114_0217087 3300048917 Bacteria 1678
146 Ga0496117_0000071 3300048920 Bacteria 242170
147 Ga0496124_0062053 3300048927 Bacteria 3130
148 Ga0496126_0001762 3300048929 Bacteria 32014
149 Ga0501032_0000351 3300049569 Bacteria 38446
150 Ga0501033_0055933 3300049570 Bacteria 2917
151 Ga0501034_0000001 3300049571 Bacteria 2184493
152 Ga0501034_0000057 3300049571 Bacteria 202455
153 Ga0501037_0036066 3300049573 Bacteria 3645
154 Ga0501039_0000033 3300049575 Bacteria 128868
155 Ga0495655_0000784 3300053083 Bacteria 4991
156 2808876426 2808606366 Bacteria 4415912
157 2537899171 2537561592 Bacteria 4348607
158 2537900992 2537561592 Bacteria 4348607
159 2555228791 2554235227 Bacteria 3637389
160 2555230110 2554235227 Bacteria 3637389
161 2558909129 2558860112 Bacteria 9931328
162 2643752487 2643221546 Bacteria 2910897
163 2655031066 2654587600 Bacteria 3911798
164 2691512636 2690315906 Bacteria 4517044
165 2729909367 2728369276 Bacteria 5610032
166 2739603547 2739367653 Bacteria 2780952
167 2739604117 2739367653 Bacteria 2780952
168 2775657604 2775506735 Bacteria 4556596
169 2808829879 2808606357 Bacteria 4466944
170 2808851056 2808606360 Bacteria 4404006
171 2808894160 2808606370 Bacteria 4942454
172 2808897947 2808606371 Bacteria 4251511
173 2812318422 2811994871 Bacteria 4497550
174 2816507613 2816332139 Bacteria 9138787
175 2817507913 2816332305 Bacteria 2697803
176 2817509872 2816332305 Bacteria 2697803
177 2844851522 2844849076 Bacteria 4091819
178 2857479826 2857479173 Bacteria 2469263
179 2857634899 2857632687 Bacteria 2448521
180 2857710723 2857710386 Bacteria 3186771
181 2857711393 2857710386 Bacteria 3186771
182 2857727539 2857727296 Bacteria 2745552
183 2857728010 2857727296 Bacteria 2745552
184 2870804004 2870801768 Bacteria 2710986
185 2870805889 2870804320 Bacteria 2552467
186 2904780497 2904776348 Bacteria 4658726
187 2906799953 2906799679 Bacteria 4031749
188 2919053679 2919051321 Bacteria 4210889
189 2919054980 2919051321 Bacteria 4210889
190 2919063203 2919059106 Bacteria 4991624
191 2919393705 2919391150 Bacteria 4884741
192 2919539532 2919538618 Bacteria 4677069
193 2920880392 2920879853 Bacteria 4216831
194 2933420301 2933418574 Bacteria 4476724
195 2939600359 2939598168 Bacteria 4687164
196 2939647252 2939647034 Bacteria 4681660
197 2939674792 2939674588 Bacteria 4844420
198 2945916172 2945916053 Bacteria 4555517
199 2945923719 2945920336 Bacteria 4501603
200 2945943512 2945941187 Bacteria 4682474
201 2945959240 2945956166 Bacteria 5110334
202 2946037077 2946037020 Bacteria 4900426
203 2946039183 2946037020 Bacteria 4900426
204 2946040535 2946037020 Bacteria 4900426
205 2946059983 2946059875 Bacteria 4386623
206 2954001795 2953998280 Bacteria 4812144
207 2974305419 2974302888 Bacteria 4369871
208 2995726498 2995726249 Bacteria 3470435
209 8025535009 8025530807 Bacteria 8495698
210 8054473921 8054472261 Bacteria 7464355
211 8055034723 8055034563 Bacteria 3562128
212 8055226981 8055225921 Bacteria 3341787
213 JGI25152J39213_1000166
214 JGI25152J39213_1000447
215 Ga0065714_10080921
216 Ga0070676_10001857
217 Ga0070676_10064825
218 Ga0070666_10029852
219 Ga0070669_100010732
220 Ga0070675_100012523
221 Ga0070667_100040120
222 Ga0070678_100029241
223 Ga0105251_10015859
224 Ga0105251_10037209
225 Ga0105244_10003278
226 Ga0105244_10017564
227 Ga0105245_10035533
228 Ga0105243_10091992
229 Ga0105238_10148528
230 Ga0105246_10000888
231 Ga0105246_10036112
232 Ga0157371_10032185
233 Ga0157370_10012123
234 Ga0207425_1003092
235 Ga0209129_1000159
236 Ga0209025_1000211
237 Ga0209025_1002281
238 Ga0207655_1000544
239 Ga0207655_1003537
240 Ga0207655_1017637
241 Ga0207655_1025749
242 Ga0207645_10001051
243 Ga0207645_10007571
244 Ga0207681_10055815
245 Ga0207650_10017200
246 Ga0207659_10007512
247 Ga0207706_10056769
248 Ga0207669_10013591
249 Ga0207669_10041850
250 Ga0207691_10012886
251 Ga0207651_10038260
252 Ga0207658_10078274
253 Ga0207677_10041759
254 Ga0207675_100034058
255 Ga0207683_10006658
256 Ga0207428_10006099
257 Ga0207428_10052403
258 Ga0307515_10138081
259 Ga0307513_10015597
260 Ga0307408_100008458
261 Ga0307408_100011596
262 Ga0307408_100030962
263 Ga0307408_100032751
264 Ga0307408_100033913
265 Ga0307408_100094765
266 Ga0307514_10009902
267 Ga0265342_10017701
268 Ga0307516_10000067
269 Ga0307405_10012378
270 Ga0307405_10014304
271 Ga0307405_10024891
272 Ga0307405_10033077
273 Ga0307413_10043499
274 Ga0307413_10044059
275 Ga0307410_10002024
276 Ga0307410_10005030
277 Ga0307410_10073372
278 Ga0307407_10017022
279 Ga0307407_10088615
280 Ga0307407_10090920
281 Ga0307412_10003191
282 Ga0307412_10006510
283 Ga0307412_10016130
284 Ga0307412_10022451
285 Ga0307412_10039937
286 Ga0307412_10054399
287 Ga0307412_10086972
288 Ga0307409_100028200
289 Ga0307409_100056987
290 Ga0307416_100062089
291 Ga0307416_100084101
292 Ga0307416_100158426
293 Ga0307414_10051619
294 Ga0307414_10070251
295 Ga0307414_10091627
296 Ga0307411_10124999
297 Ga0395899_0003233
298 Ga0395899_0018372
299 Ga0395899_0040986
300 Ga0395899_0053841
301 Ga0395900_0052409
302 Ga0395900_0113929
303 Ga0395900_0163915
304 Ga0395898_0000960
305 Ga0395898_0015696
306 Ga0395898_0022883
307 Ga0395898_0069299
308 Ga0395898_0132932
309 Ga0395901_0003969
310 Ga0395901_0048574
311 Ga0395901_0152021
312 Ga0439442_001837
313 Ga0439449_0000390
314 Ga0439449_0001574
315 Ga0439457_006430
316 Ga0439457_008151
317 Ga0439462_0009906
318 Ga0450920_000552
319 Ga0450920_005866
320 Ga0450907_000263
321 Ga0439434_0003011
322 Ga0439434_0006847
323 Ga0439434_0011918
324 Ga0450918_000361
325 Ga0466972_0002184
326 Ga0466965_0026982
327 Ga0466970_0000873
328 Ga0466960_0000083
329 Ga0466960_0045732
330 Ga0466967_0052362
331 Ga0466967_0193122
332 Ga0495653_0020720
333 Ga0495664_0009242
334 Ga0495630_0087709
335 Ga0495586_0064135
336 Ga0495587_0003374
337 Ga0495656_0059272
338 Ga0495588_0017186
339 Ga0495588_0060111
340 Ga0495657_0063915
341 Ga0495623_0057715
342 Ga0495581_0000905
343 Ga0496100_0025055
344 Ga0496101_0013834
345 Ga0496101_0085096
346 Ga0496102_0015533
347 Ga0496102_0020184
348 Ga0496102_0027710
349 Ga0496103_0005918
350 Ga0496103_0024952
351 Ga0496104_0022013
352 Ga0496106_0014134
353 Ga0496110_0010677
354 Ga0496111_0052251
355 Ga0496112_0094706
356 Ga0496114_0019171
357 Ga0496114_0217087
358 Ga0496117_0000071
359 Ga0496124_0062053
360 Ga0496126_0001762
361 Ga0501032_0000351
362 Ga0501033_0055933
363 Ga0501034_0000001
364 Ga0501034_0000057
365 Ga0501037_0036066
366 Ga0501039_0000033
367 Ga0495655_0000784
368 2808876426
369 2537899171
370 2537900992
371 2555228791
372 2555230110
373 2558909129
374 2643752487
375 2655031066
376 2691512636
377 2729909367
378 2739603547
379 2739604117
380 2775657604
381 2808829879
382 2808851056
383 2808894160
384 2808897947
385 2812318422
386 2816507613
387 2817507913
388 2817509872
389 2844851522
390 2857479826
391 2857634899
392 2857710723
393 2857711393
394 2857727539
395 2857728010
396 2870804004
397 2870805889
398 2904780497
399 2906799953
400 2919053679
401 2919054980
402 2919063203
403 2919393705
404 2919539532
405 2920880392
406 2933420301
407 2939600359
408 2939647252
409 2939674792
410 2945916172
411 2945923719
412 2945943512
413 2945959240
414 2946037077
415 2946039183
416 2946040535
417 2946059983
418 2954001795
419 2974305419
420 2995726498
421 8025535009
422 8054473921
423 8055034723
424 8055226981

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02776

TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

54

170

0.97

PF00205

TPP_enzyme_M

Thiamine pyrophosphate enzyme, central domain

239

375

0.9

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

435

585

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6lpi-assembly1.cif.gz_A crystal structure of ahas holo-enzyme 0.9035 2 489
4rji-assembly1.cif.gz_A acetolactate synthase from bacillus subtilis bound to thdp - crystal form i 0.9014 2 483
4rji-assembly1.cif.gz_D acetolactate synthase from bacillus subtilis bound to thdp - crystal form i 0.8994 2 483
8i01-assembly2.cif.gz_F crystal structure of escherichia coli glyoxylate carboligase 0.8977 2 484
4rjk-assembly3.cif.gz_H-3 acetolactate synthase from bacillus subtilis bound to lthdp - crystal form ii 0.8961 2 483
ID Description Score Start End Superfamily
af_B0G117_40_223_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9589 2 109 3.40.50.970
af_Q9UJ83_3_186_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9497 2 110 3.40.50.970
af_P39994_1_170_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9408 2 108 3.40.50.970
af_P9WG39_1_179_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9374 2 112 3.40.50.970
af_Q54DA9_1_176_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9351 2 115 3.40.50.970
ID Description Score Start End GO Terms
AF-X6MD86-F1-model_v4 Thiamine pyrophosphate-binding enzyme family protein 0.9671 2 110 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A7L3CF79-F1-model_v4 ILVBL protein 0.9659 14 112 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A434SL68-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9651 1 109 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-X1SCB6-F1-model_v4 Uncharacterized protein 0.963 27 113 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0050660
AF-A0A7R9H3J0-F1-model_v4 Thiamine pyrophosphate enzyme N-terminal TPP-binding domain-containing protein 0.9574 2 109 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660

Map