F323025

General Info

Members Datasets Scaffolds Average Seq Length
212 135 424 297

Family's Representative Sequence

Representative Sequence 3300032002|Ga0307416_100317655|Ga0307416_1003176552
Length 329
Sequence LGRARRAADAGRRHTTRSGRSRTSRPVTAADHCARGSLQPLPGQKPEPSHARNAGAVLPFDSGRAFEHVRQLVAIGPRPAGSPGIEAARRYIRAQITAIGLSTTERAFEAQTPVGPLTMVNLSVVVPGARPERLVIGGHYDTKLFRRFRFVGANDGGSSAALLLELARVLKDRRNPFTIELVFFDGEEAVLEWTGTDHTYGSRQYVETARASATLNTIGAMLLVDMVGDRNLNIRRESNSTRWLTDIIWAAAARLGHGDVFLDEPLAVEDDHVPFLAAGVAAVDIIDLDYPAWHTADDTLENVSARSLQTVGDVLLAALPQIEAALRKQ

Samples

Sample ID Description Type Environment
1 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
36 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
37 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
82 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
83 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
84 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
85 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
86 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
87 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
88 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
89 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
90 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
91 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
92 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
93 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
94 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
95 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
107 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
108 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
109 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
110 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
111 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
112 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
113 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
114 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
115 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
116 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
117 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
118 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
120 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
121 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
122 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
123 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
124 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
128 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
129 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
130 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
131 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
132 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
133 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
135 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.77
Nodule 0
Rhizoplane 6.6
Rhizosphere 89.62
Stem 0
Stem Tuber 0
Unclassified 3.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307416_100317655 3300032002 Bacteria 1558
2 Ga0065704_10133568 3300005289 Bacteria 1598
3 Ga0065712_10068324 3300005290 Bacteria 11713
4 Ga0065715_10096657 3300005293 Bacteria 3844
5 Ga0065715_10106342 3300005293 Bacteria 2821
6 Ga0065707_10001718 3300005295 Bacteria 6083
7 Ga0070683_100007861 3300005329 Bacteria 9033
8 Ga0070670_100004308 3300005331 Bacteria 11908
9 Ga0070670_100008277 3300005331 Bacteria 8854
10 Ga0070670_100020653 3300005331 Bacteria 5664
11 Ga0070689_100017835 3300005340 Bacteria 5218
12 Ga0070689_100175525 3300005340 Unclassified 1738
13 Ga0070687_100037679 3300005343 Bacteria 2418
14 Ga0070687_100197061 3300005343 Bacteria 1218
15 Ga0070661_100005522 3300005344 Bacteria 8714
16 Ga0070669_100033720 3300005353 Bacteria 3704
17 Ga0070669_100119979 3300005353 Bacteria 2005
18 Ga0070675_100014785 3300005354 Bacteria 6159
19 Ga0070675_100241562 3300005354 Bacteria 1578
20 Ga0070671_100395253 3300005355 Bacteria 1182
21 Ga0070671_100508794 3300005355 Unclassified 1036
22 Ga0070674_100026282 3300005356 Bacteria 3800
23 Ga0070673_100052906 3300005364 Bacteria 3187
24 Ga0070673_100454409 3300005364 Bacteria 1153
25 Ga0070701_10115231 3300005438 Bacteria 1507
26 Ga0070705_100107608 3300005440 Bacteria 1774
27 Ga0070663_100066881 3300005455 Bacteria 2605
28 Ga0070662_100084495 3300005457 Bacteria 2371
29 Ga0070662_100260615 3300005457 Bacteria 1397
30 Ga0070681_10100353 3300005458 Bacteria 2840
31 Ga0070685_10039528 3300005466 Bacteria 2681
32 Ga0070706_100423752 3300005467 Bacteria 1238
33 Ga0070707_100273859 3300005468 Bacteria 1641
34 Ga0070679_100355607 3300005530 Bacteria 1412
35 Ga0068853_100322157 3300005539 Bacteria 1433
36 Ga0070672_100122402 3300005543 Bacteria 2131
37 Ga0070686_100006312 3300005544 Bacteria 6585
38 Ga0070704_100271108 3300005549 Unclassified 1402
39 Ga0070664_100004582 3300005564 Bacteria 11094
40 Ga0068857_100029245 3300005577 Bacteria 4863
41 Ga0068857_100351280 3300005577 Bacteria 1365
42 Ga0068864_100014423 3300005618 Bacteria 6563
43 Ga0068864_100187511 3300005618 Bacteria 1894
44 Ga0068861_100102565 3300005719 Bacteria 2278
45 Ga0068860_100301755 3300005843 Unclassified 1569
46 Ga0068862_100027269 3300005844 Bacteria 4807
47 Ga0075364_10050000 3300006051 Bacteria 2727
48 Ga0075362_10008254 3300006177 Bacteria 3976
49 Ga0075367_10042075 3300006178 Bacteria 2672
50 Ga0075428_100000008 3300006844 Bacteria 271300
51 Ga0075428_100011956 3300006844 Bacteria 9657
52 Ga0075428_100032916 3300006844 Bacteria 5724
53 Ga0075430_100005511 3300006846 Bacteria 10694
54 Ga0075431_100025842 3300006847 Bacteria 6018
55 Ga0075431_100062464 3300006847 Bacteria 3843
56 Ga0075431_100216714 3300006847 Bacteria 1953
57 Ga0075433_10035193 3300006852 Bacteria 4305
58 Ga0075433_10214570 3300006852 Bacteria 1710
59 Ga0075434_100105966 3300006871 Bacteria 2821
60 Ga0075434_100425507 3300006871 Bacteria 1349
61 Ga0075434_100614186 3300006871 Bacteria 1106
62 Ga0075429_100042752 3300006880 Bacteria 3943
63 Ga0075435_100090782 3300007076 Bacteria 2520
64 Ga0075435_100316787 3300007076 Bacteria 1335
65 Ga0111539_10000020 3300009094 Bacteria 265282
66 Ga0111539_10001306 3300009094 Bacteria 33285
67 Ga0111539_10002485 3300009094 Bacteria 24447
68 Ga0111539_10516159 3300009094 Bacteria 1392
69 Ga0114129_10033290 3300009147 Bacteria 7283
70 Ga0114129_10832391 3300009147 Bacteria 1175
71 Ga0105242_10573610 3300009176 Bacteria 1085
72 Ga0105248_10106965 3300009177 Bacteria 3154
73 Ga0105249_10001159 3300009553 Bacteria 23309
74 Ga0157375_10305808 3300013308 Bacteria 1754
75 Ga0163163_10006876 3300014325 Bacteria 9985
76 Ga0163163_10018034 3300014325 Bacteria 6593
77 Ga0163163_10226474 3300014325 Bacteria 1919
78 Ga0157380_10098123 3300014326 Bacteria 2433
79 Ga0157377_10047195 3300014745 Bacteria 2412
80 Ga0157377_10074217 3300014745 Bacteria 1973
81 Ga0207684_10097533 3300025910 Bacteria 2510
82 Ga0207684_10304085 3300025910 Bacteria 1375
83 Ga0207662_10044428 3300025918 Bacteria 2623
84 Ga0207657_10138130 3300025919 Bacteria 1993
85 Ga0207650_10002655 3300025925 Bacteria 12380
86 Ga0207650_10005051 3300025925 Bacteria 9003
87 Ga0207706_10054466 3300025933 Bacteria 3530
88 Ga0207670_10102732 3300025936 Bacteria 2044
89 Ga0207670_10129429 3300025936 Bacteria 1847
90 Ga0207669_10005323 3300025937 Bacteria 5763
91 Ga0207691_10032989 3300025940 Bacteria 4824
92 Ga0207691_10226435 3300025940 Bacteria 1620
93 Ga0207711_10052341 3300025941 Bacteria 3499
94 Ga0207661_10012996 3300025944 Bacteria 6076
95 Ga0207679_10075840 3300025945 Bacteria 2553
96 Ga0207712_10002956 3300025961 Bacteria 10847
97 Ga0207639_10144324 3300026041 Bacteria 1987
98 Ga0207678_10032224 3300026067 Bacteria 4568
99 Ga0207676_10164271 3300026095 Bacteria 1927
100 Ga0207676_10321137 3300026095 Bacteria 1421
101 Ga0207674_10402025 3300026116 Bacteria 1323
102 Ga0207675_100071663 3300026118 Bacteria 3240
103 Ga0209971_1015406 3300027682 Bacteria 1812
104 Ga0209998_10033968 3300027717 Bacteria 1139
105 Ga0207428_10000021 3300027907 Bacteria 276436
106 Ga0207428_10033276 3300027907 Bacteria 4235
107 Ga0268266_10143477 3300028379 Unclassified 2145
108 Ga0268265_10021687 3300028380 Bacteria 4504
109 Ga0307413_10435195 3300031824 Bacteria 1037
110 Ga0307407_10031213 3300031903 Bacteria 2883
111 Ga0307412_10259989 3300031911 Bacteria 1353
112 Ga0307409_100477917 3300031995 Bacteria 1208
113 Ga0307414_10061321 3300032004 Bacteria 2664
114 Ga0395905_0059667 3300037471 Bacteria 3566
115 Ga0439431_0056081 3300041997 Bacteria 1030
116 Ga0450920_026375 3300042122 Bacteria 1134
117 Ga0439434_0075410 3300042435 Bacteria 1065
118 Ga0496100_0162918 3300048903 Bacteria 1600
119 Ga0496101_0065839 3300048904 Bacteria 2642
120 Ga0496102_0023956 3300048905 Bacteria 5426
121 Ga0496103_0048550 3300048906 Bacteria 2623
122 Ga0496108_0012631 3300048911 Bacteria 6881
123 Ga0496109_0004973 3300048912 Bacteria 11096
124 Ga0496110_0003082 3300048913 Bacteria 12641
125 Ga0496111_0029130 3300048914 Bacteria 3919
126 Ga0496111_0226223 3300048914 Bacteria 1390
127 Ga0496112_0000767 3300048915 Bacteria 22587
128 Ga0496112_0021327 3300048915 Bacteria 6160
129 Ga0496112_0287309 3300048915 Bacteria 1591
130 Ga0496113_0176899 3300048916 Bacteria 1691
131 Ga0496113_0188044 3300048916 Bacteria 1639
132 Ga0501031_0164583 3300049568 Bacteria 1450
133 Ga0501033_0058174 3300049570 Bacteria 2856
134 Ga0501034_0007838 3300049571 Bacteria 11356
135 Ga0501034_0020581 3300049571 Bacteria 6739
136 Ga0501034_0149004 3300049571 Bacteria 2316
137 Ga0501036_0006885 3300049572 Bacteria 9239
138 Ga0501036_0043433 3300049572 Bacteria 3807
139 Ga0501036_0073071 3300049572 Bacteria 2900
140 Ga0501036_0265317 3300049572 Bacteria 1438
141 Ga0501038_0029775 3300049574 Bacteria 4835
142 Ga0501039_0066636 3300049575 Bacteria 2795
143 Ga0501040_0004671 3300049576 Bacteria 8884
144 Ga0501041_0007794 3300049577 Bacteria 6289
145 Ga0501042_0009991 3300049578 Bacteria 6346
146 Ga0501042_0016364 3300049578 Bacteria 5088
147 Ga0501046_0009875 3300049580 Bacteria 8225
148 Ga0501046_0190601 3300049580 Bacteria 1529
149 Ga0501048_0052176 3300049582 Bacteria 2910
150 Ga0501048_0073508 3300049582 Bacteria 2413
151 Ga0501068_0036701 3300049584 Bacteria 2932
152 Ga0501070_0317712 3300049586 Bacteria 1267
153 Ga0501071_0033514 3300049587 Bacteria 3649
154 Ga0501071_0070861 3300049587 Bacteria 2540
155 Ga0501071_0287276 3300049587 Bacteria 1245
156 Ga0501071_0343508 3300049587 Bacteria 1135
157 Ga0501072_0031462 3300049588 Bacteria 4154
158 Ga0501072_0040767 3300049588 Bacteria 3646
159 Ga0501072_0075814 3300049588 Bacteria 2660
160 Ga0501072_0076195 3300049588 Bacteria 2654
161 Ga0501073_0065013 3300049589 Bacteria 2544
162 Ga0501073_0112535 3300049589 Bacteria 1888
163 Ga0501073_0251853 3300049589 Bacteria 1219
164 Ga0501074_0031458 3300049590 Bacteria 3844
165 Ga0501074_0065151 3300049590 Bacteria 2623
166 Ga0501074_0271766 3300049590 Bacteria 1205
167 Ga0501075_0000554 3300049591 Bacteria 22626
168 Ga0501075_0020910 3300049591 Bacteria 4767
169 Ga0501075_0031282 3300049591 Bacteria 3949
170 Ga0501075_0083462 3300049591 Bacteria 2420
171 Ga0501076_0003847 3300049592 Bacteria 10567
172 Ga0501076_0200680 3300049592 Bacteria 1629
173 Ga0501076_0317556 3300049592 Bacteria 1278
174 Ga0501077_0037895 3300049593 Bacteria 3070
175 Ga0501079_0002354 3300049741 Bacteria 13717
176 Ga0501079_0056022 3300049741 Bacteria 3042
177 Ga0501080_0061564 3300049742 Bacteria 3494
178 Ga0501081_0000345 3300049743 Bacteria 24974
179 Ga0501081_0341725 3300049743 Bacteria 1102
180 Ga0501035_0383381 3300049822 Bacteria 1172
181 Ga0501045_0002668 3300049824 Bacteria 12169
182 Ga0501045_0007589 3300049824 Bacteria 7539
183 Ga0501045_0014039 3300049824 Bacteria 5670
184 nmdc:mga03683_3703_c1 3300050489 Bacteria 4981
185 nmdc:mga00v17_1442_c1 3300050491 Bacteria 12457
186 nmdc:mga0yw44_112748_c1 3300050492 Unclassified 1744
187 nmdc:mga0k408_325722_c1 3300050493 Unclassified 917
188 nmdc:mga06z11_57188_c1 3300050494 Bacteria 2020
189 nmdc:mga05p37_518651_c1 3300050507 Bacteria 1364
190 nmdc:mga05p37_9004_c1 3300050507 Bacteria 11808
191 nmdc:mga09592_20212_c1 3300050508 Bacteria 5471
192 nmdc:mga06r32_52844_c1 3300050510 Bacteria 3892
193 nmdc:mga06r32_62034_c1 3300050510 Bacteria 3601
194 nmdc:mga06r32_77236_c1 3300050510 Bacteria 3234
195 nmdc:mga08y16_3012_c1 3300050511 Bacteria 17384
196 nmdc:mga08y16_6540_c1 3300050511 Bacteria 12219
197 nmdc:mga08y16_8_c1 3300050511 Bacteria 571177
198 nmdc:mga0n895_105657_c1 3300050512 Bacteria 2828
199 nmdc:mga0n895_244506_c1 3300050512 Bacteria 1821
200 nmdc:mga0rr50_294106_c1 3300050513 Bacteria 1357
201 nmdc:mga0rr50_3770_c1 3300050513 Bacteria 8791
202 nmdc:mga0a205_288909_c1 3300050515 Bacteria 1514
203 nmdc:mga0a205_3571_c1 3300050515 Bacteria 13925
204 Ga0495619_0112779 3300053085 Bacteria 1859
205 Ga0501084_0014504 3300054114 Bacteria 6532
206 Ga0501084_0035373 3300054114 Bacteria 4176
207 Ga0501082_0001775 3300060353 Bacteria 18973
208 Ga0501082_0079418 3300060353 Bacteria 2831
209 Ga0501082_0097391 3300060353 Bacteria 2543
210 Ga0530510_0003009 3300061734 Bacteria 11563
211 Ga0530510_0020550 3300061734 Bacteria 4694
212 Ga0530510_0045336 3300061734 Bacteria 3176
213 Ga0307416_100317655
214 Ga0065704_10133568
215 Ga0065712_10068324
216 Ga0065715_10096657
217 Ga0065715_10106342
218 Ga0065707_10001718
219 Ga0070683_100007861
220 Ga0070670_100004308
221 Ga0070670_100008277
222 Ga0070670_100020653
223 Ga0070689_100017835
224 Ga0070689_100175525
225 Ga0070687_100037679
226 Ga0070687_100197061
227 Ga0070661_100005522
228 Ga0070669_100033720
229 Ga0070669_100119979
230 Ga0070675_100014785
231 Ga0070675_100241562
232 Ga0070671_100395253
233 Ga0070671_100508794
234 Ga0070674_100026282
235 Ga0070673_100052906
236 Ga0070673_100454409
237 Ga0070701_10115231
238 Ga0070705_100107608
239 Ga0070663_100066881
240 Ga0070662_100084495
241 Ga0070662_100260615
242 Ga0070681_10100353
243 Ga0070685_10039528
244 Ga0070706_100423752
245 Ga0070707_100273859
246 Ga0070679_100355607
247 Ga0068853_100322157
248 Ga0070672_100122402
249 Ga0070686_100006312
250 Ga0070704_100271108
251 Ga0070664_100004582
252 Ga0068857_100029245
253 Ga0068857_100351280
254 Ga0068864_100014423
255 Ga0068864_100187511
256 Ga0068861_100102565
257 Ga0068860_100301755
258 Ga0068862_100027269
259 Ga0075364_10050000
260 Ga0075362_10008254
261 Ga0075367_10042075
262 Ga0075428_100000008
263 Ga0075428_100011956
264 Ga0075428_100032916
265 Ga0075430_100005511
266 Ga0075431_100025842
267 Ga0075431_100062464
268 Ga0075431_100216714
269 Ga0075433_10035193
270 Ga0075433_10214570
271 Ga0075434_100105966
272 Ga0075434_100425507
273 Ga0075434_100614186
274 Ga0075429_100042752
275 Ga0075435_100090782
276 Ga0075435_100316787
277 Ga0111539_10000020
278 Ga0111539_10001306
279 Ga0111539_10002485
280 Ga0111539_10516159
281 Ga0114129_10033290
282 Ga0114129_10832391
283 Ga0105242_10573610
284 Ga0105248_10106965
285 Ga0105249_10001159
286 Ga0157375_10305808
287 Ga0163163_10006876
288 Ga0163163_10018034
289 Ga0163163_10226474
290 Ga0157380_10098123
291 Ga0157377_10047195
292 Ga0157377_10074217
293 Ga0207684_10097533
294 Ga0207684_10304085
295 Ga0207662_10044428
296 Ga0207657_10138130
297 Ga0207650_10002655
298 Ga0207650_10005051
299 Ga0207706_10054466
300 Ga0207670_10102732
301 Ga0207670_10129429
302 Ga0207669_10005323
303 Ga0207691_10032989
304 Ga0207691_10226435
305 Ga0207711_10052341
306 Ga0207661_10012996
307 Ga0207679_10075840
308 Ga0207712_10002956
309 Ga0207639_10144324
310 Ga0207678_10032224
311 Ga0207676_10164271
312 Ga0207676_10321137
313 Ga0207674_10402025
314 Ga0207675_100071663
315 Ga0209971_1015406
316 Ga0209998_10033968
317 Ga0207428_10000021
318 Ga0207428_10033276
319 Ga0268266_10143477
320 Ga0268265_10021687
321 Ga0307413_10435195
322 Ga0307407_10031213
323 Ga0307412_10259989
324 Ga0307409_100477917
325 Ga0307414_10061321
326 Ga0395905_0059667
327 Ga0439431_0056081
328 Ga0450920_026375
329 Ga0439434_0075410
330 Ga0496100_0162918
331 Ga0496101_0065839
332 Ga0496102_0023956
333 Ga0496103_0048550
334 Ga0496108_0012631
335 Ga0496109_0004973
336 Ga0496110_0003082
337 Ga0496111_0029130
338 Ga0496111_0226223
339 Ga0496112_0000767
340 Ga0496112_0021327
341 Ga0496112_0287309
342 Ga0496113_0176899
343 Ga0496113_0188044
344 Ga0501031_0164583
345 Ga0501033_0058174
346 Ga0501034_0007838
347 Ga0501034_0020581
348 Ga0501034_0149004
349 Ga0501036_0006885
350 Ga0501036_0043433
351 Ga0501036_0073071
352 Ga0501036_0265317
353 Ga0501038_0029775
354 Ga0501039_0066636
355 Ga0501040_0004671
356 Ga0501041_0007794
357 Ga0501042_0009991
358 Ga0501042_0016364
359 Ga0501046_0009875
360 Ga0501046_0190601
361 Ga0501048_0052176
362 Ga0501048_0073508
363 Ga0501068_0036701
364 Ga0501070_0317712
365 Ga0501071_0033514
366 Ga0501071_0070861
367 Ga0501071_0287276
368 Ga0501071_0343508
369 Ga0501072_0031462
370 Ga0501072_0040767
371 Ga0501072_0075814
372 Ga0501072_0076195
373 Ga0501073_0065013
374 Ga0501073_0112535
375 Ga0501073_0251853
376 Ga0501074_0031458
377 Ga0501074_0065151
378 Ga0501074_0271766
379 Ga0501075_0000554
380 Ga0501075_0020910
381 Ga0501075_0031282
382 Ga0501075_0083462
383 Ga0501076_0003847
384 Ga0501076_0200680
385 Ga0501076_0317556
386 Ga0501077_0037895
387 Ga0501079_0002354
388 Ga0501079_0056022
389 Ga0501080_0061564
390 Ga0501081_0000345
391 Ga0501081_0341725
392 Ga0501035_0383381
393 Ga0501045_0002668
394 Ga0501045_0007589
395 Ga0501045_0014039
396 nmdc:mga03683_3703_c1
397 nmdc:mga00v17_1442_c1
398 nmdc:mga0yw44_112748_c1
399 nmdc:mga0k408_325722_c1
400 nmdc:mga06z11_57188_c1
401 nmdc:mga05p37_518651_c1
402 nmdc:mga05p37_9004_c1
403 nmdc:mga09592_20212_c1
404 nmdc:mga06r32_52844_c1
405 nmdc:mga06r32_62034_c1
406 nmdc:mga06r32_77236_c1
407 nmdc:mga08y16_3012_c1
408 nmdc:mga08y16_6540_c1
409 nmdc:mga08y16_8_c1
410 nmdc:mga0n895_105657_c1
411 nmdc:mga0n895_244506_c1
412 nmdc:mga0rr50_294106_c1
413 nmdc:mga0rr50_3770_c1
414 nmdc:mga0a205_288909_c1
415 nmdc:mga0a205_3571_c1
416 Ga0495619_0112779
417 Ga0501084_0014504
418 Ga0501084_0035373
419 Ga0501082_0001775
420 Ga0501082_0079418
421 Ga0501082_0097391
422 Ga0530510_0003009
423 Ga0530510_0020550
424 Ga0530510_0045336

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04389

Peptidase_M28

Peptidase family M28

121

319

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6qql-assembly2.cif.gz_B crystal structure of porphyromonas gingivalis glutaminyl cyclase 0.9292 49 312
7d1e-assembly1.cif.gz_A crystal structure of bacteroides thetaiotaomicron glutaminyl cyclase bound to n-acetylhistamine 0.9231 48 308
4fuu-assembly1.cif.gz_A crystal structure of a leucine aminopeptidase precursor (bt_2548) from bacteroides thetaiotaomicron vpi-5482 at 1.30 a resolution 0.9222 48 308
7cjg-assembly2.cif.gz_B structural and kinetic characterization of porphyromonas gingivalis glutaminyl cyclase 0.9213 49 312
3gux-assembly2.cif.gz_B crystal structure of a putative zn-dependent exopeptidase (bvu_1317) from bacteroides vulgatus atcc 8482 at 1.80 a resolution 0.9101 48 307
ID Description Score Start End Superfamily
4fuuA00 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9136 48 308 3.40.630.10
3guxB00 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9071 48 305 3.40.630.10
af_G5EBT9_32_353_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8906 49 311 3.40.630.10
af_Q9VTH7_29_337_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8793 50 317 3.40.630.10
4fwuA00 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.875 50 315 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A523CVB3-F1-model_v4 M28 family peptidase 0.9733 49 317 GO:0008270
GO:0016603
AF-A0A1F2SDU2-F1-model_v4 Peptidase M28 domain-containing protein 0.9722 51 317 GO:0008270
GO:0016603
AF-A0A2V6WSI6-F1-model_v4 Peptidase M28 domain-containing protein 0.9708 123 318 GO:0008270
GO:0016603
AF-A0A1F2S2F4-F1-model_v4 Peptidase M28 domain-containing protein 0.9705 51 314 GO:0008270
GO:0016603
AF-A0A7C4G5L9-F1-model_v4 M28 family peptidase 0.9641 47 314 GO:0008270
GO:0016603

Map