F321466

General Info

Members Datasets Scaffolds Average Seq Length
211 137 422 313

Family's Representative Sequence

Representative Sequence 3300006051|Ga0075364_10005175|Ga0075364_100051758
Length 337
Sequence MKCRVCREPAIIDIRRHNANFCTEHFLRLCRDQVERSIKDFGMLTRDEKALVAVSGGKDSLAVWDLLLDLGYQADGLYLGLGIGDYSDESGRLAQAYADRRGAHLVRVDLPGEYGYDIPAGSRAAKRAPCSACGLSKRHLFDQAAIDGGYDVVVTGHNLDDEAAVLFGNVLHWQTDYLGRQLPVLPARHGFPRKVKPLVRLGEREMAAYCVVKGIDYIVEECPMAAGNKHLGYKSALNDIEASSPGAKHSFYFGFLERASAMFRPEAEAEQDDLLHPCPTCGAPTGAVTPDGEPTTCAFCRLVVRAGGHHPPPRDASDVPVHLDTDRRRAAVQEASP

Samples

Sample ID Description Type Environment
1 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
14 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
39 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
65 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
66 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
67 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
68 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
69 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
70 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
71 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
78 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
83 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
84 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
85 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
86 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
90 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
91 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
96 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
97 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
113 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
114 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
115 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
116 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
117 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
118 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
119 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
120 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
121 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
122 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
124 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
125 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
126 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
127 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
134 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
137 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.1
Metatranscriptomes 1.9
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.06
Nodule 0
Rhizoplane 9.95
Rhizosphere 76.3
Stem 0
Stem Tuber 0
Unclassified 0.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075364_10005175 3300006051 Bacteria 7564
2 Ga0070680_100023992 3300005336 Bacteria 4868
3 Ga0070680_100113699 3300005336 Bacteria 2255
4 Ga0070660_100035820 3300005339 Bacteria 3757
5 Ga0070673_100077416 3300005364 Bacteria 2688
6 Ga0070667_100128649 3300005367 Bacteria 2209
7 Ga0070708_100012222 3300005445 Bacteria 7001
8 Ga0070678_100270080 3300005456 Bacteria 1434
9 Ga0070681_10086872 3300005458 Bacteria 3081
10 Ga0070681_10227173 3300005458 Bacteria 1781
11 Ga0068867_100004800 3300005459 Bacteria 9516
12 Ga0070684_100031014 3300005535 Bacteria 4548
13 Ga0070695_100003445 3300005545 Bacteria 9242
14 Ga0070696_100008172 3300005546 Bacteria 7002
15 Ga0068861_100078894 3300005719 Bacteria 2573
16 Ga0068858_100255209 3300005842 Bacteria 1666
17 Ga0068862_100245124 3300005844 Bacteria 1631
18 Ga0068862_100334530 3300005844 Bacteria 1401
19 Ga0081455_10029091 3300005937 Bacteria 5040
20 Ga0075368_10009726 3300006042 Bacteria 3464
21 Ga0075363_100009842 3300006048 Bacteria 4509
22 Ga0075363_100015639 3300006048 Bacteria 3733
23 Ga0075363_100038829 3300006048 Bacteria 2504
24 Ga0075363_100069378 3300006048 Bacteria 1912
25 Ga0075364_10005445 3300006051 Bacteria 7395
26 Ga0075367_10041054 3300006178 Bacteria 2703
27 Ga0075367_10045348 3300006178 Bacteria 2580
28 Ga0075428_100000110 3300006844 Bacteria 69621
29 Ga0075428_100075912 3300006844 Bacteria 3669
30 Ga0075430_100102988 3300006846 Bacteria 2383
31 Ga0075430_100224965 3300006846 Bacteria 1556
32 Ga0075429_100076552 3300006880 Bacteria 2914
33 Ga0075429_100095864 3300006880 Bacteria 2587
34 Ga0068865_100105990 3300006881 Bacteria 2066
35 Ga0111539_10053559 3300009094 Bacteria 4803
36 Ga0105245_10008047 3300009098 Bacteria 9221
37 Ga0114129_10886876 3300009147 Bacteria 1131
38 Ga0105242_10063696 3300009176 Bacteria 3037
39 Ga0105248_10135825 3300009177 Bacteria 2774
40 Ga0105248_10419687 3300009177 Bacteria 1507
41 Ga0157371_10117360 3300013102 Unclassified 1892
42 Ga0157369_10088720 3300013105 Bacteria 3302
43 Ga0157369_10261034 3300013105 Bacteria 1806
44 Ga0157378_10002711 3300013297 Bacteria 15769
45 Ga0163162_10154120 3300013306 Bacteria 2417
46 Ga0157372_10063245 3300013307 Bacteria 4148
47 Ga0157375_10067714 3300013308 Bacteria 3568
48 Ga0157375_10095147 3300013308 Bacteria 3049
49 Ga0163163_10079680 3300014325 Bacteria 3273
50 Ga0157379_10016840 3300014968 Bacteria 6433
51 Ga0206356_10576830 3300020070 Bacteria 2045
52 Ga0206354_10601165 3300020081 Bacteria 6763
53 Ga0206353_10933256 3300020082 Bacteria 2292
54 Ga0206353_11925843 3300020082 Bacteria 6079
55 Ga0213873_10019488 3300021358 Bacteria 1574
56 Ga0213876_10182308 3300021384 Bacteria 1117
57 Ga0207697_10055015 3300025315 Bacteria 1649
58 Ga0207705_10005798 3300025909 Bacteria 9200
59 Ga0207684_10305470 3300025910 Bacteria 1371
60 Ga0207707_10004266 3300025912 Bacteria 12655
61 Ga0207707_10057931 3300025912 Bacteria 3372
62 Ga0207707_10077816 3300025912 Bacteria 2896
63 Ga0207707_10155022 3300025912 Bacteria 2003
64 Ga0207660_10004617 3300025917 Bacteria 8977
65 Ga0207662_10234187 3300025918 Bacteria 1200
66 Ga0207657_10046241 3300025919 Bacteria 3813
67 Ga0207652_10001817 3300025921 Bacteria 18490
68 Ga0207652_10029936 3300025921 Bacteria 4557
69 Ga0207681_10179664 3300025923 Bacteria 1611
70 Ga0207659_10443952 3300025926 Bacteria 1092
71 Ga0207669_10066136 3300025937 Bacteria 2246
72 Ga0207669_10370265 3300025937 Bacteria 1113
73 Ga0207704_10093915 3300025938 Bacteria 1979
74 Ga0207651_10056597 3300025960 Bacteria 2700
75 Ga0207658_10127443 3300025986 Bacteria 2040
76 Ga0207703_10193832 3300026035 Bacteria 1802
77 Ga0207641_10013010 3300026088 Bacteria 6824
78 Ga0207648_10051306 3300026089 Bacteria 3605
79 Ga0207675_100031738 3300026118 Bacteria 4922
80 Ga0207683_10315623 3300026121 Bacteria 1431
81 Ga0207428_10076377 3300027907 Bacteria 2623
82 Ga0268265_10188932 3300028380 Bacteria 1777
83 Ga0265338_10114450 3300028800 Bacteria 2165
84 Ga0265338_10217773 3300028800 Bacteria 1428
85 Ga0265327_10004127 3300031251 Bacteria 13119
86 Ga0265327_10078398 3300031251 Bacteria 1637
87 Ga0316576_10007601 3300031727 Bacteria 6837
88 Ga0316576_10054549 3300031727 Bacteria 2915
89 Ga0316578_10004395 3300031728 Bacteria 6652
90 Ga0316578_10013292 3300031728 Bacteria 4363
91 Ga0316577_10033242 3300031733 Bacteria 2881
92 Ga0316585_10007915 3300032137 Bacteria 3074
93 Ga0316580_10013765 3300032139 Bacteria 2465
94 Ga0316574_0010229 3300035398 Bacteria 5291
95 Ga0316574_0011011 3300035398 Bacteria 5128
96 Ga0316574_0016692 3300035398 Bacteria 4283
97 Ga0316574_0107936 3300035398 Bacteria 1784
98 Ga0316582_0025720 3300036647 Bacteria 3537
99 Ga0316582_0131687 3300036647 Bacteria 1680
100 Ga0316584_0007561 3300036712 Bacteria 7444
101 Ga0316584_0017750 3300036712 Bacteria 5123
102 Ga0400483_086384 3300039062 Bacteria 5073
103 Ga0400483_113044 3300039062 Bacteria 29084
104 Ga0400483_121719 3300039062 Bacteria 2192
105 Ga0400483_141406 3300039062 Bacteria 39180
106 Ga0400483_150614 3300039062 Bacteria 8279
107 Ga0400483_166059 3300039062 Bacteria 1287
108 Ga0400483_234221 3300039062 Bacteria 62054
109 Ga0400483_248657 3300039062 Bacteria 6388
110 Ga0436365_0482887 3300039437 Bacteria 16518
111 Ga0436365_1599452 3300039437 Bacteria 1188
112 Ga0436365_1858838 3300039437 Bacteria 7255
113 Ga0436360_0826377 3300039438 Bacteria 6476
114 Ga0436361_0081310 3300039447 Bacteria 3562
115 Ga0436362_0184372 3300039453 Bacteria 5523
116 Ga0436362_0556141 3300039453 Bacteria 6784
117 Ga0466961_0025533 3300044693 Bacteria 3799
118 Ga0453684_0006714 3300044712 Bacteria 21692
119 Ga0466960_0067853 3300044901 Bacteria 1768
120 Ga0466959_0110098 3300045049 Bacteria 1966
121 Ga0466959_0139740 3300045049 Bacteria 1713
122 Ga0466958_0048496 3300045836 Bacteria 2567
123 Ga0495629_0281872 3300046459 Bacteria 1140
124 Ga0495582_0081495 3300046473 Bacteria 1797
125 Ga0495639_0069111 3300046475 Bacteria 1629
126 Ga0495630_0118405 3300046517 Bacteria 2009
127 Ga0495640_0020704 3300046533 Bacteria 4837
128 Ga0495613_0033744 3300046689 Bacteria 3801
129 Ga0495581_0084728 3300047315 Bacteria 1837
130 Ga0495680_0360143 3300047322 Unclassified 1011
131 Ga0496101_0002986 3300048904 Bacteria 10419
132 Ga0496101_0006711 3300048904 Bacteria 7422
133 Ga0496102_0075766 3300048905 Bacteria 3093
134 Ga0496102_0137622 3300048905 Bacteria 2288
135 Ga0496103_0045255 3300048906 Bacteria 2716
136 Ga0496104_0029735 3300048907 Bacteria 5070
137 Ga0496104_0031040 3300048907 Bacteria 4967
138 Ga0496105_0007638 3300048908 Bacteria 8380
139 Ga0496106_0140662 3300048909 Bacteria 1898
140 Ga0496107_0052036 3300048910 Bacteria 2954
141 Ga0496107_0200397 3300048910 Bacteria 1484
142 Ga0496107_0401713 3300048910 Bacteria 1019
143 Ga0496108_0112493 3300048911 Bacteria 2329
144 Ga0496108_0237136 3300048911 Bacteria 1586
145 Ga0496110_0031220 3300048913 Bacteria 4596
146 Ga0496110_0033479 3300048913 Bacteria 4445
147 Ga0496110_0395336 3300048913 Bacteria 1260
148 Ga0496111_0138576 3300048914 Bacteria 1802
149 Ga0496114_0026590 3300048917 Bacteria 4739
150 Ga0496114_0042606 3300048917 Bacteria 3763
151 Ga0496115_0030177 3300048918 Bacteria 4263
152 Ga0501032_0004792 3300049569 Bacteria 10144
153 Ga0501033_0154882 3300049570 Bacteria 1652
154 Ga0501034_0003176 3300049571 Bacteria 18899
155 Ga0501034_0010350 3300049571 Bacteria 9720
156 Ga0501034_0044679 3300049571 Bacteria 4479
157 Ga0501034_0047040 3300049571 Bacteria 4358
158 Ga0501036_0013528 3300049572 Bacteria 6784
159 Ga0501037_0024763 3300049573 Bacteria 4437
160 Ga0501038_0022420 3300049574 Bacteria 5659
161 Ga0501040_0026965 3300049576 Bacteria 3865
162 Ga0501046_0014552 3300049580 Bacteria 6632
163 Ga0501047_0040030 3300049581 Bacteria 4532
164 Ga0501047_0078672 3300049581 Bacteria 3171
165 Ga0501047_0094387 3300049581 Bacteria 2871
166 Ga0501068_0009068 3300049584 Bacteria 5552
167 Ga0501069_0000168 3300049585 Bacteria 29253
168 Ga0501070_0000030 3300049586 Bacteria 139270
169 Ga0501070_0001494 3300049586 Bacteria 20893
170 Ga0501070_0004183 3300049586 Bacteria 12424
171 Ga0501070_0016131 3300049586 Bacteria 6279
172 Ga0501071_0003037 3300049587 Bacteria 10392
173 Ga0501071_0012866 3300049587 Bacteria 5690
174 Ga0501071_0067406 3300049587 Bacteria 2603
175 Ga0501072_0047542 3300049588 Bacteria 3379
176 Ga0501072_0048315 3300049588 Bacteria 3351
177 Ga0501072_0061163 3300049588 Bacteria 2969
178 Ga0501073_0007561 3300049589 Bacteria 8073
179 Ga0501073_0136979 3300049589 Bacteria 1697
180 Ga0501074_0045319 3300049590 Bacteria 3182
181 Ga0501074_0059335 3300049590 Bacteria 2757
182 Ga0501079_0061323 3300049741 Bacteria 2901
183 Ga0501080_0001263 3300049742 Bacteria 21034
184 Ga0501080_0087134 3300049742 Bacteria 2900
185 Ga0501080_0268173 3300049742 Bacteria 1554
186 Ga0501083_0000155 3300049744 Bacteria 45460
187 Ga0501035_0045088 3300049822 Bacteria 3968
188 Ga0501044_0000676 3300049823 Bacteria 41239
189 nmdc:mga03n38_10061_c1 3300050490 Bacteria 3465
190 nmdc:mga00v17_3909_c1 3300050491 Bacteria 7684
191 nmdc:mga00v17_41629_c1 3300050491 Bacteria 2760
192 nmdc:mga00v17_78736_c1 3300050491 Bacteria 2054
193 nmdc:mga0yw44_333096_c1 3300050492 Bacteria 1020
194 nmdc:mga0yw44_4107_c1 3300050492 Bacteria 6603
195 nmdc:mga07m45_158240_c1 3300050496 Bacteria 1314
196 nmdc:mga05p37_18906_c1 3300050507 Bacteria 8330
197 nmdc:mga0qj67_124944_c1 3300050509 Bacteria 2082
198 nmdc:mga0qj67_324299_c1 3300050509 Bacteria 1247
199 nmdc:mga0qj67_345816_c1 3300050509 Bacteria 1203
200 nmdc:mga0qj67_74706_c1 3300050509 Bacteria 2709
201 nmdc:mga06r32_61666_c1 3300050510 Bacteria 3611
202 nmdc:mga08y16_14622_c1 3300050511 Bacteria 8255
203 nmdc:mga0n895_362984_c1 3300050512 Bacteria 1466
204 nmdc:mga0n895_43953_c1 3300050512 Bacteria 4356
205 nmdc:mga0rr50_364661_c1 3300050513 Bacteria 1216
206 Ga0500635_0002345 3300053080 Bacteria 4673
207 Ga0501084_0000314 3300054114 Bacteria 36782
208 Ga0501084_0058307 3300054114 Bacteria 3231
209 Ga0501082_0142395 3300060353 Bacteria 2081
210 Ga0501082_0160461 3300060353 Bacteria 1954
211 Ga0530510_0130028 3300061734 Bacteria 1852
212 Ga0075364_10005175
213 Ga0070680_100023992
214 Ga0070680_100113699
215 Ga0070660_100035820
216 Ga0070673_100077416
217 Ga0070667_100128649
218 Ga0070708_100012222
219 Ga0070678_100270080
220 Ga0070681_10086872
221 Ga0070681_10227173
222 Ga0068867_100004800
223 Ga0070684_100031014
224 Ga0070695_100003445
225 Ga0070696_100008172
226 Ga0068861_100078894
227 Ga0068858_100255209
228 Ga0068862_100245124
229 Ga0068862_100334530
230 Ga0081455_10029091
231 Ga0075368_10009726
232 Ga0075363_100009842
233 Ga0075363_100015639
234 Ga0075363_100038829
235 Ga0075363_100069378
236 Ga0075364_10005445
237 Ga0075367_10041054
238 Ga0075367_10045348
239 Ga0075428_100000110
240 Ga0075428_100075912
241 Ga0075430_100102988
242 Ga0075430_100224965
243 Ga0075429_100076552
244 Ga0075429_100095864
245 Ga0068865_100105990
246 Ga0111539_10053559
247 Ga0105245_10008047
248 Ga0114129_10886876
249 Ga0105242_10063696
250 Ga0105248_10135825
251 Ga0105248_10419687
252 Ga0157371_10117360
253 Ga0157369_10088720
254 Ga0157369_10261034
255 Ga0157378_10002711
256 Ga0163162_10154120
257 Ga0157372_10063245
258 Ga0157375_10067714
259 Ga0157375_10095147
260 Ga0163163_10079680
261 Ga0157379_10016840
262 Ga0206356_10576830
263 Ga0206354_10601165
264 Ga0206353_10933256
265 Ga0206353_11925843
266 Ga0213873_10019488
267 Ga0213876_10182308
268 Ga0207697_10055015
269 Ga0207705_10005798
270 Ga0207684_10305470
271 Ga0207707_10004266
272 Ga0207707_10057931
273 Ga0207707_10077816
274 Ga0207707_10155022
275 Ga0207660_10004617
276 Ga0207662_10234187
277 Ga0207657_10046241
278 Ga0207652_10001817
279 Ga0207652_10029936
280 Ga0207681_10179664
281 Ga0207659_10443952
282 Ga0207669_10066136
283 Ga0207669_10370265
284 Ga0207704_10093915
285 Ga0207651_10056597
286 Ga0207658_10127443
287 Ga0207703_10193832
288 Ga0207641_10013010
289 Ga0207648_10051306
290 Ga0207675_100031738
291 Ga0207683_10315623
292 Ga0207428_10076377
293 Ga0268265_10188932
294 Ga0265338_10114450
295 Ga0265338_10217773
296 Ga0265327_10004127
297 Ga0265327_10078398
298 Ga0316576_10007601
299 Ga0316576_10054549
300 Ga0316578_10004395
301 Ga0316578_10013292
302 Ga0316577_10033242
303 Ga0316585_10007915
304 Ga0316580_10013765
305 Ga0316574_0010229
306 Ga0316574_0011011
307 Ga0316574_0016692
308 Ga0316574_0107936
309 Ga0316582_0025720
310 Ga0316582_0131687
311 Ga0316584_0007561
312 Ga0316584_0017750
313 Ga0400483_086384
314 Ga0400483_113044
315 Ga0400483_121719
316 Ga0400483_141406
317 Ga0400483_150614
318 Ga0400483_166059
319 Ga0400483_234221
320 Ga0400483_248657
321 Ga0436365_0482887
322 Ga0436365_1599452
323 Ga0436365_1858838
324 Ga0436360_0826377
325 Ga0436361_0081310
326 Ga0436362_0184372
327 Ga0436362_0556141
328 Ga0466961_0025533
329 Ga0453684_0006714
330 Ga0466960_0067853
331 Ga0466959_0110098
332 Ga0466959_0139740
333 Ga0466958_0048496
334 Ga0495629_0281872
335 Ga0495582_0081495
336 Ga0495639_0069111
337 Ga0495630_0118405
338 Ga0495640_0020704
339 Ga0495613_0033744
340 Ga0495581_0084728
341 Ga0495680_0360143
342 Ga0496101_0002986
343 Ga0496101_0006711
344 Ga0496102_0075766
345 Ga0496102_0137622
346 Ga0496103_0045255
347 Ga0496104_0029735
348 Ga0496104_0031040
349 Ga0496105_0007638
350 Ga0496106_0140662
351 Ga0496107_0052036
352 Ga0496107_0200397
353 Ga0496107_0401713
354 Ga0496108_0112493
355 Ga0496108_0237136
356 Ga0496110_0031220
357 Ga0496110_0033479
358 Ga0496110_0395336
359 Ga0496111_0138576
360 Ga0496114_0026590
361 Ga0496114_0042606
362 Ga0496115_0030177
363 Ga0501032_0004792
364 Ga0501033_0154882
365 Ga0501034_0003176
366 Ga0501034_0010350
367 Ga0501034_0044679
368 Ga0501034_0047040
369 Ga0501036_0013528
370 Ga0501037_0024763
371 Ga0501038_0022420
372 Ga0501040_0026965
373 Ga0501046_0014552
374 Ga0501047_0040030
375 Ga0501047_0078672
376 Ga0501047_0094387
377 Ga0501068_0009068
378 Ga0501069_0000168
379 Ga0501070_0000030
380 Ga0501070_0001494
381 Ga0501070_0004183
382 Ga0501070_0016131
383 Ga0501071_0003037
384 Ga0501071_0012866
385 Ga0501071_0067406
386 Ga0501072_0047542
387 Ga0501072_0048315
388 Ga0501072_0061163
389 Ga0501073_0007561
390 Ga0501073_0136979
391 Ga0501074_0045319
392 Ga0501074_0059335
393 Ga0501079_0061323
394 Ga0501080_0001263
395 Ga0501080_0087134
396 Ga0501080_0268173
397 Ga0501083_0000155
398 Ga0501035_0045088
399 Ga0501044_0000676
400 nmdc:mga03n38_10061_c1
401 nmdc:mga00v17_3909_c1
402 nmdc:mga00v17_41629_c1
403 nmdc:mga00v17_78736_c1
404 nmdc:mga0yw44_333096_c1
405 nmdc:mga0yw44_4107_c1
406 nmdc:mga07m45_158240_c1
407 nmdc:mga05p37_18906_c1
408 nmdc:mga0qj67_124944_c1
409 nmdc:mga0qj67_324299_c1
410 nmdc:mga0qj67_345816_c1
411 nmdc:mga0qj67_74706_c1
412 nmdc:mga06r32_61666_c1
413 nmdc:mga08y16_14622_c1
414 nmdc:mga0n895_362984_c1
415 nmdc:mga0n895_43953_c1
416 nmdc:mga0rr50_364661_c1
417 Ga0500635_0002345
418 Ga0501084_0000314
419 Ga0501084_0058307
420 Ga0501082_0142395
421 Ga0501082_0160461
422 Ga0530510_0130028

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22082

TtuA_LIM_N

2-thiouridine synthetase TtuA, N-terminal LIM domain

2

27

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
5gha-assembly1.cif.gz_A sulfur transferase ttua in complex with sulfur carrier ttub 0.9596 3 303
5gha-assembly2.cif.gz_C sulfur transferase ttua in complex with sulfur carrier ttub 0.9563 3 303
5mko-assembly1.cif.gz_A [2fe-2s] cluster containing ttua in complex with amp. 0.9553 1 301
5mko-assembly1.cif.gz_B [2fe-2s] cluster containing ttua in complex with amp. 0.9523 1 301
5b4f-assembly1.cif.gz_A-2 sulfur transferase ttua in complex with iron sulfur cluster 0.9469 3 303
ID Description Score Start End Superfamily
5ghaC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9563 3 303 3.40.50.620
5mkpA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9346 1 304 3.40.50.620
af_Q5AML2_30_291_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9027 11 265 3.40.50.620
af_A0A1D6HL54_20_239_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8926 3 217 3.40.50.620
5mkpA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8847 1 304 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A7K0JVF9-F1-model_v4 deleted 0.9799 43 305
AF-A0A7V1I425-F1-model_v4 tRNA 2-thiocytidine biosynthesis protein TtcA 0.9798 1 264 GO:0000049
GO:0002143
GO:0002144
GO:0005524
AF-A0A6I3WZW6-F1-model_v4 tRNA(Ile)-lysidine synthetase 0.9788 14 303 GO:0000049
GO:0002143
GO:0002144
GO:0005524
AF-A0A2E4SXV4-F1-model_v4 tRNA(Ile)-lysidine synthetase 0.9774 1 156 GO:0000049
GO:0002143
GO:0002144
AF-A0A7K0JVF9-F1-model_v4 deleted 0.9761 43 305

Map