F321378

General Info

Members Datasets Scaffolds Average Seq Length
211 133 422 240

Family's Representative Sequence

Representative Sequence 3300005539|Ga0068853_100912852|Ga0068853_1009128521
Length 223
Sequence VRLKLTVEYDGTGFRGWARQPEGRTVERELRRALDQLYGAATGLAVAGRTDTGVHALANVVSVDVEGGPPPARAAEALNAALPDDLAVVRAEQAPDAFHARFDARSALEATRALWWPRLFDVAAADASAQALLGEHDFRAFTPTDTRHKVFVRVVKQVRWVELDDGVAVFEITADSFLRHMVRTLVGTMLEGRELEPLLEGRPRSEAGATAPPHGLYLTHVTY

Samples

Sample ID Description Type Environment
1 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
31 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
35 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
55 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
56 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
57 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
58 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
59 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
60 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
61 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
62 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
67 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
68 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
69 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
76 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
77 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
78 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
79 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
80 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
81 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
87 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
88 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
89 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
90 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
93 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
96 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
97 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
98 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
99 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
100 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
101 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
102 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
103 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
104 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
105 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
106 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
107 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
108 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
109 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
112 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
113 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
114 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
115 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
116 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
117 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
118 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
121 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
122 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
123 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
127 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
128 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
129 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
130 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
131 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
132 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
133 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.63
Metatranscriptomes 2.37
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 7.11
Rhizosphere 91.94
Stem 0
Stem Tuber 0
Unclassified 10.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068853_100912852 3300005539 Bacteria 844
2 Ga0070658_10410945 3300005327 Bacteria 1163
3 Ga0070658_10614137 3300005327 Bacteria 943
4 Ga0070682_100150649 3300005337 Bacteria 1596
5 Ga0070660_100009399 3300005339 Bacteria 6873
6 Ga0070660_100148859 3300005339 Bacteria 1882
7 Ga0070661_100033277 3300005344 Bacteria 3733
8 Ga0070661_100134262 3300005344 Bacteria 1861
9 Ga0070659_100111298 3300005366 Bacteria 2211
10 Ga0070659_100143605 3300005366 Bacteria 1944
11 Ga0070714_100410336 3300005435 Bacteria 1282
12 Ga0070714_100528110 3300005435 Bacteria 1128
13 Ga0070714_100718379 3300005435 Bacteria 965
14 Ga0070711_100027002 3300005439 Bacteria 3766
15 Ga0070681_10095572 3300005458 Bacteria 2920
16 Ga0070681_10225546 3300005458 Bacteria 1788
17 Ga0070706_100083045 3300005467 Bacteria 2967
18 Ga0070699_100762672 3300005518 Bacteria 885
19 Ga0070679_100047498 3300005530 Bacteria 4279
20 Ga0070679_100057486 3300005530 Bacteria 3877
21 Ga0070679_100243134 3300005530 Unclassified 1757
22 Ga0070679_100345126 3300005530 Bacteria 1437
23 Ga0070679_100648280 3300005530 Bacteria 999
24 Ga0070684_100060538 3300005535 Bacteria 3312
25 Ga0070684_100346767 3300005535 Bacteria 1365
26 Ga0070684_100575930 3300005535 Bacteria 1046
27 Ga0068853_100397983 3300005539 Bacteria 1289
28 Ga0070686_100128856 3300005544 Unclassified 1747
29 Ga0070665_100068379 3300005548 Bacteria 3561
30 Ga0068855_100132521 3300005563 Bacteria 2845
31 Ga0068855_100182549 3300005563 Bacteria 2371
32 Ga0068855_100364482 3300005563 Bacteria 1590
33 Ga0068855_100471482 3300005563 Bacteria 1367
34 Ga0070664_100320258 3300005564 Bacteria 1405
35 Ga0068857_100078809 3300005577 Bacteria 2940
36 Ga0068857_100098335 3300005577 Bacteria 2625
37 Ga0068857_100723714 3300005577 Bacteria 947
38 Ga0070717_10162053 3300006028 Bacteria 1940
39 Ga0070716_100523374 3300006173 Unclassified 879
40 Ga0075435_100018009 3300007076 Bacteria 5357
41 Ga0105240_10078072 3300009093 Bacteria 4078
42 Ga0105240_10168570 3300009093 Bacteria 2595
43 Ga0114129_10140543 3300009147 Bacteria 3310
44 Ga0105248_10200767 3300009177 Bacteria 2247
45 Ga0105238_10093494 3300009551 Bacteria 2995
46 Ga0157373_10375755 3300013100 Bacteria 1016
47 Ga0157370_10061947 3300013104 Bacteria 3550
48 Ga0157370_10180649 3300013104 Bacteria 1961
49 Ga0157370_10257957 3300013104 Bacteria 1611
50 Ga0157369_10024249 3300013105 Bacteria 6751
51 Ga0157369_10087505 3300013105 Bacteria 3326
52 Ga0157369_10224684 3300013105 Bacteria 1964
53 Ga0157369_10523032 3300013105 Bacteria 1227
54 Ga0157369_10601850 3300013105 Bacteria 1135
55 Ga0157372_10158571 3300013307 Bacteria 2614
56 Ga0157372_10467477 3300013307 Bacteria 1470
57 Ga0157372_10472618 3300013307 Bacteria 1461
58 Ga0157375_10047629 3300013308 Bacteria 4188
59 Ga0197907_10414753 3300020069 Bacteria 1605
60 Ga0206354_10088693 3300020081 Bacteria 1216
61 Ga0206353_10167500 3300020082 Bacteria 4116
62 Ga0206353_11285241 3300020082 Bacteria 1885
63 Ga0206353_11675575 3300020082 Bacteria 1380
64 Ga0213876_10170426 3300021384 Unclassified 1158
65 Ga0207692_10160595 3300025898 Bacteria 1295
66 Ga0207705_10137992 3300025909 Bacteria 1819
67 Ga0207705_10405403 3300025909 Bacteria 1055
68 Ga0207684_10056160 3300025910 Bacteria 3340
69 Ga0207707_10023859 3300025912 Bacteria 5350
70 Ga0207707_10130255 3300025912 Bacteria 2200
71 Ga0207707_10137508 3300025912 Bacteria 2136
72 Ga0207695_10099742 3300025913 Bacteria 2901
73 Ga0207695_10151755 3300025913 Unclassified 2256
74 Ga0207671_10165845 3300025914 Bacteria 1713
75 Ga0207660_10133853 3300025917 Bacteria 1889
76 Ga0207657_10020324 3300025919 Bacteria 6277
77 Ga0207657_10070674 3300025919 Bacteria 2958
78 Ga0207657_10174287 3300025919 Unclassified 1741
79 Ga0207657_10266466 3300025919 Bacteria 1362
80 Ga0207649_10059925 3300025920 Bacteria 2390
81 Ga0207652_10003780 3300025921 Bacteria 12400
82 Ga0207652_10180458 3300025921 Unclassified 1897
83 Ga0207664_10162735 3300025929 Bacteria 1904
84 Ga0207690_10059320 3300025932 Bacteria 2592
85 Ga0207711_10179464 3300025941 Bacteria 1925
86 Ga0207661_10634818 3300025944 Bacteria 981
87 Ga0207667_10083868 3300025949 Bacteria 3299
88 Ga0207667_10198955 3300025949 Bacteria 2056
89 Ga0207667_10473000 3300025949 Bacteria 1272
90 Ga0207667_10598322 3300025949 Bacteria 1112
91 Ga0207667_11099651 3300025949 Bacteria 778
92 Ga0207658_10021619 3300025986 Bacteria 4469
93 Ga0207639_10272704 3300026041 Bacteria 1485
94 Ga0207674_10023944 3300026116 Bacteria 6530
95 Ga0207674_10119230 3300026116 Bacteria 2608
96 Ga0207674_10539179 3300026116 Bacteria 1127
97 Ga0268266_10525320 3300028379 Bacteria 1132
98 Ga0265319_1037532 3300028563 Bacteria 1651
99 Ga0265318_10009093 3300028577 Bacteria 4390
100 Ga0265323_10054069 3300028653 Bacteria 1416
101 Ga0265338_10103750 3300028800 Bacteria 2308
102 Ga0265325_10026914 3300031241 Bacteria 3112
103 Ga0265329_10022774 3300031242 Bacteria 2092
104 Ga0265339_10039430 3300031249 Bacteria 2630
105 Ga0265331_10051800 3300031250 Bacteria 1964
106 Ga0265327_10033911 3300031251 Bacteria 2838
107 Ga0265316_10021513 3300031344 Bacteria 5460
108 Ga0265313_10007653 3300031595 Bacteria 7323
109 Ga0265314_10023971 3300031711 Bacteria 4637
110 Ga0373943_0413543 3300035170 Bacteria 780
111 Ga0373955_0032979 3300035172 Bacteria 2724
112 Ga0373933_0284434 3300035724 Unclassified 1069
113 Ga0373937_0027040 3300036401 Bacteria 5185
114 Ga0395900_0082696 3300037418 Bacteria 3299
115 Ga0395900_0114632 3300037418 Bacteria 2766
116 Ga0395900_0431110 3300037418 Bacteria 1277
117 Ga0395898_0025420 3300037466 Bacteria 5966
118 Ga0395898_0137885 3300037466 Bacteria 2335
119 Ga0395898_0223655 3300037466 Unclassified 1795
120 Ga0395898_0245690 3300037466 Bacteria 1707
121 Ga0395898_0375899 3300037466 Bacteria 1355
122 Ga0395905_0025852 3300037471 Bacteria 5533
123 Ga0395901_0001204 3300038443 Bacteria 27493
124 Ga0395901_0109834 3300038443 Bacteria 2895
125 Ga0395901_0124351 3300038443 Bacteria 2710
126 Ga0395901_0648152 3300038443 Bacteria 1060
127 Ga0436365_1657328 3300039437 Bacteria 1875
128 Ga0466969_0034554 3300044656 Bacteria 2561
129 Ga0466966_0105133 3300044684 Bacteria 1743
130 Ga0466961_0041061 3300044693 Bacteria 2965
131 Ga0466961_0302823 3300044693 Bacteria 976
132 Ga0466963_0006939 3300044694 Bacteria 6738
133 Ga0466963_0108611 3300044694 Bacteria 1903
134 Ga0466963_0118080 3300044694 Bacteria 1824
135 Ga0466963_0173418 3300044694 Bacteria 1504
136 Ga0466964_0005615 3300044706 Bacteria 4661
137 Ga0466964_0037854 3300044706 Unclassified 1938
138 Ga0466971_0028337 3300044719 Bacteria 2506
139 Ga0466971_0036589 3300044719 Bacteria 2201
140 Ga0466968_0025706 3300044735 Bacteria 2413
141 Ga0466968_0117687 3300044735 Bacteria 1200
142 Ga0466970_0060803 3300044765 Bacteria 2023
143 Ga0466970_0199997 3300044765 Bacteria 1112
144 Ga0466957_0000919 3300044842 Bacteria 15079
145 Ga0466957_0016592 3300044842 Bacteria 4307
146 Ga0466959_0037704 3300045049 Bacteria 3572
147 Ga0466959_0106594 3300045049 Bacteria 2003
148 Ga0466958_0000980 3300045836 Bacteria 12902
149 Ga0466958_0036545 3300045836 Bacteria 2941
150 Ga0466967_0006265 3300045976 Bacteria 8391
151 Ga0466967_0008256 3300045976 Bacteria 7605
152 Ga0466967_0034604 3300045976 Bacteria 4290
153 Ga0466967_0053233 3300045976 Bacteria 3556
154 Ga0466967_0292837 3300045976 Bacteria 1564
155 Ga0466967_0525329 3300045976 Unclassified 1163
156 Ga0466967_0651936 3300045976 Bacteria 1041
157 Ga0466967_0665034 3300045976 Bacteria 1030
158 Ga0466967_1183929 3300045976 Bacteria 761
159 Ga0495592_0114740 3300046454 Unclassified 1902
160 Ga0495653_0039247 3300046463 Bacteria 3710
161 Ga0495608_0018480 3300046511 Bacteria 4808
162 Ga0495618_0180390 3300046514 Unclassified 1342
163 Ga0495652_0107858 3300046529 Bacteria 2246
164 Ga0495652_0129750 3300046529 Unclassified 1997
165 Ga0495640_0118276 3300046533 Unclassified 1725
166 Ga0495587_0021953 3300046536 Bacteria 3934
167 Ga0495645_0120768 3300046543 Unclassified 1845
168 Ga0495667_0012097 3300046559 Bacteria 5845
169 Ga0495635_0076743 3300046663 Bacteria 2290
170 Ga0495657_0028235 3300046675 Bacteria 3949
171 Ga0495599_0069761 3300046678 Unclassified 2193
172 Ga0495623_0276575 3300046679 Unclassified 936
173 Ga0495604_0104955 3300047317 Bacteria 2069
174 Ga0495680_0106516 3300047322 Bacteria 2083
175 Ga0495675_0117686 3300047444 Unclassified 1656
176 Ga0495684_0016275 3300047471 Bacteria 5726
177 Ga0495602_0276668 3300048088 Unclassified 1238
178 Ga0496100_0115402 3300048903 Bacteria 1872
179 Ga0496101_0123935 3300048904 Bacteria 1956
180 Ga0496102_0453877 3300048905 Unclassified 1202
181 Ga0496103_0254670 3300048906 Bacteria 1130
182 Ga0496104_0289915 3300048907 Bacteria 1549
183 Ga0496105_0015821 3300048908 Bacteria 6017
184 Ga0496108_0271947 3300048911 Bacteria 1475
185 Ga0496109_0274749 3300048912 Bacteria 1588
186 Ga0496110_0130808 3300048913 Bacteria 2266
187 Ga0496111_0109171 3300048914 Bacteria 2037
188 Ga0496112_0036539 3300048915 Bacteria 4792
189 Ga0496112_0045922 3300048915 Bacteria 4282
190 Ga0496113_0688319 3300048916 Bacteria 816
191 Ga0496114_0665942 3300048917 Bacteria 914
192 Ga0496115_0059418 3300048918 Bacteria 3079
193 Ga0501047_0059298 3300049581 Bacteria 3695
194 Ga0501047_0120209 3300049581 Bacteria 2509
195 Ga0501047_0344787 3300049581 Bacteria 1327
196 Ga0501067_0003763 3300049583 Bacteria 8362
197 Ga0501069_0002252 3300049585 Bacteria 9730
198 Ga0501070_0008023 3300049586 Bacteria 8941
199 Ga0501070_0069654 3300049586 Bacteria 2912
200 Ga0501070_0309805 3300049586 Bacteria 1285
201 Ga0501074_0002137 3300049590 Bacteria 13665
202 Ga0501080_0231727 3300049742 Bacteria 1688
203 Ga0501044_0158391 3300049823 Bacteria 2243
204 nmdc:mga0a205_295896_c1 3300050515 Bacteria 1492
205 Ga0495601_0135345 3300053077 Unclassified 1606
206 Ga0495612_0036382 3300053078 Bacteria 1998
207 Ga0495655_0003040 3300053083 Bacteria 2723
208 Ga0495595_0010440 3300053084 Bacteria 3858
209 Ga0495619_0013521 3300053085 Bacteria 5142
210 Ga0466962_0018707 3300061719 Bacteria 3331
211 Ga0530510_0024659 3300061734 Bacteria 4295
212 Ga0068853_100912852
213 Ga0070658_10410945
214 Ga0070658_10614137
215 Ga0070682_100150649
216 Ga0070660_100009399
217 Ga0070660_100148859
218 Ga0070661_100033277
219 Ga0070661_100134262
220 Ga0070659_100111298
221 Ga0070659_100143605
222 Ga0070714_100410336
223 Ga0070714_100528110
224 Ga0070714_100718379
225 Ga0070711_100027002
226 Ga0070681_10095572
227 Ga0070681_10225546
228 Ga0070706_100083045
229 Ga0070699_100762672
230 Ga0070679_100047498
231 Ga0070679_100057486
232 Ga0070679_100243134
233 Ga0070679_100345126
234 Ga0070679_100648280
235 Ga0070684_100060538
236 Ga0070684_100346767
237 Ga0070684_100575930
238 Ga0068853_100397983
239 Ga0070686_100128856
240 Ga0070665_100068379
241 Ga0068855_100132521
242 Ga0068855_100182549
243 Ga0068855_100364482
244 Ga0068855_100471482
245 Ga0070664_100320258
246 Ga0068857_100078809
247 Ga0068857_100098335
248 Ga0068857_100723714
249 Ga0070717_10162053
250 Ga0070716_100523374
251 Ga0075435_100018009
252 Ga0105240_10078072
253 Ga0105240_10168570
254 Ga0114129_10140543
255 Ga0105248_10200767
256 Ga0105238_10093494
257 Ga0157373_10375755
258 Ga0157370_10061947
259 Ga0157370_10180649
260 Ga0157370_10257957
261 Ga0157369_10024249
262 Ga0157369_10087505
263 Ga0157369_10224684
264 Ga0157369_10523032
265 Ga0157369_10601850
266 Ga0157372_10158571
267 Ga0157372_10467477
268 Ga0157372_10472618
269 Ga0157375_10047629
270 Ga0197907_10414753
271 Ga0206354_10088693
272 Ga0206353_10167500
273 Ga0206353_11285241
274 Ga0206353_11675575
275 Ga0213876_10170426
276 Ga0207692_10160595
277 Ga0207705_10137992
278 Ga0207705_10405403
279 Ga0207684_10056160
280 Ga0207707_10023859
281 Ga0207707_10130255
282 Ga0207707_10137508
283 Ga0207695_10099742
284 Ga0207695_10151755
285 Ga0207671_10165845
286 Ga0207660_10133853
287 Ga0207657_10020324
288 Ga0207657_10070674
289 Ga0207657_10174287
290 Ga0207657_10266466
291 Ga0207649_10059925
292 Ga0207652_10003780
293 Ga0207652_10180458
294 Ga0207664_10162735
295 Ga0207690_10059320
296 Ga0207711_10179464
297 Ga0207661_10634818
298 Ga0207667_10083868
299 Ga0207667_10198955
300 Ga0207667_10473000
301 Ga0207667_10598322
302 Ga0207667_11099651
303 Ga0207658_10021619
304 Ga0207639_10272704
305 Ga0207674_10023944
306 Ga0207674_10119230
307 Ga0207674_10539179
308 Ga0268266_10525320
309 Ga0265319_1037532
310 Ga0265318_10009093
311 Ga0265323_10054069
312 Ga0265338_10103750
313 Ga0265325_10026914
314 Ga0265329_10022774
315 Ga0265339_10039430
316 Ga0265331_10051800
317 Ga0265327_10033911
318 Ga0265316_10021513
319 Ga0265313_10007653
320 Ga0265314_10023971
321 Ga0373943_0413543
322 Ga0373955_0032979
323 Ga0373933_0284434
324 Ga0373937_0027040
325 Ga0395900_0082696
326 Ga0395900_0114632
327 Ga0395900_0431110
328 Ga0395898_0025420
329 Ga0395898_0137885
330 Ga0395898_0223655
331 Ga0395898_0245690
332 Ga0395898_0375899
333 Ga0395905_0025852
334 Ga0395901_0001204
335 Ga0395901_0109834
336 Ga0395901_0124351
337 Ga0395901_0648152
338 Ga0436365_1657328
339 Ga0466969_0034554
340 Ga0466966_0105133
341 Ga0466961_0041061
342 Ga0466961_0302823
343 Ga0466963_0006939
344 Ga0466963_0108611
345 Ga0466963_0118080
346 Ga0466963_0173418
347 Ga0466964_0005615
348 Ga0466964_0037854
349 Ga0466971_0028337
350 Ga0466971_0036589
351 Ga0466968_0025706
352 Ga0466968_0117687
353 Ga0466970_0060803
354 Ga0466970_0199997
355 Ga0466957_0000919
356 Ga0466957_0016592
357 Ga0466959_0037704
358 Ga0466959_0106594
359 Ga0466958_0000980
360 Ga0466958_0036545
361 Ga0466967_0006265
362 Ga0466967_0008256
363 Ga0466967_0034604
364 Ga0466967_0053233
365 Ga0466967_0292837
366 Ga0466967_0525329
367 Ga0466967_0651936
368 Ga0466967_0665034
369 Ga0466967_1183929
370 Ga0495592_0114740
371 Ga0495653_0039247
372 Ga0495608_0018480
373 Ga0495618_0180390
374 Ga0495652_0107858
375 Ga0495652_0129750
376 Ga0495640_0118276
377 Ga0495587_0021953
378 Ga0495645_0120768
379 Ga0495667_0012097
380 Ga0495635_0076743
381 Ga0495657_0028235
382 Ga0495599_0069761
383 Ga0495623_0276575
384 Ga0495604_0104955
385 Ga0495680_0106516
386 Ga0495675_0117686
387 Ga0495684_0016275
388 Ga0495602_0276668
389 Ga0496100_0115402
390 Ga0496101_0123935
391 Ga0496102_0453877
392 Ga0496103_0254670
393 Ga0496104_0289915
394 Ga0496105_0015821
395 Ga0496108_0271947
396 Ga0496109_0274749
397 Ga0496110_0130808
398 Ga0496111_0109171
399 Ga0496112_0036539
400 Ga0496112_0045922
401 Ga0496113_0688319
402 Ga0496114_0665942
403 Ga0496115_0059418
404 Ga0501047_0059298
405 Ga0501047_0120209
406 Ga0501047_0344787
407 Ga0501067_0003763
408 Ga0501069_0002252
409 Ga0501070_0008023
410 Ga0501070_0069654
411 Ga0501070_0309805
412 Ga0501074_0002137
413 Ga0501080_0231727
414 Ga0501044_0158391
415 nmdc:mga0a205_295896_c1
416 Ga0495601_0135345
417 Ga0495612_0036382
418 Ga0495655_0003040
419 Ga0495595_0010440
420 Ga0495619_0013521
421 Ga0466962_0018707
422 Ga0530510_0024659

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

128

223

0.94

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

5

103

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9276 2 236
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.92 2 236
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9126 2 236
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9052 2 236
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.8889 2 236
ID Description Score Start End Superfamily
1vs3B01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9476 2 103 3.30.70.580
2nqpB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9417 2 103 3.30.70.580
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9273 1 102 3.30.70.580
af_P9WHP9_20_139_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9148 2 103 3.30.70.580
1vs3B01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.913 2 103 3.30.70.580
ID Description Score Start End GO Terms
AF-A0A7C6QDS0-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9438 2 236 GO:0003723
GO:0031119
GO:0160147
AF-A0A7C6F4U9-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.943 2 236 GO:0003723
GO:0031119
GO:0160147
AF-A0A535YSE2-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9422 1 190 GO:0003723
GO:0031119
GO:0160147
AF-A0A2N1R6S6-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9409 2 199 GO:0003723
GO:0031119
GO:0160147
AF-A0A7T9JHB1-F1-model_v4 deleted 0.9407 1 236

Map