F319884

General Info

Members Datasets Scaffolds Average Seq Length
210 167 420 329

Family's Representative Sequence

Representative Sequence 3300005288|Ga0065714_10064850|Ga0065714_1006485018
Length 352
Sequence MFVLSYSPRSMMKQAINAVDFPKSLADFLTKYLPAERGMSNNTIASYRMTFILLITFMEEYKGIKPQKLVFSDLTKACIVDFLNHLEQVRKCSVSTRNVRLAALHTFFKFVQYEWPEQLEECRSILSIKVKKAQRSTINYLSVDGIRLLLNQPDLTTRQGIRDLALLALMYDTGARVQEIIDLTPENIRLNKPCTIKLIGKGNKSRIVPLMDAEVGHLKNYMAKNRLLEAHAGTYPLFYNTRREKLTRAGVTHIFHKYATIARNSNKLLIPEKISCHSLRHSKAMHLLQAGVNLVYIRDILGHTSVTTTEAYARADSKQKREAIEGAYVNVVEKEVPIWVDNESLLDWLKNF

Samples

Sample ID Description Type Environment
1 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
17 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
18 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
19 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
20 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
24 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
35 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
38 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
39 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
56 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
57 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
58 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
59 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
60 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
61 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
62 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
63 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
64 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
65 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
66 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
67 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
68 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
69 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
70 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
71 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
76 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
77 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
78 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
79 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
80 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
81 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
82 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
83 3300042124 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_082716_2423 Metagenome Rhizosphere
84 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
85 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
86 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
91 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
92 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
93 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
94 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
95 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
96 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
97 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
98 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
99 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
100 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
101 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
102 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
103 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
104 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
105 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
106 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
107 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
108 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
109 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
110 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
111 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
112 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
113 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
114 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
117 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
118 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
119 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
120 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
121 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
122 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
123 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
124 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
125 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
126 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
127 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
128 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
129 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
130 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
131 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
132 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
133 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
134 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
135 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
136 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
137 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
138 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
139 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
140 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049687 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought Metagenome Rhizosphere
142 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
143 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
144 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
145 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
146 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
147 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
148 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
149 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
150 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
151 3300053144 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 endosphere Metagenome Endosphere
152 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
153 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
154 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
155 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
156 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
157 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
158 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
159 2738543023 Pedobacter sp. OK628 Isolate Unclassified
160 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
161 2818991437 Pedobacter terrae 518 Isolate Unclassified
162 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
163 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
164 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
165 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
166 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
167 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.81
Metatranscriptomes 0.48
Isolates 5.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.14
Nodule 1.9
Rhizoplane 1.9
Rhizosphere 79.05
Stem 0
Stem Tuber 0
Unclassified 10

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065714_10064850 3300005288 Bacteria 17027
2 Ga0006562J51391_1002202 3300003578 Bacteria 3420
3 Ga0070683_100345194 3300005329 Unclassified 1418
4 Ga0070680_100162768 3300005336 Bacteria 1875
5 Ga0070689_100132739 3300005340 Unclassified 1997
6 Ga0070671_100046651 3300005355 Bacteria 3603
7 Ga0070674_100003248 3300005356 Bacteria 9074
8 Ga0070708_100515885 3300005445 Bacteria 1127
9 Ga0070663_100165771 3300005455 Bacteria 1704
10 Ga0070678_100324872 3300005456 Unclassified 1315
11 Ga0070681_10062268 3300005458 Unclassified 3704
12 Ga0068867_100029581 3300005459 Bacteria 3947
13 Ga0070679_100068840 3300005530 Bacteria 3530
14 Ga0070679_100236462 3300005530 Bacteria 1785
15 Ga0070679_100291979 3300005530 Bacteria 1582
16 Ga0070665_100497259 3300005548 Bacteria 1230
17 Ga0070664_100037928 3300005564 Bacteria 4053
18 Ga0068866_10040411 3300005718 Bacteria 2309
19 Ga0075433_10093023 3300006852 Bacteria 2667
20 Ga0075434_100005877 3300006871 Bacteria 11212
21 Ga0105251_10023928 3300009011 Bacteria 3145
22 Ga0105251_10053776 3300009011 Bacteria 1913
23 Ga0105244_10011646 3300009036 Bacteria 5254
24 Ga0105240_10002612 3300009093 Bacteria 28788
25 Ga0105240_10041903 3300009093 Bacteria 5838
26 Ga0105240_10540124 3300009093 Bacteria 1291
27 Ga0114129_10044808 3300009147 Bacteria 6222
28 Ga0114129_10076693 3300009147 Unclassified 4653
29 Ga0105242_10043436 3300009176 Unclassified 3636
30 Ga0105248_10070574 3300009177 Bacteria 3923
31 Ga0105237_10070169 3300009545 Bacteria 3499
32 Ga0105237_10247560 3300009545 Bacteria 1784
33 Ga0105238_10100293 3300009551 Bacteria 2879
34 Ga0105239_10053752 3300010375 Bacteria 4417
35 Ga0157371_10188074 3300013102 Bacteria 1478
36 Ga0157370_10151279 3300013104 Unclassified 2159
37 Ga0163162_10041448 3300013306 Bacteria 4607
38 Ga0157372_10063357 3300013307 Bacteria 4145
39 Ga0157372_10081451 3300013307 Bacteria 3664
40 Ga0157375_10354203 3300013308 Bacteria 1634
41 Ga0157375_10400460 3300013308 Bacteria 1539
42 Ga0163163_10165052 3300014325 Bacteria 2261
43 Ga0157379_10031539 3300014968 Unclassified 4722
44 Ga0157379_10224768 3300014968 Unclassified 1701
45 Ga0182006_1005450 3300015261 Bacteria 6069
46 Ga0213875_10028094 3300021388 Bacteria 2675
47 Ga0207427_106002 3300025231 Bacteria 1603
48 Ga0209233_1000485 3300025261 Bacteria 24300
49 Ga0207655_1011501 3300025728 Bacteria 5261
50 Ga0207707_10010829 3300025912 Bacteria 7925
51 Ga0207707_10046639 3300025912 Unclassified 3775
52 Ga0207695_10002509 3300025913 Bacteria 26973
53 Ga0207695_10095723 3300025913 Bacteria 2972
54 Ga0207671_10040562 3300025914 Bacteria 3446
55 Ga0207671_10194470 3300025914 Bacteria 1582
56 Ga0207663_10262960 3300025916 Bacteria 1275
57 Ga0207652_10123651 3300025921 Bacteria 2304
58 Ga0207652_10297857 3300025921 Bacteria 1456
59 Ga0207652_10365805 3300025921 Bacteria 1302
60 Ga0207644_10018335 3300025931 Bacteria 4733
61 Ga0207670_10048488 3300025936 Unclassified 2835
62 Ga0207669_10062588 3300025937 Bacteria 2292
63 Ga0207704_10271456 3300025938 Unclassified 1284
64 Ga0207679_10034250 3300025945 Bacteria 3581
65 Ga0207651_10031780 3300025960 Bacteria 3380
66 Ga0207678_10169399 3300026067 Bacteria 1865
67 Ga0207648_10007212 3300026089 Bacteria 10960
68 Ga0207683_10031916 3300026121 Bacteria 4574
69 Ga0209588_1071364 3300027671 Bacteria 1121
70 Ga0265337_1015319 3300028556 Bacteria 2512
71 Ga0265318_10046391 3300028577 Unclassified 1640
72 Ga0307515_10043089 3300028794 Bacteria 7031
73 Ga0307515_10081647 3300028794 Bacteria 4195
74 Ga0265324_10007166 3300029957 Bacteria 4555
75 Ga0265325_10008205 3300031241 Bacteria 6182
76 Ga0265340_10013983 3300031247 Bacteria 4205
77 Ga0265316_10108764 3300031344 Unclassified 2101
78 Ga0307513_10005112 3300031456 Bacteria 17365
79 Ga0307513_10140835 3300031456 Bacteria 2339
80 Ga0307514_10008267 3300031649 Bacteria 8878
81 Ga0316579_10071176 3300031691 Unclassified 1648
82 Ga0316576_10035009 3300031727 Bacteria 3582
83 Ga0316578_10026924 3300031728 Bacteria 3245
84 Ga0316578_10132554 3300031728 Bacteria 1500
85 Ga0316577_10030277 3300031733 Bacteria 3021
86 Ga0316583_10038811 3300032133 Bacteria 1687
87 Ga0316574_0109284 3300035398 Bacteria 1772
88 Ga0373931_0056871 3300035691 Bacteria 2097
89 Ga0316582_0021930 3300036647 Bacteria 3783
90 Ga0316582_0244912 3300036647 Bacteria 1228
91 Ga0316584_0026317 3300036712 Bacteria 4275
92 Ga0395899_0066799 3300037312 Bacteria 2640
93 Ga0395900_0318390 3300037418 Bacteria 1536
94 Ga0436364_1542343 3300037853 Bacteria 4180
95 Ga0400490_25161 3300038726 Bacteria 1950
96 Ga0400490_25459 3300038726 Bacteria 1686
97 Ga0400491_23488 3300038727 Bacteria 2897
98 Ga0400483_011290 3300039062 Unclassified 2478
99 Ga0400483_279409 3300039062 Bacteria 2135
100 Ga0400489_00840 3300039093 Unclassified 1112
101 Ga0400489_53414 3300039093 Bacteria 4304
102 Ga0436363_1276879 3300039450 Bacteria 2024
103 Ga0439447_008753 3300041407 Bacteria 3118
104 Ga0439457_029321 3300042014 Bacteria 1219
105 Ga0450922_003187 3300042124 Bacteria 1513
106 Ga0450906_002899 3300042145 Bacteria 3725
107 Ga0466966_0000714 3300044684 Bacteria 21065
108 Ga0466961_0027333 3300044693 Bacteria 3669
109 Ga0453684_0035670 3300044712 Bacteria 6871
110 Ga0466971_0013991 3300044719 Bacteria 3526
111 Ga0466959_0013834 3300045049 Bacteria 5859
112 Ga0495592_0008419 3300046454 Bacteria 7739
113 Ga0495603_0121870 3300046455 Bacteria 1519
114 Ga0495590_0100063 3300046457 Bacteria 1029
115 Ga0495629_0000888 3300046459 Bacteria 24089
116 Ga0495629_0027683 3300046459 Bacteria 4024
117 Ga0495638_0016909 3300046460 Bacteria 4876
118 Ga0495651_0047611 3300046462 Bacteria 3314
119 Ga0495650_0059738 3300046471 Bacteria 1534
120 Ga0495580_0022915 3300046472 Bacteria 4590
121 Ga0495580_0065114 3300046472 Bacteria 2553
122 Ga0495580_0070786 3300046472 Bacteria 2436
123 Ga0495664_0008424 3300046477 Bacteria 5755
124 Ga0495664_0015191 3300046477 Bacteria 4375
125 Ga0495608_0233405 3300046511 Bacteria 1151
126 Ga0495618_0041988 3300046514 Bacteria 2882
127 Ga0495628_0043970 3300046516 Bacteria 3555
128 Ga0495628_0083849 3300046516 Unclassified 2474
129 Ga0495628_0117159 3300046516 Bacteria 2045
130 Ga0495628_0358915 3300046516 Bacteria 1070
131 Ga0495630_0024683 3300046517 Bacteria 4442
132 Ga0495637_0036018 3300046520 Bacteria 2159
133 Ga0495648_0001560 3300046524 Bacteria 22401
134 Ga0495666_0080658 3300046526 Bacteria 1540
135 Ga0495642_0006764 3300046528 Bacteria 4396
136 Ga0495652_0043409 3300046529 Bacteria 3872
137 Ga0495652_0049872 3300046529 Bacteria 3581
138 Ga0495665_0015218 3300046531 Bacteria 4145
139 Ga0495665_0020060 3300046531 Bacteria 3592
140 Ga0495665_0069018 3300046531 Bacteria 1863
141 Ga0495586_0012444 3300046535 Bacteria 4513
142 Ga0495586_0027556 3300046535 Bacteria 3039
143 Ga0495586_0107113 3300046535 Unclassified 1554
144 Ga0495587_0064605 3300046536 Bacteria 2138
145 Ga0495645_0038516 3300046543 Bacteria 3486
146 Ga0495633_0000001 3300046558 Bacteria 801972
147 Ga0495667_0109821 3300046559 Bacteria 1782
148 Ga0495634_0056914 3300046642 Bacteria 2611
149 Ga0495625_0042563 3300046660 Bacteria 3299
150 Ga0495635_0319796 3300046663 Unclassified 1039
151 Ga0495588_0216678 3300046674 Bacteria 1011
152 Ga0495599_0009493 3300046678 Bacteria 5949
153 Ga0495599_0023399 3300046678 Bacteria 3862
154 Ga0495623_0019625 3300046679 Bacteria 4369
155 Ga0495646_0022572 3300046680 Bacteria 3968
156 Ga0495624_0000853 3300046690 Bacteria 24144
157 Ga0495671_0109713 3300046692 Bacteria 1348
158 Ga0495649_0020003 3300046694 Bacteria 3757
159 Ga0495600_0011920 3300046809 Bacteria 5430
160 Ga0495581_0030811 3300047315 Bacteria 3107
161 Ga0495604_0037718 3300047317 Bacteria 3804
162 Ga0495604_0096138 3300047317 Bacteria 2187
163 Ga0495604_0296504 3300047317 Bacteria 1087
164 Ga0495674_0005434 3300047319 Bacteria 12236
165 Ga0495674_0027527 3300047319 Bacteria 5194
166 Ga0495674_0042834 3300047319 Bacteria 4034
167 Ga0495683_0048661 3300047323 Bacteria 2125
168 Ga0495687_016187 3300047443 Bacteria 3757
169 Ga0495687_018601 3300047443 Unclassified 3431
170 Ga0495675_0020124 3300047444 Bacteria 4241
171 Ga0495679_010268 3300047446 Bacteria 3686
172 Ga0495673_0032011 3300047469 Bacteria 2457
173 Ga0495593_0001320 3300047673 Bacteria 14538
174 Ga0495593_0033945 3300047673 Bacteria 2777
175 Ga0495626_0025213 3300048091 Bacteria 2910
176 Ga0496100_0223226 3300048903 Bacteria 1384
177 Ga0496101_0026705 3300048904 Bacteria 4015
178 Ga0496104_0030417 3300048907 Bacteria 5018
179 Ga0496105_0020250 3300048908 Bacteria 5375
180 Ga0495682_0005705 3300049460 Bacteria 5139
181 Ga0501034_0463689 3300049571 Bacteria 1183
182 Ga0501258_010552 3300049687 Bacteria 978
183 nmdc:mga05p37_544723_c1 3300050507 Bacteria 1322
184 nmdc:mga0a205_174340_c1 3300050515 Bacteria 2046
185 Ga0500644_0008727 3300053088 Bacteria 2684
186 Ga0500646_0003989 3300053090 Bacteria 3754
187 Ga0500646_0005228 3300053090 Bacteria 3284
188 Ga0500583_0001012 3300053092 Bacteria 8003
189 Ga0500583_0001213 3300053092 Bacteria 7384
190 Ga0500554_041900 3300053102 Bacteria 1408
191 Ga0500562_000083 3300053108 Bacteria 41350
192 Ga0500642_0002676 3300053130 Bacteria 5267
193 Ga0500658_0002937 3300053134 Bacteria 6541
194 Ga0500585_008160 3300053144 Bacteria 2913
195 Ga0500588_0060371 3300053146 Bacteria 1213
196 Ga0500616_0020482 3300053153 Bacteria 3714
197 Ga0500637_0103704 3300053178 Bacteria 1649
198 Ga0466962_0015624 3300061719 Bacteria 3660
199 2511503302 2511231052 Bacteria 6974333
200 2588232157 2585428187 Bacteria 4629388
201 2590613892 2588254257 Bacteria 5436094
202 2739304779 2738543023 Bacteria 6767879
203 2776612630 2775506987 Bacteria 5373360
204 2819550051 2818991437 Bacteria 5805520
205 2821142712 2821136567 Bacteria 8080116
206 2902052189 2902048731 Bacteria 4976191
207 2916004990 2916000859 Bacteria 6865702
208 2924183933 2924179722 Bacteria 6843264
209 2970100256 2970095765 Bacteria 6936963
210 2977232357 2977232053 Bacteria 5485925
211 Ga0065714_10064850
212 Ga0006562J51391_1002202
213 Ga0070683_100345194
214 Ga0070680_100162768
215 Ga0070689_100132739
216 Ga0070671_100046651
217 Ga0070674_100003248
218 Ga0070708_100515885
219 Ga0070663_100165771
220 Ga0070678_100324872
221 Ga0070681_10062268
222 Ga0068867_100029581
223 Ga0070679_100068840
224 Ga0070679_100236462
225 Ga0070679_100291979
226 Ga0070665_100497259
227 Ga0070664_100037928
228 Ga0068866_10040411
229 Ga0075433_10093023
230 Ga0075434_100005877
231 Ga0105251_10023928
232 Ga0105251_10053776
233 Ga0105244_10011646
234 Ga0105240_10002612
235 Ga0105240_10041903
236 Ga0105240_10540124
237 Ga0114129_10044808
238 Ga0114129_10076693
239 Ga0105242_10043436
240 Ga0105248_10070574
241 Ga0105237_10070169
242 Ga0105237_10247560
243 Ga0105238_10100293
244 Ga0105239_10053752
245 Ga0157371_10188074
246 Ga0157370_10151279
247 Ga0163162_10041448
248 Ga0157372_10063357
249 Ga0157372_10081451
250 Ga0157375_10354203
251 Ga0157375_10400460
252 Ga0163163_10165052
253 Ga0157379_10031539
254 Ga0157379_10224768
255 Ga0182006_1005450
256 Ga0213875_10028094
257 Ga0207427_106002
258 Ga0209233_1000485
259 Ga0207655_1011501
260 Ga0207707_10010829
261 Ga0207707_10046639
262 Ga0207695_10002509
263 Ga0207695_10095723
264 Ga0207671_10040562
265 Ga0207671_10194470
266 Ga0207663_10262960
267 Ga0207652_10123651
268 Ga0207652_10297857
269 Ga0207652_10365805
270 Ga0207644_10018335
271 Ga0207670_10048488
272 Ga0207669_10062588
273 Ga0207704_10271456
274 Ga0207679_10034250
275 Ga0207651_10031780
276 Ga0207678_10169399
277 Ga0207648_10007212
278 Ga0207683_10031916
279 Ga0209588_1071364
280 Ga0265337_1015319
281 Ga0265318_10046391
282 Ga0307515_10043089
283 Ga0307515_10081647
284 Ga0265324_10007166
285 Ga0265325_10008205
286 Ga0265340_10013983
287 Ga0265316_10108764
288 Ga0307513_10005112
289 Ga0307513_10140835
290 Ga0307514_10008267
291 Ga0316579_10071176
292 Ga0316576_10035009
293 Ga0316578_10026924
294 Ga0316578_10132554
295 Ga0316577_10030277
296 Ga0316583_10038811
297 Ga0316574_0109284
298 Ga0373931_0056871
299 Ga0316582_0021930
300 Ga0316582_0244912
301 Ga0316584_0026317
302 Ga0395899_0066799
303 Ga0395900_0318390
304 Ga0436364_1542343
305 Ga0400490_25161
306 Ga0400490_25459
307 Ga0400491_23488
308 Ga0400483_011290
309 Ga0400483_279409
310 Ga0400489_00840
311 Ga0400489_53414
312 Ga0436363_1276879
313 Ga0439447_008753
314 Ga0439457_029321
315 Ga0450922_003187
316 Ga0450906_002899
317 Ga0466966_0000714
318 Ga0466961_0027333
319 Ga0453684_0035670
320 Ga0466971_0013991
321 Ga0466959_0013834
322 Ga0495592_0008419
323 Ga0495603_0121870
324 Ga0495590_0100063
325 Ga0495629_0000888
326 Ga0495629_0027683
327 Ga0495638_0016909
328 Ga0495651_0047611
329 Ga0495650_0059738
330 Ga0495580_0022915
331 Ga0495580_0065114
332 Ga0495580_0070786
333 Ga0495664_0008424
334 Ga0495664_0015191
335 Ga0495608_0233405
336 Ga0495618_0041988
337 Ga0495628_0043970
338 Ga0495628_0083849
339 Ga0495628_0117159
340 Ga0495628_0358915
341 Ga0495630_0024683
342 Ga0495637_0036018
343 Ga0495648_0001560
344 Ga0495666_0080658
345 Ga0495642_0006764
346 Ga0495652_0043409
347 Ga0495652_0049872
348 Ga0495665_0015218
349 Ga0495665_0020060
350 Ga0495665_0069018
351 Ga0495586_0012444
352 Ga0495586_0027556
353 Ga0495586_0107113
354 Ga0495587_0064605
355 Ga0495645_0038516
356 Ga0495633_0000001
357 Ga0495667_0109821
358 Ga0495634_0056914
359 Ga0495625_0042563
360 Ga0495635_0319796
361 Ga0495588_0216678
362 Ga0495599_0009493
363 Ga0495599_0023399
364 Ga0495623_0019625
365 Ga0495646_0022572
366 Ga0495624_0000853
367 Ga0495671_0109713
368 Ga0495649_0020003
369 Ga0495600_0011920
370 Ga0495581_0030811
371 Ga0495604_0037718
372 Ga0495604_0096138
373 Ga0495604_0296504
374 Ga0495674_0005434
375 Ga0495674_0027527
376 Ga0495674_0042834
377 Ga0495683_0048661
378 Ga0495687_016187
379 Ga0495687_018601
380 Ga0495675_0020124
381 Ga0495679_010268
382 Ga0495673_0032011
383 Ga0495593_0001320
384 Ga0495593_0033945
385 Ga0495626_0025213
386 Ga0496100_0223226
387 Ga0496101_0026705
388 Ga0496104_0030417
389 Ga0496105_0020250
390 Ga0495682_0005705
391 Ga0501034_0463689
392 Ga0501258_010552
393 nmdc:mga05p37_544723_c1
394 nmdc:mga0a205_174340_c1
395 Ga0500644_0008727
396 Ga0500646_0003989
397 Ga0500646_0005228
398 Ga0500583_0001012
399 Ga0500583_0001213
400 Ga0500554_041900
401 Ga0500562_000083
402 Ga0500642_0002676
403 Ga0500658_0002937
404 Ga0500585_008160
405 Ga0500588_0060371
406 Ga0500616_0020482
407 Ga0500637_0103704
408 Ga0466962_0015624
409 2511503302
410 2588232157
411 2590613892
412 2739304779
413 2776612630
414 2819550051
415 2821142712
416 2902052189
417 2916004990
418 2924183933
419 2970100256
420 2977232357

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

139

319

0.91

PF13495

Phage_int_SAM_4

Phage integrase, N-terminal SAM-like domain

25

117

0.86

PF02899

Phage_int_SAM_1

Phage integrase, N-terminal SAM-like domain

26

114

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1aih-assembly2.cif.gz_C catalytic domain of bacteriophage hp1 integrase 0.8381 120 298
5dor-assembly1.cif.gz_A p2 integrase catalytic domain in space group p21 0.8211 123 298
5dor-assembly2.cif.gz_D p2 integrase catalytic domain in space group p21 0.8135 122 298
5jjv-assembly1.cif.gz_A-2 crystal structure of xerh site-specific recombinase bound to palindromic difh substrate: post-cleavage complex 0.8116 27 312
5dor-assembly1.cif.gz_B p2 integrase catalytic domain in space group p21 0.8045 123 298
ID Description Score Start End Superfamily
af_Q2FZ30_3_95_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.913 7 100 1.10.150.130
af_P0A8P6_5_99_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9042 6 97 1.10.150.130
af_Q2FY74_2_96_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.901 6 98 1.10.150.130
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8934 122 307 1.10.443.10
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8839 122 307 1.10.443.10
ID Description Score Start End GO Terms
AF-A0A1I0KG68-F1-model_v4 Phage integrase, N-terminal SAM-like domain 0.9975 2 116 GO:0003677
GO:0015074
AF-A0A7X6TRZ1-F1-model_v4 Site-specific integrase 0.9966 2 96 GO:0003677
GO:0015074
AF-A0A3P7S893-F1-model_v4 Core-binding (CB) domain-containing protein 0.9919 2 89 GO:0003677
GO:0015074
AF-A0A7V3J0H9-F1-model_v4 Integrase 0.9823 2 120 GO:0003677
GO:0015074
AF-T0ZZG8-F1-model_v4 Integrase/recombinase 0.9747 2 102 GO:0003677
GO:0015074

Map