F319718

General Info

Members Datasets Scaffolds Average Seq Length
209 149 188 217

Family's Representative Sequence

Representative Sequence 3300053739|Ga0500587_013378|Ga0500587_013378_260_979
Length 239
Sequence LGALDNAVAEGVGAVIRVLICDDHQIVRQGIRQMLADATDIVLAAEAENGPQALVLVREANDGTPPEARLNVVLMDIAMPHRDGLDVLRQIRSEFPRLPVLMLSTYPDKQYAVRSLKLGAAGYLNKSADSETMTGAIRKVAAGGLFITPTVAEQLATTISAGRSHGPEAERPLHERLSHREYQVFRLLASGSSVGEIADQLVLSSNTVSTYRARILEKTGARNDVELALYAVRADLAPI

Samples

Sample ID Description Type Environment
1 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
2 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
3 2643221570 Acidovorax sp. Root568 Isolate Unclassified
4 2643221585 Pelomonas sp. Root662 Isolate Unclassified
5 2643221596 Acidovorax sp. Root70 Isolate Unclassified
6 2643221609 Acidovorax sp. Root217 Isolate Unclassified
7 2643221611 Acidovorax sp. Root219 Isolate Unclassified
8 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
9 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
10 2643221652 Acidovorax sp. Root402 Isolate Unclassified
11 2643221656 Pelomonas sp. Root405 Isolate Unclassified
12 2643221660 Methylibium sp. Root1272 Isolate Unclassified
13 2738541337 Pelomonas sp. BT06 Isolate Unclassified
14 2738543012 Acidovorax sp. CF301 Isolate Unclassified
15 2738543013 Variovorax sp. BT01 Isolate Unclassified
16 2816332133 Acidovorax radicis 2721A Isolate Unclassified
17 2831864461 Roseateles noduli HZ7 Isolate Nodule
18 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
19 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
20 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
21 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere
22 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
23 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
24 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
25 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
26 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
27 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
28 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
29 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
30 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
31 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
32 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
33 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
34 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
35 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
36 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
37 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
40 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
41 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
42 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
43 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
44 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
47 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
48 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
49 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
69 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
77 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
80 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
81 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
82 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
83 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
84 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
93 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
94 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
97 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
98 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
99 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
100 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
101 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
102 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
103 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
104 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
105 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
106 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
107 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
108 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
109 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
110 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
111 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
112 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
113 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
114 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
115 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
116 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
117 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
123 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
124 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
125 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
126 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
127 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
128 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
129 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
133 3300049684 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_B_3_control Metagenome Rhizosphere
134 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
135 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
136 3300049764 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control Metagenome Rhizosphere
137 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
138 3300049771 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_B_4_control Metagenome Rhizosphere
139 3300049778 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
142 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
143 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
144 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
145 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
146 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
147 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
148 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
149 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.95
Metatranscriptomes 0
Isolates 10.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.97
Nodule 1.91
Rhizoplane 3.35
Rhizosphere 41.63
Stem 0
Stem Tuber 0
Unclassified 30.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000140 3300002987 Bacteria 33403
2 rootH1_10001161 3300003316 Bacteria 9871
3 rootL2_10019891 3300003322 Bacteria 13677
4 rootL2_10043014 3300003322 Bacteria 2880
5 rootL2_10177450 3300003322 Bacteria 1671
6 JGI25160J50197_1000198 3300003354 Bacteria 50243
7 JGI25161J50226_1000021 3300003374 Bacteria 163584
8 Ga0055526_1002491 3300003771 Bacteria 12426
9 Ga0055524_1000033 3300003775 Bacteria 180833
10 Ga0055530_10002700 3300003791 Bacteria 11038
11 Ga0055530_10008420 3300003791 Bacteria 4136
12 Ga0055540_1000007 3300003792 Bacteria 318178
13 Ga0055540_1000014 3300003792 Bacteria 234171
14 Ga0055531_10007120 3300003794 Bacteria 6174
15 Ga0055531_10010524 3300003794 Bacteria 4584
16 Ga0055543_1000238 3300004625 Bacteria 42822
17 Ga0055543_1003979 3300004625 Bacteria 4153
18 Ga0065165_1000024 3300005262 Bacteria 247672
19 Ga0065165_1002756 3300005262 Bacteria 13971
20 Ga0065165_1067519 3300005262 Bacteria 959
21 Ga0070669_100203654 3300005353 Bacteria 1558
22 Ga0070674_100398213 3300005356 Bacteria 1124
23 Ga0070667_100636957 3300005367 Bacteria 984
24 Ga0070662_100385420 3300005457 Bacteria 1154
25 Ga0068867_100284910 3300005459 Bacteria 1356
26 Ga0068853_100010909 3300005539 Bacteria 7363
27 Ga0068853_100241909 3300005539 Unclassified 1654
28 Ga0070672_100071203 3300005543 Bacteria 2765
29 Ga0075367_10068849 3300006178 Bacteria 2124
30 Ga0075367_10336476 3300006178 Bacteria 952
31 Ga0075370_10298333 3300006353 Bacteria 958
32 Ga0079104_1000009 3300006946 Bacteria 367015
33 Ga0099826_10094854 3300006948 Bacteria 1815
34 Ga0105240_10025656 3300009093 Bacteria 7741
35 Ga0105243_10023706 3300009148 Bacteria 4677
36 Ga0105243_10627724 3300009148 Bacteria 1038
37 Ga0182008_10028784 3300014497 Bacteria 2809
38 Ga0182007_10000252 3300015262 Bacteria 36019
39 Ga0209673_1049481 3300025273 Bacteria 1124
40 Ga0209130_1000103 3300025284 Bacteria 137115
41 Ga0209564_1000005 3300025295 Bacteria 1147192
42 Ga0209050_1000142 3300025298 Bacteria 172356
43 Ga0209050_1001541 3300025298 Bacteria 24191
44 Ga0209050_1004538 3300025298 Bacteria 9334
45 Ga0209050_1025970 3300025298 Bacteria 1975
46 Ga0209050_1026046 3300025298 Bacteria 1969
47 Ga0209256_1000019 3300025299 Bacteria 558627
48 Ga0207426_1000586 3300025302 Bacteria 48467
49 Ga0209051_1000004 3300025303 Bacteria 1155596
50 Ga0209051_1000035 3300025303 Bacteria 346999
51 Ga0209257_1000038 3300025304 Bacteria 609032
52 Ga0209257_1000044 3300025304 Bacteria 486709
53 Ga0209257_1000212 3300025304 Bacteria 138478
54 Ga0207695_10036800 3300025913 Bacteria 5286
55 Ga0207681_10235328 3300025923 Bacteria 1423
56 Ga0207706_10131092 3300025933 Bacteria 2205
57 Ga0207709_10010110 3300025935 Bacteria 5197
58 Ga0207669_10347860 3300025937 Bacteria 1144
59 Ga0207691_10054396 3300025940 Bacteria 3651
60 Ga0207668_10477859 3300025972 Bacteria 1068
61 Ga0207658_10681569 3300025986 Bacteria 928
62 Ga0207639_10000003 3300026041 Bacteria 806887
63 Ga0207639_10145114 3300026041 Unclassified 1982
64 Ga0207648_10294274 3300026089 Bacteria 1454
65 Ga0207683_10206016 3300026121 Bacteria 1789
66 Ga0209281_1000023 3300027111 Bacteria 519955
67 Ga0209996_1013747 3300027395 Bacteria 1096
68 Ga0209968_1000444 3300027526 Bacteria 6660
69 Ga0209970_1000128 3300027614 Bacteria 11407
70 Ga0209983_1010199 3300027665 Bacteria 1919
71 Ga0209966_1000046 3300027695 Bacteria 52323
72 Ga0307517_10061078 3300028786 Bacteria 3573
73 Ga0307515_10001611 3300028794 Bacteria 50308
74 Ga0307515_10006414 3300028794 Bacteria 23532
75 Ga0307515_10008712 3300028794 Bacteria 19722
76 Ga0307515_10014585 3300028794 Bacteria 14548
77 Ga0307515_10016473 3300028794 Bacteria 13528
78 Ga0307515_10054018 3300028794 Bacteria 5908
79 Ga0307515_10058055 3300028794 Bacteria 5584
80 Ga0307515_10191526 3300028794 Bacteria 1953
81 Ga0307515_10207468 3300028794 Bacteria 1814
82 Ga0307515_10240880 3300028794 Bacteria 1580
83 Ga0307512_10171458 3300030522 Bacteria 1243
84 Ga0316177_1191241 3300030731 Bacteria 5583
85 Ga0265316_10000908 3300031344 Bacteria 32308
86 Ga0307513_10000028 3300031456 Bacteria 193264
87 Ga0307513_10000568 3300031456 Bacteria 52926
88 Ga0307513_10004235 3300031456 Bacteria 19184
89 Ga0307513_10055014 3300031456 Bacteria 4261
90 Ga0307513_10086218 3300031456 Bacteria 3220
91 Ga0307513_10225557 3300031456 Bacteria 1691
92 Ga0307513_10244552 3300031456 Bacteria 1596
93 Ga0307509_10002197 3300031507 Bacteria 32007
94 Ga0307509_10040839 3300031507 Bacteria 5041
95 Ga0307509_10253146 3300031507 Bacteria 1543
96 Ga0307408_100000056 3300031548 Bacteria 140709
97 Ga0307408_100000801 3300031548 Bacteria 25175
98 Ga0307508_10000004 3300031616 Bacteria 287547
99 Ga0307508_10000150 3300031616 Bacteria 83110
100 Ga0307508_10210336 3300031616 Bacteria 1545
101 Ga0307514_10011703 3300031649 Bacteria 7299
102 Ga0307514_10017536 3300031649 Bacteria 5888
103 Ga0307516_10001680 3300031730 Bacteria 30456
104 Ga0307516_10017707 3300031730 Bacteria 7423
105 Ga0307516_10088877 3300031730 Bacteria 2921
106 Ga0307405_10653764 3300031731 Bacteria 865
107 Ga0307410_10303738 3300031852 Bacteria 1260
108 Ga0307406_10029280 3300031901 Bacteria 3334
109 Ga0307409_100164732 3300031995 Bacteria 1944
110 Ga0307416_101446431 3300032002 Bacteria 793
111 Ga0307414_10040430 3300032004 Bacteria 3150
112 Ga0307411_10000184 3300032005 Bacteria 20004
113 Ga0307507_10107093 3300033179 Bacteria 2305
114 Ga0307510_10001725 3300033180 Bacteria 24301
115 Ga0307510_10033122 3300033180 Bacteria 5808
116 Ga0307510_10077791 3300033180 Bacteria 3250
117 Ga0307510_10222662 3300033180 Bacteria 1396
118 Ga0373937_0103106 3300036401 Bacteria 2649
119 Ga0395905_0059552 3300037471 Bacteria 3570
120 Ga0439461_0021170 3300041410 Bacteria 1294
121 Ga0439431_0029423 3300041997 Bacteria 1357
122 Ga0439437_000891 3300042000 Bacteria 3111
123 Ga0439445_0013433 3300042004 Bacteria 1982
124 Ga0439445_0040368 3300042004 Bacteria 1238
125 Ga0439432_013473 3300042006 Bacteria 2781
126 Ga0439449_0036679 3300042007 Bacteria 1823
127 Ga0439455_0020711 3300042012 Bacteria 1561
128 Ga0450911_000288 3300042115 Bacteria 18516
129 Ga0450888_000776 3300042126 Bacteria 3061
130 Ga0450890_006605 3300042127 Bacteria 1481
131 Ga0450891_000139 3300042129 Bacteria 6631
132 Ga0450905_040896 3300042142 Bacteria 737
133 Ga0450893_0003852 3300042532 Bacteria 2377
134 Ga0450893_0025245 3300042532 Bacteria 1041
135 Ga0451577_0006800 3300042876 Bacteria 11332
136 Ga0451577_0503569 3300042876 Bacteria 1099
137 Ga0453684_0147155 3300044712 Bacteria 2804
138 Ga0453684_0350115 3300044712 Bacteria 1666
139 Ga0451576_0100003 3300045051 Bacteria 3016
140 Ga0451576_0326148 3300045051 Bacteria 1607
141 Ga0451576_0396211 3300045051 Bacteria 1447
142 Ga0451576_0710151 3300045051 Bacteria 1056
143 Ga0495592_0000553 3300046454 Bacteria 26681
144 Ga0495610_0056881 3300046512 Bacteria 1879
145 Ga0495632_0052005 3300046519 Bacteria 2015
146 Ga0495654_0005533 3300046530 Bacteria 7319
147 Ga0495597_0033139 3300046542 Bacteria 2341
148 Ga0496102_0001883 3300048905 Bacteria 18078
149 Ga0496102_0004044 3300048905 Bacteria 12430
150 Ga0496109_0004409 3300048912 Bacteria 11761
151 Ga0496109_0256526 3300048912 Bacteria 1647
152 Ga0496110_0173907 3300048913 Bacteria 1954
153 Ga0496113_0119066 3300048916 Bacteria 2063
154 Ga0496114_0002828 3300048917 Bacteria 13308
155 Ga0496121_0020640 3300048924 Bacteria 6505
156 Ga0496123_0199014 3300048926 Bacteria 1029
157 Ga0496124_0227101 3300048927 Bacteria 1399
158 Ga0496125_0001879 3300048928 Bacteria 28856
159 Ga0496125_0057766 3300048928 Bacteria 3139
160 Ga0496126_0178007 3300048929 Bacteria 1808
161 Ga0501291_004702 3300049514 Bacteria 1751
162 Ga0501294_001577 3300049517 Bacteria 2269
163 Ga0501038_0606058 3300049574 Bacteria 828
164 Ga0501046_0049794 3300049580 Bacteria 3313
165 Ga0501047_0048437 3300049581 Bacteria 4103
166 Ga0501222_000413 3300049662 Bacteria 6442
167 Ga0501255_001607 3300049684 Bacteria 1856
168 Ga0501221_001265 3300049704 Bacteria 4182
169 Ga0501225_0053072 3300049705 Bacteria 1131
170 Ga0501267_002688 3300049764 Bacteria 1590
171 Ga0501269_014783 3300049766 Bacteria 958
172 Ga0501274_011565 3300049771 Bacteria 826
173 Ga0501282_014900 3300049778 Bacteria 845
174 Ga0501035_0017344 3300049822 Bacteria 6639
175 nmdc:mga06z11_118739_c1 3300050494 Bacteria 1473
176 Ga0500644_0021224 3300053088 Bacteria 1943
177 Ga0500644_0047959 3300053088 Bacteria 1451
178 Ga0500644_0049459 3300053088 Bacteria 1435
179 Ga0500651_0044726 3300053093 Bacteria 2787
180 Ga0500593_000798 3300053117 Bacteria 11796
181 Ga0500593_038110 3300053117 Bacteria 2151
182 Ga0500559_0000107 3300053136 Bacteria 65560
183 Ga0500622_0002137 3300053156 Bacteria 14691
184 Ga0500634_0054056 3300053161 Bacteria 2152
185 Ga0500645_000422 3300053730 Bacteria 29281
186 Ga0500645_006263 3300053730 Bacteria 4268
187 Ga0500645_071606 3300053730 Bacteria 995
188 Ga0500587_013378 3300053739 Bacteria 1036

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042004 Ga0439445_0040368 Ga0439445_0040368_49_723 181
2 3300042006 Ga0439432_013473 Ga0439432_013473_636_1310 181
3 3300042007 Ga0439449_0036679 Ga0439449_0036679_447_1121 181
4 3300028794 Ga0307515_10006414 Ga0307515_1000641411 183
5 3300031456 Ga0307513_10225557 Ga0307513_102255572 183
6 3300053088 Ga0500644_0047959 Ga0500644_0047959_17_637 183
7 3300015262 Ga0182007_10000252 Ga0182007_100002523 184
8 3300048924 Ga0496121_0020640 Ga0496121_0020640_631_1269 184
9 3300048928 Ga0496125_0001879 Ga0496125_0001879_18900_19538 184
10 3300014497 Ga0182008_10028784 Ga0182008_100287842 185
11 3300048913 Ga0496110_0173907 Ga0496110_0173907_109_777 192
12 3300049574 Ga0501038_0606058 Ga0501038_0606058_105_725 193
13 3300049580 Ga0501046_0049794 Ga0501046_0049794_2284_2904 193
14 3300049581 Ga0501047_0048437 Ga0501047_0048437_2908_3528 193
15 3300049822 Ga0501035_0017344 Ga0501035_0017344_786_1406 193
16 iso_pu_bacteria 2643221544 2643746036 193
17 iso_pu_bacteria 2643221639 2644218033 193
18 iso_pu_bacteria 2643221646 2644258226 193
19 iso_pu_bacteria 2738541337 2739057168 193
20 3300027665 Ga0209983_1010199 Ga0209983_10101992 194
21 3300046530 Ga0495654_0005533 Ga0495654_0005533_2200_2850 194
22 iso_pu_bacteria 2643221585 2643937001 195
23 iso_pu_bacteria 2643221656 2644318166 195
24 3300005539 Ga0068853_100010909 Ga0068853_1000109093 196
25 3300009093 Ga0105240_10025656 Ga0105240_100256564 196
26 3300025913 Ga0207695_10036800 Ga0207695_100368002 196
27 3300026041 Ga0207639_10000003 Ga0207639_10000003506 196
28 3300026089 Ga0207648_10294274 Ga0207648_102942742 196
29 3300028794 Ga0307515_10001611 Ga0307515_1000161124 196
30 iso_pu_bacteria 2643221660 2644339178 196
31 3300006353 Ga0075370_10298333 Ga0075370_102983331 197
32 3300028794 Ga0307515_10240880 Ga0307515_102408802 197
33 3300031548 Ga0307408_100000056 Ga0307408_100000056119 197
34 3300041410 Ga0439461_0021170 Ga0439461_0021170_329_976 197
35 3300042000 Ga0439437_000891 Ga0439437_000891_2359_3006 197
36 3300042127 Ga0450890_006605 Ga0450890_006605_781_1428 197
37 3300042129 Ga0450891_000139 Ga0450891_000139_5940_6587 197
38 3300042142 Ga0450905_040896 Ga0450905_040896_60_707 197
39 3300042532 Ga0450893_0003852 Ga0450893_0003852_532_1179 197
40 3300049514 Ga0501291_004702 Ga0501291_004702_67_714 197
41 3300049517 Ga0501294_001577 Ga0501294_001577_722_1369 197
42 3300049662 Ga0501222_000413 Ga0501222_000413_625_1272 197
43 3300049684 Ga0501255_001607 Ga0501255_001607_1114_1761 197
44 3300049704 Ga0501221_001265 Ga0501221_001265_479_1126 197
45 3300049705 Ga0501225_0053072 Ga0501225_0053072_358_1005 197
46 3300049764 Ga0501267_002688 Ga0501267_002688_375_1022 197
47 3300049766 Ga0501269_014783 Ga0501269_014783_256_903 197
48 3300049771 Ga0501274_011565 Ga0501274_011565_113_760 197
49 3300049778 Ga0501282_014900 Ga0501282_014900_178_825 197
50 iso_pu_bacteria 2831864461 2831866721 197
51 3300003316 rootH1_10001161 rootH1_100011618 198
52 3300003322 rootL2_10019891 rootL2_100198915 198
53 3300003322 rootL2_10043014 rootL2_100430143 198
54 3300003322 rootL2_10177450 rootL2_101774502 198
55 3300003791 Ga0055530_10002700 Ga0055530_100027004 198
56 3300003792 Ga0055540_1000014 Ga0055540_1000014141 198
57 3300003794 Ga0055531_10007120 Ga0055531_100071204 198
58 3300005262 Ga0065165_1067519 Ga0065165_10675192 198
59 3300005459 Ga0068867_100284910 Ga0068867_1002849102 198
60 3300009148 Ga0105243_10023706 Ga0105243_100237065 198
61 3300025298 Ga0209050_1000142 Ga0209050_1000142141 198
62 3300025298 Ga0209050_1025970 Ga0209050_10259702 198
63 3300025303 Ga0209051_1000035 Ga0209051_1000035250 198
64 3300025304 Ga0209257_1000212 Ga0209257_100021256 198
65 3300025935 Ga0207709_10010110 Ga0207709_100101105 198
66 3300028794 Ga0307515_10058055 Ga0307515_100580553 198
67 3300031456 Ga0307513_10004235 Ga0307513_1000423512 198
68 3300031730 Ga0307516_10001680 Ga0307516_100016805 198
69 3300036401 Ga0373937_0103106 Ga0373937_0103106_1089_1730 198
70 3300042004 Ga0439445_0013433 Ga0439445_0013433_487_1125 198
71 3300042115 Ga0450911_000288 Ga0450911_000288_818_1456 198
72 3300042876 Ga0451577_0006800 Ga0451577_0006800_4544_5215 198
73 3300044712 Ga0453684_0147155 Ga0453684_0147155_1879_2520 198
74 3300044712 Ga0453684_0350115 Ga0453684_0350115_482_1123 198
75 3300046512 Ga0495610_0056881 Ga0495610_0056881_220_885 198
76 3300048905 Ga0496102_0001883 Ga0496102_0001883_13502_14143 198
77 3300048905 Ga0496102_0004044 Ga0496102_0004044_2417_3058 198
78 3300048928 Ga0496125_0057766 Ga0496125_0057766_1476_2114 198
79 3300048929 Ga0496126_0178007 Ga0496126_0178007_534_1172 198
80 3300053117 Ga0500593_000798 Ga0500593_000798_8188_8829 198
81 3300053161 Ga0500634_0054056 Ga0500634_0054056_151_786 198
82 3300003775 Ga0055524_1000033 Ga0055524_100003357 199
83 3300003791 Ga0055530_10008420 Ga0055530_100084202 199
84 3300003792 Ga0055540_1000007 Ga0055540_10000077 199
85 3300003794 Ga0055531_10010524 Ga0055531_100105243 199
86 3300005539 Ga0068853_100241909 Ga0068853_1002419092 199
87 3300006946 Ga0079104_1000009 Ga0079104_1000009273 199
88 3300025273 Ga0209673_1049481 Ga0209673_10494812 199
89 3300025298 Ga0209050_1001541 Ga0209050_10015417 199
90 3300025298 Ga0209050_1026046 Ga0209050_10260462 199
91 3300025299 Ga0209256_1000019 Ga0209256_1000019334 199
92 3300025303 Ga0209051_1000004 Ga0209051_100000460 199
93 3300025304 Ga0209257_1000038 Ga0209257_1000038194 199
94 3300025304 Ga0209257_1000044 Ga0209257_1000044366 199
95 3300026041 Ga0207639_10145114 Ga0207639_101451143 199
96 3300027111 Ga0209281_1000023 Ga0209281_1000023114 199
97 3300028794 Ga0307515_10014585 Ga0307515_100145855 199
98 3300028794 Ga0307515_10054018 Ga0307515_100540186 199
99 3300030522 Ga0307512_10171458 Ga0307512_101714582 199
100 3300031507 Ga0307509_10253146 Ga0307509_102531462 199
101 3300031616 Ga0307508_10000004 Ga0307508_1000000431 199
102 3300031649 Ga0307514_10017536 Ga0307514_100175365 199
103 3300031995 Ga0307409_100164732 Ga0307409_1001647322 199
104 3300032004 Ga0307414_10040430 Ga0307414_100404302 199
105 3300032005 Ga0307411_10000184 Ga0307411_100001845 199
106 3300033179 Ga0307507_10107093 Ga0307507_101070932 199
107 3300042876 Ga0451577_0503569 Ga0451577_0503569_255_908 199
108 3300045051 Ga0451576_0100003 Ga0451576_0100003_1754_2407 199
109 3300045051 Ga0451576_0326148 Ga0451576_0326148_202_849 199
110 3300048917 Ga0496114_0002828 Ga0496114_0002828_815_1474 199
111 3300048927 Ga0496124_0227101 Ga0496124_0227101_625_1290 199
112 iso_pu_bacteria 2643221570 2643866287 199
113 iso_pu_bacteria 2643221596 2643994277 199
114 iso_pu_bacteria 2643221609 2644057467 199
115 iso_pu_bacteria 2643221611 2644072444 199
116 iso_pu_bacteria 2643221652 2644293107 199
117 iso_pu_bacteria 2738543012 2739241738 199
118 iso_pu_bacteria 2816332133 2816470957 199
119 iso_pu_bacteria 2990710928 2990714341 199
120 3300003771 Ga0055526_1002491 Ga0055526_10024916 200
121 3300004625 Ga0055543_1003979 Ga0055543_10039792 200
122 3300005262 Ga0065165_1000024 Ga0065165_100002426 200
123 3300025295 Ga0209564_1000005 Ga0209564_1000005398 200
124 3300028786 Ga0307517_10061078 Ga0307517_100610783 200
125 3300031507 Ga0307509_10002197 Ga0307509_1000219718 200
126 3300031616 Ga0307508_10000150 Ga0307508_1000015055 200
127 3300031616 Ga0307508_10210336 Ga0307508_102103362 200
128 3300031730 Ga0307516_10088877 Ga0307516_100888772 200
129 3300033180 Ga0307510_10077791 Ga0307510_100777912 200
130 3300037471 Ga0395905_0059552 Ga0395905_0059552_644_1318 200
131 3300041997 Ga0439431_0029423 Ga0439431_0029423_266_943 200
132 3300042126 Ga0450888_000776 Ga0450888_000776_541_1218 200
133 3300042532 Ga0450893_0025245 Ga0450893_0025245_265_942 200
134 3300045051 Ga0451576_0396211 Ga0451576_0396211_142_801 200
135 3300048912 Ga0496109_0256526 Ga0496109_0256526_39_704 200
136 3300048926 Ga0496123_0199014 Ga0496123_0199014_53_718 200
137 3300053156 Ga0500622_0002137 Ga0500622_0002137_1266_1931 200
138 iso_pu_bacteria 2738543013 2739250195 200
139 iso_pu_bacteria 2842718218 2842718234 200
140 3300005353 Ga0070669_100203654 Ga0070669_1002036542 201
141 3300005356 Ga0070674_100398213 Ga0070674_1003982132 201
142 3300005457 Ga0070662_100385420 Ga0070662_1003854201 201
143 3300005543 Ga0070672_100071203 Ga0070672_1000712033 201
144 3300009148 Ga0105243_10627724 Ga0105243_106277242 201
145 3300025923 Ga0207681_10235328 Ga0207681_102353281 201
146 3300025933 Ga0207706_10131092 Ga0207706_101310922 201
147 3300025937 Ga0207669_10347860 Ga0207669_103478602 201
148 3300025940 Ga0207691_10054396 Ga0207691_100543964 201
149 3300025972 Ga0207668_10477859 Ga0207668_104778591 201
150 3300026121 Ga0207683_10206016 Ga0207683_102060161 201
151 3300031852 Ga0307410_10303738 Ga0307410_103037382 201
152 3300045051 Ga0451576_0710151 Ga0451576_0710151_117_776 201
153 iso_pu_bacteria 2511231002 2511244990 201
154 3300005367 Ga0070667_100636957 Ga0070667_1006369571 202
155 3300025986 Ga0207658_10681569 Ga0207658_106815692 202
156 3300028794 Ga0307515_10016473 Ga0307515_100164733 202
157 3300028794 Ga0307515_10191526 Ga0307515_101915262 202
158 3300031344 Ga0265316_10000908 Ga0265316_1000090824 202
159 3300031456 Ga0307513_10055014 Ga0307513_100550142 202
160 3300031456 Ga0307513_10086218 Ga0307513_100862183 202
161 3300031507 Ga0307509_10040839 Ga0307509_100408392 202
162 3300031548 Ga0307408_100000801 Ga0307408_10000080123 202
163 3300031649 Ga0307514_10011703 Ga0307514_100117037 202
164 3300031901 Ga0307406_10029280 Ga0307406_100292803 202
165 3300033180 Ga0307510_10001725 Ga0307510_1000172511 202
166 3300033180 Ga0307510_10033122 Ga0307510_100331226 202
167 3300033180 Ga0307510_10222662 Ga0307510_102226622 202
168 3300042012 Ga0439455_0020711 Ga0439455_0020711_179_832 202
169 3300046454 Ga0495592_0000553 Ga0495592_0000553_14413_15090 202
170 3300046519 Ga0495632_0052005 Ga0495632_0052005_751_1428 202
171 3300048916 Ga0496113_0119066 Ga0496113_0119066_932_1609 202
172 3300053117 Ga0500593_038110 Ga0500593_038110_657_1322 202
173 3300053136 Ga0500559_0000107 Ga0500559_0000107_16999_17676 202
174 iso_pu_bacteria 2974320154 2974320836 202
175 3300006178 Ga0075367_10068849 Ga0075367_100688492 203
176 3300027395 Ga0209996_1013747 Ga0209996_10137472 203
177 3300027526 Ga0209968_1000444 Ga0209968_10004447 203
178 3300027614 Ga0209970_1000128 Ga0209970_10001282 203
179 3300027695 Ga0209966_1000046 Ga0209966_100004622 203
180 3300032002 Ga0307416_101446431 Ga0307416_1014464312 203
181 3300046542 Ga0495597_0033139 Ga0495597_0033139_1678_2331 203
182 3300050494 nmdc:mga06z11_118739_c1 nmdc:mga06z11_118739_c1_359_1009 203
183 3300053088 Ga0500644_0021224 Ga0500644_0021224_809_1471 203
184 3300053088 Ga0500644_0049459 Ga0500644_0049459_466_1125 203
185 3300053093 Ga0500651_0044726 Ga0500651_0044726_2107_2766 204
186 3300053739 Ga0500587_013378 Ga0500587_013378_260_979 204
187 3300002987 JGI25159J45721_1000140 JGI25159J45721_100014028 205
188 3300003354 JGI25160J50197_1000198 JGI25160J50197_100019833 205
189 3300003374 JGI25161J50226_1000021 JGI25161J50226_1000021136 205
190 3300004625 Ga0055543_1000238 Ga0055543_100023816 205
191 3300005262 Ga0065165_1002756 Ga0065165_100275612 205
192 3300006178 Ga0075367_10336476 Ga0075367_103364762 205
193 3300006948 Ga0099826_10094854 Ga0099826_100948542 205
194 3300025284 Ga0209130_1000103 Ga0209130_100010328 205
195 3300025298 Ga0209050_1004538 Ga0209050_10045381 205
196 3300025302 Ga0207426_1000586 Ga0207426_100058628 205
197 3300028794 Ga0307515_10008712 Ga0307515_1000871212 205
198 3300028794 Ga0307515_10207468 Ga0307515_102074682 205
199 3300030731 Ga0316177_1191241 Ga0316177_11912416 205
200 3300031456 Ga0307513_10000028 Ga0307513_1000002839 205
201 3300031456 Ga0307513_10000568 Ga0307513_1000056827 205
202 3300031456 Ga0307513_10244552 Ga0307513_102445522 205
203 3300031730 Ga0307516_10017707 Ga0307516_100177076 205
204 3300031731 Ga0307405_10653764 Ga0307405_106537641 205
205 3300048912 Ga0496109_0004409 Ga0496109_0004409_5453_6121 205
206 3300053730 Ga0500645_000422 Ga0500645_000422_5520_6185 205
207 3300053730 Ga0500645_006263 Ga0500645_006263_3165_3830 205
208 3300053730 Ga0500645_071606 Ga0500645_071606_300_959 205
209 iso_pu_bacteria 2919704043 2919708157 205

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

175

231

0.97

PF00072

Response_reg

Response regulator receiver domain

18

138

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9446 143 202
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.9408 138 200
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.937 138 200
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.937 141 197
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9362 142 200
ID Description Score Start End Superfamily
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9775 143 199 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9666 141 198 1.10.10.10
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9637 139 199 1.10.10.10
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9584 141 198 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.937 141 197 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A258T8G6-F1-model_v4 deleted 0.9983 1 137
AF-A0A4Q3N840-F1-model_v4 Response regulator transcription factor 0.9933 1 137 GO:0000160
AF-A0A519ZC64-F1-model_v4 Response regulator transcription factor 0.9922 2 109 GO:0000160
GO:0003677
AF-A0A519ZC64-F1-model_v4 Response regulator transcription factor 0.9655 2 109 GO:0000160
GO:0003677
AF-A0A3A4PHP1-F1-model_v4 DNA-binding response regulator 0.9572 2 132 GO:0000160
GO:0003677

Feature Viewer

pLDDT pTM Quality
89.08 0.68 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map